AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085360 MtrunA17_Chr1g0200721 97.959 441 9 0 1 441 1 441 0.0 875
Msa0085360 MtrunA17_Chr8g0370171 31.783 129 69 7 170 287 36 156 1.91e-12 66.2
Msa0085360 MtrunA17_Chr2g0297011 30.233 129 78 5 161 283 28 150 2.37e-12 65.1
Msa0085360 MtrunA17_Chr1g0169651 37.179 78 44 2 200 277 652 724 4.18e-12 68.2
Msa0085360 MtrunA17_Chr5g0408871 33.750 80 51 1 213 292 483 560 6.55e-12 67.4
Msa0085360 MtrunA17_Chr3g0112041 52.830 53 24 1 234 286 212 263 1.50e-11 64.7
Msa0085360 MtrunA17_Chr8g0345361 41.667 72 38 3 208 278 92 160 1.57e-11 64.3
Msa0085360 MtrunA17_Chr4g0031911 56.000 50 21 1 228 277 202 250 1.73e-11 64.7
Msa0085360 MtrunA17_Chr3g0132491 31.148 122 71 6 167 277 59 178 2.15e-11 65.1
Msa0085360 MtrunA17_Chr4g0031921 56.000 50 21 1 228 277 202 250 2.96e-11 63.9
Msa0085360 MtrunA17_Chr7g0246761 45.333 75 31 4 208 277 63 132 3.03e-11 62.4
Msa0085360 MtrunA17_Chr7g0274711 32.374 139 71 6 160 277 2 138 5.19e-11 61.6
Msa0085360 MtrunA17_Chr7g0274741 31.111 135 64 5 171 277 8 141 6.15e-11 61.2
Msa0085360 MtrunA17_Chr6g0451031 54.545 44 18 2 235 277 69 111 7.09e-11 59.7
Msa0085360 MtrunA17_Chr6g0451051 35.345 116 62 6 165 277 3 108 8.99e-11 60.1
Msa0085360 MtrunA17_Chr7g0244851 28.800 125 84 4 156 277 27 149 9.11e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085360 AT1G71980.1 65.837 442 137 4 13 441 8 448 0.0 526
Msa0085360 AT4G09560.1 51.474 441 181 11 20 439 18 446 3.38e-126 373
Msa0085360 AT1G35630.1 56.419 296 129 0 10 305 8 303 4.40e-120 353
Msa0085360 AT1G35625.1 55.776 303 120 2 10 305 8 303 1.20e-115 342
Msa0085360 AT1G22670.1 47.917 432 182 11 21 440 22 422 8.25e-114 341
Msa0085360 AT5G66160.1 44.485 272 141 5 13 282 16 279 9.08e-67 216
Msa0085360 AT5G66160.2 44.485 272 141 5 13 282 16 279 3.47e-66 214
Msa0085360 AT4G09120.1 29.545 220 139 7 162 374 47 257 1.27e-13 72.4
Msa0085360 AT5G07225.1 38.356 73 40 2 208 280 165 232 2.89e-12 66.6
Msa0085360 AT1G33480.1 32.432 148 86 7 208 344 75 219 8.22e-12 65.9
Msa0085360 AT3G18773.1 27.742 155 98 4 133 277 22 172 1.22e-11 64.7
Msa0085360 AT3G55530.1 54.000 50 22 1 234 283 210 258 1.60e-11 65.1
Msa0085360 AT1G20823.1 38.889 72 42 2 208 278 84 154 4.50e-11 62.4
Msa0085360 AT3G10910.1 40.278 72 40 3 208 278 88 157 5.02e-11 62.0
Msa0085360 AT4G09100.1 37.662 77 44 3 204 277 52 127 6.53e-11 60.5

Find 150 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATTTGTACATATATTAT+TGG 0.149050 1_2:+65427959 None:intergenic
ATGCTGCCTGTGTGGATTCT+TGG 0.196122 1_2:-65429018 Msa0085360:CDS
TTCTTTACATGTGATGATTA+TGG 0.223372 1_2:-65428255 Msa0085360:three_prime_UTR
AAAATCATCCAAAGAGAAAT+TGG 0.236083 1_2:+65431988 None:intergenic
TTTCTATTCAATTGCTTTGA+TGG 0.239348 1_2:-65431939 Msa0085360:exon
CAAAATCCCCAATTTCTCTT+TGG 0.270427 1_2:-65431996 Msa0085360:five_prime_UTR
TCATCTTCAGCAATACAAAT+TGG 0.282025 1_2:-65428842 Msa0085360:CDS
CTTGCATCACGCTTGCAAAC+TGG 0.302893 1_2:+65428971 None:intergenic
ATAATATTGTGACAGCAAAA+TGG 0.306240 1_2:+65432137 None:intergenic
TGTGTGAAGCTAGAGATCTT+TGG 0.332608 1_2:+65428687 None:intergenic
ATGACTTCCTTGTTGGCATC+TGG 0.337707 1_2:-65428308 Msa0085360:three_prime_UTR
GATGATATTGAAGCTAATTT+CGG 0.338035 1_2:-65431815 Msa0085360:intron
CAGAGCTACGGCTGAAGCTT+AGG 0.338278 1_2:+65428729 None:intergenic
GCTCCATCGGTCAAAGGTTC+TGG 0.338386 1_2:-65431038 Msa0085360:CDS
TCTCATGTTCGTGAATTTCA+TGG 0.340632 1_2:-65429969 Msa0085360:CDS
AAGAGGCTCTGCCAAGAATA+AGG 0.342445 1_2:+65431004 None:intergenic
TGCGTCTGCCAACTCCCTTC+CGG 0.343050 1_2:-65428495 Msa0085360:CDS
TGGATTCTTGGCTTACTTCA+TGG 0.348035 1_2:-65429006 Msa0085360:CDS
CTGGCAAATGACTTCCTTGT+TGG 0.353290 1_2:-65428315 Msa0085360:three_prime_UTR
CATTAGCCAATGCAGCTCTA+TGG 0.363582 1_2:+65427863 None:intergenic
GCTGCTAAGGTTGTGTTGAT+TGG 0.367855 1_2:-65431860 Msa0085360:CDS
GTATTTGTTTCAAAAGCTTC+GGG 0.371506 1_2:-65430176 Msa0085360:CDS
GGGGTGTAGCTTTGAGGAAA+AGG 0.371973 1_2:-65430904 Msa0085360:CDS
GGTATTTGTTTCAAAAGCTT+CGG 0.372526 1_2:-65430177 Msa0085360:CDS
TTCTATTCAATTGCTTTGAT+GGG 0.379978 1_2:-65431938 Msa0085360:exon
CTTAGAGAAGGCTGATTGTA+AGG 0.389822 1_2:+65428773 None:intergenic
GTTAGCTATGTCTGCAGTGC+TGG 0.390348 1_2:-65430048 Msa0085360:CDS
CAATAATATATGTACAAATT+CGG 0.399084 1_2:-65427958 Msa0085360:three_prime_UTR
CTCCAGCGCAATAATCTTCA+AGG 0.399738 1_2:+65429856 None:intergenic
GGAATGTTGAATTGTTCAAT+TGG 0.409738 1_2:-65428474 Msa0085360:exon
AAATCATCCAAAGAGAAATT+GGG 0.410830 1_2:+65431989 None:intergenic
CCACTTGTTTCTTCGTCCGC+AGG 0.412166 1_2:-65430025 Msa0085360:CDS
GCACTGCAGACATAGCTAAC+AGG 0.412818 1_2:+65430051 None:intergenic
GAGTGGATGCTGCTGATGAC+TGG 0.415213 1_2:+65428553 None:intergenic
TAATATTGTGACAGCAAAAT+GGG 0.415946 1_2:+65432138 None:intergenic
AGAATACGGAGCCTTATTCT+TGG 0.417360 1_2:-65431015 Msa0085360:CDS
ACATAATCTCATCATTCAAT+TGG 0.419264 1_2:+65428039 None:intergenic
CTGCTAAGGTTGTGTTGATT+GGG 0.421036 1_2:-65431859 Msa0085360:CDS
TTGCATCACGCTTGCAAACT+GGG 0.424562 1_2:+65428972 None:intergenic
GCGTGATGCAAGAACGGGTC+TGG 0.427986 1_2:-65428960 Msa0085360:CDS
GCCGTAGCTCTGTGGATCTT+AGG 0.428506 1_2:-65428718 Msa0085360:CDS
TAACTATACTTTGAAAATCA+AGG 0.436326 1_2:+65428146 None:intergenic
GTGTGCTATGGCGGCTGCTA+AGG 0.439742 1_2:-65431873 Msa0085360:CDS
GTGTGAAGCTAGAGATCTTT+GGG 0.442142 1_2:+65428688 None:intergenic
ACTGTTGAAGTTAGATGATA+AGG 0.442928 1_2:+65427987 None:intergenic
ATAGACTGACGGTCATCATT+TGG 0.445069 1_2:+65428381 None:intergenic
TTTGTTGAGTTTGTGTGCTA+TGG 0.453295 1_2:-65431885 Msa0085360:CDS
AAGAGGATGCCGCAGATGAC+GGG 0.460435 1_2:+65428894 None:intergenic
TTTAAACCATAGAGCTGCAT+TGG 0.462193 1_2:-65427869 Msa0085360:three_prime_UTR
CTTACAATCAGCCTTCTCTA+AGG 0.462445 1_2:-65428772 Msa0085360:CDS
TGCCTTGAAGATTATTGCGC+TGG 0.467679 1_2:-65429858 Msa0085360:CDS
AGAGCTACGGCTGAAGCTTA+GGG 0.468094 1_2:+65428730 None:intergenic
AATTGAACAATTCAACATTC+CGG 0.470205 1_2:+65428476 None:intergenic
GGAGGGAATGTCGATGGGTA+TGG 0.470908 1_2:+65428356 None:intergenic
ACGCTTGCAAACTGGGCAAA+AGG 0.471145 1_2:+65428979 None:intergenic
AAACTTACTGAAGCATTGCT+TGG 0.472660 1_2:+65428587 None:intergenic
TGCAAGCGTGATGCAAGAAC+GGG 0.474555 1_2:-65428965 Msa0085360:CDS
TTGAGGCTGACTCACTATAT+CGG 0.477494 1_2:+65428531 None:intergenic
GTCAAAGGTTCTGGAGAATA+CGG 0.481854 1_2:-65431029 Msa0085360:CDS
GTTCAATGACTCGGCAATCA+CGG 0.495171 1_2:+65428414 None:intergenic
ACTGAAGCATTGCTTGGACT+TGG 0.496274 1_2:+65428593 None:intergenic
TTCAATGACTCGGCAATCAC+GGG 0.501128 1_2:+65428415 None:intergenic
CGAACATGAGAAGAAGTTTG+AGG 0.503157 1_2:+65429981 None:intergenic
CGCTCATTAGTTCAATGACT+CGG 0.503715 1_2:+65428405 None:intergenic
GTAGCTTTGAGGAAAAGGTT+AGG 0.503932 1_2:-65430899 Msa0085360:CDS
ACGGCTGAAGCTTAGGGAGG+GGG 0.504414 1_2:+65428736 None:intergenic
TCAACATTCCGGAAGGGAGT+TGG 0.506625 1_2:+65428487 None:intergenic
CCTCTAACCATCAAAACAAA+AGG 0.508806 1_2:+65430927 None:intergenic
GTTAGGATTGCACAAAGTGC+TGG 0.514958 1_2:-65430882 Msa0085360:CDS
ATGAATTCACCGCGTTCCAT+CGG 0.515963 1_2:-65428665 Msa0085360:CDS
AATGCTTCAGTAAGTTTCCT+CGG 0.522483 1_2:-65428581 Msa0085360:CDS
ATGAGATTATGTGATACTCT+TGG 0.523072 1_2:-65428028 Msa0085360:three_prime_UTR
AGGGAGTTGGCAGACGCAAA+TGG 0.523123 1_2:+65428500 None:intergenic
CAATGAAGATGGTGGCATCC+TGG 0.526957 1_2:-65430835 Msa0085360:CDS
CCTCTTTCGTGTCTTCTATG+AGG 0.529305 1_2:-65428877 Msa0085360:CDS
AAAGAGGATGCCGCAGATGA+CGG 0.530793 1_2:+65428893 None:intergenic
GGAAGACTTACTGTGACAGC+AGG 0.533020 1_2:+65429815 None:intergenic
AGGAGACACAAAACAGAAGG+AGG 0.533663 1_2:+65428338 None:intergenic
TTGCAAGCGTGATGCAAGAA+CGG 0.539276 1_2:-65428966 Msa0085360:CDS
TACGGCTGAAGCTTAGGGAG+GGG 0.539291 1_2:+65428735 None:intergenic
ATACACTGGTTTAACTAATG+TGG 0.540905 1_2:-65430138 Msa0085360:CDS
TCCTAAGATCCACAGAGCTA+CGG 0.545254 1_2:+65428717 None:intergenic
AAACTCAGCATGGTCTATCA+TGG 0.545970 1_2:-65430090 Msa0085360:CDS
AATTTGCTTATAATAGTGAC+AGG 0.547391 1_2:-65432207 Msa0085360:five_prime_UTR
AAGAAAACAGAGAGCATCAA+AGG 0.548255 1_2:-65432100 Msa0085360:five_prime_UTR
AATATATGTACAAATTCGGT+GGG 0.551101 1_2:-65427954 Msa0085360:three_prime_UTR
ATTGCGCTGGAGAGAAACTC+AGG 0.554269 1_2:-65429845 Msa0085360:CDS
TTAGAGAAGGCTGATTGTAA+GGG 0.554606 1_2:+65428774 None:intergenic
TCAGTGGCAGGAAATTCTGC+TGG 0.554718 1_2:-65430215 Msa0085360:intron
ATTTCAGCTCCATCGGTCAA+AGG 0.556014 1_2:-65431044 Msa0085360:intron
TAATATATGTACAAATTCGG+TGG 0.557205 1_2:-65427955 Msa0085360:three_prime_UTR
ATATGATTGAGATGTCTTTG+CGG 0.558850 1_2:-65428443 Msa0085360:three_prime_UTR
GTCATCAACCCCGTCATCTG+CGG 0.562171 1_2:-65428903 Msa0085360:CDS
GCTGCTAACAAGAGAAATGT+TGG 0.562365 1_2:-65428119 Msa0085360:three_prime_UTR
GAGTTAAGAGATGATAAAGA+TGG 0.565530 1_2:+65428638 None:intergenic
GAACAATTCAACATTCCGGA+AGG 0.572328 1_2:+65428480 None:intergenic
CACTGCAGACATAGCTAACA+GGG 0.573295 1_2:+65430052 None:intergenic
TCTCCAGAACCTTTGACCGA+TGG 0.573751 1_2:+65431035 None:intergenic
ACAGAAGGAGGGAATGTCGA+TGG 0.576650 1_2:+65428350 None:intergenic
GCAATAATCTTCAAGGCAGA+TGG 0.580122 1_2:+65429863 None:intergenic
GTTGAGTTTGTGTGCTATGG+CGG 0.580366 1_2:-65431882 Msa0085360:CDS
TGCTTATAATAGTGACAGGA+GGG 0.580655 1_2:-65432203 Msa0085360:five_prime_UTR
AGCATCAAAGGAATAGAACA+AGG 0.586048 1_2:-65432088 Msa0085360:five_prime_UTR
TGATAAAGATGGATAACCGA+TGG 0.589393 1_2:+65428649 None:intergenic
CCTCATAGAAGACACGAAAG+AGG 0.590401 1_2:+65428877 None:intergenic
AGATAGATAGATATGTATGT+TGG 0.595258 1_2:-65427910 Msa0085360:three_prime_UTR
ATTGTCTATGACAATGAAGA+TGG 0.598093 1_2:-65430846 Msa0085360:CDS
AATCATCCAAAGAGAAATTG+GGG 0.599598 1_2:+65431990 None:intergenic
AAGCTTCAGCCGTAGCTCTG+TGG 0.606819 1_2:-65428726 Msa0085360:CDS
GGTTGATGACAGCAGAGGTG+TGG 0.607896 1_2:+65428916 None:intergenic
GGCATCGCATACGAAGAGAA+AGG 0.608323 1_2:-65430004 Msa0085360:CDS
GTTTAACTAATGTGGAAACA+TGG 0.611755 1_2:-65430130 Msa0085360:CDS
AACAATTCAACATTCCGGAA+GGG 0.612915 1_2:+65428481 None:intergenic
AAGGGGTACTTGCTAAAGAG+TGG 0.614377 1_2:+65428792 None:intergenic
AGAGGATGCCGCAGATGACG+GGG 0.616002 1_2:+65428895 None:intergenic
GCTACGGCTGAAGCTTAGGG+AGG 0.617291 1_2:+65428733 None:intergenic
TTGCTTATAATAGTGACAGG+AGG 0.619028 1_2:-65432204 Msa0085360:five_prime_UTR
AGAGTTTCATGCTGCCTGTG+TGG 0.623183 1_2:-65429026 Msa0085360:CDS
CAGAGGAGACACAAAACAGA+AGG 0.623406 1_2:+65428335 None:intergenic
CAGAAGGAGGGAATGTCGAT+GGG 0.625784 1_2:+65428351 None:intergenic
AGTTCTGTACATGCATCAAG+AGG 0.627860 1_2:+65430987 None:intergenic
GGAGACACAAAACAGAAGGA+GGG 0.627881 1_2:+65428339 None:intergenic
CTACGGCTGAAGCTTAGGGA+GGG 0.629238 1_2:+65428734 None:intergenic
TGACGGTAGGACCTTAGAGA+AGG 0.630058 1_2:+65428761 None:intergenic
CTTGGACTTGGAATGTGTGA+AGG 0.631090 1_2:+65428605 None:intergenic
GAAATACTAAAGAAATACAC+TGG 0.632691 1_2:-65430152 Msa0085360:CDS
TGCTGGTATAAGAATACATG+CGG 0.638072 1_2:-65430198 Msa0085360:CDS
TAGAGAAGGCTGATTGTAAG+GGG 0.638407 1_2:+65428775 None:intergenic
GGTGTGGATTCTGAAGGTGG+TGG 0.642431 1_2:+65428932 None:intergenic
CTCTTCGTATGCGATGCCTG+CGG 0.646212 1_2:+65430009 None:intergenic
ATTGGTCATTACTTGCAACC+AGG 0.654527 1_2:+65430817 None:intergenic
GATGGATAACCGATGGAACG+CGG 0.656285 1_2:+65428656 None:intergenic
CGCAAATGGTGAGAAGCTTG+AGG 0.656667 1_2:+65428514 None:intergenic
ATGTACACCAGATGCCAACA+AGG 0.658962 1_2:+65428301 None:intergenic
AATCAAAGCGTAAAACACAC+TGG 0.667954 1_2:+65428187 None:intergenic
AGAGGTGTGGATTCTGAAGG+TGG 0.668803 1_2:+65428929 None:intergenic
CGAGTCATTGAACTAATGAG+CGG 0.677812 1_2:-65428404 Msa0085360:three_prime_UTR
GAAGACTTACTGTGACAGCA+GGG 0.683669 1_2:+65429816 None:intergenic
GACGGGGTTGATGACAGCAG+AGG 0.693540 1_2:+65428911 None:intergenic
AGCAGAGGTGTGGATTCTGA+AGG 0.694144 1_2:+65428926 None:intergenic
ACAAGGAAGTCATTTGCCAG+AGG 0.695574 1_2:+65428318 None:intergenic
TGGGTATGGACATAGACTGA+CGG 0.695823 1_2:+65428370 None:intergenic
GCATCAAAGGAATAGAACAA+GGG 0.703114 1_2:-65432087 Msa0085360:five_prime_UTR
CCTGCGGACGAAGAAACAAG+TGG 0.703165 1_2:+65430025 None:intergenic
GTCTATGACAATGAAGATGG+TGG 0.704480 1_2:-65430843 Msa0085360:CDS
GCTGACTCACTATATCGGAG+TGG 0.710724 1_2:+65428536 None:intergenic
GCTGATGACTGGATGAACCG+AGG 0.715695 1_2:+65428564 None:intergenic
CAAAGCGTAAAACACACTGG+TGG 0.737621 1_2:+65428190 None:intergenic
TTACGAGAAACAGATTGCGA+CGG 0.739626 1_2:+65428815 None:intergenic
AGTAAGCCAAGAATCCACAC+AGG 0.748693 1_2:+65429012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAATCAAATGATTT+TGG + chr1_2:65430658-65430677 None:intergenic 10.0%
!!! TTTTTCTTTCTTTATTAGAT+AGG + chr1_2:65428411-65428430 None:intergenic 15.0%
!! TTTAATCACAAAAATAAATC+CGG + chr1_2:65428849-65428868 None:intergenic 15.0%
!!! TTGTTATGTCTTTTTTTTTA+TGG + chr1_2:65429490-65429509 None:intergenic 15.0%
!!! TTTTTATCCTATATTGTATT+TGG + chr1_2:65429666-65429685 None:intergenic 15.0%
!! GATAAATTATAATTTCTGAT+TGG - chr1_2:65429808-65429827 Msa0085360:intron 15.0%
!! CAATAATATATGTACAAATT+CGG - chr1_2:65432101-65432120 Msa0085360:five_prime_UTR 15.0%
!!! TGAATAGGATTTTGATTTTA+TGG - chr1_2:65428324-65428343 Msa0085360:three_prime_UTR 20.0%
!! ACTTATATTAGGTAACATTA+TGG - chr1_2:65428595-65428614 Msa0085360:CDS 20.0%
!!! ATTAAATTTGTGCTTTGTTT+GGG - chr1_2:65428863-65428882 Msa0085360:CDS 20.0%
!!! TGAAATTATTTTACAGAAGT+TGG - chr1_2:65429533-65429552 Msa0085360:intron 20.0%
!! TTCATTATTACAATATCTCT+TGG - chr1_2:65429564-65429583 Msa0085360:intron 20.0%
!! TGATAATCCAAATACAATAT+AGG - chr1_2:65429656-65429675 Msa0085360:intron 20.0%
!! TAGGATAAAAAATTGAAACT+TGG - chr1_2:65429675-65429694 Msa0085360:intron 20.0%
!! GCAATAATGTAAAATCTATA+AGG - chr1_2:65429697-65429716 Msa0085360:intron 20.0%
!! AAATTATAATTTCTGATTGG+TGG - chr1_2:65429811-65429830 Msa0085360:intron 20.0%
!! TTTGAAAAAGGGAAAAAAAT+TGG + chr1_2:65430274-65430293 None:intergenic 20.0%
!! AATACACTGAATTTGAAAAA+GGG + chr1_2:65430285-65430304 None:intergenic 20.0%
!!! AAATAATTTCTATTCTGAGA+CGG - chr1_2:65430559-65430578 Msa0085360:intron 20.0%
!!! TTCTAATTCAATTTTTTTCC+TGG - chr1_2:65430998-65431017 Msa0085360:CDS 20.0%
!!! TAACTATACTTTGAAAATCA+AGG + chr1_2:65431916-65431935 None:intergenic 20.0%
!! CGAATTTGTACATATATTAT+TGG + chr1_2:65432103-65432122 None:intergenic 20.0%
!! AATTTGCTTATAATAGTGAC+AGG - chr1_2:65427852-65427871 Msa0085360:three_prime_UTR 25.0%
! TAATATTGTGACAGCAAAAT+GGG + chr1_2:65427924-65427943 None:intergenic 25.0%
! ATAATATTGTGACAGCAAAA+TGG + chr1_2:65427925-65427944 None:intergenic 25.0%
!!! GATTTTGAAAATTAGGGTTT+CGG + chr1_2:65428050-65428069 None:intergenic 25.0%
!!! ATTGGGGATTTTGAAAATTA+GGG + chr1_2:65428056-65428075 None:intergenic 25.0%
!!! AATTGGGGATTTTGAAAATT+AGG + chr1_2:65428057-65428076 None:intergenic 25.0%
! AAATCATCCAAAGAGAAATT+GGG + chr1_2:65428073-65428092 None:intergenic 25.0%
! AAAATCATCCAAAGAGAAAT+TGG + chr1_2:65428074-65428093 None:intergenic 25.0%
! TTTCTATTCAATTGCTTTGA+TGG - chr1_2:65428120-65428139 Msa0085360:three_prime_UTR 25.0%
! TTCTATTCAATTGCTTTGAT+GGG - chr1_2:65428121-65428140 Msa0085360:three_prime_UTR 25.0%
! GATGATATTGAAGCTAATTT+CGG - chr1_2:65428244-65428263 Msa0085360:three_prime_UTR 25.0%
! TTTATGGAATTTGTGACTAT+TGG - chr1_2:65428340-65428359 Msa0085360:three_prime_UTR 25.0%
! AAAAAAGAAAGAGAGAGAAA+AGG - chr1_2:65428426-65428445 Msa0085360:three_prime_UTR 25.0%
! TTGGTTGTTGTACTTATATT+AGG - chr1_2:65428584-65428603 Msa0085360:CDS 25.0%
!! TCTAGAATATAACTATAGAG+AGG + chr1_2:65428709-65428728 None:intergenic 25.0%
!! AAGTATATGCTTTAAGTCTA+TGG + chr1_2:65428775-65428794 None:intergenic 25.0%
! TATATTCCGGAATTTATCTT+AGG + chr1_2:65428804-65428823 None:intergenic 25.0%
! ATAAATCCGGAATTTATCTT+AGG + chr1_2:65428836-65428855 None:intergenic 25.0%
!! GATTAAATTTGTGCTTTGTT+TGG - chr1_2:65428862-65428881 Msa0085360:CDS 25.0%
!!! TTAAATTTGTGCTTTGTTTG+GGG - chr1_2:65428864-65428883 Msa0085360:CDS 25.0%
! TATAGTATTGCATTTGATTG+TGG - chr1_2:65428942-65428961 Msa0085360:CDS 25.0%
!! TCTCTTTTTGTTAACATGAA+TGG - chr1_2:65428986-65429005 Msa0085360:CDS 25.0%
! ATGTTGCTACATAAAACAAT+TGG + chr1_2:65429263-65429282 None:intergenic 25.0%
! TTATTACAATATCTCTTGGA+AGG - chr1_2:65429568-65429587 Msa0085360:intron 25.0%
! AATTTATCAGAATATGACTC+AGG + chr1_2:65429796-65429815 None:intergenic 25.0%
! GAAATACTAAAGAAATACAC+TGG - chr1_2:65429907-65429926 Msa0085360:CDS 25.0%
!!! TTTGATTTTTACTTCTGCTT+TGG - chr1_2:65430146-65430165 Msa0085360:CDS 25.0%
! AAAGGGAAAAAAATTGGAAT+GGG + chr1_2:65430268-65430287 None:intergenic 25.0%
! AAAAGGGAAAAAAATTGGAA+TGG + chr1_2:65430269-65430288 None:intergenic 25.0%
! CAATACACTGAATTTGAAAA+AGG + chr1_2:65430286-65430305 None:intergenic 25.0%
! TTTCAAATTCAGTGTATTGT+TGG - chr1_2:65430287-65430306 Msa0085360:intron 25.0%
! TACTGTGTGCAATTTATTAT+TGG - chr1_2:65430338-65430357 Msa0085360:intron 25.0%
! TGTGCAATTTATTATTGGAT+TGG - chr1_2:65430343-65430362 Msa0085360:intron 25.0%
! TATAAATGCCAGTTATTATC+TGG - chr1_2:65430430-65430449 Msa0085360:intron 25.0%
! CACAGTTCAAACAAATTAAA+TGG + chr1_2:65430734-65430753 None:intergenic 25.0%
!!! CATTTAATTTGTTTGAACTG+TGG - chr1_2:65430732-65430751 Msa0085360:intron 25.0%
! ACAAAGAAAAACAAGAAACT+AGG + chr1_2:65430854-65430873 None:intergenic 25.0%
! ATGTACTAGTAACTTCAAAA+CGG + chr1_2:65430944-65430963 None:intergenic 25.0%
! AATTGAACAATTCAACATTC+CGG + chr1_2:65431586-65431605 None:intergenic 25.0%
! TTCTTTACATGTGATGATTA+TGG - chr1_2:65431804-65431823 Msa0085360:intron 25.0%
!! TTATGGTTCTTACATTTTTC+AGG - chr1_2:65431821-65431840 Msa0085360:CDS 25.0%
! ACATAATCTCATCATTCAAT+TGG + chr1_2:65432023-65432042 None:intergenic 25.0%
! TAATATATGTACAAATTCGG+TGG - chr1_2:65432104-65432123 Msa0085360:five_prime_UTR 25.0%
! AATATATGTACAAATTCGGT+GGG - chr1_2:65432105-65432124 Msa0085360:five_prime_UTR 25.0%
! AGATAGATAGATATGTATGT+TGG - chr1_2:65432149-65432168 Msa0085360:five_prime_UTR 25.0%
AATCATCCAAAGAGAAATTG+GGG + chr1_2:65428072-65428091 None:intergenic 30.0%
! AGCACGAAAGATTAGATTTT+TGG + chr1_2:65428100-65428119 None:intergenic 30.0%
!!! TTGTTTTTTGCCTTCGAATT+TGG - chr1_2:65428273-65428292 Msa0085360:three_prime_UTR 30.0%
! TGATTTCAGCTAGTTTGAAT+AGG - chr1_2:65428309-65428328 Msa0085360:three_prime_UTR 30.0%
ACTATTGGAAATTCTTACAC+TGG - chr1_2:65428355-65428374 Msa0085360:three_prime_UTR 30.0%
AAAAGGATTTGAATTGATGC+TGG - chr1_2:65428443-65428462 Msa0085360:three_prime_UTR 30.0%
AATATGTCAACAAACAGTTG+AGG - chr1_2:65428466-65428485 Msa0085360:three_prime_UTR 30.0%
AATTTGTGTTTCCTTTGTGA+TGG - chr1_2:65428728-65428747 Msa0085360:CDS 30.0%
TCATGTTAACAAAAAGAGAC+AGG + chr1_2:65428985-65429004 None:intergenic 30.0%
!!! TAGTTCACCTTTTGTTTTGA+TGG - chr1_2:65429125-65429144 Msa0085360:intron 30.0%
!!! CTTTTGTTTTGATGGTTAGA+GGG - chr1_2:65429133-65429152 Msa0085360:intron 30.0%
!!! TTTTGTTTTGATGGTTAGAG+GGG - chr1_2:65429134-65429153 Msa0085360:intron 30.0%
ATTGTCTATGACAATGAAGA+TGG - chr1_2:65429213-65429232 Msa0085360:intron 30.0%
! GCAAAAACGTTTCTAGATAA+TGG + chr1_2:65429416-65429435 None:intergenic 30.0%
GAAATCAATCCAACAAGAAA+TGG + chr1_2:65429733-65429752 None:intergenic 30.0%
!!! TGGTGGTTTTTTAATTTCAG+TGG - chr1_2:65429828-65429847 Msa0085360:CDS 30.0%
GGTATTTGTTTCAAAAGCTT+CGG - chr1_2:65429882-65429901 Msa0085360:CDS 30.0%
GTATTTGTTTCAAAAGCTTC+GGG - chr1_2:65429883-65429902 Msa0085360:CDS 30.0%
!! ATACACTGGTTTAACTAATG+TGG - chr1_2:65429921-65429940 Msa0085360:CDS 30.0%
GTTTAACTAATGTGGAAACA+TGG - chr1_2:65429929-65429948 Msa0085360:CDS 30.0%
GCAGAAGTAAAAATCAAACT+TGG + chr1_2:65430144-65430163 None:intergenic 30.0%
AAAGTTAACACCAATGTGTA+AGG + chr1_2:65430399-65430418 None:intergenic 30.0%
ACAATAAAACCAAAGAGACA+TGG + chr1_2:65430513-65430532 None:intergenic 30.0%
AAAAAATGCTGACCAAAAAC+AGG - chr1_2:65430679-65430698 Msa0085360:intron 30.0%
GACTAAACTGATGATATACT+GGG + chr1_2:65430799-65430818 None:intergenic 30.0%
AGAAAAACAAGAAACTAGGA+AGG + chr1_2:65430850-65430869 None:intergenic 30.0%
TGTACTAGTAACTTCAAAAC+GGG + chr1_2:65430943-65430962 None:intergenic 30.0%
TCATCTTCAGCAATACAAAT+TGG - chr1_2:65431217-65431236 Msa0085360:intron 30.0%
GAGTTAAGAGATGATAAAGA+TGG + chr1_2:65431424-65431443 None:intergenic 30.0%
GGAATGTTGAATTGTTCAAT+TGG - chr1_2:65431585-65431604 Msa0085360:intron 30.0%
ATATGATTGAGATGTCTTTG+CGG - chr1_2:65431616-65431635 Msa0085360:intron 30.0%
ATGAGATTATGTGATACTCT+TGG - chr1_2:65432031-65432050 Msa0085360:five_prime_UTR 30.0%
ACTGTTGAAGTTAGATGATA+AGG + chr1_2:65432075-65432094 None:intergenic 30.0%
TTGCTTATAATAGTGACAGG+AGG - chr1_2:65427855-65427874 Msa0085360:three_prime_UTR 35.0%
TGCTTATAATAGTGACAGGA+GGG - chr1_2:65427856-65427875 Msa0085360:three_prime_UTR 35.0%
!! AAGAAAACAGAGAGCATCAA+AGG - chr1_2:65427959-65427978 Msa0085360:three_prime_UTR 35.0%
AGCATCAAAGGAATAGAACA+AGG - chr1_2:65427971-65427990 Msa0085360:three_prime_UTR 35.0%
GCATCAAAGGAATAGAACAA+GGG - chr1_2:65427972-65427991 Msa0085360:three_prime_UTR 35.0%
!! GGGAACATTCATTTTTGACA+TGG - chr1_2:65427992-65428011 Msa0085360:three_prime_UTR 35.0%
CAAAATCCCCAATTTCTCTT+TGG - chr1_2:65428063-65428082 Msa0085360:three_prime_UTR 35.0%
GAAAAAGAAGCAAAGATTCG+AGG + chr1_2:65428149-65428168 None:intergenic 35.0%
TTTGTTGAGTTTGTGTGCTA+TGG - chr1_2:65428174-65428193 Msa0085360:three_prime_UTR 35.0%
AACACAGAATCCAAATTCGA+AGG + chr1_2:65428286-65428305 None:intergenic 35.0%
!! TCTTACACTGGTAGTGTTTT+TGG - chr1_2:65428367-65428386 Msa0085360:three_prime_UTR 35.0%
!! AAAGTTTTATCCCGGTAAGT+GGG + chr1_2:65428566-65428585 None:intergenic 35.0%
!! CAACAACCAAAGTTTTATCC+CGG + chr1_2:65428574-65428593 None:intergenic 35.0%
GCCATTCCTAAGATAAATTC+CGG - chr1_2:65428795-65428814 Msa0085360:CDS 35.0%
TCCGGAATTTATCTTAGGAA+TGG + chr1_2:65428799-65428818 None:intergenic 35.0%
TAGGAATGGCAAGTATATTC+CGG + chr1_2:65428817-65428836 None:intergenic 35.0%
GCCATTCCTAAGATAAATTC+CGG - chr1_2:65428795-65428814 Msa0085360:CDS 35.0%
TCCGGAATTTATCTTAGGAA+TGG + chr1_2:65428799-65428818 None:intergenic 35.0%
CCTCTAACCATCAAAACAAA+AGG + chr1_2:65429135-65429154 None:intergenic 35.0%
!!! CCTTTTGTTTTGATGGTTAG+AGG - chr1_2:65429132-65429151 Msa0085360:intron 35.0%
!!! TTTGTTTTGATGGTTAGAGG+GGG - chr1_2:65429135-65429154 Msa0085360:intron 35.0%
AAATGCTAATGTGAGTTGTC+TGG - chr1_2:65429344-65429363 Msa0085360:intron 35.0%
TCTCTTGGAAGGAAAATATC+AGG - chr1_2:65429579-65429598 Msa0085360:intron 35.0%
CTCTTGGAAGGAAAATATCA+GGG - chr1_2:65429580-65429599 Msa0085360:intron 35.0%
GTGCATATTGAACAACATTC+TGG - chr1_2:65429620-65429639 Msa0085360:intron 35.0%
CAACAAGAAATGGTCATCAA+TGG + chr1_2:65429723-65429742 None:intergenic 35.0%
! CATTGATGACCATTTCTTGT+TGG - chr1_2:65429721-65429740 Msa0085360:intron 35.0%
!!! GGTTTTTTAATTTCAGTGGC+AGG - chr1_2:65429832-65429851 Msa0085360:CDS 35.0%
TGCTGGTATAAGAATACATG+CGG - chr1_2:65429861-65429880 Msa0085360:CDS 35.0%
! CATGCTGAGTTTTCAAAAGT+TGG + chr1_2:65429961-65429980 None:intergenic 35.0%
!! CAACTTTTGAAAACTCAGCA+TGG - chr1_2:65429959-65429978 Msa0085360:CDS 35.0%
TCTCATGTTCGTGAATTTCA+TGG - chr1_2:65430090-65430109 Msa0085360:CDS 35.0%
GCTTTCATATGTCTCAACAA+AGG + chr1_2:65430377-65430396 None:intergenic 35.0%
CATATGAAAGCCTTACACAT+TGG - chr1_2:65430386-65430405 Msa0085360:intron 35.0%
CTCATTTGCCAGATAATAAC+TGG + chr1_2:65430441-65430460 None:intergenic 35.0%
ATGAGAATGTCTTTGTCATG+AGG - chr1_2:65430456-65430475 Msa0085360:intron 35.0%
CTCTCGTATTGTTAAAGACA+AGG + chr1_2:65430769-65430788 None:intergenic 35.0%
GGACTAAACTGATGATATAC+TGG + chr1_2:65430800-65430819 None:intergenic 35.0%
TTCATCAGGGATAAAGGTAA+TGG + chr1_2:65430821-65430840 None:intergenic 35.0%
GAAACAACATATCAATAGCC+AGG + chr1_2:65430898-65430917 None:intergenic 35.0%
TTAGAGAAGGCTGATTGTAA+GGG + chr1_2:65431288-65431307 None:intergenic 35.0%
TGATAAAGATGGATAACCGA+TGG + chr1_2:65431413-65431432 None:intergenic 35.0%
!! AAACTTACTGAAGCATTGCT+TGG + chr1_2:65431475-65431494 None:intergenic 35.0%
AATGCTTCAGTAAGTTTCCT+CGG - chr1_2:65431478-65431497 Msa0085360:intron 35.0%
AACAATTCAACATTCCGGAA+GGG + chr1_2:65431581-65431600 None:intergenic 35.0%
!!! GGTTCTTACATTTTTCAGGT+TGG - chr1_2:65431825-65431844 Msa0085360:CDS 35.0%
AATCAAAGCGTAAAACACAC+TGG + chr1_2:65431875-65431894 None:intergenic 35.0%
TTTAAACCATAGAGCTGCAT+TGG - chr1_2:65432190-65432209 Msa0085360:five_prime_UTR 35.0%
!! CTGCTAAGGTTGTGTTGATT+GGG - chr1_2:65428200-65428219 Msa0085360:three_prime_UTR 40.0%
!! AAGTTTTATCCCGGTAAGTG+GGG + chr1_2:65428565-65428584 None:intergenic 40.0%
!! CAAAGTTTTATCCCGGTAAG+TGG + chr1_2:65428567-65428586 None:intergenic 40.0%
CACTTACCGGGATAAAACTT+TGG - chr1_2:65428565-65428584 Msa0085360:CDS 40.0%
! AAGTCTTATCCCGGTAAGTA+GGG + chr1_2:65428644-65428663 None:intergenic 40.0%
! AAAGTCTTATCCCGGTAAGT+AGG + chr1_2:65428645-65428664 None:intergenic 40.0%
TACTTACCGGGATAAGACTT+TGG - chr1_2:65428644-65428663 Msa0085360:CDS 40.0%
! CAACAACCAAAGTCTTATCC+CGG + chr1_2:65428653-65428672 None:intergenic 40.0%
TGTTTCCTTTGTGATGGTTG+TGG - chr1_2:65428734-65428753 Msa0085360:CDS 40.0%
!! TGCTTTGTTTGGGGAAAAGA+TGG - chr1_2:65428873-65428892 Msa0085360:CDS 40.0%
!!! GCTTTTGATTTCAGCTCCAT+CGG - chr1_2:65429008-65429027 Msa0085360:CDS 40.0%
!! GTCAAAGGTTCTGGAGAATA+CGG - chr1_2:65429030-65429049 Msa0085360:intron 40.0%
!! AGAATACGGAGCCTTATTCT+TGG - chr1_2:65429044-65429063 Msa0085360:intron 40.0%
AGTTCTGTACATGCATCAAG+AGG + chr1_2:65429075-65429094 None:intergenic 40.0%
!!! TTGTTTTGATGGTTAGAGGG+GGG - chr1_2:65429136-65429155 Msa0085360:intron 40.0%
!! GTAGCTTTGAGGAAAAGGTT+AGG - chr1_2:65429160-65429179 Msa0085360:intron 40.0%
GTCTATGACAATGAAGATGG+TGG - chr1_2:65429216-65429235 Msa0085360:intron 40.0%
ATTGGTCATTACTTGCAACC+AGG + chr1_2:65429245-65429264 None:intergenic 40.0%
AACAACATTCTGGACAAGCT+TGG - chr1_2:65429630-65429649 Msa0085360:intron 40.0%
AAACTCAGCATGGTCTATCA+TGG - chr1_2:65429969-65429988 Msa0085360:CDS 40.0%
CGAACATGAGAAGAAGTTTG+AGG + chr1_2:65430081-65430100 None:intergenic 40.0%
GCAATAATCTTCAAGGCAGA+TGG + chr1_2:65430199-65430218 None:intergenic 40.0%
TAAAACCAAAGAGACATGGC+CGG + chr1_2:65430509-65430528 None:intergenic 40.0%
! ACCAAAAACAGGTTTGCTTG+AGG - chr1_2:65430690-65430709 Msa0085360:intron 40.0%
! TCCTCAAGCAAACCTGTTTT+TGG + chr1_2:65430694-65430713 None:intergenic 40.0%
AAATGGAACACGAGTGTACT+AGG + chr1_2:65430717-65430736 None:intergenic 40.0%
CCTCATTTCATCAGGGATAA+AGG + chr1_2:65430827-65430846 None:intergenic 40.0%
CCTTTATCCCTGATGAAATG+AGG - chr1_2:65430824-65430843 Msa0085360:intron 40.0%
! CGATTTTACTATACGCTTCC+TGG - chr1_2:65430877-65430896 Msa0085360:CDS 40.0%
TGGATTCTTGGCTTACTTCA+TGG - chr1_2:65431053-65431072 Msa0085360:intron 40.0%
TTACGAGAAACAGATTGCGA+CGG + chr1_2:65431247-65431266 None:intergenic 40.0%
TAGAGAAGGCTGATTGTAAG+GGG + chr1_2:65431287-65431306 None:intergenic 40.0%
CTTAGAGAAGGCTGATTGTA+AGG + chr1_2:65431289-65431308 None:intergenic 40.0%
CTTACAATCAGCCTTCTCTA+AGG - chr1_2:65431287-65431306 Msa0085360:intron 40.0%
GTGTGAAGCTAGAGATCTTT+GGG + chr1_2:65431374-65431393 None:intergenic 40.0%
TGTGTGAAGCTAGAGATCTT+TGG + chr1_2:65431375-65431394 None:intergenic 40.0%
! TTGAGGCTGACTCACTATAT+CGG + chr1_2:65431531-65431550 None:intergenic 40.0%
GAACAATTCAACATTCCGGA+AGG + chr1_2:65431582-65431601 None:intergenic 40.0%
CGCTCATTAGTTCAATGACT+CGG + chr1_2:65431657-65431676 None:intergenic 40.0%
CGAGTCATTGAACTAATGAG+CGG - chr1_2:65431655-65431674 Msa0085360:intron 40.0%
ATAGACTGACGGTCATCATT+TGG + chr1_2:65431681-65431700 None:intergenic 40.0%
GCTGCTAACAAGAGAAATGT+TGG - chr1_2:65431940-65431959 Msa0085360:exon 40.0%
GTTGAGTTTGTGTGCTATGG+CGG - chr1_2:65428177-65428196 Msa0085360:three_prime_UTR 45.0%
! GCTGCTAAGGTTGTGTTGAT+TGG - chr1_2:65428199-65428218 Msa0085360:three_prime_UTR 45.0%
!!! TGGTAGTGTTTTTGGCACAC+TGG - chr1_2:65428375-65428394 Msa0085360:three_prime_UTR 45.0%
TTCCTTTGTGATGGTTGTGG+TGG - chr1_2:65428737-65428756 Msa0085360:CDS 45.0%
ATTTCAGCTCCATCGGTCAA+AGG - chr1_2:65429015-65429034 Msa0085360:CDS 45.0%
AAGAGGCTCTGCCAAGAATA+AGG + chr1_2:65429058-65429077 None:intergenic 45.0%
GTTAGGATTGCACAAAGTGC+TGG - chr1_2:65429177-65429196 Msa0085360:intron 45.0%
GAGTTGTCTGGTACACTAAC+TGG - chr1_2:65429356-65429375 Msa0085360:intron 45.0%
TCTGGTACACTAACTGGTTG+TGG - chr1_2:65429362-65429381 Msa0085360:intron 45.0%
!! CAGGGTTCTAGCTTAGTATG+TGG - chr1_2:65429598-65429617 Msa0085360:intron 45.0%
CACTGCAGACATAGCTAACA+GGG + chr1_2:65430010-65430029 None:intergenic 45.0%
TGCCTTGAAGATTATTGCGC+TGG - chr1_2:65430201-65430220 Msa0085360:CDS 45.0%
CTCCAGCGCAATAATCTTCA+AGG + chr1_2:65430206-65430225 None:intergenic 45.0%
GAAGACTTACTGTGACAGCA+GGG + chr1_2:65430246-65430265 None:intergenic 45.0%
GAATGTCTTTGTCATGAGGC+AGG - chr1_2:65430460-65430479 Msa0085360:intron 45.0%
CTTTGTCATGAGGCAGGTTA+TGG - chr1_2:65430466-65430485 Msa0085360:intron 45.0%
!! CAGGTTATGGCTATTTTCCC+AGG - chr1_2:65430479-65430498 Msa0085360:intron 45.0%
!! GGCTATTTTCCCAGGATTTC+CGG - chr1_2:65430487-65430506 Msa0085360:intron 45.0%
AGGAAGGCCTCATTTCATCA+GGG + chr1_2:65430834-65430853 None:intergenic 45.0%
TAGGAAGGCCTCATTTCATC+AGG + chr1_2:65430835-65430854 None:intergenic 45.0%
AACTCTGTCAATAAGTCGCC+AGG + chr1_2:65431019-65431038 None:intergenic 45.0%
AGTAAGCCAAGAATCCACAC+AGG + chr1_2:65431050-65431069 None:intergenic 45.0%
TTGCATCACGCTTGCAAACT+GGG + chr1_2:65431090-65431109 None:intergenic 45.0%
TTGCAAGCGTGATGCAAGAA+CGG - chr1_2:65431093-65431112 Msa0085360:intron 45.0%
CCTCATAGAAGACACGAAAG+AGG + chr1_2:65431185-65431204 None:intergenic 45.0%
CCTCTTTCGTGTCTTCTATG+AGG - chr1_2:65431182-65431201 Msa0085360:intron 45.0%
!! AAGGGGTACTTGCTAAAGAG+TGG + chr1_2:65431270-65431289 None:intergenic 45.0%
TCCTAAGATCCACAGAGCTA+CGG + chr1_2:65431345-65431364 None:intergenic 45.0%
ATGAATTCACCGCGTTCCAT+CGG - chr1_2:65431394-65431413 Msa0085360:intron 45.0%
CTTGGACTTGGAATGTGTGA+AGG + chr1_2:65431457-65431476 None:intergenic 45.0%
!! ACTGAAGCATTGCTTGGACT+TGG + chr1_2:65431469-65431488 None:intergenic 45.0%
! TTCAATGACTCGGCAATCAC+GGG + chr1_2:65431647-65431666 None:intergenic 45.0%
! GTTCAATGACTCGGCAATCA+CGG + chr1_2:65431648-65431667 None:intergenic 45.0%
TGGGTATGGACATAGACTGA+CGG + chr1_2:65431692-65431711 None:intergenic 45.0%
GGAGACACAAAACAGAAGGA+GGG + chr1_2:65431723-65431742 None:intergenic 45.0%
AGGAGACACAAAACAGAAGG+AGG + chr1_2:65431724-65431743 None:intergenic 45.0%
CAGAGGAGACACAAAACAGA+AGG + chr1_2:65431727-65431746 None:intergenic 45.0%
! CTTCTGTTTTGTGTCTCCTC+TGG - chr1_2:65431725-65431744 Msa0085360:intron 45.0%
ACAAGGAAGTCATTTGCCAG+AGG + chr1_2:65431744-65431763 None:intergenic 45.0%
CTGGCAAATGACTTCCTTGT+TGG - chr1_2:65431744-65431763 Msa0085360:intron 45.0%
ATGACTTCCTTGTTGGCATC+TGG - chr1_2:65431751-65431770 Msa0085360:intron 45.0%
ATGTACACCAGATGCCAACA+AGG + chr1_2:65431761-65431780 None:intergenic 45.0%
CAAAGCGTAAAACACACTGG+TGG + chr1_2:65431872-65431891 None:intergenic 45.0%
CATTAGCCAATGCAGCTCTA+TGG + chr1_2:65432199-65432218 None:intergenic 45.0%
!! AATTATTTAAAAAAAATTCA+TGG + chr1_2:65430547-65430566 None:intergenic 5.0%
CAGTTGAGGCATGCAAAGCA+TGG - chr1_2:65428480-65428499 Msa0085360:exon 50.0%
TTTATCCCGGTAAGTGGGGT+CGG + chr1_2:65428561-65428580 None:intergenic 50.0%
ATGTAGCCGACCCTACTTAC+CGG - chr1_2:65428631-65428650 Msa0085360:CDS 50.0%
CTTATCCCGGTAAGTAGGGT+CGG + chr1_2:65428640-65428659 None:intergenic 50.0%
TCTCCAGAACCTTTGACCGA+TGG + chr1_2:65429027-65429046 None:intergenic 50.0%
!! GGGGTGTAGCTTTGAGGAAA+AGG - chr1_2:65429155-65429174 Msa0085360:intron 50.0%
! CAATGAAGATGGTGGCATCC+TGG - chr1_2:65429224-65429243 Msa0085360:intron 50.0%
TCAGTGGCAGGAAATTCTGC+TGG - chr1_2:65429844-65429863 Msa0085360:CDS 50.0%
GCACTGCAGACATAGCTAAC+AGG + chr1_2:65430011-65430030 None:intergenic 50.0%
GTTAGCTATGTCTGCAGTGC+TGG - chr1_2:65430011-65430030 Msa0085360:CDS 50.0%
GGCATCGCATACGAAGAGAA+AGG - chr1_2:65430055-65430074 Msa0085360:CDS 50.0%
ATTGCGCTGGAGAGAAACTC+AGG - chr1_2:65430214-65430233 Msa0085360:CDS 50.0%
GGAAGACTTACTGTGACAGC+AGG + chr1_2:65430247-65430266 None:intergenic 50.0%
GATTTCCGGCCATGTCTCTT+TGG - chr1_2:65430501-65430520 Msa0085360:intron 50.0%
AGAGTTTCATGCTGCCTGTG+TGG - chr1_2:65431033-65431052 Msa0085360:CDS 50.0%
ATGCTGCCTGTGTGGATTCT+TGG - chr1_2:65431041-65431060 Msa0085360:intron 50.0%
ACGCTTGCAAACTGGGCAAA+AGG + chr1_2:65431083-65431102 None:intergenic 50.0%
CTTGCATCACGCTTGCAAAC+TGG + chr1_2:65431091-65431110 None:intergenic 50.0%
TGCAAGCGTGATGCAAGAAC+GGG - chr1_2:65431094-65431113 Msa0085360:intron 50.0%
! AGAGGTGTGGATTCTGAAGG+TGG + chr1_2:65431133-65431152 None:intergenic 50.0%
! AGCAGAGGTGTGGATTCTGA+AGG + chr1_2:65431136-65431155 None:intergenic 50.0%
AAAGAGGATGCCGCAGATGA+CGG + chr1_2:65431169-65431188 None:intergenic 50.0%
TGACGGTAGGACCTTAGAGA+AGG + chr1_2:65431301-65431320 None:intergenic 50.0%
AGAGCTACGGCTGAAGCTTA+GGG + chr1_2:65431332-65431351 None:intergenic 50.0%
GATGGATAACCGATGGAACG+CGG + chr1_2:65431406-65431425 None:intergenic 50.0%
! GCTGACTCACTATATCGGAG+TGG + chr1_2:65431526-65431545 None:intergenic 50.0%
CGCAAATGGTGAGAAGCTTG+AGG + chr1_2:65431548-65431567 None:intergenic 50.0%
TCAACATTCCGGAAGGGAGT+TGG + chr1_2:65431575-65431594 None:intergenic 50.0%
CAGAAGGAGGGAATGTCGAT+GGG + chr1_2:65431711-65431730 None:intergenic 50.0%
ACAGAAGGAGGGAATGTCGA+TGG + chr1_2:65431712-65431731 None:intergenic 50.0%
ATGTAGCCGACCCCACTTAC+CGG - chr1_2:65428552-65428571 Msa0085360:CDS 55.0%
GGTAAGTAGGGTCGGCTACA+TGG + chr1_2:65428632-65428651 None:intergenic 55.0%
TGTAGCCGACCCTACTTACC+GGG - chr1_2:65428632-65428651 Msa0085360:CDS 55.0%
CGCCACCACAACCATCACAA+AGG + chr1_2:65428742-65428761 None:intergenic 55.0%
GCTCCATCGGTCAAAGGTTC+TGG - chr1_2:65429021-65429040 Msa0085360:CDS 55.0%
! TAGAGGGGGGTGTAGCTTTG+AGG - chr1_2:65429149-65429168 Msa0085360:intron 55.0%
CCTGCGGACGAAGAAACAAG+TGG + chr1_2:65430037-65430056 None:intergenic 55.0%
! CCACTTGTTTCTTCGTCCGC+AGG - chr1_2:65430034-65430053 Msa0085360:CDS 55.0%
CTCTTCGTATGCGATGCCTG+CGG + chr1_2:65430053-65430072 None:intergenic 55.0%
GAGACATGGCCGGAAATCCT+GGG + chr1_2:65430499-65430518 None:intergenic 55.0%
AGAGACATGGCCGGAAATCC+TGG + chr1_2:65430500-65430519 None:intergenic 55.0%
! GGTGTGGATTCTGAAGGTGG+TGG + chr1_2:65431130-65431149 None:intergenic 55.0%
!! GGTTGATGACAGCAGAGGTG+TGG + chr1_2:65431146-65431165 None:intergenic 55.0%
GTCATCAACCCCGTCATCTG+CGG - chr1_2:65431156-65431175 Msa0085360:intron 55.0%
AAGAGGATGCCGCAGATGAC+GGG + chr1_2:65431168-65431187 None:intergenic 55.0%
AGCTTAGGGAGGGGGATTGA+CGG + chr1_2:65431318-65431337 None:intergenic 55.0%
TACGGCTGAAGCTTAGGGAG+GGG + chr1_2:65431327-65431346 None:intergenic 55.0%
CTACGGCTGAAGCTTAGGGA+GGG + chr1_2:65431328-65431347 None:intergenic 55.0%
CAGAGCTACGGCTGAAGCTT+AGG + chr1_2:65431333-65431352 None:intergenic 55.0%
! AAGCTTCAGCCGTAGCTCTG+TGG - chr1_2:65431333-65431352 Msa0085360:intron 55.0%
! GCCGTAGCTCTGTGGATCTT+AGG - chr1_2:65431341-65431360 Msa0085360:intron 55.0%
GCTGATGACTGGATGAACCG+AGG + chr1_2:65431498-65431517 None:intergenic 55.0%
GAGTGGATGCTGCTGATGAC+TGG + chr1_2:65431509-65431528 None:intergenic 55.0%
AGGGAGTTGGCAGACGCAAA+TGG + chr1_2:65431562-65431581 None:intergenic 55.0%
GGAGGGAATGTCGATGGGTA+TGG + chr1_2:65431706-65431725 None:intergenic 55.0%
GTGTGCTATGGCGGCTGCTA+AGG - chr1_2:65428186-65428205 Msa0085360:three_prime_UTR 60.0%
GGTAAGTGGGGTCGGCTACA+TGG + chr1_2:65428553-65428572 None:intergenic 60.0%
TGTAGCCGACCCCACTTACC+GGG - chr1_2:65428553-65428572 Msa0085360:CDS 60.0%
GCGTGATGCAAGAACGGGTC+TGG - chr1_2:65431099-65431118 Msa0085360:intron 60.0%
!! GACGGGGTTGATGACAGCAG+AGG + chr1_2:65431151-65431170 None:intergenic 60.0%
AGAGGATGCCGCAGATGACG+GGG + chr1_2:65431167-65431186 None:intergenic 60.0%
TAGGGAGGGGGATTGACGGT+AGG + chr1_2:65431314-65431333 None:intergenic 60.0%
ACGGCTGAAGCTTAGGGAGG+GGG + chr1_2:65431326-65431345 None:intergenic 60.0%
GCTACGGCTGAAGCTTAGGG+AGG + chr1_2:65431329-65431348 None:intergenic 60.0%
TGCGTCTGCCAACTCCCTTC+CGG - chr1_2:65431564-65431583 Msa0085360:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65427849 65432232 65427849 ID=Msa0085360;Name=Msa0085360
chr1_2 mRNA 65427849 65432232 65427849 ID=Msa0085360-mRNA-1;Parent=Msa0085360;Name=Msa0085360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=290|1|1|1|1|1|4|638|441
chr1_2 exon 65427849 65429046 65427849 ID=Msa0085360-mRNA-1:exon:22082;Parent=Msa0085360-mRNA-1
chr1_2 exon 65429826 65430233 65429826 ID=Msa0085360-mRNA-1:exon:22081;Parent=Msa0085360-mRNA-1
chr1_2 exon 65430829 65431059 65430829 ID=Msa0085360-mRNA-1:exon:22080;Parent=Msa0085360-mRNA-1
chr1_2 exon 65431816 65432232 65431816 ID=Msa0085360-mRNA-1:exon:22079;Parent=Msa0085360-mRNA-1
chr1_2 five_prime_UTR 65431943 65432232 65431943 ID=Msa0085360-mRNA-1:five_prime_utr;Parent=Msa0085360-mRNA-1
chr1_2 CDS 65431816 65431942 65431816 ID=Msa0085360-mRNA-1:cds;Parent=Msa0085360-mRNA-1
chr1_2 CDS 65430829 65431059 65430829 ID=Msa0085360-mRNA-1:cds;Parent=Msa0085360-mRNA-1
chr1_2 CDS 65429826 65430233 65429826 ID=Msa0085360-mRNA-1:cds;Parent=Msa0085360-mRNA-1
chr1_2 CDS 65428487 65429046 65428487 ID=Msa0085360-mRNA-1:cds;Parent=Msa0085360-mRNA-1
chr1_2 three_prime_UTR 65427849 65428486 65427849 ID=Msa0085360-mRNA-1:three_prime_utr;Parent=Msa0085360-mRNA-1
Gene Sequence

>Msa0085360

ATGGGTTCCTCGAATCTTTGCTTCTTTTTCTTCTCTTTGTTGAGTTTGTGTGCTATGGCGGCTGCTAAGGTTGTGTTGATTGGGAACAACATCACTCTCTCGTTTGATGATATTGAAGCTAATTTCGCTCCATCGGTCAAAGGTTCTGGAGAATACGGAGCCTTATTCTTGGCAGAGCCTCTTGATGCATGTACAGAACTTACGAATAAAGCTAGAACACTTTCGAATGCTAGTTCACCTTTTGTTTTGATGGTTAGAGGGGGGTGTAGCTTTGAGGAAAAGGTTAGGATTGCACAAAGTGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATACATGCGGTATTTGTTTCAAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGTTTAACTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCGTTCATTTCCCTGTTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATACGAAGAGAAAGGCCTCAAACTTCTTCTCATGTTCGTGAATTTCATGGCATGAGTAGTCGCTTAGTGAAAGCAATGCCAAGTTTGATTTTTACTTCTGCTTTGGAAGATAACTGTACATCAAGAACATGTGCCATCTGCCTTGAAGATTATTGCGCTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACGGGTCTGGCTGATCCACCACCTTCAGAATCCACACCTCTGCTGTCATCAACCCCGTCATCTGCGGCATCCTCTTTCGTGTCTTCTATGAGGTCATCATTTGCTTCATCTTCAGCAATACAAATTGGTTCACCGTCGCAATCTGTTTCTCGTAACCACTCTTTAGCAAGTACCCCTTACAATCAGCCTTCTCTAAGGTCCTACCGTCAATCCCCCTCCCTAAGCTTCAGCCGTAGCTCTGTGGATCTTAGGAACGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATCGGTTATCCATCTTTATCATCTCTTAACTCAAGATACTTGCCTTCACACATTCCAAGTCCAAGCAATGCTTCAGTAAGTTTCCTCGGTTCATCCAGTCATCAGCAGCATCCACTCCGATATAGTGAGTCAGCCTCAAGCTTCTCACCATTTGCGTCTGCCAACTCCCTTCCGGAATGTTGA

Protein sequence

>Msa0085360

MGSSNLCFFFFSLLSLCAMAAAKVVLIGNNITLSFDDIEANFAPSVKGSGEYGALFLAEPLDACTELTNKARTLSNASSPFVLMVRGGCSFEEKVRIAQSAGYKAAIVYDNEDGGILVAMAGNSAGIRIHAVFVSKASGEILKKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQTSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCAGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSTPSSAASSFVSSMRSSFASSSAIQIGSPSQSVSRNHSLASTPYNQPSLRSYRQSPSLSFSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYLPSHIPSPSNASVSFLGSSSHQQHPLRYSESASSFSPFASANSLPEC*