AlfalfaGEDB | Msa0909000

M. sativa cultivar zhongmu-4 / Msa0909000

KEGG: K15692
GO: GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564
PFAM: PF02225.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909000	XP_013469537.1	97.959	441	9	0	1	441	1	441	0.0	875

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909000	sp\|Q8VZ14\|RMR2_ARATH	65.837	442	137	4	13	441	8	448	0.0	526

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0909000	0.851408	9.049885e-61	-8.615850e-47
Msa0002930	Msa0909000	-0.811518	6.725867e-51	-8.615850e-47
Msa0004860	Msa0909000	-0.828673	7.888308e-55	-8.615850e-47
Msa0004920	Msa0909000	-0.818373	2.028099e-52	-8.615850e-47
Msa0012040	Msa0909000	-0.827143	1.840628e-54	-8.615850e-47
Msa0012080	Msa0909000	-0.803353	3.630857e-49	-8.615850e-47
Msa0013050	Msa0909000	0.869471	3.020345e-66	-8.615850e-47
Msa0015460	Msa0909000	-0.801111	1.050583e-48	-8.615850e-47
Msa0023830	Msa0909000	0.802925	4.450797e-49	-8.615850e-47
Msa0025730	Msa0909000	-0.806346	8.601644e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909000	MtrunA17_Chr1g0200721	97.959	441	9	0	1	441	1	441	0.0	875
Msa0909000	MtrunA17_Chr8g0370171	31.783	129	69	7	170	287	36	156	1.91e-12	66.2
Msa0909000	MtrunA17_Chr2g0297011	30.233	129	78	5	161	283	28	150	2.37e-12	65.1
Msa0909000	MtrunA17_Chr1g0169651	37.179	78	44	2	200	277	652	724	4.18e-12	68.2
Msa0909000	MtrunA17_Chr5g0408871	33.750	80	51	1	213	292	483	560	6.55e-12	67.4
Msa0909000	MtrunA17_Chr3g0112041	52.830	53	24	1	234	286	212	263	1.50e-11	64.7
Msa0909000	MtrunA17_Chr8g0345361	41.667	72	38	3	208	278	92	160	1.57e-11	64.3
Msa0909000	MtrunA17_Chr4g0031911	56.000	50	21	1	228	277	202	250	1.73e-11	64.7
Msa0909000	MtrunA17_Chr3g0132491	31.148	122	71	6	167	277	59	178	2.15e-11	65.1
Msa0909000	MtrunA17_Chr4g0031921	56.000	50	21	1	228	277	202	250	2.96e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909000	AT1G71980.1	65.837	442	137	4	13	441	8	448	0.0	526
Msa0909000	AT4G09560.1	51.474	441	181	11	20	439	18	446	3.38e-126	373
Msa0909000	AT1G35630.1	56.419	296	129	0	10	305	8	303	4.40e-120	353
Msa0909000	AT1G35625.1	55.776	303	120	2	10	305	8	303	1.20e-115	342
Msa0909000	AT1G22670.1	47.917	432	182	11	21	440	22	422	8.25e-114	341
Msa0909000	AT5G66160.1	44.485	272	141	5	13	282	16	279	9.08e-67	216
Msa0909000	AT5G66160.2	44.485	272	141	5	13	282	16	279	3.47e-66	214
Msa0909000	AT4G09120.1	29.545	220	139	7	162	374	47	257	1.27e-13	72.4
Msa0909000	AT5G07225.1	38.356	73	40	2	208	280	165	232	2.89e-12	66.6
Msa0909000	AT1G33480.1	32.432	148	86	7	208	344	75	219	8.22e-12	65.9

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Find 151 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATCAATACTCCCTC+CGG	0.509806	6_2:+10054063	None:intergenic
AAAATCATCCAAAGAGAAAT+TGG	0.236083	6_2:+10053863	None:intergenic
AAACTCAGCATGGTCTATCA+TGG	0.545970	6_2:-10051962	Msa0909000:CDS
AAACTTACTGAAGCATTGCT+TGG	0.472660	6_2:+10050460	None:intergenic
AAAGAGGATGCCGCAGATGA+CGG	0.530793	6_2:+10050766	None:intergenic
AAATCATCCAAAGAGAAATT+GGG	0.410830	6_2:+10053864	None:intergenic
AACAATTCAACATTCCGGAA+GGG	0.612915	6_2:+10050354	None:intergenic
AAGAAAACAGAGAGCATCAA+AGG	0.548255	6_2:-10053975	Msa0909000:five_prime_UTR
AAGAGGATGCCGCAGATGAC+GGG	0.460435	6_2:+10050767	None:intergenic
AAGAGGCTCTGCCAAGAATA+AGG	0.342445	6_2:+10052875	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAATCAATACTCCCTC+CGG	+	chr6_2:10049747-10049766	None:intergenic	30.0%
AATCATCCAAAGAGAAATTG+GGG	+	chr6_2:10049945-10049964	None:intergenic	30.0%
ACTATTGGAAATTCTTACAC+TGG	-	chr6_2:10050228-10050247	Msa0909000:three_prime_UTR	30.0%
AAAAGGATTTGAATTGATGC+TGG	-	chr6_2:10050320-10050339	Msa0909000:three_prime_UTR	30.0%
AATATGTCAACAAACAGTTG+AGG	-	chr6_2:10050343-10050362	Msa0909000:exon	30.0%
AATTTGTGTTTCCTTTGTGA+TGG	-	chr6_2:10050605-10050624	Msa0909000:CDS	30.0%
TCATGTTAACAAAAAGAGAC+AGG	+	chr6_2:10050862-10050881	None:intergenic	30.0%
ATTGTCTATGACAATGAAGA+TGG	-	chr6_2:10051090-10051109	Msa0909000:intron	30.0%
GAAATCAATCCAACAAGAAA+TGG	+	chr6_2:10051609-10051628	None:intergenic	30.0%
GGTATTTGTTTCAAAAGCTT+CGG	-	chr6_2:10051758-10051777	Msa0909000:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	10049722	10054107	10049722	ID=Msa0909000;Name=Msa0909000
chr6_2	mRNA	10049722	10054107	10049722	ID=Msa0909000-mRNA-1;Parent=Msa0909000;Name=Msa0909000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=290\|1\|1\|1\|1\|1\|4\|638\|441
chr6_2	exon	10049722	10050919	10049722	ID=Msa0909000-mRNA-1:exon:2516;Parent=Msa0909000-mRNA-1
chr6_2	exon	10051698	10052105	10051698	ID=Msa0909000-mRNA-1:exon:2515;Parent=Msa0909000-mRNA-1
chr6_2	exon	10052700	10052930	10052700	ID=Msa0909000-mRNA-1:exon:2514;Parent=Msa0909000-mRNA-1
chr6_2	exon	10053691	10054107	10053691	ID=Msa0909000-mRNA-1:exon:2513;Parent=Msa0909000-mRNA-1
chr6_2	five_prime_UTR	10053818	10054107	10053818	ID=Msa0909000-mRNA-1:five_prime_utr;Parent=Msa0909000-mRNA-1
chr6_2	CDS	10053691	10053817	10053691	ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2	CDS	10052700	10052930	10052700	ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2	CDS	10051698	10052105	10051698	ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2	CDS	10050360	10050919	10050360	ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2	three_prime_UTR	10049722	10050359	10049722	ID=Msa0909000-mRNA-1:three_prime_utr;Parent=Msa0909000-mRNA-1

Gene Sequence

>Msa0909000

ATGGGTTCCTCGAATCTTTGCTTCTTTTTCTTCTCTTTGTTGAGTTTGTGTGCTATGGCGGCTGCTAAGGTTGTGTTGATTGGGAACAACATCACTCTCTCGTTTGATGATATTGAAGCTAATTTCGCTCCATCGGTCAAAGGTTCTGGAGAATACGGAGCCTTATTCTTGGCAGAGCCTCTTGATGCATGTACAGAACTTACGAATAAAGCTAGAACACTTTCGAATGCTAGTTCACCTTTTGTTTTGATGGTTAGAGGGGGGTGTAGCTTTGAGGAAAAGGTTAGGATTGCACAAAGTGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATACATGCGGTATTTGTTTCAAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGTTTAACTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCGTTCATTTCCCTGTTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATACGAAGAGAAAGGCCTCAAACTTCTTCTCATGTTCGTGAATTTCATGGCATGAGTAGTCGCTTAGTGAAAGCAATGCCAAGTTTGATTTTTACTTCTGCTTTGGAAGATAACTGTACATCAAGAACATGTGCCATCTGCCTTGAAGATTATTGCGCTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACGGGTCTGGCTGATCCACCACCTTCAGAATCCACACCTCTGCTGTCATCAACCCCGTCATCTGCGGCATCCTCTTTCGTGTCTTCTATGAGGTCATCATTTGCTTCATCTTCAGCAATACAAATTGGTTCACCGTCGCAATCTGTTTCTCGTAACCACTCTTTAGCAAGTACCCCTTACAATCAGCCTTCTCTAAGGTCCTACCGTCAATCCCCCTCCCTAAGCTTCAGCCGTAGCTCTGTGGATCTTAGGAACGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATCGGTTATCCATCTTTATCATCTCTTAACTCAAGATACTTGCCTTCACACATTCCAAGTCCAAGCAATGCTTCAGTAAGTTTCCTCGGTTCATCCAGTCATCAGCAGCATCCACTCCGATATAGTGAGTCAGCCTCAAGCTTCTCACCATTTGCGTCTGCCAACTCCCTTCCGGAATGTTGA

Protein sequence

>Msa0909000

MGSSNLCFFFFSLLSLCAMAAAKVVLIGNNITLSFDDIEANFAPSVKGSGEYGALFLAEPLDACTELTNKARTLSNASSPFVLMVRGGCSFEEKVRIAQSAGYKAAIVYDNEDGGILVAMAGNSAGIRIHAVFVSKASGEILKKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQTSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCAGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSTPSSAASSFVSSMRSSFASSSAIQIGSPSQSVSRNHSLASTPYNQPSLRSYRQSPSLSFSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYLPSHIPSPSNASVSFLGSSSHQQHPLRYSESASSFSPFASANSLPEC*