AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0909000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909000 MtrunA17_Chr1g0200721 97.959 441 9 0 1 441 1 441 0.0 875
Msa0909000 MtrunA17_Chr8g0370171 31.783 129 69 7 170 287 36 156 1.91e-12 66.2
Msa0909000 MtrunA17_Chr2g0297011 30.233 129 78 5 161 283 28 150 2.37e-12 65.1
Msa0909000 MtrunA17_Chr1g0169651 37.179 78 44 2 200 277 652 724 4.18e-12 68.2
Msa0909000 MtrunA17_Chr5g0408871 33.750 80 51 1 213 292 483 560 6.55e-12 67.4
Msa0909000 MtrunA17_Chr3g0112041 52.830 53 24 1 234 286 212 263 1.50e-11 64.7
Msa0909000 MtrunA17_Chr8g0345361 41.667 72 38 3 208 278 92 160 1.57e-11 64.3
Msa0909000 MtrunA17_Chr4g0031911 56.000 50 21 1 228 277 202 250 1.73e-11 64.7
Msa0909000 MtrunA17_Chr3g0132491 31.148 122 71 6 167 277 59 178 2.15e-11 65.1
Msa0909000 MtrunA17_Chr4g0031921 56.000 50 21 1 228 277 202 250 2.96e-11 63.9
Msa0909000 MtrunA17_Chr7g0246761 45.333 75 31 4 208 277 63 132 3.03e-11 62.4
Msa0909000 MtrunA17_Chr7g0274711 32.374 139 71 6 160 277 2 138 5.19e-11 61.6
Msa0909000 MtrunA17_Chr7g0274741 31.111 135 64 5 171 277 8 141 6.15e-11 61.2
Msa0909000 MtrunA17_Chr6g0451031 54.545 44 18 2 235 277 69 111 7.09e-11 59.7
Msa0909000 MtrunA17_Chr6g0451051 35.345 116 62 6 165 277 3 108 8.99e-11 60.1
Msa0909000 MtrunA17_Chr7g0244851 28.800 125 84 4 156 277 27 149 9.11e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909000 AT1G71980.1 65.837 442 137 4 13 441 8 448 0.0 526
Msa0909000 AT4G09560.1 51.474 441 181 11 20 439 18 446 3.38e-126 373
Msa0909000 AT1G35630.1 56.419 296 129 0 10 305 8 303 4.40e-120 353
Msa0909000 AT1G35625.1 55.776 303 120 2 10 305 8 303 1.20e-115 342
Msa0909000 AT1G22670.1 47.917 432 182 11 21 440 22 422 8.25e-114 341
Msa0909000 AT5G66160.1 44.485 272 141 5 13 282 16 279 9.08e-67 216
Msa0909000 AT5G66160.2 44.485 272 141 5 13 282 16 279 3.47e-66 214
Msa0909000 AT4G09120.1 29.545 220 139 7 162 374 47 257 1.27e-13 72.4
Msa0909000 AT5G07225.1 38.356 73 40 2 208 280 165 232 2.89e-12 66.6
Msa0909000 AT1G33480.1 32.432 148 86 7 208 344 75 219 8.22e-12 65.9
Msa0909000 AT3G18773.1 27.742 155 98 4 133 277 22 172 1.22e-11 64.7
Msa0909000 AT3G55530.1 54.000 50 22 1 234 283 210 258 1.60e-11 65.1
Msa0909000 AT1G20823.1 38.889 72 42 2 208 278 84 154 4.50e-11 62.4
Msa0909000 AT3G10910.1 40.278 72 40 3 208 278 88 157 5.02e-11 62.0
Msa0909000 AT4G09100.1 37.662 77 44 3 204 277 52 127 6.53e-11 60.5

Find 151 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATTTGTACATATATTAT+TGG 0.149050 6_2:+10049832 None:intergenic
ATGCTGCCTGTGTGGATTCT+TGG 0.196122 6_2:-10050891 Msa0909000:CDS
TTCTTTACATGTGATGATTA+TGG 0.223372 6_2:-10050128 Msa0909000:three_prime_UTR
AAAATCATCCAAAGAGAAAT+TGG 0.236083 6_2:+10053863 None:intergenic
TTTCTATTCAATTGCTTTGA+TGG 0.239348 6_2:-10053814 Msa0909000:exon
CAAAATCCCCAATTTCTCTT+TGG 0.270427 6_2:-10053871 Msa0909000:five_prime_UTR
TCATCTTCAGCAATACAAAT+TGG 0.282025 6_2:-10050715 Msa0909000:CDS
CTTGCATCACGCTTGCAAAC+TGG 0.302893 6_2:+10050844 None:intergenic
ATAATATTGTGACAGCAAAA+TGG 0.306240 6_2:+10054012 None:intergenic
TGTGTGAAGCTAGAGATCTT+TGG 0.332608 6_2:+10050560 None:intergenic
ATGACTTCCTTGTTGGCATC+TGG 0.337707 6_2:-10050181 Msa0909000:three_prime_UTR
GATGATATTGAAGCTAATTT+CGG 0.338035 6_2:-10053690 Msa0909000:intron
CAGAGCTACGGCTGAAGCTT+AGG 0.338278 6_2:+10050602 None:intergenic
GCTCCATCGGTCAAAGGTTC+TGG 0.338386 6_2:-10052909 Msa0909000:CDS
TCTCATGTTCGTGAATTTCA+TGG 0.340632 6_2:-10051841 Msa0909000:CDS
AAGAGGCTCTGCCAAGAATA+AGG 0.342445 6_2:+10052875 None:intergenic
TGCGTCTGCCAACTCCCTTC+CGG 0.343050 6_2:-10050368 Msa0909000:CDS
TGGATTCTTGGCTTACTTCA+TGG 0.348035 6_2:-10050879 Msa0909000:CDS
CTGGCAAATGACTTCCTTGT+TGG 0.353290 6_2:-10050188 Msa0909000:three_prime_UTR
CATTAGCCAATGCAGCTCTA+TGG 0.363582 6_2:+10049736 None:intergenic
GCTGCTAAGGTTGTGTTGAT+TGG 0.367855 6_2:-10053735 Msa0909000:CDS
GTATTTGTTTCAAAAGCTTC+GGG 0.371506 6_2:-10052048 Msa0909000:CDS
GGGGTGTAGCTTTGAGGAAA+AGG 0.371973 6_2:-10052775 Msa0909000:CDS
GGTATTTGTTTCAAAAGCTT+CGG 0.372526 6_2:-10052049 Msa0909000:CDS
TTCTATTCAATTGCTTTGAT+GGG 0.379978 6_2:-10053813 Msa0909000:exon
CTTAGAGAAGGCTGATTGTA+AGG 0.389822 6_2:+10050646 None:intergenic
GTTAGCTATGTCTGCAGTGC+TGG 0.390348 6_2:-10051920 Msa0909000:CDS
CAATAATATATGTACAAATT+CGG 0.399084 6_2:-10049831 Msa0909000:three_prime_UTR
CTCCAGCGCAATAATCTTCA+AGG 0.399738 6_2:+10051728 None:intergenic
GGAATGTTGAATTGTTCAAT+TGG 0.409738 6_2:-10050347 Msa0909000:exon
AAATCATCCAAAGAGAAATT+GGG 0.410830 6_2:+10053864 None:intergenic
CCACTTGTTTCTTCGTCCGC+AGG 0.412166 6_2:-10051897 Msa0909000:CDS
GCACTGCAGACATAGCTAAC+AGG 0.412818 6_2:+10051923 None:intergenic
GAGTGGATGCTGCTGATGAC+TGG 0.415213 6_2:+10050426 None:intergenic
TAATATTGTGACAGCAAAAT+GGG 0.415946 6_2:+10054013 None:intergenic
AGAATACGGAGCCTTATTCT+TGG 0.417360 6_2:-10052886 Msa0909000:CDS
ACATAATCTCATCATTCAAT+TGG 0.419264 6_2:+10049912 None:intergenic
CTGCTAAGGTTGTGTTGATT+GGG 0.421036 6_2:-10053734 Msa0909000:CDS
TTGCATCACGCTTGCAAACT+GGG 0.424562 6_2:+10050845 None:intergenic
GCGTGATGCAAGAACGGGTC+TGG 0.427986 6_2:-10050833 Msa0909000:CDS
GCCGTAGCTCTGTGGATCTT+AGG 0.428506 6_2:-10050591 Msa0909000:CDS
TAACTATACTTTGAAAATCA+AGG 0.436326 6_2:+10050019 None:intergenic
GTGTGCTATGGCGGCTGCTA+AGG 0.439742 6_2:-10053748 Msa0909000:CDS
GTGTGAAGCTAGAGATCTTT+GGG 0.442142 6_2:+10050561 None:intergenic
ACTGTTGAAGTTAGATGATA+AGG 0.442928 6_2:+10049860 None:intergenic
ATAGACTGACGGTCATCATT+TGG 0.445069 6_2:+10050254 None:intergenic
TTTGTTGAGTTTGTGTGCTA+TGG 0.453295 6_2:-10053760 Msa0909000:CDS
AAGAGGATGCCGCAGATGAC+GGG 0.460435 6_2:+10050767 None:intergenic
TTTAAACCATAGAGCTGCAT+TGG 0.462193 6_2:-10049742 Msa0909000:three_prime_UTR
CTTACAATCAGCCTTCTCTA+AGG 0.462445 6_2:-10050645 Msa0909000:CDS
TGCCTTGAAGATTATTGCGC+TGG 0.467679 6_2:-10051730 Msa0909000:CDS
AGAGCTACGGCTGAAGCTTA+GGG 0.468094 6_2:+10050603 None:intergenic
AATTGAACAATTCAACATTC+CGG 0.470205 6_2:+10050349 None:intergenic
GGAGGGAATGTCGATGGGTA+TGG 0.470908 6_2:+10050229 None:intergenic
ACGCTTGCAAACTGGGCAAA+AGG 0.471145 6_2:+10050852 None:intergenic
AAACTTACTGAAGCATTGCT+TGG 0.472660 6_2:+10050460 None:intergenic
TGCAAGCGTGATGCAAGAAC+GGG 0.474555 6_2:-10050838 Msa0909000:CDS
TTGAGGCTGACTCACTATAT+CGG 0.477494 6_2:+10050404 None:intergenic
GTCAAAGGTTCTGGAGAATA+CGG 0.481854 6_2:-10052900 Msa0909000:CDS
GTTCAATGACTCGGCAATCA+CGG 0.495171 6_2:+10050287 None:intergenic
ACTGAAGCATTGCTTGGACT+TGG 0.496274 6_2:+10050466 None:intergenic
TTCAATGACTCGGCAATCAC+GGG 0.501128 6_2:+10050288 None:intergenic
CGAACATGAGAAGAAGTTTG+AGG 0.503157 6_2:+10051853 None:intergenic
CGCTCATTAGTTCAATGACT+CGG 0.503715 6_2:+10050278 None:intergenic
GTAGCTTTGAGGAAAAGGTT+AGG 0.503932 6_2:-10052770 Msa0909000:CDS
ACGGCTGAAGCTTAGGGAGG+GGG 0.504414 6_2:+10050609 None:intergenic
TCAACATTCCGGAAGGGAGT+TGG 0.506625 6_2:+10050360 None:intergenic
CCTCTAACCATCAAAACAAA+AGG 0.508806 6_2:+10052798 None:intergenic
AAAATAATCAATACTCCCTC+CGG 0.509806 6_2:+10054063 None:intergenic
GTTAGGATTGCACAAAGTGC+TGG 0.514958 6_2:-10052753 Msa0909000:CDS
ATGAATTCACCGCGTTCCAT+CGG 0.515963 6_2:-10050538 Msa0909000:CDS
AATGCTTCAGTAAGTTTCCT+CGG 0.522483 6_2:-10050454 Msa0909000:CDS
ATGAGATTATGTGATACTCT+TGG 0.523072 6_2:-10049901 Msa0909000:three_prime_UTR
AGGGAGTTGGCAGACGCAAA+TGG 0.523123 6_2:+10050373 None:intergenic
CAATGAAGATGGTGGCATCC+TGG 0.526957 6_2:-10052706 Msa0909000:CDS
CCTCTTTCGTGTCTTCTATG+AGG 0.529305 6_2:-10050750 Msa0909000:CDS
AAAGAGGATGCCGCAGATGA+CGG 0.530793 6_2:+10050766 None:intergenic
GGAAGACTTACTGTGACAGC+AGG 0.533020 6_2:+10051687 None:intergenic
AGGAGACACAAAACAGAAGG+AGG 0.533663 6_2:+10050211 None:intergenic
TTGCAAGCGTGATGCAAGAA+CGG 0.539276 6_2:-10050839 Msa0909000:CDS
TACGGCTGAAGCTTAGGGAG+GGG 0.539291 6_2:+10050608 None:intergenic
ATACACTGGTTTAACTAATG+TGG 0.540905 6_2:-10052010 Msa0909000:CDS
TCCTAAGATCCACAGAGCTA+CGG 0.545254 6_2:+10050590 None:intergenic
AAACTCAGCATGGTCTATCA+TGG 0.545970 6_2:-10051962 Msa0909000:CDS
AAGAAAACAGAGAGCATCAA+AGG 0.548255 6_2:-10053975 Msa0909000:five_prime_UTR
AATATATGTACAAATTCGGT+GGG 0.551101 6_2:-10049827 Msa0909000:three_prime_UTR
ATTGCGCTGGAGAGAAACTC+AGG 0.554269 6_2:-10051717 Msa0909000:CDS
TTAGAGAAGGCTGATTGTAA+GGG 0.554606 6_2:+10050647 None:intergenic
TCAGTGGCAGGAAATTCTGC+TGG 0.554718 6_2:-10052087 Msa0909000:intron
ATTTCAGCTCCATCGGTCAA+AGG 0.556014 6_2:-10052915 Msa0909000:intron
TAATATATGTACAAATTCGG+TGG 0.557205 6_2:-10049828 Msa0909000:three_prime_UTR
ATATGATTGAGATGTCTTTG+CGG 0.558850 6_2:-10050316 Msa0909000:three_prime_UTR
GTCATCAACCCCGTCATCTG+CGG 0.562171 6_2:-10050776 Msa0909000:CDS
GCTGCTAACAAGAGAAATGT+TGG 0.562365 6_2:-10049992 Msa0909000:three_prime_UTR
GAGTTAAGAGATGATAAAGA+TGG 0.565530 6_2:+10050511 None:intergenic
GAACAATTCAACATTCCGGA+AGG 0.572328 6_2:+10050353 None:intergenic
CACTGCAGACATAGCTAACA+GGG 0.573295 6_2:+10051924 None:intergenic
TCTCCAGAACCTTTGACCGA+TGG 0.573751 6_2:+10052906 None:intergenic
AATTTGCTTATAATAGTGAC+CGG 0.574154 6_2:-10054082 Msa0909000:five_prime_UTR
ACAGAAGGAGGGAATGTCGA+TGG 0.576650 6_2:+10050223 None:intergenic
GCAATAATCTTCAAGGCAGA+TGG 0.580122 6_2:+10051735 None:intergenic
GTTGAGTTTGTGTGCTATGG+CGG 0.580366 6_2:-10053757 Msa0909000:CDS
TGCTTATAATAGTGACCGGA+GGG 0.583543 6_2:-10054078 Msa0909000:five_prime_UTR
AGCATCAAAGGAATAGAACA+AGG 0.586048 6_2:-10053963 Msa0909000:five_prime_UTR
TGATAAAGATGGATAACCGA+TGG 0.589393 6_2:+10050522 None:intergenic
CCTCATAGAAGACACGAAAG+AGG 0.590401 6_2:+10050750 None:intergenic
AGATAGATAGATATGTATGT+TGG 0.595258 6_2:-10049783 Msa0909000:three_prime_UTR
ATTGTCTATGACAATGAAGA+TGG 0.598093 6_2:-10052717 Msa0909000:CDS
AATCATCCAAAGAGAAATTG+GGG 0.599598 6_2:+10053865 None:intergenic
AAGCTTCAGCCGTAGCTCTG+TGG 0.606819 6_2:-10050599 Msa0909000:CDS
GGTTGATGACAGCAGAGGTG+TGG 0.607896 6_2:+10050789 None:intergenic
GGCATCGCATACGAAGAGAA+AGG 0.608323 6_2:-10051876 Msa0909000:CDS
GTTTAACTAATGTGGAAACA+TGG 0.611755 6_2:-10052002 Msa0909000:CDS
AACAATTCAACATTCCGGAA+GGG 0.612915 6_2:+10050354 None:intergenic
AAGGGGTACTTGCTAAAGAG+TGG 0.614377 6_2:+10050665 None:intergenic
AGAGGATGCCGCAGATGACG+GGG 0.616002 6_2:+10050768 None:intergenic
GCTACGGCTGAAGCTTAGGG+AGG 0.617291 6_2:+10050606 None:intergenic
AGAGTTTCATGCTGCCTGTG+TGG 0.623183 6_2:-10050899 Msa0909000:CDS
CAGAGGAGACACAAAACAGA+AGG 0.623406 6_2:+10050208 None:intergenic
CAGAAGGAGGGAATGTCGAT+GGG 0.625784 6_2:+10050224 None:intergenic
AGTTCTGTACATGCATCAAG+AGG 0.627860 6_2:+10052858 None:intergenic
GGAGACACAAAACAGAAGGA+GGG 0.627881 6_2:+10050212 None:intergenic
CTACGGCTGAAGCTTAGGGA+GGG 0.629238 6_2:+10050607 None:intergenic
TGACGGTAGGACCTTAGAGA+AGG 0.630058 6_2:+10050634 None:intergenic
CTTGGACTTGGAATGTGTGA+AGG 0.631090 6_2:+10050478 None:intergenic
GAAATACTAAAGAAATACAC+TGG 0.632691 6_2:-10052024 Msa0909000:CDS
TTGCTTATAATAGTGACCGG+AGG 0.637006 6_2:-10054079 Msa0909000:five_prime_UTR
TGCTGGTATAAGAATACATG+CGG 0.638072 6_2:-10052070 Msa0909000:CDS
TAGAGAAGGCTGATTGTAAG+GGG 0.638407 6_2:+10050648 None:intergenic
GGTGTGGATTCTGAAGGTGG+TGG 0.642431 6_2:+10050805 None:intergenic
CTCTTCGTATGCGATGCCTG+CGG 0.646212 6_2:+10051881 None:intergenic
ATTGGTCATTACTTGCAACC+AGG 0.654527 6_2:+10052688 None:intergenic
GATGGATAACCGATGGAACG+CGG 0.656285 6_2:+10050529 None:intergenic
CGCAAATGGTGAGAAGCTTG+AGG 0.656667 6_2:+10050387 None:intergenic
ATGTACACCAGATGCCAACA+AGG 0.658962 6_2:+10050174 None:intergenic
AATCAAAGCGTAAAACACAC+TGG 0.667954 6_2:+10050060 None:intergenic
AGAGGTGTGGATTCTGAAGG+TGG 0.668803 6_2:+10050802 None:intergenic
CGAGTCATTGAACTAATGAG+CGG 0.677812 6_2:-10050277 Msa0909000:three_prime_UTR
GAAGACTTACTGTGACAGCA+GGG 0.683669 6_2:+10051688 None:intergenic
GACGGGGTTGATGACAGCAG+AGG 0.693540 6_2:+10050784 None:intergenic
AGCAGAGGTGTGGATTCTGA+AGG 0.694144 6_2:+10050799 None:intergenic
ACAAGGAAGTCATTTGCCAG+AGG 0.695574 6_2:+10050191 None:intergenic
TGGGTATGGACATAGACTGA+CGG 0.695823 6_2:+10050243 None:intergenic
GCATCAAAGGAATAGAACAA+GGG 0.703114 6_2:-10053962 Msa0909000:five_prime_UTR
CCTGCGGACGAAGAAACAAG+TGG 0.703165 6_2:+10051897 None:intergenic
GTCTATGACAATGAAGATGG+TGG 0.704480 6_2:-10052714 Msa0909000:CDS
GCTGACTCACTATATCGGAG+TGG 0.710724 6_2:+10050409 None:intergenic
GCTGATGACTGGATGAACCG+AGG 0.715695 6_2:+10050437 None:intergenic
CAAAGCGTAAAACACACTGG+TGG 0.737621 6_2:+10050063 None:intergenic
TTACGAGAAACAGATTGCGA+CGG 0.739626 6_2:+10050688 None:intergenic
AGTAAGCCAAGAATCCACAC+AGG 0.748693 6_2:+10050885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAATCAAATGATTT+TGG + chr6_2:10052534-10052553 None:intergenic 10.0%
!! TTTAATCACAAAAATAAATC+CGG + chr6_2:10050726-10050745 None:intergenic 15.0%
!!! TTGTTATGTCTTTTTTTTTA+TGG + chr6_2:10051366-10051385 None:intergenic 15.0%
!!! TTTTTATCCTATATTGTATT+TGG + chr6_2:10051542-10051561 None:intergenic 15.0%
!! GATAAATTATAATTTCTGAT+TGG - chr6_2:10051684-10051703 Msa0909000:intron 15.0%
!! CAATAATATATGTACAAATT+CGG - chr6_2:10053976-10053995 Msa0909000:five_prime_UTR 15.0%
!!! TGAATAGGATTTTGATTTTA+TGG - chr6_2:10050197-10050216 Msa0909000:three_prime_UTR 20.0%
!! CTTTCTTTATTAGATAGAAT+AGG + chr6_2:10050284-10050303 None:intergenic 20.0%
!! ACTTATATTAGGTAACATTA+TGG - chr6_2:10050472-10050491 Msa0909000:CDS 20.0%
!!! ATTAAATTTGTGCTTTGTTT+GGG - chr6_2:10050740-10050759 Msa0909000:CDS 20.0%
!!! TGAAATTATTTTACAGAAGT+TGG - chr6_2:10051409-10051428 Msa0909000:intron 20.0%
!! TTCATTATTACAATATCTCT+TGG - chr6_2:10051440-10051459 Msa0909000:intron 20.0%
!! TGATAATCCAAATACAATAT+AGG - chr6_2:10051532-10051551 Msa0909000:intron 20.0%
!! TAGGATAAAAAATTGAAACT+TGG - chr6_2:10051551-10051570 Msa0909000:intron 20.0%
!! GCAATAATGTAAAATCTATA+AGG - chr6_2:10051573-10051592 Msa0909000:intron 20.0%
!! AAATTATAATTTCTGATTGG+TGG - chr6_2:10051687-10051706 Msa0909000:intron 20.0%
!! TTTGAAAAAGGGAAAAAAAT+TGG + chr6_2:10052150-10052169 None:intergenic 20.0%
!! AATACACTGAATTTGAAAAA+GGG + chr6_2:10052161-10052180 None:intergenic 20.0%
!!! AAATAATTTCTATTCTGAGA+CGG - chr6_2:10052435-10052454 Msa0909000:intron 20.0%
!!! TTCTAATTCAATTTTTTTCC+TGG - chr6_2:10052873-10052892 Msa0909000:CDS 20.0%
!!! TAACTATACTTTGAAAATCA+AGG + chr6_2:10053791-10053810 None:intergenic 20.0%
!! CGAATTTGTACATATATTAT+TGG + chr6_2:10053978-10053997 None:intergenic 20.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr6_2:10049725-10049744 Msa0909000:three_prime_UTR 25.0%
! TAATATTGTGACAGCAAAAT+GGG + chr6_2:10049797-10049816 None:intergenic 25.0%
! ATAATATTGTGACAGCAAAA+TGG + chr6_2:10049798-10049817 None:intergenic 25.0%
!!! GATTTTGAAAATTAGGGTTT+CGG + chr6_2:10049923-10049942 None:intergenic 25.0%
!!! ATTGGGGATTTTGAAAATTA+GGG + chr6_2:10049929-10049948 None:intergenic 25.0%
!!! AATTGGGGATTTTGAAAATT+AGG + chr6_2:10049930-10049949 None:intergenic 25.0%
! AAATCATCCAAAGAGAAATT+GGG + chr6_2:10049946-10049965 None:intergenic 25.0%
! AAAATCATCCAAAGAGAAAT+TGG + chr6_2:10049947-10049966 None:intergenic 25.0%
! TTTCTATTCAATTGCTTTGA+TGG - chr6_2:10049993-10050012 Msa0909000:three_prime_UTR 25.0%
! TTCTATTCAATTGCTTTGAT+GGG - chr6_2:10049994-10050013 Msa0909000:three_prime_UTR 25.0%
! GATGATATTGAAGCTAATTT+CGG - chr6_2:10050117-10050136 Msa0909000:three_prime_UTR 25.0%
! TTTATGGAATTTGTGACTAT+TGG - chr6_2:10050213-10050232 Msa0909000:three_prime_UTR 25.0%
! TTGGTTGTTGTACTTATATT+AGG - chr6_2:10050461-10050480 Msa0909000:CDS 25.0%
!! TCTAGAATATAACTATAGAG+AGG + chr6_2:10050586-10050605 None:intergenic 25.0%
!! AAGTATATGCTTTAAGTCTA+TGG + chr6_2:10050652-10050671 None:intergenic 25.0%
! TATATTCCGGAATTTATCTT+AGG + chr6_2:10050681-10050700 None:intergenic 25.0%
! ATAAATCCGGAATTTATCTT+AGG + chr6_2:10050713-10050732 None:intergenic 25.0%
!! GATTAAATTTGTGCTTTGTT+TGG - chr6_2:10050739-10050758 Msa0909000:CDS 25.0%
!!! TTAAATTTGTGCTTTGTTTG+GGG - chr6_2:10050741-10050760 Msa0909000:CDS 25.0%
! TATAGTATTGCATTTGATTG+TGG - chr6_2:10050819-10050838 Msa0909000:CDS 25.0%
!! TCTCTTTTTGTTAACATGAA+TGG - chr6_2:10050863-10050882 Msa0909000:CDS 25.0%
! ATGTTGCTACATAAAACAAT+TGG + chr6_2:10051140-10051159 None:intergenic 25.0%
! TTATTACAATATCTCTTGGA+AGG - chr6_2:10051444-10051463 Msa0909000:intron 25.0%
! AATTTATCAGAATATGACTC+AGG + chr6_2:10051672-10051691 None:intergenic 25.0%
! GAAATACTAAAGAAATACAC+TGG - chr6_2:10051783-10051802 Msa0909000:CDS 25.0%
!!! TTTGATTTTTACTTCTGCTT+TGG - chr6_2:10052022-10052041 Msa0909000:CDS 25.0%
! AAAGGGAAAAAAATTGGAAT+GGG + chr6_2:10052144-10052163 None:intergenic 25.0%
! AAAAGGGAAAAAAATTGGAA+TGG + chr6_2:10052145-10052164 None:intergenic 25.0%
! CAATACACTGAATTTGAAAA+AGG + chr6_2:10052162-10052181 None:intergenic 25.0%
! TTTCAAATTCAGTGTATTGT+TGG - chr6_2:10052163-10052182 Msa0909000:intron 25.0%
! TACTGTGTGCAATTTATTAT+TGG - chr6_2:10052214-10052233 Msa0909000:intron 25.0%
! TGTGCAATTTATTATTGGAT+TGG - chr6_2:10052219-10052238 Msa0909000:intron 25.0%
! TATAAATGCCAGTTATTATC+TGG - chr6_2:10052306-10052325 Msa0909000:intron 25.0%
! CACAGTTCAAACAAATTAAA+TGG + chr6_2:10052609-10052628 None:intergenic 25.0%
!!! CATTTAATTTGTTTGAACTG+TGG - chr6_2:10052607-10052626 Msa0909000:intron 25.0%
! ACAAAGAAAAACAAGAAACT+AGG + chr6_2:10052729-10052748 None:intergenic 25.0%
! ATGTACTAGTAACTTCAAAA+CGG + chr6_2:10052819-10052838 None:intergenic 25.0%
! AATTGAACAATTCAACATTC+CGG + chr6_2:10053461-10053480 None:intergenic 25.0%
! TTCTTTACATGTGATGATTA+TGG - chr6_2:10053679-10053698 Msa0909000:intron 25.0%
!! TTATGGTTCTTACATTTTTC+AGG - chr6_2:10053696-10053715 Msa0909000:CDS 25.0%
! ACATAATCTCATCATTCAAT+TGG + chr6_2:10053898-10053917 None:intergenic 25.0%
! TAATATATGTACAAATTCGG+TGG - chr6_2:10053979-10053998 Msa0909000:five_prime_UTR 25.0%
! AATATATGTACAAATTCGGT+GGG - chr6_2:10053980-10053999 Msa0909000:five_prime_UTR 25.0%
! AGATAGATAGATATGTATGT+TGG - chr6_2:10054024-10054043 Msa0909000:five_prime_UTR 25.0%
AAAATAATCAATACTCCCTC+CGG + chr6_2:10049747-10049766 None:intergenic 30.0%
AATCATCCAAAGAGAAATTG+GGG + chr6_2:10049945-10049964 None:intergenic 30.0%
! AGCACGAAAGATTAGATTTT+TGG + chr6_2:10049973-10049992 None:intergenic 30.0%
!!! TTGTTTTTTGCCTTCGAATT+TGG - chr6_2:10050146-10050165 Msa0909000:three_prime_UTR 30.0%
! TGATTTCAGCTAGTTTGAAT+AGG - chr6_2:10050182-10050201 Msa0909000:three_prime_UTR 30.0%
ACTATTGGAAATTCTTACAC+TGG - chr6_2:10050228-10050247 Msa0909000:three_prime_UTR 30.0%
AAAAGGATTTGAATTGATGC+TGG - chr6_2:10050320-10050339 Msa0909000:three_prime_UTR 30.0%
AATATGTCAACAAACAGTTG+AGG - chr6_2:10050343-10050362 Msa0909000:exon 30.0%
AATTTGTGTTTCCTTTGTGA+TGG - chr6_2:10050605-10050624 Msa0909000:CDS 30.0%
TCATGTTAACAAAAAGAGAC+AGG + chr6_2:10050862-10050881 None:intergenic 30.0%
!!! TAGTTCACCTTTTGTTTTGA+TGG - chr6_2:10051002-10051021 Msa0909000:intron 30.0%
!!! CTTTTGTTTTGATGGTTAGA+GGG - chr6_2:10051010-10051029 Msa0909000:intron 30.0%
!!! TTTTGTTTTGATGGTTAGAG+GGG - chr6_2:10051011-10051030 Msa0909000:intron 30.0%
ATTGTCTATGACAATGAAGA+TGG - chr6_2:10051090-10051109 Msa0909000:intron 30.0%
! GCAAAAACGTTTCTAGATAA+TGG + chr6_2:10051289-10051308 None:intergenic 30.0%
GAAATCAATCCAACAAGAAA+TGG + chr6_2:10051609-10051628 None:intergenic 30.0%
!!! TGGTGGTTTTTTAATTTCAG+TGG - chr6_2:10051704-10051723 Msa0909000:CDS 30.0%
GGTATTTGTTTCAAAAGCTT+CGG - chr6_2:10051758-10051777 Msa0909000:CDS 30.0%
GTATTTGTTTCAAAAGCTTC+GGG - chr6_2:10051759-10051778 Msa0909000:CDS 30.0%
!! ATACACTGGTTTAACTAATG+TGG - chr6_2:10051797-10051816 Msa0909000:CDS 30.0%
GTTTAACTAATGTGGAAACA+TGG - chr6_2:10051805-10051824 Msa0909000:CDS 30.0%
GCAGAAGTAAAAATCAAACT+TGG + chr6_2:10052020-10052039 None:intergenic 30.0%
AAAGTTAACACCAATGTGTA+AGG + chr6_2:10052275-10052294 None:intergenic 30.0%
ACAATAAAACCAAAGAGACA+TGG + chr6_2:10052389-10052408 None:intergenic 30.0%
AAAAAATGCTGACCAAAAAC+AGG - chr6_2:10052554-10052573 Msa0909000:intron 30.0%
GACTAAACTGATGATATACT+GGG + chr6_2:10052674-10052693 None:intergenic 30.0%
AGAAAAACAAGAAACTAGGA+AGG + chr6_2:10052725-10052744 None:intergenic 30.0%
TGTACTAGTAACTTCAAAAC+GGG + chr6_2:10052818-10052837 None:intergenic 30.0%
TCATCTTCAGCAATACAAAT+TGG - chr6_2:10053092-10053111 Msa0909000:intron 30.0%
GAGTTAAGAGATGATAAAGA+TGG + chr6_2:10053299-10053318 None:intergenic 30.0%
GGAATGTTGAATTGTTCAAT+TGG - chr6_2:10053460-10053479 Msa0909000:intron 30.0%
ATATGATTGAGATGTCTTTG+CGG - chr6_2:10053491-10053510 Msa0909000:intron 30.0%
ATGAGATTATGTGATACTCT+TGG - chr6_2:10053906-10053925 Msa0909000:five_prime_UTR 30.0%
ACTGTTGAAGTTAGATGATA+AGG + chr6_2:10053950-10053969 None:intergenic 30.0%
!! AAGAAAACAGAGAGCATCAA+AGG - chr6_2:10049832-10049851 Msa0909000:three_prime_UTR 35.0%
AGCATCAAAGGAATAGAACA+AGG - chr6_2:10049844-10049863 Msa0909000:three_prime_UTR 35.0%
GCATCAAAGGAATAGAACAA+GGG - chr6_2:10049845-10049864 Msa0909000:three_prime_UTR 35.0%
!! GGGAACATTCATTTTTGACA+TGG - chr6_2:10049865-10049884 Msa0909000:three_prime_UTR 35.0%
CAAAATCCCCAATTTCTCTT+TGG - chr6_2:10049936-10049955 Msa0909000:three_prime_UTR 35.0%
GAAAAAGAAGCAAAGATTCG+AGG + chr6_2:10050022-10050041 None:intergenic 35.0%
TTTGTTGAGTTTGTGTGCTA+TGG - chr6_2:10050047-10050066 Msa0909000:three_prime_UTR 35.0%
AACACAGAATCCAAATTCGA+AGG + chr6_2:10050159-10050178 None:intergenic 35.0%
!! TCTTACACTGGTAGTGTTTT+TGG - chr6_2:10050240-10050259 Msa0909000:three_prime_UTR 35.0%
!! AAAGTTTTATCCCGGTAAGT+GGG + chr6_2:10050443-10050462 None:intergenic 35.0%
!! CAACAACCAAAGTTTTATCC+CGG + chr6_2:10050451-10050470 None:intergenic 35.0%
GCCATTCCTAAGATAAATTC+CGG - chr6_2:10050672-10050691 Msa0909000:CDS 35.0%
TCCGGAATTTATCTTAGGAA+TGG + chr6_2:10050676-10050695 None:intergenic 35.0%
TAGGAATGGCAAGTATATTC+CGG + chr6_2:10050694-10050713 None:intergenic 35.0%
GCCATTCCTAAGATAAATTC+CGG - chr6_2:10050672-10050691 Msa0909000:CDS 35.0%
TCCGGAATTTATCTTAGGAA+TGG + chr6_2:10050676-10050695 None:intergenic 35.0%
CCTCTAACCATCAAAACAAA+AGG + chr6_2:10051012-10051031 None:intergenic 35.0%
!!! CCTTTTGTTTTGATGGTTAG+AGG - chr6_2:10051009-10051028 Msa0909000:intron 35.0%
!!! TTTGTTTTGATGGTTAGAGG+GGG - chr6_2:10051012-10051031 Msa0909000:intron 35.0%
AAATGCTAATGTGAGTTGTC+TGG - chr6_2:10051221-10051240 Msa0909000:intron 35.0%
TCTCTTGGAAGGAAAATATC+AGG - chr6_2:10051455-10051474 Msa0909000:intron 35.0%
CTCTTGGAAGGAAAATATCA+GGG - chr6_2:10051456-10051475 Msa0909000:intron 35.0%
GTGCATATTGAACAACATTC+TGG - chr6_2:10051496-10051515 Msa0909000:intron 35.0%
CAACAAGAAATGGTCATCAA+TGG + chr6_2:10051599-10051618 None:intergenic 35.0%
! CATTGATGACCATTTCTTGT+TGG - chr6_2:10051597-10051616 Msa0909000:intron 35.0%
!!! GGTTTTTTAATTTCAGTGGC+AGG - chr6_2:10051708-10051727 Msa0909000:CDS 35.0%
TGCTGGTATAAGAATACATG+CGG - chr6_2:10051737-10051756 Msa0909000:CDS 35.0%
! CATGCTGAGTTTTCAAAAGT+TGG + chr6_2:10051837-10051856 None:intergenic 35.0%
!! CAACTTTTGAAAACTCAGCA+TGG - chr6_2:10051835-10051854 Msa0909000:CDS 35.0%
TCTCATGTTCGTGAATTTCA+TGG - chr6_2:10051966-10051985 Msa0909000:CDS 35.0%
GCTTTCATATGTCTCAACAA+AGG + chr6_2:10052253-10052272 None:intergenic 35.0%
CATATGAAAGCCTTACACAT+TGG - chr6_2:10052262-10052281 Msa0909000:intron 35.0%
CTCATTTGCCAGATAATAAC+TGG + chr6_2:10052317-10052336 None:intergenic 35.0%
ATGAGAATGTCTTTGTCATG+AGG - chr6_2:10052332-10052351 Msa0909000:intron 35.0%
CTCTCGTATTGTTAAAGACA+AGG + chr6_2:10052644-10052663 None:intergenic 35.0%
GGACTAAACTGATGATATAC+TGG + chr6_2:10052675-10052694 None:intergenic 35.0%
TTCATCAGGGATAAAGGTAA+TGG + chr6_2:10052696-10052715 None:intergenic 35.0%
GAAACAACATATCAATAGCC+AGG + chr6_2:10052773-10052792 None:intergenic 35.0%
TTAGAGAAGGCTGATTGTAA+GGG + chr6_2:10053163-10053182 None:intergenic 35.0%
TGATAAAGATGGATAACCGA+TGG + chr6_2:10053288-10053307 None:intergenic 35.0%
!! AAACTTACTGAAGCATTGCT+TGG + chr6_2:10053350-10053369 None:intergenic 35.0%
AATGCTTCAGTAAGTTTCCT+CGG - chr6_2:10053353-10053372 Msa0909000:intron 35.0%
AACAATTCAACATTCCGGAA+GGG + chr6_2:10053456-10053475 None:intergenic 35.0%
!!! GGTTCTTACATTTTTCAGGT+TGG - chr6_2:10053700-10053719 Msa0909000:CDS 35.0%
AATCAAAGCGTAAAACACAC+TGG + chr6_2:10053750-10053769 None:intergenic 35.0%
TTTAAACCATAGAGCTGCAT+TGG - chr6_2:10054065-10054084 Msa0909000:five_prime_UTR 35.0%
TTGCTTATAATAGTGACCGG+AGG - chr6_2:10049728-10049747 Msa0909000:three_prime_UTR 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr6_2:10049729-10049748 Msa0909000:three_prime_UTR 40.0%
!! CTGCTAAGGTTGTGTTGATT+GGG - chr6_2:10050073-10050092 Msa0909000:three_prime_UTR 40.0%
GAGAGAGAAAGAGAGAGAAA+AGG - chr6_2:10050303-10050322 Msa0909000:three_prime_UTR 40.0%
!! AAGTTTTATCCCGGTAAGTG+GGG + chr6_2:10050442-10050461 None:intergenic 40.0%
!! CAAAGTTTTATCCCGGTAAG+TGG + chr6_2:10050444-10050463 None:intergenic 40.0%
CACTTACCGGGATAAAACTT+TGG - chr6_2:10050442-10050461 Msa0909000:CDS 40.0%
! AAGTCTTATCCCGGTAAGTA+GGG + chr6_2:10050521-10050540 None:intergenic 40.0%
! AAAGTCTTATCCCGGTAAGT+AGG + chr6_2:10050522-10050541 None:intergenic 40.0%
TACTTACCGGGATAAGACTT+TGG - chr6_2:10050521-10050540 Msa0909000:CDS 40.0%
! CAACAACCAAAGTCTTATCC+CGG + chr6_2:10050530-10050549 None:intergenic 40.0%
TGTTTCCTTTGTGATGGTTG+TGG - chr6_2:10050611-10050630 Msa0909000:CDS 40.0%
!! TGCTTTGTTTGGGGAAAAGA+TGG - chr6_2:10050750-10050769 Msa0909000:CDS 40.0%
!!! GCTTTTGATTTCAGCTCCAT+CGG - chr6_2:10050885-10050904 Msa0909000:CDS 40.0%
!! GTCAAAGGTTCTGGAGAATA+CGG - chr6_2:10050907-10050926 Msa0909000:intron 40.0%
!! AGAATACGGAGCCTTATTCT+TGG - chr6_2:10050921-10050940 Msa0909000:intron 40.0%
AGTTCTGTACATGCATCAAG+AGG + chr6_2:10050952-10050971 None:intergenic 40.0%
!!! TTGTTTTGATGGTTAGAGGG+GGG - chr6_2:10051013-10051032 Msa0909000:intron 40.0%
!! GTAGCTTTGAGGAAAAGGTT+AGG - chr6_2:10051037-10051056 Msa0909000:intron 40.0%
GTCTATGACAATGAAGATGG+TGG - chr6_2:10051093-10051112 Msa0909000:intron 40.0%
ATTGGTCATTACTTGCAACC+AGG + chr6_2:10051122-10051141 None:intergenic 40.0%
AACAACATTCTGGACAAGCT+TGG - chr6_2:10051506-10051525 Msa0909000:intron 40.0%
AAACTCAGCATGGTCTATCA+TGG - chr6_2:10051845-10051864 Msa0909000:CDS 40.0%
CGAACATGAGAAGAAGTTTG+AGG + chr6_2:10051957-10051976 None:intergenic 40.0%
GCAATAATCTTCAAGGCAGA+TGG + chr6_2:10052075-10052094 None:intergenic 40.0%
TAAAACCAAAGAGACATGGC+CGG + chr6_2:10052385-10052404 None:intergenic 40.0%
! ACCAAAAACAGGTTTGCTTG+AGG - chr6_2:10052565-10052584 Msa0909000:intron 40.0%
! TCCTCAAGCAAACCTGTTTT+TGG + chr6_2:10052569-10052588 None:intergenic 40.0%
AAATGGAACACGAGTGTACT+AGG + chr6_2:10052592-10052611 None:intergenic 40.0%
CCTCATTTCATCAGGGATAA+AGG + chr6_2:10052702-10052721 None:intergenic 40.0%
CCTTTATCCCTGATGAAATG+AGG - chr6_2:10052699-10052718 Msa0909000:intron 40.0%
! CGATTTTACTATACGCTTCC+TGG - chr6_2:10052752-10052771 Msa0909000:CDS 40.0%
TGGATTCTTGGCTTACTTCA+TGG - chr6_2:10052928-10052947 Msa0909000:intron 40.0%
TTACGAGAAACAGATTGCGA+CGG + chr6_2:10053122-10053141 None:intergenic 40.0%
TAGAGAAGGCTGATTGTAAG+GGG + chr6_2:10053162-10053181 None:intergenic 40.0%
CTTAGAGAAGGCTGATTGTA+AGG + chr6_2:10053164-10053183 None:intergenic 40.0%
CTTACAATCAGCCTTCTCTA+AGG - chr6_2:10053162-10053181 Msa0909000:intron 40.0%
GTGTGAAGCTAGAGATCTTT+GGG + chr6_2:10053249-10053268 None:intergenic 40.0%
TGTGTGAAGCTAGAGATCTT+TGG + chr6_2:10053250-10053269 None:intergenic 40.0%
! TTGAGGCTGACTCACTATAT+CGG + chr6_2:10053406-10053425 None:intergenic 40.0%
GAACAATTCAACATTCCGGA+AGG + chr6_2:10053457-10053476 None:intergenic 40.0%
CGCTCATTAGTTCAATGACT+CGG + chr6_2:10053532-10053551 None:intergenic 40.0%
CGAGTCATTGAACTAATGAG+CGG - chr6_2:10053530-10053549 Msa0909000:intron 40.0%
ATAGACTGACGGTCATCATT+TGG + chr6_2:10053556-10053575 None:intergenic 40.0%
GCTGCTAACAAGAGAAATGT+TGG - chr6_2:10053815-10053834 Msa0909000:exon 40.0%
GTTGAGTTTGTGTGCTATGG+CGG - chr6_2:10050050-10050069 Msa0909000:three_prime_UTR 45.0%
! GCTGCTAAGGTTGTGTTGAT+TGG - chr6_2:10050072-10050091 Msa0909000:three_prime_UTR 45.0%
!!! TGGTAGTGTTTTTGGCACAC+TGG - chr6_2:10050248-10050267 Msa0909000:three_prime_UTR 45.0%
TTCCTTTGTGATGGTTGTGG+TGG - chr6_2:10050614-10050633 Msa0909000:CDS 45.0%
ATTTCAGCTCCATCGGTCAA+AGG - chr6_2:10050892-10050911 Msa0909000:CDS 45.0%
AAGAGGCTCTGCCAAGAATA+AGG + chr6_2:10050935-10050954 None:intergenic 45.0%
GTTAGGATTGCACAAAGTGC+TGG - chr6_2:10051054-10051073 Msa0909000:intron 45.0%
GAGTTGTCTGGTACACTAAC+TGG - chr6_2:10051233-10051252 Msa0909000:intron 45.0%
TCTGGTACACTAACTGGTTG+TGG - chr6_2:10051239-10051258 Msa0909000:intron 45.0%
!! CAGGGTTCTAGCTTAGTATG+TGG - chr6_2:10051474-10051493 Msa0909000:intron 45.0%
CACTGCAGACATAGCTAACA+GGG + chr6_2:10051886-10051905 None:intergenic 45.0%
TGCCTTGAAGATTATTGCGC+TGG - chr6_2:10052077-10052096 Msa0909000:CDS 45.0%
CTCCAGCGCAATAATCTTCA+AGG + chr6_2:10052082-10052101 None:intergenic 45.0%
GAAGACTTACTGTGACAGCA+GGG + chr6_2:10052122-10052141 None:intergenic 45.0%
GAATGTCTTTGTCATGAGGC+AGG - chr6_2:10052336-10052355 Msa0909000:intron 45.0%
CTTTGTCATGAGGCAGGTTA+TGG - chr6_2:10052342-10052361 Msa0909000:intron 45.0%
!! CAGGTTATGGCTATTTTCCC+AGG - chr6_2:10052355-10052374 Msa0909000:intron 45.0%
!! GGCTATTTTCCCAGGATTTC+CGG - chr6_2:10052363-10052382 Msa0909000:intron 45.0%
AGGAAGGCCTCATTTCATCA+GGG + chr6_2:10052709-10052728 None:intergenic 45.0%
TAGGAAGGCCTCATTTCATC+AGG + chr6_2:10052710-10052729 None:intergenic 45.0%
AACTCTGTCAATAAGTCGCC+AGG + chr6_2:10052894-10052913 None:intergenic 45.0%
AGTAAGCCAAGAATCCACAC+AGG + chr6_2:10052925-10052944 None:intergenic 45.0%
TTGCATCACGCTTGCAAACT+GGG + chr6_2:10052965-10052984 None:intergenic 45.0%
TTGCAAGCGTGATGCAAGAA+CGG - chr6_2:10052968-10052987 Msa0909000:intron 45.0%
CCTCATAGAAGACACGAAAG+AGG + chr6_2:10053060-10053079 None:intergenic 45.0%
CCTCTTTCGTGTCTTCTATG+AGG - chr6_2:10053057-10053076 Msa0909000:intron 45.0%
!! AAGGGGTACTTGCTAAAGAG+TGG + chr6_2:10053145-10053164 None:intergenic 45.0%
TCCTAAGATCCACAGAGCTA+CGG + chr6_2:10053220-10053239 None:intergenic 45.0%
ATGAATTCACCGCGTTCCAT+CGG - chr6_2:10053269-10053288 Msa0909000:intron 45.0%
CTTGGACTTGGAATGTGTGA+AGG + chr6_2:10053332-10053351 None:intergenic 45.0%
!! ACTGAAGCATTGCTTGGACT+TGG + chr6_2:10053344-10053363 None:intergenic 45.0%
! TTCAATGACTCGGCAATCAC+GGG + chr6_2:10053522-10053541 None:intergenic 45.0%
! GTTCAATGACTCGGCAATCA+CGG + chr6_2:10053523-10053542 None:intergenic 45.0%
TGGGTATGGACATAGACTGA+CGG + chr6_2:10053567-10053586 None:intergenic 45.0%
GGAGACACAAAACAGAAGGA+GGG + chr6_2:10053598-10053617 None:intergenic 45.0%
AGGAGACACAAAACAGAAGG+AGG + chr6_2:10053599-10053618 None:intergenic 45.0%
CAGAGGAGACACAAAACAGA+AGG + chr6_2:10053602-10053621 None:intergenic 45.0%
! CTTCTGTTTTGTGTCTCCTC+TGG - chr6_2:10053600-10053619 Msa0909000:intron 45.0%
ACAAGGAAGTCATTTGCCAG+AGG + chr6_2:10053619-10053638 None:intergenic 45.0%
CTGGCAAATGACTTCCTTGT+TGG - chr6_2:10053619-10053638 Msa0909000:intron 45.0%
ATGACTTCCTTGTTGGCATC+TGG - chr6_2:10053626-10053645 Msa0909000:intron 45.0%
ATGTACACCAGATGCCAACA+AGG + chr6_2:10053636-10053655 None:intergenic 45.0%
CAAAGCGTAAAACACACTGG+TGG + chr6_2:10053747-10053766 None:intergenic 45.0%
CATTAGCCAATGCAGCTCTA+TGG + chr6_2:10054074-10054093 None:intergenic 45.0%
!! AATTATTTAAAAAAAATTCA+TGG + chr6_2:10052423-10052442 None:intergenic 5.0%
CAGTTGAGGCATGCAAAGCA+TGG - chr6_2:10050357-10050376 Msa0909000:exon 50.0%
TTTATCCCGGTAAGTGGGGT+CGG + chr6_2:10050438-10050457 None:intergenic 50.0%
ATGTAGCCGACCCTACTTAC+CGG - chr6_2:10050508-10050527 Msa0909000:CDS 50.0%
CTTATCCCGGTAAGTAGGGT+CGG + chr6_2:10050517-10050536 None:intergenic 50.0%
TCTCCAGAACCTTTGACCGA+TGG + chr6_2:10050904-10050923 None:intergenic 50.0%
!! GGGGTGTAGCTTTGAGGAAA+AGG - chr6_2:10051032-10051051 Msa0909000:intron 50.0%
! CAATGAAGATGGTGGCATCC+TGG - chr6_2:10051101-10051120 Msa0909000:intron 50.0%
TCAGTGGCAGGAAATTCTGC+TGG - chr6_2:10051720-10051739 Msa0909000:CDS 50.0%
GCACTGCAGACATAGCTAAC+AGG + chr6_2:10051887-10051906 None:intergenic 50.0%
GTTAGCTATGTCTGCAGTGC+TGG - chr6_2:10051887-10051906 Msa0909000:CDS 50.0%
GGCATCGCATACGAAGAGAA+AGG - chr6_2:10051931-10051950 Msa0909000:CDS 50.0%
ATTGCGCTGGAGAGAAACTC+AGG - chr6_2:10052090-10052109 Msa0909000:intron 50.0%
GGAAGACTTACTGTGACAGC+AGG + chr6_2:10052123-10052142 None:intergenic 50.0%
GATTTCCGGCCATGTCTCTT+TGG - chr6_2:10052377-10052396 Msa0909000:intron 50.0%
AGAGTTTCATGCTGCCTGTG+TGG - chr6_2:10052908-10052927 Msa0909000:CDS 50.0%
ATGCTGCCTGTGTGGATTCT+TGG - chr6_2:10052916-10052935 Msa0909000:intron 50.0%
ACGCTTGCAAACTGGGCAAA+AGG + chr6_2:10052958-10052977 None:intergenic 50.0%
CTTGCATCACGCTTGCAAAC+TGG + chr6_2:10052966-10052985 None:intergenic 50.0%
TGCAAGCGTGATGCAAGAAC+GGG - chr6_2:10052969-10052988 Msa0909000:intron 50.0%
! AGAGGTGTGGATTCTGAAGG+TGG + chr6_2:10053008-10053027 None:intergenic 50.0%
! AGCAGAGGTGTGGATTCTGA+AGG + chr6_2:10053011-10053030 None:intergenic 50.0%
AAAGAGGATGCCGCAGATGA+CGG + chr6_2:10053044-10053063 None:intergenic 50.0%
TGACGGTAGGACCTTAGAGA+AGG + chr6_2:10053176-10053195 None:intergenic 50.0%
AGAGCTACGGCTGAAGCTTA+GGG + chr6_2:10053207-10053226 None:intergenic 50.0%
GATGGATAACCGATGGAACG+CGG + chr6_2:10053281-10053300 None:intergenic 50.0%
! GCTGACTCACTATATCGGAG+TGG + chr6_2:10053401-10053420 None:intergenic 50.0%
CGCAAATGGTGAGAAGCTTG+AGG + chr6_2:10053423-10053442 None:intergenic 50.0%
TCAACATTCCGGAAGGGAGT+TGG + chr6_2:10053450-10053469 None:intergenic 50.0%
CAGAAGGAGGGAATGTCGAT+GGG + chr6_2:10053586-10053605 None:intergenic 50.0%
ACAGAAGGAGGGAATGTCGA+TGG + chr6_2:10053587-10053606 None:intergenic 50.0%
ATGTAGCCGACCCCACTTAC+CGG - chr6_2:10050429-10050448 Msa0909000:CDS 55.0%
GGTAAGTAGGGTCGGCTACA+TGG + chr6_2:10050509-10050528 None:intergenic 55.0%
TGTAGCCGACCCTACTTACC+GGG - chr6_2:10050509-10050528 Msa0909000:CDS 55.0%
CGCCACCACAACCATCACAA+AGG + chr6_2:10050619-10050638 None:intergenic 55.0%
GCTCCATCGGTCAAAGGTTC+TGG - chr6_2:10050898-10050917 Msa0909000:CDS 55.0%
! TAGAGGGGGGTGTAGCTTTG+AGG - chr6_2:10051026-10051045 Msa0909000:intron 55.0%
CCTGCGGACGAAGAAACAAG+TGG + chr6_2:10051913-10051932 None:intergenic 55.0%
! CCACTTGTTTCTTCGTCCGC+AGG - chr6_2:10051910-10051929 Msa0909000:CDS 55.0%
CTCTTCGTATGCGATGCCTG+CGG + chr6_2:10051929-10051948 None:intergenic 55.0%
GAGACATGGCCGGAAATCCT+GGG + chr6_2:10052375-10052394 None:intergenic 55.0%
AGAGACATGGCCGGAAATCC+TGG + chr6_2:10052376-10052395 None:intergenic 55.0%
! GGTGTGGATTCTGAAGGTGG+TGG + chr6_2:10053005-10053024 None:intergenic 55.0%
!! GGTTGATGACAGCAGAGGTG+TGG + chr6_2:10053021-10053040 None:intergenic 55.0%
GTCATCAACCCCGTCATCTG+CGG - chr6_2:10053031-10053050 Msa0909000:intron 55.0%
AAGAGGATGCCGCAGATGAC+GGG + chr6_2:10053043-10053062 None:intergenic 55.0%
AGCTTAGGGAGGGGGATTGA+CGG + chr6_2:10053193-10053212 None:intergenic 55.0%
TACGGCTGAAGCTTAGGGAG+GGG + chr6_2:10053202-10053221 None:intergenic 55.0%
CTACGGCTGAAGCTTAGGGA+GGG + chr6_2:10053203-10053222 None:intergenic 55.0%
CAGAGCTACGGCTGAAGCTT+AGG + chr6_2:10053208-10053227 None:intergenic 55.0%
! AAGCTTCAGCCGTAGCTCTG+TGG - chr6_2:10053208-10053227 Msa0909000:intron 55.0%
! GCCGTAGCTCTGTGGATCTT+AGG - chr6_2:10053216-10053235 Msa0909000:intron 55.0%
GCTGATGACTGGATGAACCG+AGG + chr6_2:10053373-10053392 None:intergenic 55.0%
GAGTGGATGCTGCTGATGAC+TGG + chr6_2:10053384-10053403 None:intergenic 55.0%
AGGGAGTTGGCAGACGCAAA+TGG + chr6_2:10053437-10053456 None:intergenic 55.0%
GGAGGGAATGTCGATGGGTA+TGG + chr6_2:10053581-10053600 None:intergenic 55.0%
GTGTGCTATGGCGGCTGCTA+AGG - chr6_2:10050059-10050078 Msa0909000:three_prime_UTR 60.0%
GGTAAGTGGGGTCGGCTACA+TGG + chr6_2:10050430-10050449 None:intergenic 60.0%
TGTAGCCGACCCCACTTACC+GGG - chr6_2:10050430-10050449 Msa0909000:CDS 60.0%
GCGTGATGCAAGAACGGGTC+TGG - chr6_2:10052974-10052993 Msa0909000:intron 60.0%
!! GACGGGGTTGATGACAGCAG+AGG + chr6_2:10053026-10053045 None:intergenic 60.0%
AGAGGATGCCGCAGATGACG+GGG + chr6_2:10053042-10053061 None:intergenic 60.0%
TAGGGAGGGGGATTGACGGT+AGG + chr6_2:10053189-10053208 None:intergenic 60.0%
ACGGCTGAAGCTTAGGGAGG+GGG + chr6_2:10053201-10053220 None:intergenic 60.0%
GCTACGGCTGAAGCTTAGGG+AGG + chr6_2:10053204-10053223 None:intergenic 60.0%
TGCGTCTGCCAACTCCCTTC+CGG - chr6_2:10053439-10053458 Msa0909000:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 10049722 10054107 10049722 ID=Msa0909000;Name=Msa0909000
chr6_2 mRNA 10049722 10054107 10049722 ID=Msa0909000-mRNA-1;Parent=Msa0909000;Name=Msa0909000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=290|1|1|1|1|1|4|638|441
chr6_2 exon 10049722 10050919 10049722 ID=Msa0909000-mRNA-1:exon:2516;Parent=Msa0909000-mRNA-1
chr6_2 exon 10051698 10052105 10051698 ID=Msa0909000-mRNA-1:exon:2515;Parent=Msa0909000-mRNA-1
chr6_2 exon 10052700 10052930 10052700 ID=Msa0909000-mRNA-1:exon:2514;Parent=Msa0909000-mRNA-1
chr6_2 exon 10053691 10054107 10053691 ID=Msa0909000-mRNA-1:exon:2513;Parent=Msa0909000-mRNA-1
chr6_2 five_prime_UTR 10053818 10054107 10053818 ID=Msa0909000-mRNA-1:five_prime_utr;Parent=Msa0909000-mRNA-1
chr6_2 CDS 10053691 10053817 10053691 ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2 CDS 10052700 10052930 10052700 ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2 CDS 10051698 10052105 10051698 ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2 CDS 10050360 10050919 10050360 ID=Msa0909000-mRNA-1:cds;Parent=Msa0909000-mRNA-1
chr6_2 three_prime_UTR 10049722 10050359 10049722 ID=Msa0909000-mRNA-1:three_prime_utr;Parent=Msa0909000-mRNA-1
Gene Sequence

>Msa0909000

ATGGGTTCCTCGAATCTTTGCTTCTTTTTCTTCTCTTTGTTGAGTTTGTGTGCTATGGCGGCTGCTAAGGTTGTGTTGATTGGGAACAACATCACTCTCTCGTTTGATGATATTGAAGCTAATTTCGCTCCATCGGTCAAAGGTTCTGGAGAATACGGAGCCTTATTCTTGGCAGAGCCTCTTGATGCATGTACAGAACTTACGAATAAAGCTAGAACACTTTCGAATGCTAGTTCACCTTTTGTTTTGATGGTTAGAGGGGGGTGTAGCTTTGAGGAAAAGGTTAGGATTGCACAAAGTGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATACATGCGGTATTTGTTTCAAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGTTTAACTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCGTTCATTTCCCTGTTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATACGAAGAGAAAGGCCTCAAACTTCTTCTCATGTTCGTGAATTTCATGGCATGAGTAGTCGCTTAGTGAAAGCAATGCCAAGTTTGATTTTTACTTCTGCTTTGGAAGATAACTGTACATCAAGAACATGTGCCATCTGCCTTGAAGATTATTGCGCTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACGGGTCTGGCTGATCCACCACCTTCAGAATCCACACCTCTGCTGTCATCAACCCCGTCATCTGCGGCATCCTCTTTCGTGTCTTCTATGAGGTCATCATTTGCTTCATCTTCAGCAATACAAATTGGTTCACCGTCGCAATCTGTTTCTCGTAACCACTCTTTAGCAAGTACCCCTTACAATCAGCCTTCTCTAAGGTCCTACCGTCAATCCCCCTCCCTAAGCTTCAGCCGTAGCTCTGTGGATCTTAGGAACGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATCGGTTATCCATCTTTATCATCTCTTAACTCAAGATACTTGCCTTCACACATTCCAAGTCCAAGCAATGCTTCAGTAAGTTTCCTCGGTTCATCCAGTCATCAGCAGCATCCACTCCGATATAGTGAGTCAGCCTCAAGCTTCTCACCATTTGCGTCTGCCAACTCCCTTCCGGAATGTTGA

Protein sequence

>Msa0909000

MGSSNLCFFFFSLLSLCAMAAAKVVLIGNNITLSFDDIEANFAPSVKGSGEYGALFLAEPLDACTELTNKARTLSNASSPFVLMVRGGCSFEEKVRIAQSAGYKAAIVYDNEDGGILVAMAGNSAGIRIHAVFVSKASGEILKKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQTSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCAGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSTPSSAASSFVSSMRSSFASSSAIQIGSPSQSVSRNHSLASTPYNQPSLRSYRQSPSLSFSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYLPSHIPSPSNASVSFLGSSSHQQHPLRYSESASSFSPFASANSLPEC*