Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013290 | KEH40762.1 | 70.690 | 58 | 12 | 1 | 120 | 177 | 7 | 59 | 3.02e-15 | 77.8 |
| Msa0013290 | KEH40762.1 | 84.615 | 65 | 7 | 1 | 1 | 62 | 1 | 65 | 6.70e-26 | 105 |
| Msa0013290 | KEH40762.1 | 88.136 | 59 | 7 | 0 | 62 | 120 | 7 | 65 | 1.14e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013290 | Msa0032580 | 0.818149 | 2.278466e-52 | -8.615850e-47 |
| Msa0013290 | Msa0094920 | 0.807047 | 6.116323e-50 | -8.615850e-47 |
| Msa0013290 | Msa0106520 | 0.927698 | 8.175883e-92 | -8.615850e-47 |
| Msa0013290 | Msa0172780 | 0.817103 | 3.922439e-52 | -8.615850e-47 |
| Msa0013290 | Msa0172970 | 0.820655 | 6.115188e-53 | -8.615850e-47 |
| Msa0013290 | Msa0260210 | 0.805640 | 1.210511e-49 | -8.615850e-47 |
| Msa0013290 | Msa0304290 | 0.805663 | 1.197237e-49 | -8.615850e-47 |
| Msa0013290 | Msa0304330 | 0.806050 | 9.929944e-50 | -8.615850e-47 |
| Msa0013290 | Msa0429290 | 0.808238 | 3.415893e-50 | -8.615850e-47 |
| Msa0013290 | Msa0475580 | 0.800170 | 1.634464e-48 | -8.615850e-47 |
| Msa0013290 | Msa0519220 | 0.800205 | 1.607523e-48 | -8.615850e-47 |
| Msa0013290 | Msa0784860 | 0.810297 | 1.236390e-50 | -8.615850e-47 |
| Msa0013290 | Msa0813720 | 0.806397 | 8.392253e-50 | -8.615850e-47 |
| Msa0013290 | Msa0996170 | 0.808492 | 3.015534e-50 | -8.615850e-47 |
| Msa0013290 | Msa1084470 | 0.819475 | 1.138911e-52 | -8.615850e-47 |
| Msa0013290 | Msa1224810 | 0.805327 | 1.408030e-49 | -8.615850e-47 |
| Msa0013290 | Msa1405810 | 0.924392 | 7.493980e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013290 | MtrunA17_Chr1g0162491 | 88.136 | 59 | 7 | 0 | 62 | 120 | 7 | 65 | 1.05e-30 | 107 |
| Msa0013290 | MtrunA17_Chr1g0162491 | 84.615 | 65 | 7 | 1 | 1 | 62 | 1 | 65 | 6.16e-30 | 105 |
| Msa0013290 | MtrunA17_Chr1g0162491 | 70.690 | 58 | 12 | 1 | 120 | 177 | 7 | 59 | 2.78e-19 | 77.8 |
| Msa0013290 | MtrunA17_Chr1g0162551 | 93.103 | 58 | 4 | 0 | 120 | 177 | 7 | 64 | 9.46e-30 | 104 |
| Msa0013290 | MtrunA17_Chr1g0162551 | 71.875 | 64 | 13 | 1 | 62 | 120 | 7 | 70 | 4.16e-24 | 90.1 |
| Msa0013290 | MtrunA17_Chr1g0162551 | 68.571 | 70 | 14 | 2 | 1 | 62 | 1 | 70 | 2.34e-23 | 88.2 |
| Msa0013290 | MtrunA17_Chr4g0034081 | 43.243 | 74 | 28 | 2 | 1 | 62 | 1 | 72 | 2.25e-12 | 59.7 |
| Msa0013290 | MtrunA17_Chr4g0034081 | 44.615 | 65 | 29 | 1 | 63 | 120 | 8 | 72 | 7.18e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 790 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGGATTTGGAAAATT+TGG | 0.091946 | 1_1:+20580645 | None:intergenic |
| CTCTTCTTCTAAACCATCTT+TGG | 0.174831 | 1_1:+20584300 | None:intergenic |
| CTCTTCTTCTAAACCATCTT+TGG | 0.198131 | 1_1:+20580630 | None:intergenic |
| TTCTAAACCATCTTTGGATT+TGG | 0.216462 | 1_1:+20580636 | None:intergenic |
| TAAACCATCTTTGGCTTTCT+TGG | 0.219185 | 1_1:+20584309 | None:intergenic |
| CACTTCTTCTAAACCATCTT+TGG | 0.223757 | 1_1:+20592927 | None:intergenic |
| GTCAACAATATGTTTGCTTA+TGG | 0.264859 | 1_1:-20584209 | Msa0013290:CDS |
| GTCAACAATATGTTTGCTTA+TGG | 0.264859 | 1_1:-20592845 | Msa0013290:CDS |
| TTAGAAGAAGAGAAGGAAGT+TGG | 0.379164 | 1_1:-20580619 | Msa0013290:CDS |
| CTAGTGAGCAAGTCTATTAG+TGG | 0.429043 | 1_1:+20580118 | None:intergenic |
| TAGAACTTTCTCTTTGAGCT+TGG | 0.434544 | 1_1:+20580678 | None:intergenic |
| AGTTGGAAGGGAAGCTCAAA+AGG | 0.457096 | 1_1:-20580602 | Msa0013290:CDS |
| ACATATTGTTGACTCTGAAA+TGG | 0.461435 | 1_1:+20592855 | None:intergenic |
| AGAAGAGAAGGAAGTTGGAA+GGG | 0.471300 | 1_1:-20580614 | Msa0013290:CDS |
| CACTAATAGACTTGCTCACT+AGG | 0.485884 | 1_1:-20580117 | None:intergenic |
| CTGACCAAGAAAGCCAAAGA+TGG | 0.486491 | 1_1:-20584313 | Msa0013290:CDS |
| GCCATGGTAGAGGTATGGAT+TGG | 0.490617 | 1_1:-20584364 | Msa0013290:intron |
| AAGAAGAGAAGGAAGTTGGA+AGG | 0.492250 | 1_1:-20580615 | Msa0013290:CDS |
| CAAAGATGGTTTAGAAGAAG+TGG | 0.494909 | 1_1:-20592926 | Msa0013290:CDS |
| AGTGGGAATTCAATCTCAAA+AGG | 0.495263 | 1_1:-20584272 | Msa0013290:CDS |
| AGTGGGAATTCAATCTCAAA+AGG | 0.495263 | 1_1:-20592908 | Msa0013290:CDS |
| AGATGGTTTAGAAGAAGAGA+AGG | 0.510389 | 1_1:-20580626 | Msa0013290:CDS |
| CCATGGTAGAGGTATGGATT+GGG | 0.519758 | 1_1:-20584363 | Msa0013290:intron |
| GAGGTATGGATTGGGAAACT+AGG | 0.523506 | 1_1:-20584355 | Msa0013290:CDS |
| TGTCAGCCATGGTAGAGGTA+TGG | 0.524699 | 1_1:-20592996 | Msa0013290:CDS |
| ACATATTGTTGACTCAGATA+AGG | 0.525899 | 1_1:+20580549 | None:intergenic |
| TTAGAAGAAGAGAAAGAAGT+GGG | 0.540518 | 1_1:-20584289 | Msa0013290:CDS |
| TTTAGAAGAAGAGAAAGAAG+TGG | 0.560212 | 1_1:-20584290 | Msa0013290:CDS |
| GCCATGGTAGAGGTATGGAT+TGG | 0.598727 | 1_1:-20592991 | Msa0013290:CDS |
| GCCATGGTAGAGGTATGGAT+TGG | 0.607798 | 1_1:-20580709 | Msa0013290:intron |
| AAAGATGGTTTAGAAGAAGT+GGG | 0.626250 | 1_1:-20592925 | Msa0013290:CDS |
| ACTAATAGACTTGCTCACTA+GGG | 0.628194 | 1_1:-20580116 | None:intergenic |
| ACCAATCCATACCTCTACCA+TGG | 0.653436 | 1_1:+20592990 | None:intergenic |
| TGGAAGGGAAGCTCAAAAGG+AGG | 0.704527 | 1_1:-20580599 | Msa0013290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTAATATTTTTT+TGG | + | chr1_1:20580999-20581018 | None:intergenic | 0.0% |
| !!! | TATTTTTTTTTTTAAAAAAT+CGG | + | chr1_1:20583407-20583426 | None:intergenic | 0.0% |
| !! | TTATAATATTTATTCTCATA+TGG | + | chr1_1:20582008-20582027 | None:intergenic | 10.0% |
| !! | TAAAAATAAATATTTCACAT+CGG | + | chr1_1:20584091-20584110 | None:intergenic | 10.0% |
| !! | CTATTTATATTTATATACTA+CGG | + | chr1_1:20584161-20584180 | None:intergenic | 10.0% |
| !!! | TGTTTTCTAAATTTTTTTTA+TGG | + | chr1_1:20584515-20584534 | None:intergenic | 10.0% |
| !! | AAAAAAAAATTTCTTCTAAA+AGG | - | chr1_1:20586276-20586295 | Msa0013290:intron | 10.0% |
| !! | CAAATAAAAAAAACTTAAAT+AGG | + | chr1_1:20586982-20587001 | None:intergenic | 10.0% |
| !!! | CTATTTAAGTTTTTTTTATT+TGG | - | chr1_1:20586980-20586999 | Msa0013290:intron | 10.0% |
| !!! | CAATAATAATATATTTTTTG+GGG | + | chr1_1:20587364-20587383 | None:intergenic | 10.0% |
| !!! | ATAATTTTTATTGTTGAAAA+TGG | + | chr1_1:20587564-20587583 | None:intergenic | 10.0% |
| !! | CATTATTAAACAAATAATTA+TGG | - | chr1_1:20587660-20587679 | Msa0013290:intron | 10.0% |
| !!! | CCATAAATTATAATTTTTTA+TGG | + | chr1_1:20587834-20587853 | None:intergenic | 10.0% |
| !! | CCATAAAAAATTATAATTTA+TGG | - | chr1_1:20587831-20587850 | Msa0013290:intron | 10.0% |
| !! | AAACAAACATATTAAATTTA+AGG | + | chr1_1:20587876-20587895 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATCTTTATAGT+TGG | - | chr1_1:20587896-20587915 | Msa0013290:intron | 10.0% |
| !! | AGTCTTAAAAAAAAAATATT+TGG | + | chr1_1:20588356-20588375 | None:intergenic | 10.0% |
| !! | TAATTAAACATATATTAACA+AGG | + | chr1_1:20588943-20588962 | None:intergenic | 10.0% |
| !! | TTATAAATTTATTTAACATG+AGG | + | chr1_1:20590817-20590836 | None:intergenic | 10.0% |
| !!! | ATTAGAATAAGTTTTTATTT+TGG | - | chr1_1:20591957-20591976 | Msa0013290:intron | 10.0% |
| !! | CTAATATATGCTTAATTATT+AGG | - | chr1_1:20580309-20580328 | Msa0013290:intron | 15.0% |
| !! | TGTTAATTAATTCAATGATT+TGG | - | chr1_1:20580345-20580364 | Msa0013290:intron | 15.0% |
| !!! | TATTATAAATTTTCTTGTCT+AGG | + | chr1_1:20580373-20580392 | None:intergenic | 15.0% |
| !! | ATTACAATTATTAAAGCAAT+AGG | - | chr1_1:20580542-20580561 | Msa0013290:intron | 15.0% |
| !!! | ATATTGTTTAAACTTTTACA+CGG | - | chr1_1:20581289-20581308 | Msa0013290:intron | 15.0% |
| !!! | CTTTGTATAGATTTATTTTT+TGG | - | chr1_1:20583235-20583254 | Msa0013290:intron | 15.0% |
| !! | TATATGTAATCTTAATTAGT+TGG | - | chr1_1:20583712-20583731 | Msa0013290:intron | 15.0% |
| !!! | ATTATTGTGAATTTTACATA+GGG | + | chr1_1:20585478-20585497 | None:intergenic | 15.0% |
| !!! | AATTATTGTGAATTTTACAT+AGG | + | chr1_1:20585479-20585498 | None:intergenic | 15.0% |
| !!! | TCATTGTAAAGTATTTAAAA+TGG | + | chr1_1:20586086-20586105 | None:intergenic | 15.0% |
| !! | CAATAAAAAACAATTATGTT+AGG | - | chr1_1:20586106-20586125 | Msa0013290:intron | 15.0% |
| !!! | GAAGAAATTTTTTTTTCTTT+TGG | + | chr1_1:20586272-20586291 | None:intergenic | 15.0% |
| !! | AAGACAAAAATTATATACAA+CGG | + | chr1_1:20586506-20586525 | None:intergenic | 15.0% |
| !! | CAATTATTATTTATTGTCAT+GGG | + | chr1_1:20586926-20586945 | None:intergenic | 15.0% |
| !! | ACAATTATTATTTATTGTCA+TGG | + | chr1_1:20586927-20586946 | None:intergenic | 15.0% |
| !!! | GTAAATTCTATGTTATTTTT+CGG | - | chr1_1:20586945-20586964 | Msa0013290:intron | 15.0% |
| !!! | TAAGTTTTTTTTATTTGGTT+TGG | - | chr1_1:20586985-20587004 | Msa0013290:intron | 15.0% |
| !!! | TGAAAATTTTGTAATCTTAT+CGG | + | chr1_1:20587277-20587296 | None:intergenic | 15.0% |
| !! | TATATTATTATTGAATTGGT+CGG | - | chr1_1:20587371-20587390 | Msa0013290:intron | 15.0% |
| !!! | ATTGATAGATTTATTTCTAT+TGG | - | chr1_1:20587502-20587521 | Msa0013290:intron | 15.0% |
| !! | AAATAATTATGGATGAAATT+GGG | - | chr1_1:20587671-20587690 | Msa0013290:intron | 15.0% |
| !! | TAATCTCTAACAAAAAATTA+AGG | + | chr1_1:20587733-20587752 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTAAGACTCTA+TGG | - | chr1_1:20588359-20588378 | Msa0013290:intron | 15.0% |
| !!! | ATTTTGTTAATTCAATGATT+TGG | - | chr1_1:20588977-20588996 | Msa0013290:intron | 15.0% |
| !! | GTTATTAGTGTTAATAATAT+TGG | - | chr1_1:20589117-20589136 | Msa0013290:intron | 15.0% |
| !! | TACAAATAATTTCAACTTAA+TGG | + | chr1_1:20589299-20589318 | None:intergenic | 15.0% |
| !! | TAGAGTTTAATATTTAACAT+TGG | + | chr1_1:20589541-20589560 | None:intergenic | 15.0% |
| !! | AGAAATAATATAAAGATAAG+TGG | - | chr1_1:20589583-20589602 | Msa0013290:intron | 15.0% |
| !!! | AACTCTAAATTTTTAATAGA+AGG | - | chr1_1:20589895-20589914 | Msa0013290:intron | 15.0% |
| !!! | TTTTAATAGAAGGTATATAA+TGG | - | chr1_1:20589905-20589924 | Msa0013290:intron | 15.0% |
| !! | TTATATATTACTCATCAAAA+AGG | - | chr1_1:20590125-20590144 | Msa0013290:intron | 15.0% |
| !!! | AAAATGAGCAATTTAATTTT+TGG | - | chr1_1:20590984-20591003 | Msa0013290:intron | 15.0% |
| !!! | AAATGAGCAATTTAATTTTT+GGG | - | chr1_1:20590985-20591004 | Msa0013290:intron | 15.0% |
| !!! | TCTTTGTAATTTCTATTTTT+GGG | + | chr1_1:20591653-20591672 | None:intergenic | 15.0% |
| !! | CAAAACTAATTCAATTAAAA+AGG | + | chr1_1:20591703-20591722 | None:intergenic | 15.0% |
| !!! | AAAAAAATCAGCAATAATTT+TGG | - | chr1_1:20592006-20592025 | Msa0013290:intron | 15.0% |
| !!! | TTTCTATTCTTTTTTTCTAT+TGG | + | chr1_1:20592102-20592121 | None:intergenic | 15.0% |
| !!! | TATTCTTTGCAATATTTTAT+TGG | + | chr1_1:20592130-20592149 | None:intergenic | 15.0% |
| !! | AATCTCAACAAAAAAAAAAA+AGG | - | chr1_1:20592328-20592347 | Msa0013290:intron | 15.0% |
| !! | ATTCAAATATATATGTCATT+TGG | - | chr1_1:20592631-20592650 | Msa0013290:intron | 15.0% |
| !! | TAATTAAGCATATATTAGCA+AGG | + | chr1_1:20580307-20580326 | None:intergenic | 20.0% |
| !! | TGCTAGATATGTATAAAAAT+TGG | - | chr1_1:20580511-20580530 | Msa0013290:intron | 20.0% |
| !!! | TTACTTCACAAATCTTTTTT+GGG | + | chr1_1:20580623-20580642 | None:intergenic | 20.0% |
| !!! | ATTACTTCACAAATCTTTTT+TGG | + | chr1_1:20580624-20580643 | None:intergenic | 20.0% |
| !! | AAAATTCATATGTTGAATCT+CGG | - | chr1_1:20580820-20580839 | Msa0013290:intron | 20.0% |
| !! | TAGATGTATATAAATGTGTT+TGG | - | chr1_1:20581313-20581332 | Msa0013290:intron | 20.0% |
| !! | CTTTACAAAATATAATGGTA+TGG | + | chr1_1:20581760-20581779 | None:intergenic | 20.0% |
| !! | GGATTCTTTACAAAATATAA+TGG | + | chr1_1:20581765-20581784 | None:intergenic | 20.0% |
| !! | ATTTGAATGTTGGAATAATT+AGG | - | chr1_1:20582876-20582895 | Msa0013290:intron | 20.0% |
| !! | AAAAAATTTAGAAAACAGTG+CGG | - | chr1_1:20584518-20584537 | Msa0013290:intron | 20.0% |
| !! | AATAAAGAAGATGATTACTA+TGG | - | chr1_1:20584726-20584745 | Msa0013290:intron | 20.0% |
| !! | ATTCAACCAAATAACAATAT+TGG | - | chr1_1:20585353-20585372 | Msa0013290:intron | 20.0% |
| !! | AAAATATACATTTCACAACA+GGG | + | chr1_1:20585558-20585577 | None:intergenic | 20.0% |
| !! | ATAATGTAAGTTGTCAATTT+AGG | - | chr1_1:20585600-20585619 | Msa0013290:intron | 20.0% |
| !! | ATAAATTAAGTCCAAAATTG+TGG | - | chr1_1:20585677-20585696 | Msa0013290:intron | 20.0% |
| !!! | TGTTTCATTGTTTTGTTTTA+TGG | - | chr1_1:20586451-20586470 | Msa0013290:intron | 20.0% |
| !!! | GTTTCATTGTTTTGTTTTAT+GGG | - | chr1_1:20586452-20586471 | Msa0013290:intron | 20.0% |
| !! | TTAGTATTTGAACACAATAT+AGG | - | chr1_1:20586727-20586746 | Msa0013290:intron | 20.0% |
| !! | AACTTCTTGTATAATATGAA+CGG | + | chr1_1:20586783-20586802 | None:intergenic | 20.0% |
| !! | AAATAATCAGTAATGACAAA+AGG | - | chr1_1:20587108-20587127 | Msa0013290:intron | 20.0% |
| !!! | GAAAATTTTGTAATCTTATC+GGG | + | chr1_1:20587276-20587295 | None:intergenic | 20.0% |
| !! | AGCTCAATATTTATTATTTG+TGG | + | chr1_1:20587417-20587436 | None:intergenic | 20.0% |
| !! | CAAATAATTATGGATGAAAT+TGG | - | chr1_1:20587670-20587689 | Msa0013290:intron | 20.0% |
| !! | TAAGGACTAAAATTAACATT+AGG | + | chr1_1:20587715-20587734 | None:intergenic | 20.0% |
| !!! | AGTAATGTTGTATTTAGTTT+TGG | + | chr1_1:20587982-20588001 | None:intergenic | 20.0% |
| !! | TTTACTTTATCTAACATATG+TGG | - | chr1_1:20588030-20588049 | Msa0013290:intron | 20.0% |
| !!! | TTTTTATTTATTCATTACGC+AGG | + | chr1_1:20588165-20588184 | None:intergenic | 20.0% |
| !! | GCGTAATGAATAAATAAAAA+TGG | - | chr1_1:20588165-20588184 | Msa0013290:intron | 20.0% |
| !! | AATAATGAGAATATTCACAT+GGG | + | chr1_1:20588573-20588592 | None:intergenic | 20.0% |
| !!! | TATTACAAATTTTCTTGTCT+GGG | + | chr1_1:20589005-20589024 | None:intergenic | 20.0% |
| !!! | TTATTACAAATTTTCTTGTC+TGG | + | chr1_1:20589006-20589025 | None:intergenic | 20.0% |
| !! | TATTTGTACAATATTCACAA+TGG | - | chr1_1:20589311-20589330 | Msa0013290:intron | 20.0% |
| !! | AAAATATTCAATCTCATATC+TGG | + | chr1_1:20589644-20589663 | None:intergenic | 20.0% |
| !! | ACAGTAAATTAGTAAATTGT+TGG | + | chr1_1:20589768-20589787 | None:intergenic | 20.0% |
| !! | ACAATTTACTAATTTACTGT+TGG | - | chr1_1:20589768-20589787 | Msa0013290:intron | 20.0% |
| !!! | ACAATTTTGTTTTGATCAAT+GGG | - | chr1_1:20590241-20590260 | Msa0013290:intron | 20.0% |
| !! | TTTATTAGATAGCTAAGTTT+GGG | + | chr1_1:20590391-20590410 | None:intergenic | 20.0% |
| !!! | TTGTATGACTTAATTGATTT+TGG | + | chr1_1:20590938-20590957 | None:intergenic | 20.0% |
| !!! | TGTTGCATAGTTTTATTTTA+TGG | - | chr1_1:20591212-20591231 | Msa0013290:intron | 20.0% |
| !!! | GTTGCATAGTTTTATTTTAT+GGG | - | chr1_1:20591213-20591232 | Msa0013290:intron | 20.0% |
| !! | AGATTAAACAAAACAATCTT+GGG | + | chr1_1:20591301-20591320 | None:intergenic | 20.0% |
| !!! | ATGAAACATTTTTAACCTTT+GGG | + | chr1_1:20591331-20591350 | None:intergenic | 20.0% |
| !! | GTTAAAAATGTTTCATCTTA+AGG | - | chr1_1:20591335-20591354 | Msa0013290:intron | 20.0% |
| !!! | TTTTTAAGGAGATAAACATA+GGG | + | chr1_1:20591618-20591637 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGGAGATAAACAT+AGG | + | chr1_1:20591619-20591638 | None:intergenic | 20.0% |
| !! | TATGTTTATCTCCTTAAAAA+AGG | - | chr1_1:20591618-20591637 | Msa0013290:intron | 20.0% |
| !!! | GTCTTTGTAATTTCTATTTT+TGG | + | chr1_1:20591654-20591673 | None:intergenic | 20.0% |
| !! | AATATGCAAAACTATGTAAA+AGG | - | chr1_1:20592066-20592085 | Msa0013290:intron | 20.0% |
| !!! | TATTCTTTTTTTCTATTGGT+CGG | + | chr1_1:20592098-20592117 | None:intergenic | 20.0% |
| !! | CACAAATTATTTCAACTAAA+TGG | + | chr1_1:20592767-20592786 | None:intergenic | 20.0% |
| !!! | TACTTCACAAATCTTTTTTG+GGG | + | chr1_1:20580622-20580641 | None:intergenic | 25.0% |
| ! | AAATTCATATGTTGAATCTC+GGG | - | chr1_1:20580821-20580840 | Msa0013290:intron | 25.0% |
| !!! | ATAGTTTTTTTGTCGTTTCA+AGG | + | chr1_1:20581149-20581168 | None:intergenic | 25.0% |
| !! | ACATAATTAGTTTGATACCA+AGG | - | chr1_1:20581207-20581226 | Msa0013290:intron | 25.0% |
| !! | TCATTCTTTGAGTATGTTTT+AGG | - | chr1_1:20581342-20581361 | Msa0013290:intron | 25.0% |
| !! | CATTCTTTGAGTATGTTTTA+GGG | - | chr1_1:20581343-20581362 | Msa0013290:intron | 25.0% |
| ! | TTGTATAGAAGTTTCACATT+AGG | - | chr1_1:20581413-20581432 | Msa0013290:intron | 25.0% |
| !!! | CTTCATGCATTATTTTTTTG+TGG | - | chr1_1:20581441-20581460 | Msa0013290:intron | 25.0% |
| ! | TAATACATGAAGAATGAGAA+TGG | + | chr1_1:20581786-20581805 | None:intergenic | 25.0% |
| !! | GAATTCTTTAAAAGATACAC+TGG | + | chr1_1:20581935-20581954 | None:intergenic | 25.0% |
| ! | AATTATGACTTTGAACTTAG+CGG | - | chr1_1:20582169-20582188 | Msa0013290:intron | 25.0% |
| ! | CATGAAATAGTTAATGTTGA+TGG | + | chr1_1:20582201-20582220 | None:intergenic | 25.0% |
| !! | TTTTTCTCTATCGAATGAAA+AGG | - | chr1_1:20582325-20582344 | Msa0013290:intron | 25.0% |
| ! | TGATCTAATACATAACTTGA+TGG | - | chr1_1:20582436-20582455 | Msa0013290:intron | 25.0% |
| !! | AATTTTCAACAACAAAGAGA+AGG | - | chr1_1:20582981-20583000 | Msa0013290:intron | 25.0% |
| ! | CTAGTACAGCAAAAAAAAAA+CGG | + | chr1_1:20583282-20583301 | None:intergenic | 25.0% |
| ! | AATACAACCCAGAATAAAAT+AGG | - | chr1_1:20583644-20583663 | Msa0013290:intron | 25.0% |
| ! | TTAGTTGGAAGTAAAAATAG+TGG | - | chr1_1:20583727-20583746 | Msa0013290:intron | 25.0% |
| !! | ACATAAATGAGTTTTCACAT+CGG | - | chr1_1:20583834-20583853 | Msa0013290:intron | 25.0% |
| ! | ATGTTCATAGTTGGATAAAA+GGG | + | chr1_1:20584001-20584020 | None:intergenic | 25.0% |
| ! | AGAATATGAGTGATATTTCT+AGG | + | chr1_1:20584226-20584245 | None:intergenic | 25.0% |
| ! | TTTCTGTCTATCAGATTTAT+AGG | + | chr1_1:20584421-20584440 | None:intergenic | 25.0% |
| ! | GATGCAAATTAAACAATACA+TGG | + | chr1_1:20584567-20584586 | None:intergenic | 25.0% |
| ! | TCAAGGCATAAAATCAAAAA+AGG | - | chr1_1:20584621-20584640 | Msa0013290:intron | 25.0% |
| ! | CAAGGCATAAAATCAAAAAA+GGG | - | chr1_1:20584622-20584641 | Msa0013290:intron | 25.0% |
| !! | AAAGGTTTTTGTGAGATAAA+TGG | - | chr1_1:20585243-20585262 | Msa0013290:intron | 25.0% |
| ! | GAAAATATACATTTCACAAC+AGG | + | chr1_1:20585559-20585578 | None:intergenic | 25.0% |
| ! | TAAAACCATACAGTTGTAAT+AGG | - | chr1_1:20585638-20585657 | Msa0013290:intron | 25.0% |
| ! | AAAACCATACAGTTGTAATA+GGG | - | chr1_1:20585639-20585658 | Msa0013290:intron | 25.0% |
| ! | TATGTGTACTAATTTGACAT+TGG | + | chr1_1:20585882-20585901 | None:intergenic | 25.0% |
| ! | TTTAGCACATATATATTGTG+TGG | - | chr1_1:20585979-20585998 | Msa0013290:intron | 25.0% |
| ! | GAAACATTTCGAAAATAGTT+AGG | + | chr1_1:20586061-20586080 | None:intergenic | 25.0% |
| !! | AAAAGGAGCAATTGAATTTT+TGG | - | chr1_1:20586293-20586312 | Msa0013290:intron | 25.0% |
| !! | AAAGGAGCAATTGAATTTTT+GGG | - | chr1_1:20586294-20586313 | Msa0013290:intron | 25.0% |
| ! | CAATAATAACAAAGGAAGAA+GGG | - | chr1_1:20586345-20586364 | Msa0013290:intron | 25.0% |
| !!! | ATTGTTTTGTTTTATGGGAT+GGG | - | chr1_1:20586457-20586476 | Msa0013290:intron | 25.0% |
| !!! | GTCTTTTTAATTTTAACCGT+TGG | - | chr1_1:20586521-20586540 | Msa0013290:intron | 25.0% |
| ! | TGTGACAAAATTATATCCAA+CGG | + | chr1_1:20586540-20586559 | None:intergenic | 25.0% |
| ! | AAATCACTTTCACAAACAAT+AGG | + | chr1_1:20586695-20586714 | None:intergenic | 25.0% |
| ! | TATAGGTTTAGTGATGTTAA+AGG | - | chr1_1:20586744-20586763 | Msa0013290:intron | 25.0% |
| ! | ACTTCTTGTATAATATGAAC+GGG | + | chr1_1:20586782-20586801 | None:intergenic | 25.0% |
| ! | ATTAAACCTATGTTACAATG+TGG | + | chr1_1:20586818-20586837 | None:intergenic | 25.0% |
| ! | CATAGGTTTAATGATGTTAA+AGG | - | chr1_1:20586826-20586845 | Msa0013290:intron | 25.0% |
| !! | TTTAATGATGTTAAAGGTGT+TGG | - | chr1_1:20586832-20586851 | Msa0013290:intron | 25.0% |
| !!! | TTAATGATGTTAAAGGTGTT+GGG | - | chr1_1:20586833-20586852 | Msa0013290:intron | 25.0% |
| ! | AAATCTTCTTGTAACATGAA+CGG | + | chr1_1:20586880-20586899 | None:intergenic | 25.0% |
| !!! | TTATTTGGTTTGGAAAAAAC+AGG | - | chr1_1:20586995-20587014 | Msa0013290:intron | 25.0% |
| ! | TATTTATTATTTGTGGTAGC+CGG | + | chr1_1:20587410-20587429 | None:intergenic | 25.0% |
| !!! | TTTCTATTGGTTTGATACTT+TGG | - | chr1_1:20587515-20587534 | Msa0013290:intron | 25.0% |
| !!! | TTAGTTTTGGTACTCATAAT+TGG | + | chr1_1:20587969-20587988 | None:intergenic | 25.0% |
| ! | AAGTAAAATCATCTTCTTTG+TGG | + | chr1_1:20588017-20588036 | None:intergenic | 25.0% |
| ! | AAAAAATATTTGGCAAACTG+TGG | + | chr1_1:20588346-20588365 | None:intergenic | 25.0% |
| ! | TATTCGTTCCAATGATTTAT+TGG | + | chr1_1:20588457-20588476 | None:intergenic | 25.0% |
| ! | GTGTATGCTTATTTGTAAAA+GGG | + | chr1_1:20588543-20588562 | None:intergenic | 25.0% |
| ! | AGTGTATGCTTATTTGTAAA+AGG | + | chr1_1:20588544-20588563 | None:intergenic | 25.0% |
| ! | GAATAATGAGAATATTCACA+TGG | + | chr1_1:20588574-20588593 | None:intergenic | 25.0% |
| ! | GTAGAAAGAAGAAAAAAAAG+TGG | - | chr1_1:20588660-20588679 | Msa0013290:intron | 25.0% |
| !!! | CACAACTACAATTTTTTTTG+GGG | + | chr1_1:20589080-20589099 | None:intergenic | 25.0% |
| !!! | CCACAACTACAATTTTTTTT+GGG | + | chr1_1:20589081-20589100 | None:intergenic | 25.0% |
| !!! | ACCACAACTACAATTTTTTT+TGG | + | chr1_1:20589082-20589101 | None:intergenic | 25.0% |
| !!! | TGGAGTAATTAGTTTTTTCA+TGG | - | chr1_1:20589137-20589156 | Msa0013290:intron | 25.0% |
| !!! | GGAGTAATTAGTTTTTTCAT+GGG | - | chr1_1:20589138-20589157 | Msa0013290:intron | 25.0% |
| ! | CTAGAATGTATAAAATTCGA+TGG | - | chr1_1:20589161-20589180 | Msa0013290:intron | 25.0% |
| !! | TTTTACGGTTCAACTAAATA+TGG | + | chr1_1:20589214-20589233 | None:intergenic | 25.0% |
| ! | ATATATATCTCAACTAAACG+AGG | + | chr1_1:20589239-20589258 | None:intergenic | 25.0% |
| ! | TTAGATACATAAACGTGATT+AGG | + | chr1_1:20589376-20589395 | None:intergenic | 25.0% |
| ! | ACTATCTCTAATAAAGAGTT+AGG | + | chr1_1:20589794-20589813 | None:intergenic | 25.0% |
| ! | GAAGTTAACAGTAAATTAGT+AGG | + | chr1_1:20589833-20589852 | None:intergenic | 25.0% |
| ! | GATATATAACTTTGACATTC+CGG | + | chr1_1:20589873-20589892 | None:intergenic | 25.0% |
| !!! | CAACACATTGTTTTTCTTTA+CGG | - | chr1_1:20589997-20590016 | Msa0013290:intron | 25.0% |
| !!! | AACACATTGTTTTTCTTTAC+GGG | - | chr1_1:20589998-20590017 | Msa0013290:intron | 25.0% |
| ! | CTTAAAAGAAAAGTCAATGA+AGG | + | chr1_1:20590221-20590240 | None:intergenic | 25.0% |
| !!! | GACAATTTTGTTTTGATCAA+TGG | - | chr1_1:20590240-20590259 | Msa0013290:intron | 25.0% |
| ! | TTATTAGATAGCTAAGTTTG+GGG | + | chr1_1:20590390-20590409 | None:intergenic | 25.0% |
| ! | GTTTATTAGATAGCTAAGTT+TGG | + | chr1_1:20590392-20590411 | None:intergenic | 25.0% |
| ! | AGACTATTCTTTACTTCATT+AGG | + | chr1_1:20590475-20590494 | None:intergenic | 25.0% |
| ! | AAGTAAAGAATAGTCTCATA+AGG | - | chr1_1:20590479-20590498 | Msa0013290:intron | 25.0% |
| ! | AAATAATATAGTTGTGACCA+AGG | - | chr1_1:20590564-20590583 | Msa0013290:intron | 25.0% |
| ! | CATTTGATAAAGTCTTAAGT+TGG | + | chr1_1:20590597-20590616 | None:intergenic | 25.0% |
| ! | CAACTTAAGACTTTATCAAA+TGG | - | chr1_1:20590595-20590614 | Msa0013290:intron | 25.0% |
| ! | TCTAATAGAATTTGGATTCA+TGG | + | chr1_1:20590668-20590687 | None:intergenic | 25.0% |
| ! | TATATCAAAGTCAATGTGAA+TGG | + | chr1_1:20590747-20590766 | None:intergenic | 25.0% |
| ! | AATTTATTTAACATGAGGAC+CGG | + | chr1_1:20590812-20590831 | None:intergenic | 25.0% |
| !!! | TAATTGATTTTGGTTCACAT+AGG | + | chr1_1:20590928-20590947 | None:intergenic | 25.0% |
| !!! | AAATTGCTCATTTTTCTAGA+GGG | + | chr1_1:20590978-20590997 | None:intergenic | 25.0% |
| !!! | TAAATTGCTCATTTTTCTAG+AGG | + | chr1_1:20590979-20590998 | None:intergenic | 25.0% |
| ! | GTAGTGTAAATTGTATTCTA+TGG | - | chr1_1:20591115-20591134 | Msa0013290:intron | 25.0% |
| !!! | GTTTTATTTTATGGGAGATA+CGG | - | chr1_1:20591221-20591240 | Msa0013290:intron | 25.0% |
| ! | GAGATTAAACAAAACAATCT+TGG | + | chr1_1:20591302-20591321 | None:intergenic | 25.0% |
| !! | GATGAAACATTTTTAACCTT+TGG | + | chr1_1:20591332-20591351 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTCTAAGATGATT+AGG | - | chr1_1:20591500-20591519 | Msa0013290:intron | 25.0% |
| ! | ATGATTAGGATAAGAGAAAA+TGG | - | chr1_1:20591514-20591533 | Msa0013290:intron | 25.0% |
| ! | TTATCTCCTTAAAAAAGGAA+AGG | - | chr1_1:20591623-20591642 | Msa0013290:intron | 25.0% |
| !! | CTCTATAGAATTTTCTTCAT+TGG | - | chr1_1:20591794-20591813 | Msa0013290:intron | 25.0% |
| ! | TGATTAAGTGAGAAAAATGT+CGG | - | chr1_1:20588729-20588748 | Msa0013290:intron | 25.0% |
| !!! | TTTGGAAAATTTGGTTTTGT+TGG | + | chr1_1:20592464-20592483 | None:intergenic | 25.0% |
| ! | ATCTTTGGATTTGGAAAATT+TGG | + | chr1_1:20592473-20592492 | None:intergenic | 25.0% |
| !! | AAATTTTCCAAATCCAAAGA+TGG | - | chr1_1:20592472-20592491 | Msa0013290:intron | 25.0% |
| ! | ATAAACAACATATGTTAGCA+AGG | + | chr1_1:20592613-20592632 | None:intergenic | 25.0% |
| !! | CATTACAAATTTTCTTATGC+AGG | + | chr1_1:20592659-20592678 | None:intergenic | 25.0% |
| ! | ATTAGTTGTTTAATTGCTCT+TGG | - | chr1_1:20592714-20592733 | Msa0013290:intron | 25.0% |
| !!! | TGAACGAACTTTTTTTTAGA+TGG | - | chr1_1:20592840-20592859 | Msa0013290:CDS | 25.0% |
| !!! | TTTTTTTTAGATGGTTTTGC+AGG | - | chr1_1:20592849-20592868 | Msa0013290:CDS | 25.0% |
| ! | GAAATAGGAGATATAAGAAA+AGG | + | chr1_1:20592957-20592976 | None:intergenic | 25.0% |
| !! | TAAACCATCTTTGGTCTTTT+TGG | + | chr1_1:20580182-20580201 | None:intergenic | 30.0% |
| AAAGATGGTTTAGAAGAAGT+GGG | - | chr1_1:20580190-20580209 | Msa0013290:intron | 30.0% | |
| !! | ACATATTGTTGACTCTGAAA+TGG | + | chr1_1:20580263-20580282 | None:intergenic | 30.0% |
| GTCAACAATATGTTTGCTTA+TGG | - | chr1_1:20580270-20580289 | Msa0013290:intron | 30.0% | |
| !!! | AAATCTTTTTTGGGGTTCAA+TGG | + | chr1_1:20580614-20580633 | None:intergenic | 30.0% |
| TAAAACAAGTTATTCTACCG+TGG | + | chr1_1:20580754-20580773 | None:intergenic | 30.0% | |
| ! | AAATAAGATGTGTCATTCTC+TGG | - | chr1_1:20580869-20580888 | Msa0013290:intron | 30.0% |
| !!! | TTTTTTGGTCTTAGATGAAG+TGG | + | chr1_1:20580984-20581003 | None:intergenic | 30.0% |
| CAATATCCAAGTTATTGGAT+GGG | + | chr1_1:20581116-20581135 | None:intergenic | 30.0% | |
| ACAATATCCAAGTTATTGGA+TGG | + | chr1_1:20581117-20581136 | None:intergenic | 30.0% | |
| CTCTACAATATCCAAGTTAT+TGG | + | chr1_1:20581121-20581140 | None:intergenic | 30.0% | |
| CAATAACTTGGATATTGTAG+AGG | - | chr1_1:20581119-20581138 | Msa0013290:intron | 30.0% | |
| TCAACCATATATTTCAAGCA+TGG | - | chr1_1:20581182-20581201 | Msa0013290:intron | 30.0% | |
| !!! | TGTTTTAGTGGTGTTTTTAG+TGG | + | chr1_1:20581733-20581752 | None:intergenic | 30.0% |
| ! | CTTTAAAAGATACACTGGTA+TGG | + | chr1_1:20581930-20581949 | None:intergenic | 30.0% |
| ATTATGACTTTGAACTTAGC+GGG | - | chr1_1:20582170-20582189 | Msa0013290:intron | 30.0% | |
| ACTATTTCATGTTCACCAAT+AGG | - | chr1_1:20582210-20582229 | Msa0013290:intron | 30.0% | |
| CTATTTCATGTTCACCAATA+GGG | - | chr1_1:20582211-20582230 | Msa0013290:intron | 30.0% | |
| TCGATAGAGAAAAAAGTCTA+GGG | + | chr1_1:20582319-20582338 | None:intergenic | 30.0% | |
| TTCGATAGAGAAAAAAGTCT+AGG | + | chr1_1:20582320-20582339 | None:intergenic | 30.0% | |
| ! | ATTTTCCAAAACGGAATAAG+CGG | + | chr1_1:20582546-20582565 | None:intergenic | 30.0% |
| ! | GAGGAAGATATTTTCCAAAA+CGG | + | chr1_1:20582555-20582574 | None:intergenic | 30.0% |
| TTTGGAAAATATCTTCCTCT+TGG | - | chr1_1:20582556-20582575 | Msa0013290:intron | 30.0% | |
| TTACTTGATCACATTCCTAT+AGG | - | chr1_1:20582671-20582690 | Msa0013290:intron | 30.0% | |
| TACTTGATCACATTCCTATA+GGG | - | chr1_1:20582672-20582691 | Msa0013290:intron | 30.0% | |
| TCTTTACTGTGTGTTTAATG+TGG | - | chr1_1:20582734-20582753 | Msa0013290:intron | 30.0% | |
| CTTTACTGTGTGTTTAATGT+GGG | - | chr1_1:20582735-20582754 | Msa0013290:intron | 30.0% | |
| AATTAATCCCAAGCCAATTT+AGG | + | chr1_1:20582828-20582847 | None:intergenic | 30.0% | |
| TGTTTGTGCAATTTGAATGT+TGG | - | chr1_1:20582866-20582885 | Msa0013290:intron | 30.0% | |
| TGAATGTTGGAATAATTAGG+TGG | - | chr1_1:20582879-20582898 | Msa0013290:intron | 30.0% | |
| ! | GTTTCTAAAAGACAAAGGAA+AGG | - | chr1_1:20582901-20582920 | Msa0013290:intron | 30.0% |
| !! | ATTTGCTATTGTGATTTGTG+TGG | - | chr1_1:20583151-20583170 | Msa0013290:intron | 30.0% |
| !! | GGTTGTTTTCTTAAATGGTT+AGG | - | chr1_1:20583199-20583218 | Msa0013290:intron | 30.0% |
| TTCTTAAATGGTTAGGCTAT+AGG | - | chr1_1:20583206-20583225 | Msa0013290:intron | 30.0% | |
| TTGAAATCAACTTCTCACAT+CGG | - | chr1_1:20583857-20583876 | Msa0013290:intron | 30.0% | |
| ! | ATGTCAACATCTTTTCACAT+CGG | - | chr1_1:20583912-20583931 | Msa0013290:intron | 30.0% |
| GGCAAAAAACTTATCACATT+TGG | + | chr1_1:20583945-20583964 | None:intergenic | 30.0% | |
| TGTTCATAGTTGGATAAAAG+GGG | + | chr1_1:20584000-20584019 | None:intergenic | 30.0% | |
| CATGTTCATAGTTGGATAAA+AGG | + | chr1_1:20584002-20584021 | None:intergenic | 30.0% | |
| GTGAAATACATGTTCATAGT+TGG | + | chr1_1:20584010-20584029 | None:intergenic | 30.0% | |
| GAACATGTATTTCACTTCAT+TGG | - | chr1_1:20584015-20584034 | Msa0013290:intron | 30.0% | |
| ! | ATTCTTTTTCCCTCCTTAAT+TGG | - | chr1_1:20584129-20584148 | Msa0013290:intron | 30.0% |
| ! | ACTACGGATTATTCCAATTA+AGG | + | chr1_1:20584145-20584164 | None:intergenic | 30.0% |
| ! | TTTTATCATTAGCGTCGTAT+CGG | + | chr1_1:20584283-20584302 | None:intergenic | 30.0% |
| AATGAAGATTCAACATCTCA+AGG | - | chr1_1:20584604-20584623 | Msa0013290:intron | 30.0% | |
| TGAAGATGAAAAAAGTGAAG+AGG | - | chr1_1:20584957-20584976 | Msa0013290:intron | 30.0% | |
| ! | AAACGATATGTTTTACAGCA+AGG | - | chr1_1:20585062-20585081 | Msa0013290:intron | 30.0% |
| GATATGGAAAGAAAAAGCTA+TGG | - | chr1_1:20585157-20585176 | Msa0013290:intron | 30.0% | |
| ! | ATGGTGCCAATATTGTTATT+TGG | + | chr1_1:20585362-20585381 | None:intergenic | 30.0% |
| AATGTGAGGGGAAAAATAAA+TGG | + | chr1_1:20585434-20585453 | None:intergenic | 30.0% | |
| ! | TTTACATAGGGTTTTCACAT+CGG | + | chr1_1:20585466-20585485 | None:intergenic | 30.0% |
| ! | TGTTAAAGCTTCCACAATTT+TGG | + | chr1_1:20585691-20585710 | None:intergenic | 30.0% |
| ACATAATCATTCTGTTTGCT+TGG | + | chr1_1:20585844-20585863 | None:intergenic | 30.0% | |
| !!! | TTTTGGGTTCCAAAAGTAAA+TGG | - | chr1_1:20586310-20586329 | Msa0013290:intron | 30.0% |
| ATGGTGACCAATAATAACAA+AGG | - | chr1_1:20586337-20586356 | Msa0013290:intron | 30.0% | |
| !! | CCTTCTTCCTTTGTTATTAT+TGG | + | chr1_1:20586347-20586366 | None:intergenic | 30.0% |
| CCAATAATAACAAAGGAAGA+AGG | - | chr1_1:20586344-20586363 | Msa0013290:intron | 30.0% | |
| !!! | CATTGTTTTGTTTTATGGGA+TGG | - | chr1_1:20586456-20586475 | Msa0013290:intron | 30.0% |
| CTTTGTTCCATTTACCTATA+TGG | + | chr1_1:20586573-20586592 | None:intergenic | 30.0% | |
| CATATAGGTAAATGGAACAA+AGG | - | chr1_1:20586571-20586590 | Msa0013290:intron | 30.0% | |
| GTAAATGGAACAAAGGTAAA+TGG | - | chr1_1:20586578-20586597 | Msa0013290:intron | 30.0% | |
| AACAATAGTTGAGTGTTATC+TGG | + | chr1_1:20586663-20586682 | None:intergenic | 30.0% | |
| AATCTTCTTGTAACATGAAC+GGG | + | chr1_1:20586879-20586898 | None:intergenic | 30.0% | |
| !!! | GATCTTTTTTCCACTTGATT+TGG | + | chr1_1:20588125-20588144 | None:intergenic | 30.0% |
| TTATTTATTCATTACGCAGG+TGG | + | chr1_1:20588162-20588181 | None:intergenic | 30.0% | |
| ! | TAAAAGGGATATGGATGTTT+TGG | + | chr1_1:20588528-20588547 | None:intergenic | 30.0% |
| GCTTATTTGTAAAAGGGATA+TGG | + | chr1_1:20588537-20588556 | None:intergenic | 30.0% | |
| TTGTGGTTTATATAGAGACT+AGG | + | chr1_1:20588596-20588615 | None:intergenic | 30.0% | |
| TTTAGAAGAAGAGAAAGAAG+TGG | - | chr1_1:20588825-20588844 | Msa0013290:intron | 30.0% | |
| TTAGAAGAAGAGAAAGAAGT+GGG | - | chr1_1:20588826-20588845 | Msa0013290:intron | 30.0% | |
| GTCAACAATATGTTTGCTTA+TGG | - | chr1_1:20580270-20580289 | Msa0013290:intron | 30.0% | |
| CCCAAAAAAAATTGTAGTTG+TGG | - | chr1_1:20589078-20589097 | Msa0013290:intron | 30.0% | |
| !!! | CAACTAAACGAGGTTTTTTA+CGG | + | chr1_1:20589229-20589248 | None:intergenic | 30.0% |
| ! | ATTCACAATGGTTATGCTTT+TGG | - | chr1_1:20589323-20589342 | Msa0013290:intron | 30.0% |
| ! | TTTGGTAAAAGCTAGCTTAA+AGG | - | chr1_1:20589341-20589360 | Msa0013290:intron | 30.0% |
| ! | TTGGTAAAAGCTAGCTTAAA+GGG | - | chr1_1:20589342-20589361 | Msa0013290:intron | 30.0% |
| !! | GTTAGGTATTGAAGATTTGT+TGG | + | chr1_1:20589427-20589446 | None:intergenic | 30.0% |
| AGAATGGCTTATCAATTGAT+TGG | - | chr1_1:20589950-20589969 | Msa0013290:intron | 30.0% | |
| TGTTGTCAATTGACATTCTT+TGG | + | chr1_1:20589982-20590001 | None:intergenic | 30.0% | |
| TTTAAGTGAATTGAACTCTG+AGG | - | chr1_1:20590049-20590068 | Msa0013290:intron | 30.0% | |
| TTAAGTGAATTGAACTCTGA+GGG | - | chr1_1:20590050-20590069 | Msa0013290:intron | 30.0% | |
| TAACTCATCTACAAGGTTAT+GGG | + | chr1_1:20590177-20590196 | None:intergenic | 30.0% | |
| TTAACTCATCTACAAGGTTA+TGG | + | chr1_1:20590178-20590197 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGATCAATGGGAAA+AGG | - | chr1_1:20590247-20590266 | Msa0013290:intron | 30.0% |
| AATAGAGTGAGAACTAATTG+TGG | - | chr1_1:20590323-20590342 | Msa0013290:intron | 30.0% | |
| GATATCCATTGTTCTTTGAA+CGG | + | chr1_1:20590450-20590469 | None:intergenic | 30.0% | |
| !! | ATAAAGTCTTAAGTTGGCAT+GGG | + | chr1_1:20590591-20590610 | None:intergenic | 30.0% |
| ! | ATTCATGGTTTGTGTTATTG+TGG | + | chr1_1:20590653-20590672 | None:intergenic | 30.0% |
| TGAGAGACTCTAATAGAATT+TGG | + | chr1_1:20590676-20590695 | None:intergenic | 30.0% | |
| TTGATATAACCATTAGTCGA+TGG | - | chr1_1:20590759-20590778 | Msa0013290:intron | 30.0% | |
| TGATATAACCATTAGTCGAT+GGG | - | chr1_1:20590760-20590779 | Msa0013290:intron | 30.0% | |
| CTACATAGTGACAAATAAGA+GGG | - | chr1_1:20591024-20591043 | Msa0013290:intron | 30.0% | |
| TACATAGTGACAAATAAGAG+GGG | - | chr1_1:20591025-20591044 | Msa0013290:intron | 30.0% | |
| CCTAATATACAAGTCAAGAA+GGG | + | chr1_1:20591261-20591280 | None:intergenic | 30.0% | |
| !! | CCTTCTTGACTTGTATATTA+GGG | - | chr1_1:20591259-20591278 | Msa0013290:intron | 30.0% |
| ! | AAACATTTTTAACCTTTGGG+TGG | + | chr1_1:20591328-20591347 | None:intergenic | 30.0% |
| ATGTCTTGAAACATTTCGTT+CGG | + | chr1_1:20591481-20591500 | None:intergenic | 30.0% | |
| ATAGTAGAACTATATCAACG+TGG | + | chr1_1:20592282-20592301 | None:intergenic | 30.0% | |
| ! | TTTCTCTTTGTTGTGAATGA+TGG | + | chr1_1:20592310-20592329 | None:intergenic | 30.0% |
| TTCTAAACCATCTTTGGATT+TGG | + | chr1_1:20592482-20592501 | None:intergenic | 30.0% | |
| !! | ACATATTGTTGACTCAGATA+AGG | + | chr1_1:20592569-20592588 | None:intergenic | 30.0% |
| GTCAACAATATGTTTGCTTA+TGG | - | chr1_1:20580270-20580289 | Msa0013290:intron | 30.0% | |
| ! | TGCATCTCTTTTCAAACTTT+CGG | - | chr1_1:20592785-20592804 | Msa0013290:intron | 30.0% |
| TCGTTCATAAAGCTAACATT+AGG | + | chr1_1:20592827-20592846 | None:intergenic | 30.0% | |
| TATATCTCCTATTTCAGACT+TGG | - | chr1_1:20592962-20592981 | Msa0013290:CDS | 30.0% | |
| TTGACCAAAAAGACCAAAGA+TGG | - | chr1_1:20580175-20580194 | Msa0013290:intron | 35.0% | |
| CACTTCTTCTAAACCATCTT+TGG | + | chr1_1:20580191-20580210 | None:intergenic | 35.0% | |
| CAAAGATGGTTTAGAAGAAG+TGG | - | chr1_1:20580189-20580208 | Msa0013290:intron | 35.0% | |
| AGTGGGAATTCAATCTCAAA+AGG | - | chr1_1:20580207-20580226 | Msa0013290:intron | 35.0% | |
| CAATAGGAACTTCATTGACA+TGG | - | chr1_1:20580558-20580577 | Msa0013290:CDS | 35.0% | |
| !!! | CTTCATTGACATGGTTTTGT+AGG | - | chr1_1:20580567-20580586 | Msa0013290:CDS | 35.0% |
| !! | GTGTGTGAGTTTATTTTCAG+TGG | - | chr1_1:20580954-20580973 | Msa0013290:intron | 35.0% |
| !! | CTTTTTAGTCTATGACTGCT+GGG | + | chr1_1:20581060-20581079 | None:intergenic | 35.0% |
| !! | AAGTTATTGGATGGGTTTTC+TGG | + | chr1_1:20581108-20581127 | None:intergenic | 35.0% |
| AGAAAACCCATCCAATAACT+TGG | - | chr1_1:20581107-20581126 | Msa0013290:intron | 35.0% | |
| GTGACCATGCTTGAAATATA+TGG | + | chr1_1:20581189-20581208 | None:intergenic | 35.0% | |
| ! | GAACTAATTTGCAGTTTCCT+TGG | + | chr1_1:20581227-20581246 | None:intergenic | 35.0% |
| !!! | AGTATGTTTTAGGGATGAGA+TGG | - | chr1_1:20581352-20581371 | Msa0013290:intron | 35.0% |
| !!! | GGTGTTTTTAGTGGTGTTTT+TGG | + | chr1_1:20581724-20581743 | None:intergenic | 35.0% |
| !!! | TGGTATGGTACTTGTTTTAG+TGG | + | chr1_1:20581745-20581764 | None:intergenic | 35.0% |
| TGTGGAGGAAATTAGGAAAT+GGG | - | chr1_1:20582234-20582253 | Msa0013290:intron | 35.0% | |
| !!! | ATGGGAGTAATACTAGCTTT+TGG | - | chr1_1:20582252-20582271 | Msa0013290:intron | 35.0% |
| !!! | GAGTAATACTAGCTTTTGGA+AGG | - | chr1_1:20582256-20582275 | Msa0013290:intron | 35.0% |
| !! | TAGCTTTTGGAAGGAAAGAT+GGG | - | chr1_1:20582265-20582284 | Msa0013290:intron | 35.0% |
| TATCGAATGAAAAGGAAGCT+AGG | - | chr1_1:20582333-20582352 | Msa0013290:intron | 35.0% | |
| ATCGAATGAAAAGGAAGCTA+GGG | - | chr1_1:20582334-20582353 | Msa0013290:intron | 35.0% | |
| AGATCATACTCCCACATAAA+CGG | + | chr1_1:20582422-20582441 | None:intergenic | 35.0% | |
| ! | ACATAACTTGATGGCTATGT+TGG | - | chr1_1:20582445-20582464 | Msa0013290:intron | 35.0% |
| !! | TGATGTGGGAGATTTTAATG+AGG | - | chr1_1:20582583-20582602 | Msa0013290:intron | 35.0% |
| !! | GATGTGGGAGATTTTAATGA+GGG | - | chr1_1:20582584-20582603 | Msa0013290:intron | 35.0% |
| !! | ATGTGGGAGATTTTAATGAG+GGG | - | chr1_1:20582585-20582604 | Msa0013290:intron | 35.0% |
| ACTTGATCACATTCCTATAG+GGG | - | chr1_1:20582673-20582692 | Msa0013290:intron | 35.0% | |
| ! | AGGTGGTTTCTAAAAGACAA+AGG | - | chr1_1:20582896-20582915 | Msa0013290:intron | 35.0% |
| !! | GGAAAGGTTTTTCGTTGATT+TGG | - | chr1_1:20582917-20582936 | Msa0013290:intron | 35.0% |
| TTCTATTTAGGCACTCTCTA+GGG | + | chr1_1:20583107-20583126 | None:intergenic | 35.0% | |
| GTGCCTAAATAGAAGATGAA+AGG | - | chr1_1:20583113-20583132 | Msa0013290:intron | 35.0% | |
| GCACCTTTCATCTTCTATTT+AGG | + | chr1_1:20583119-20583138 | None:intergenic | 35.0% | |
| !!! | ATGAAAGGTGCTGTCTTTTT+TGG | - | chr1_1:20583128-20583147 | Msa0013290:intron | 35.0% |
| !! | GTGCAGGTTGTTTTCTTAAA+TGG | - | chr1_1:20583194-20583213 | Msa0013290:intron | 35.0% |
| TAAATGGTTAGGCTATAGGA+AGG | - | chr1_1:20583210-20583229 | Msa0013290:intron | 35.0% | |
| AAATGGTTAGGCTATAGGAA+GGG | - | chr1_1:20583211-20583230 | Msa0013290:intron | 35.0% | |
| ! | AGCGACTCCTATTTTATTCT+GGG | + | chr1_1:20583654-20583673 | None:intergenic | 35.0% |
| ! | AAGCGACTCCTATTTTATTC+TGG | + | chr1_1:20583655-20583674 | None:intergenic | 35.0% |
| TGAAATCAACTTCTCACATC+GGG | - | chr1_1:20583858-20583877 | Msa0013290:intron | 35.0% | |
| ATAAAAGGGGGATTTCACAT+CGG | + | chr1_1:20583987-20584006 | None:intergenic | 35.0% | |
| GTTCATAGTTGGATAAAAGG+GGG | + | chr1_1:20583999-20584018 | None:intergenic | 35.0% | |
| CGGATTATTCCAATTAAGGA+GGG | + | chr1_1:20584141-20584160 | None:intergenic | 35.0% | |
| ! | ACGGATTATTCCAATTAAGG+AGG | + | chr1_1:20584142-20584161 | None:intergenic | 35.0% |
| ACTCAGATACCTAATCGTAT+AGG | - | chr1_1:20584351-20584370 | Msa0013290:CDS | 35.0% | |
| ATAGACAGAAACACATCCTA+GGG | - | chr1_1:20584430-20584449 | Msa0013290:intron | 35.0% | |
| TGTCGCATAAACACAACTAT+AGG | - | chr1_1:20584466-20584485 | Msa0013290:intron | 35.0% | |
| ! | TGGTATTTGCTACTGCTATT+TGG | + | chr1_1:20584495-20584514 | None:intergenic | 35.0% |
| !! | CTCTAAGATTGCAAATCTGA+GGG | - | chr1_1:20584749-20584768 | Msa0013290:intron | 35.0% |
| ACTCGTTTGTGAAATTACGA+TGG | - | chr1_1:20584818-20584837 | Msa0013290:intron | 35.0% | |
| TGAGACTTAAGTCAAAAGGT+AGG | - | chr1_1:20585129-20585148 | Msa0013290:intron | 35.0% | |
| GAGACTTAAGTCAAAAGGTA+GGG | - | chr1_1:20585130-20585149 | Msa0013290:intron | 35.0% | |
| CAAAAGGTAGGGAAAAGATA+TGG | - | chr1_1:20585141-20585160 | Msa0013290:intron | 35.0% | |
| AAAGAAAAAGCTATGGTCGT+CGG | - | chr1_1:20585164-20585183 | Msa0013290:intron | 35.0% | |
| TCAGATCGACGACAAAAAAA+AGG | - | chr1_1:20585225-20585244 | Msa0013290:intron | 35.0% | |
| ! | TGTGAGATAAATGGCTTTTC+CGG | - | chr1_1:20585252-20585271 | Msa0013290:intron | 35.0% |
| TCGGTGGATAAAAAATGTGA+GGG | + | chr1_1:20585447-20585466 | None:intergenic | 35.0% | |
| ATCGGTGGATAAAAAATGTG+AGG | + | chr1_1:20585448-20585467 | None:intergenic | 35.0% | |
| CTATGTGAAATTGAACACAG+TGG | + | chr1_1:20585511-20585530 | None:intergenic | 35.0% | |
| CACTGTGTTCAATTTCACAT+AGG | - | chr1_1:20585509-20585528 | Msa0013290:intron | 35.0% | |
| TAGTCCCTATTACAACTGTA+TGG | + | chr1_1:20585646-20585665 | None:intergenic | 35.0% | |
| AATTGCTATCACGAAACAAC+AGG | - | chr1_1:20586188-20586207 | Msa0013290:intron | 35.0% | |
| TAATAACAAAGGAAGAAGGG+TGG | - | chr1_1:20586348-20586367 | Msa0013290:intron | 35.0% | |
| AAGCATGCAACTTAACTTTG+TGG | - | chr1_1:20586417-20586436 | Msa0013290:intron | 35.0% | |
| CACACATCCATATAGGTAAA+TGG | - | chr1_1:20586563-20586582 | Msa0013290:intron | 35.0% | |
| TGTATAATATGAACGGGTAG+CGG | + | chr1_1:20586776-20586795 | None:intergenic | 35.0% | |
| AACCTATGTTACAATGTGGA+CGG | + | chr1_1:20586814-20586833 | None:intergenic | 35.0% | |
| ATCTTCTTGTAACATGAACG+GGG | + | chr1_1:20586878-20586897 | None:intergenic | 35.0% | |
| TGCAACAATTACGATGTCTA+TGG | + | chr1_1:20587214-20587233 | None:intergenic | 35.0% | |
| !!! | TATATTTTTTGGGGTAGCCT+TGG | + | chr1_1:20587355-20587374 | None:intergenic | 35.0% |
| GGTCGGTATGTATTTATATC+CGG | - | chr1_1:20587388-20587407 | Msa0013290:intron | 35.0% | |
| !! | TTTTGCAGCTGAACTTGTTT+GGG | + | chr1_1:20587442-20587461 | None:intergenic | 35.0% |
| !! | TTTTTGCAGCTGAACTTGTT+TGG | + | chr1_1:20587443-20587462 | None:intergenic | 35.0% |
| !! | GTTTTGGTACTCATAATTGG+TGG | + | chr1_1:20587966-20587985 | None:intergenic | 35.0% |
| !! | TTCAGGTTTTGTGGAATGAA+CGG | + | chr1_1:20588092-20588111 | None:intergenic | 35.0% |
| ! | GTTTTGTCTTGCCCAATTTT+TGG | + | chr1_1:20588257-20588276 | None:intergenic | 35.0% |
| AAACTGTGGAATTATTCCTG+TGG | + | chr1_1:20588332-20588351 | None:intergenic | 35.0% | |
| ! | CTTATTACCTTTTGCATGAG+TGG | + | chr1_1:20588400-20588419 | None:intergenic | 35.0% |
| GTAAGCAGCCAATAAATCAT+TGG | - | chr1_1:20588446-20588465 | Msa0013290:intron | 35.0% | |
| CATTGGAACGAATATCCTAT+AGG | - | chr1_1:20588463-20588482 | Msa0013290:intron | 35.0% | |
| TTTGGATACTCTTGGATTCA+TGG | + | chr1_1:20588510-20588529 | None:intergenic | 35.0% | |
| !! | ATGGATGTTTTGGATACTCT+TGG | + | chr1_1:20588518-20588537 | None:intergenic | 35.0% |
| !! | GTTTTGAGTGATAGCTGTAA+TGG | + | chr1_1:20588626-20588645 | None:intergenic | 35.0% |
| !! | TAAACCATCTTTGGCTTTCT+TGG | + | chr1_1:20588809-20588828 | None:intergenic | 35.0% |
| CTCTTCTTCTAAACCATCTT+TGG | + | chr1_1:20588818-20588837 | None:intergenic | 35.0% | |
| AGTGGGAATTCAATCTCAAA+AGG | - | chr1_1:20580207-20580226 | Msa0013290:intron | 35.0% | |
| !! | GAAGATTTGTTGGAGTATCA+GGG | + | chr1_1:20589417-20589436 | None:intergenic | 35.0% |
| !! | TGAAGATTTGTTGGAGTATC+AGG | + | chr1_1:20589418-20589437 | None:intergenic | 35.0% |
| AACGTATGAGAAGTAGACTT+AGG | + | chr1_1:20589469-20589488 | None:intergenic | 35.0% | |
| AAATCTCAGAGCATGTGATT+AGG | + | chr1_1:20589671-20589690 | None:intergenic | 35.0% | |
| !! | TAATCACATGCTCTGAGATT+TGG | - | chr1_1:20589670-20589689 | Msa0013290:intron | 35.0% |
| !! | AATCACATGCTCTGAGATTT+GGG | - | chr1_1:20589671-20589690 | Msa0013290:intron | 35.0% |
| TTGTTGGAGTGATGATAAAG+AGG | - | chr1_1:20589724-20589743 | Msa0013290:intron | 35.0% | |
| TGTTGGAGTGATTGATAAAG+AGG | + | chr1_1:20589751-20589770 | None:intergenic | 35.0% | |
| TCAACTTATGTAGAATCAGC+CGG | - | chr1_1:20589851-20589870 | Msa0013290:intron | 35.0% | |
| ! | GAAGGTATATAATGGCTTGA+TGG | - | chr1_1:20589913-20589932 | Msa0013290:intron | 35.0% |
| ! | GTATATAATGGCTTGATGGT+TGG | - | chr1_1:20589917-20589936 | Msa0013290:intron | 35.0% |
| AAGGAGTTAACTCATCTACA+AGG | + | chr1_1:20590184-20590203 | None:intergenic | 35.0% | |
| AACATATTCATTGTCCCTCA+AGG | - | chr1_1:20590409-20590428 | Msa0013290:intron | 35.0% | |
| !! | GATAAAGTCTTAAGTTGGCA+TGG | + | chr1_1:20590592-20590611 | None:intergenic | 35.0% |
| TTCTATTAGAGTCTCTCAAG+AGG | - | chr1_1:20590678-20590697 | Msa0013290:intron | 35.0% | |
| TCTATTAGAGTCTCTCAAGA+GGG | - | chr1_1:20590679-20590698 | Msa0013290:intron | 35.0% | |
| CTTTCTTTGACAATCTAGCT+AGG | + | chr1_1:20590722-20590741 | None:intergenic | 35.0% | |
| !!! | TTTTGGGCTCTAAAAGTTAG+TGG | - | chr1_1:20591001-20591020 | Msa0013290:intron | 35.0% |
| GCTACATAGTGACAAATAAG+AGG | - | chr1_1:20591023-20591042 | Msa0013290:intron | 35.0% | |
| AAGTTACATGGTCATGAAAC+AGG | + | chr1_1:20591172-20591191 | None:intergenic | 35.0% | |
| TGACCATGTAACTTACTTTG+TGG | - | chr1_1:20591178-20591197 | Msa0013290:intron | 35.0% | |
| !! | CCCTTCTTGACTTGTATATT+AGG | - | chr1_1:20591258-20591277 | Msa0013290:intron | 35.0% |
| CCCTAATATACAAGTCAAGA+AGG | + | chr1_1:20591262-20591281 | None:intergenic | 35.0% | |
| !! | ATATCCGTTCTAAAGCAGAA+TGG | - | chr1_1:20591446-20591465 | Msa0013290:intron | 35.0% |
| !! | CTTTCCATTCTGCTTTAGAA+CGG | + | chr1_1:20591453-20591472 | None:intergenic | 35.0% |
| !!! | GGTGTTCCTTTCCTTTTTTA+AGG | + | chr1_1:20591632-20591651 | None:intergenic | 35.0% |
| AAAGAATATCCCATTCCCAT+TGG | - | chr1_1:20592142-20592161 | Msa0013290:intron | 35.0% | |
| TTGGATCCTCTTGAATTTAG+TGG | + | chr1_1:20592185-20592204 | None:intergenic | 35.0% | |
| ! | TAAAAGGGATGTGGATGTTT+TGG | + | chr1_1:20592204-20592223 | None:intergenic | 35.0% |
| AAGCGTGTAGGGTTATAAAA+GGG | + | chr1_1:20592219-20592238 | None:intergenic | 35.0% | |
| AAAGCGTGTAGGGTTATAAA+AGG | + | chr1_1:20592220-20592239 | None:intergenic | 35.0% | |
| TAGAACTTTCTCTTTGAGCT+TGG | + | chr1_1:20592440-20592459 | None:intergenic | 35.0% | |
| CTCTTCTTCTAAACCATCTT+TGG | + | chr1_1:20588818-20588837 | None:intergenic | 35.0% | |
| AGATGGTTTAGAAGAAGAGA+AGG | - | chr1_1:20588819-20588838 | Msa0013290:intron | 35.0% | |
| TTAGAAGAAGAGAAGGAAGT+TGG | - | chr1_1:20592496-20592515 | Msa0013290:intron | 35.0% | |
| ! | GCATCTCTTTTCAAACTTTC+GGG | - | chr1_1:20592786-20592805 | Msa0013290:intron | 35.0% |
| GGGGTTCAATGGAAACTAAA+AGG | + | chr1_1:20580603-20580622 | None:intergenic | 40.0% | |
| TTTCCTTCCAGCTATCAACA+GGG | + | chr1_1:20580794-20580813 | None:intergenic | 40.0% | |
| ! | TTTTCCTTCCAGCTATCAAC+AGG | + | chr1_1:20580795-20580814 | None:intergenic | 40.0% |
| !! | GCTTTTTAGTCTATGACTGC+TGG | + | chr1_1:20581061-20581080 | None:intergenic | 40.0% |
| AATATTCACCTCACGTCTAG+CGG | + | chr1_1:20581249-20581268 | None:intergenic | 40.0% | |
| !! | CATGTAGTTTGTGGTGGTTT+TGG | + | chr1_1:20581896-20581915 | None:intergenic | 40.0% |
| AGATACACTGGTATGGTAGT+TGG | + | chr1_1:20581923-20581942 | None:intergenic | 40.0% | |
| TAATTTCCTCCACACCCTAT+TGG | + | chr1_1:20582228-20582247 | None:intergenic | 40.0% | |
| AATAGGGTGTGGAGGAAATT+AGG | - | chr1_1:20582227-20582246 | Msa0013290:intron | 40.0% | |
| GTGTGGAGGAAATTAGGAAA+TGG | - | chr1_1:20582233-20582252 | Msa0013290:intron | 40.0% | |
| !! | CTAGCTTTTGGAAGGAAAGA+TGG | - | chr1_1:20582264-20582283 | Msa0013290:intron | 40.0% |
| !! | TTTTGGAAGGAAAGATGGGT+AGG | - | chr1_1:20582269-20582288 | Msa0013290:intron | 40.0% |
| AATGAAAAGGAAGCTAGGGT+GGG | - | chr1_1:20582338-20582357 | Msa0013290:intron | 40.0% | |
| ATGTGGTTGTGTTCCAAAGA+GGG | - | chr1_1:20582363-20582382 | Msa0013290:intron | 40.0% | |
| GATCATACTCCCACATAAAC+GGG | + | chr1_1:20582421-20582440 | None:intergenic | 40.0% | |
| ! | TAACTTGATGGCTATGTTGG+AGG | - | chr1_1:20582448-20582467 | Msa0013290:intron | 40.0% |
| !!! | TTGGAGGAGGTTGTTTTTTG+TGG | - | chr1_1:20582464-20582483 | Msa0013290:intron | 40.0% |
| GAAAATAAACCATCCTCCTC+CGG | + | chr1_1:20582515-20582534 | None:intergenic | 40.0% | |
| !! | GGAGGAGGATGGTTTATTTT+CGG | - | chr1_1:20582514-20582533 | Msa0013290:intron | 40.0% |
| ! | CAAATCCGCTTATTCCGTTT+TGG | - | chr1_1:20582538-20582557 | Msa0013290:intron | 40.0% |
| TTCCTCTTGGAAGATGATGT+GGG | - | chr1_1:20582569-20582588 | Msa0013290:intron | 40.0% | |
| ATGGCTAGATTATCCCCTAT+AGG | + | chr1_1:20582689-20582708 | None:intergenic | 40.0% | |
| TACTGTGTGTTTAATGTGGG+AGG | - | chr1_1:20582738-20582757 | Msa0013290:intron | 40.0% | |
| GCGATGTCTCCTCTTTAATT+TGG | - | chr1_1:20582794-20582813 | Msa0013290:intron | 40.0% | |
| GATTCCACGCCAAATTAAAG+AGG | + | chr1_1:20582806-20582825 | None:intergenic | 40.0% | |
| TTTGGCGTGGAATCCTAAAT+TGG | - | chr1_1:20582812-20582831 | Msa0013290:intron | 40.0% | |
| ! | GTGGAATCCTAAATTGGCTT+GGG | - | chr1_1:20582818-20582837 | Msa0013290:intron | 40.0% |
| ! | TGATTTGGCATGCCACAATT+CGG | - | chr1_1:20582932-20582951 | Msa0013290:intron | 40.0% |
| ATGCCACAATTCGGTTGATT+TGG | - | chr1_1:20582941-20582960 | Msa0013290:intron | 40.0% | |
| CTTCCAAATCAACCGAATTG+TGG | + | chr1_1:20582947-20582966 | None:intergenic | 40.0% | |
| !! | CACAATTCGGTTGATTTGGA+AGG | - | chr1_1:20582945-20582964 | Msa0013290:intron | 40.0% |
| CAACAACAAAGAGAAGGAAG+TGG | - | chr1_1:20582987-20583006 | Msa0013290:intron | 40.0% | |
| ! | GTTAGTGGACGAGATTAAAG+CGG | - | chr1_1:20583014-20583033 | Msa0013290:intron | 40.0% |
| ACGAGATTAAAGCGGTTTCT+TGG | - | chr1_1:20583022-20583041 | Msa0013290:intron | 40.0% | |
| CGAGATTAAAGCGGTTTCTT+GGG | - | chr1_1:20583023-20583042 | Msa0013290:intron | 40.0% | |
| TTAAAGCGGTTTCTTGGGTT+TGG | - | chr1_1:20583028-20583047 | Msa0013290:intron | 40.0% | |
| ! | CATCGTTCCTCTTTTATGAG+CGG | - | chr1_1:20583073-20583092 | Msa0013290:intron | 40.0% |
| CTTCTATTTAGGCACTCTCT+AGG | + | chr1_1:20583108-20583127 | None:intergenic | 40.0% | |
| ! | CTATTGTGATTTGTGTGGCT+CGG | - | chr1_1:20583156-20583175 | Msa0013290:intron | 40.0% |
| AGCAAAAAAAAAACGGCCAC+AGG | + | chr1_1:20583275-20583294 | None:intergenic | 40.0% | |
| GAAAAACCAGCAGCAATTCA+GGG | + | chr1_1:20583305-20583324 | None:intergenic | 40.0% | |
| CGCTTGTAAAGTTTCAAGCA+AGG | - | chr1_1:20583670-20583689 | Msa0013290:intron | 40.0% | |
| AAAGTTTCAAGCAAGGAGTG+AGG | - | chr1_1:20583677-20583696 | Msa0013290:intron | 40.0% | |
| GTGGAAAGAGAAAATACGAG+TGG | - | chr1_1:20583746-20583765 | Msa0013290:intron | 40.0% | |
| GAAAGAGAAAATACGAGTGG+AGG | - | chr1_1:20583749-20583768 | Msa0013290:intron | 40.0% | |
| ACATCACCTTTAGGTACATC+GGG | + | chr1_1:20583889-20583908 | None:intergenic | 40.0% | |
| CACATCACCTTTAGGTACAT+CGG | + | chr1_1:20583890-20583909 | None:intergenic | 40.0% | |
| TGACATACCACATCACCTTT+AGG | + | chr1_1:20583898-20583917 | None:intergenic | 40.0% | |
| GCATGAACACCTATACGATT+AGG | + | chr1_1:20584363-20584382 | None:intergenic | 40.0% | |
| GATAGACAGAAACACATCCT+AGG | - | chr1_1:20584429-20584448 | Msa0013290:intron | 40.0% | |
| ACATTCATCTATAGAGCCCT+AGG | + | chr1_1:20584449-20584468 | None:intergenic | 40.0% | |
| GGTTCACAAGAACTCAGATT+CGG | + | chr1_1:20584673-20584692 | None:intergenic | 40.0% | |
| TCTGAGTTCTTGTGAACCTT+AGG | - | chr1_1:20584675-20584694 | Msa0013290:intron | 40.0% | |
| !! | GCTCTAAGATTGCAAATCTG+AGG | - | chr1_1:20584748-20584767 | Msa0013290:intron | 40.0% |
| TACGATGGTTGAGTCATTTG+TGG | - | chr1_1:20584833-20584852 | Msa0013290:intron | 40.0% | |
| ! | TTGAGTCATTTGTGGCTCTA+AGG | - | chr1_1:20584841-20584860 | Msa0013290:intron | 40.0% |
| !! | TGAGTCATTTGTGGCTCTAA+GGG | - | chr1_1:20584842-20584861 | Msa0013290:intron | 40.0% |
| TCTAAGGGTTGAATCGTTTG+TGG | - | chr1_1:20584857-20584876 | Msa0013290:intron | 40.0% | |
| GATTTCGCTGAGATTTCCAT+GGG | - | chr1_1:20584898-20584917 | Msa0013290:intron | 40.0% | |
| ! | TTTTACAGCAAGGCTCAGTT+CGG | - | chr1_1:20585072-20585091 | Msa0013290:intron | 40.0% |
| GTGGTGAGACTTAAGTCAAA+AGG | - | chr1_1:20585125-20585144 | Msa0013290:intron | 40.0% | |
| !!! | CTCACACAAAAGCATTTTGC+CGG | + | chr1_1:20585274-20585293 | None:intergenic | 40.0% |
| !! | ATGCTTTTGTGTGAGAGCAT+AGG | - | chr1_1:20585279-20585298 | Msa0013290:intron | 40.0% |
| !! | TGCTTTTGTGTGAGAGCATA+GGG | - | chr1_1:20585280-20585299 | Msa0013290:intron | 40.0% |
| TCGGTGGATATAATAGGTGA+GGG | + | chr1_1:20585396-20585415 | None:intergenic | 40.0% | |
| TACACCTCGGTGGATATAAT+AGG | + | chr1_1:20585402-20585421 | None:intergenic | 40.0% | |
| ATGGTAAAGAGCTTACACCT+CGG | + | chr1_1:20585415-20585434 | None:intergenic | 40.0% | |
| CGGTGGATAAAAAATGTGAG+GGG | + | chr1_1:20585446-20585465 | None:intergenic | 40.0% | |
| CATAGGTATATGCTTGACTG+AGG | - | chr1_1:20585526-20585545 | Msa0013290:intron | 40.0% | |
| TTTACTACCCTAAACGAGCT+AGG | - | chr1_1:20586246-20586265 | Msa0013290:intron | 40.0% | |
| TCCAAAAGTAAATGGCTGCA+TGG | - | chr1_1:20586318-20586337 | Msa0013290:intron | 40.0% | |
| ! | ACCATGCAGCCATTTACTTT+TGG | + | chr1_1:20586322-20586341 | None:intergenic | 40.0% |
| TAACACACGAATTGTACGCT+TGG | - | chr1_1:20586389-20586408 | Msa0013290:intron | 40.0% | |
| ! | GTTTTATGGGATGGGATAGA+CGG | - | chr1_1:20586465-20586484 | Msa0013290:intron | 40.0% |
| CACATGTCACACATCCATAT+AGG | - | chr1_1:20586556-20586575 | Msa0013290:intron | 40.0% | |
| !! | ATGATGTTAAAGGTGTTGGG+AGG | - | chr1_1:20586836-20586855 | Msa0013290:intron | 40.0% |
| !! | TGATGTTAAAGGTGTTGGGA+GGG | - | chr1_1:20586837-20586856 | Msa0013290:intron | 40.0% |
| ATCGTAATTGTTGCAGCACA+AGG | - | chr1_1:20587219-20587238 | Msa0013290:intron | 40.0% | |
| AAGGTGTGTCAGAACAATCA+CGG | - | chr1_1:20587238-20587257 | Msa0013290:intron | 40.0% | |
| ! | TTTGCAGCTGAACTTGTTTG+GGG | + | chr1_1:20587441-20587460 | None:intergenic | 40.0% |
| CTAGCAGAAAATTTACGCAG+GGG | + | chr1_1:20587922-20587941 | None:intergenic | 40.0% | |
| GCTAGCAGAAAATTTACGCA+GGG | + | chr1_1:20587923-20587942 | None:intergenic | 40.0% | |
| AGCTAGCAGAAAATTTACGC+AGG | + | chr1_1:20587924-20587943 | None:intergenic | 40.0% | |
| !! | TTTCGTGTGTTCAGGTTTTG+TGG | + | chr1_1:20588101-20588120 | None:intergenic | 40.0% |
| CATGGAAGGAATACACCTAT+AGG | + | chr1_1:20588481-20588500 | None:intergenic | 40.0% | |
| ATAGGTGTATTCCTTCCATG+TGG | - | chr1_1:20588481-20588500 | Msa0013290:intron | 40.0% | |
| ! | GCTGTAATGGAGCTATATTG+TGG | + | chr1_1:20588613-20588632 | None:intergenic | 40.0% |
| AGTGAGAAAAATGTCAGCCA+TGG | - | chr1_1:20588735-20588754 | Msa0013290:intron | 40.0% | |
| AAAAATGTCAGCCATGGTAG+AGG | - | chr1_1:20588741-20588760 | Msa0013290:intron | 40.0% | |
| CGTTAATCCTTAACACTACC+TGG | - | chr1_1:20589485-20589504 | Msa0013290:intron | 40.0% | |
| ACAATTAGCTCGTTTGTGGT+TGG | + | chr1_1:20589708-20589727 | None:intergenic | 40.0% | |
| ACCACAAACGAGCTAATTGT+TGG | - | chr1_1:20589708-20589727 | Msa0013290:intron | 40.0% | |
| TCCAACAATTAGCTCGTTTG+TGG | + | chr1_1:20589712-20589731 | None:intergenic | 40.0% | |
| CAACTATCGTTGTCGATGTA+AGG | + | chr1_1:20590152-20590171 | None:intergenic | 40.0% | |
| ! | TCAATGAAGGCTGACTCAAT+TGG | + | chr1_1:20590208-20590227 | None:intergenic | 40.0% |
| ATTCATTGTCCCTCAAGGTA+TGG | - | chr1_1:20590414-20590433 | Msa0013290:intron | 40.0% | |
| TTCATTGTCCCTCAAGGTAT+GGG | - | chr1_1:20590415-20590434 | Msa0013290:intron | 40.0% | |
| ! | TAGCTAGGTAATGCAGGTTT+TGG | + | chr1_1:20590707-20590726 | None:intergenic | 40.0% |
| ACAATCTAGCTAGGTAATGC+AGG | + | chr1_1:20590713-20590732 | None:intergenic | 40.0% | |
| TTGCCTTTCTTCATGTTCGT+TGG | + | chr1_1:20590788-20590807 | None:intergenic | 40.0% | |
| GTTGTATCTTAGTGAAAGCG+TGG | - | chr1_1:20590896-20590915 | Msa0013290:intron | 40.0% | |
| TGACAAATAAGAGGGGAAGA+AGG | - | chr1_1:20591032-20591051 | Msa0013290:intron | 40.0% | |
| GACAAATAAGAGGGGAAGAA+GGG | - | chr1_1:20591033-20591052 | Msa0013290:intron | 40.0% | |
| TTCCAAGCATACAATCCTTC+TGG | + | chr1_1:20591077-20591096 | None:intergenic | 40.0% | |
| CATGAAACAGGACAACACAA+TGG | + | chr1_1:20591160-20591179 | None:intergenic | 40.0% | |
| GAGCCACAAAGTAAGTTACA+TGG | + | chr1_1:20591184-20591203 | None:intergenic | 40.0% | |
| ATATACAAGTCAAGAAGGGC+AGG | + | chr1_1:20591257-20591276 | None:intergenic | 40.0% | |
| TTTAATCTCACTCCACCCAA+AGG | - | chr1_1:20591313-20591332 | Msa0013290:intron | 40.0% | |
| AGGAGATAAACATAGGGTCA+TGG | + | chr1_1:20591612-20591631 | None:intergenic | 40.0% | |
| AGGAATACACCAATGGGAAT+GGG | + | chr1_1:20592154-20592173 | None:intergenic | 40.0% | |
| AAGGAATACACCAATGGGAA+TGG | + | chr1_1:20592155-20592174 | None:intergenic | 40.0% | |
| CATGGAAGGAATACACCAAT+GGG | + | chr1_1:20592160-20592179 | None:intergenic | 40.0% | |
| ACATGGAAGGAATACACCAA+TGG | + | chr1_1:20592161-20592180 | None:intergenic | 40.0% | |
| TGAATTTAGTGGCACATGGA+AGG | + | chr1_1:20592174-20592193 | None:intergenic | 40.0% | |
| CTCTTGAATTTAGTGGCACA+TGG | + | chr1_1:20592178-20592197 | None:intergenic | 40.0% | |
| ! | CATGTGCCACTAAATTCAAG+AGG | - | chr1_1:20592176-20592195 | Msa0013290:intron | 40.0% |
| GTAGGGTTATAAAAGGGATG+TGG | + | chr1_1:20592213-20592232 | None:intergenic | 40.0% | |
| ! | CATTTGAGAGAAAGCGTGTA+GGG | + | chr1_1:20592230-20592249 | None:intergenic | 40.0% |
| ! | TCATTTGAGAGAAAGCGTGT+AGG | + | chr1_1:20592231-20592250 | None:intergenic | 40.0% |
| AAGAAGAGAAGGAAGTTGGA+AGG | - | chr1_1:20592500-20592519 | Msa0013290:intron | 40.0% | |
| AGAAGAGAAGGAAGTTGGAA+GGG | - | chr1_1:20592501-20592520 | Msa0013290:intron | 40.0% | |
| ! | ACTTGAGCCAAGTCTGAAAT+AGG | + | chr1_1:20592972-20592991 | None:intergenic | 40.0% |
| CTAGTGAGCAAGTCTATTAG+TGG | + | chr1_1:20593000-20593019 | None:intergenic | 40.0% | |
| ACCAATCCATACCTCTACCA+TGG | + | chr1_1:20580128-20580147 | None:intergenic | 45.0% | |
| GCACCAAATTCTTGTTGCCA+CGG | - | chr1_1:20580734-20580753 | Msa0013290:intron | 45.0% | |
| CTACCGTGGCAACAAGAATT+TGG | + | chr1_1:20580740-20580759 | None:intergenic | 45.0% | |
| ACACACAACTGTGAGTTCTC+GGG | + | chr1_1:20580940-20580959 | None:intergenic | 45.0% | |
| CACACACAACTGTGAGTTCT+CGG | + | chr1_1:20580941-20580960 | None:intergenic | 45.0% | |
| AATTAGTTCCGCTAGACGTG+AGG | - | chr1_1:20581238-20581257 | Msa0013290:intron | 45.0% | |
| GTTGGCATGCATGTAGTTTG+TGG | + | chr1_1:20581905-20581924 | None:intergenic | 45.0% | |
| TCATGTTCACCAATAGGGTG+TGG | - | chr1_1:20582216-20582235 | Msa0013290:intron | 45.0% | |
| GAATGAAAAGGAAGCTAGGG+TGG | - | chr1_1:20582337-20582356 | Msa0013290:intron | 45.0% | |
| ATGAAAAGGAAGCTAGGGTG+GGG | - | chr1_1:20582339-20582358 | Msa0013290:intron | 45.0% | |
| GATGTGGTTGTGTTCCAAAG+AGG | - | chr1_1:20582362-20582381 | Msa0013290:intron | 45.0% | |
| TGTGGTTGTGTTCCAAAGAG+GGG | - | chr1_1:20582364-20582383 | Msa0013290:intron | 45.0% | |
| GTGTGTGGAATACAACATGG+AGG | - | chr1_1:20582390-20582409 | Msa0013290:intron | 45.0% | |
| TGTGGAATACAACATGGAGG+AGG | - | chr1_1:20582393-20582412 | Msa0013290:intron | 45.0% | |
| !!! | GGAGGTTGTTTTTTGTGGTG+AGG | - | chr1_1:20582469-20582488 | Msa0013290:intron | 45.0% |
| !!! | GGTTGTTTTTTGTGGTGAGG+AGG | - | chr1_1:20582472-20582491 | Msa0013290:intron | 45.0% |
| TTTGTGGTGAGGAGGATAAG+TGG | - | chr1_1:20582480-20582499 | Msa0013290:intron | 45.0% | |
| TTGTGGTGAGGAGGATAAGT+GGG | - | chr1_1:20582481-20582500 | Msa0013290:intron | 45.0% | |
| GGATAAGTGGGTATGGATTC+CGG | - | chr1_1:20582493-20582512 | Msa0013290:intron | 45.0% | |
| CTTCCTCTTGGAAGATGATG+TGG | - | chr1_1:20582568-20582587 | Msa0013290:intron | 45.0% | |
| !!! | AGGGGTTTTTTTCCTCGCTT+TGG | - | chr1_1:20582603-20582622 | Msa0013290:intron | 45.0% |
| TCCGGCTCCTTATAAAGTAG+TGG | - | chr1_1:20582631-20582650 | Msa0013290:intron | 45.0% | |
| GCCACTACTTTATAAGGAGC+CGG | + | chr1_1:20582635-20582654 | None:intergenic | 45.0% | |
| !! | GAGAGCGCCACTACTTTATA+AGG | + | chr1_1:20582641-20582660 | None:intergenic | 45.0% |
| ATAAAGTAGTGGCGCTCTCT+TGG | - | chr1_1:20582642-20582661 | Msa0013290:intron | 45.0% | |
| ACACACAGTAAAGACGCACT+CGG | + | chr1_1:20582728-20582747 | None:intergenic | 45.0% | |
| !! | GTCTCCTCTTTAATTTGGCG+TGG | - | chr1_1:20582799-20582818 | Msa0013290:intron | 45.0% |
| CGTGGAATCCTAAATTGGCT+TGG | - | chr1_1:20582817-20582836 | Msa0013290:intron | 45.0% | |
| CAACAAAGAGAAGGAAGTGG+AGG | - | chr1_1:20582990-20583009 | Msa0013290:intron | 45.0% | |
| !! | TCCTCTTTTATGAGCGGACT+TGG | - | chr1_1:20583079-20583098 | Msa0013290:intron | 45.0% |
| TCCAAGTCCGCTCATAAAAG+AGG | + | chr1_1:20583083-20583102 | None:intergenic | 45.0% | |
| AAAAAAACGGCCACAGGAAG+AGG | + | chr1_1:20583269-20583288 | None:intergenic | 45.0% | |
| CGAAAAACCAGCAGCAATTC+AGG | + | chr1_1:20583306-20583325 | None:intergenic | 45.0% | |
| !! | GTTTTTCGAACAGCAGGCAA+GGG | - | chr1_1:20583318-20583337 | Msa0013290:intron | 45.0% |
| !! | TTTTTCGAACAGCAGGCAAG+GGG | - | chr1_1:20583319-20583338 | Msa0013290:intron | 45.0% |
| CGATGTACCTAAAGGTGATG+TGG | - | chr1_1:20583888-20583907 | Msa0013290:intron | 45.0% | |
| TCACAAGAACTCAGATTCGG+CGG | + | chr1_1:20584670-20584689 | None:intergenic | 45.0% | |
| TCTCAGCATGCAATGTCCTA+AGG | + | chr1_1:20584694-20584713 | None:intergenic | 45.0% | |
| TAATTGTTTGCACGCTTGCG+AGG | - | chr1_1:20584791-20584810 | Msa0013290:intron | 45.0% | |
| AATTGTTTGCACGCTTGCGA+GGG | - | chr1_1:20584792-20584811 | Msa0013290:intron | 45.0% | |
| CGATTTCGCTGAGATTTCCA+TGG | - | chr1_1:20584897-20584916 | Msa0013290:intron | 45.0% | |
| ATTTGCTTCAGCGAACCAAC+CGG | + | chr1_1:20584937-20584956 | None:intergenic | 45.0% | |
| TCTTTGTCTCTCATGTCGAC+AGG | + | chr1_1:20585040-20585059 | None:intergenic | 45.0% | |
| ! | TTCGGCGGGTGAATGTTTTT+CGG | - | chr1_1:20585090-20585109 | Msa0013290:intron | 45.0% |
| GGTGAGGGGAAAAAAGAACA+TGG | + | chr1_1:20585381-20585400 | None:intergenic | 45.0% | |
| CGGTGGATATAATAGGTGAG+GGG | + | chr1_1:20585395-20585414 | None:intergenic | 45.0% | |
| CTCGGTGGATATAATAGGTG+AGG | + | chr1_1:20585397-20585416 | None:intergenic | 45.0% | |
| CTCACCTATTATATCCACCG+AGG | - | chr1_1:20585395-20585414 | Msa0013290:intron | 45.0% | |
| ! | ACATAGGGTTTTCACATCGG+TGG | + | chr1_1:20585463-20585482 | None:intergenic | 45.0% |
| ! | CTTTTGGCCTAGCTCGTTTA+GGG | + | chr1_1:20586256-20586275 | None:intergenic | 45.0% |
| ! | TCTTTTGGCCTAGCTCGTTT+AGG | + | chr1_1:20586257-20586276 | None:intergenic | 45.0% |
| AACAAAGGAAGAAGGGTGGA+AGG | - | chr1_1:20586352-20586371 | Msa0013290:intron | 45.0% | |
| TGGAACATACCCAAACTCGA+CGG | - | chr1_1:20586598-20586617 | Msa0013290:intron | 45.0% | |
| CGTATTCTTCCGTCGAGTTT+GGG | + | chr1_1:20586610-20586629 | None:intergenic | 45.0% | |
| !! | CTTGCCCTTCTTGACTTGTT+GGG | - | chr1_1:20586630-20586649 | Msa0013290:intron | 45.0% |
| GTTGCCCAACAAGTCAAGAA+GGG | + | chr1_1:20586637-20586656 | None:intergenic | 45.0% | |
| AGTTGCCCAACAAGTCAAGA+AGG | + | chr1_1:20586638-20586657 | None:intergenic | 45.0% | |
| CTATGTTACAATGTGGACGG+AGG | + | chr1_1:20586811-20586830 | None:intergenic | 45.0% | |
| CTCCGTCCACATTGTAACAT+AGG | - | chr1_1:20586809-20586828 | Msa0013290:intron | 45.0% | |
| !! | GATGTTAAAGGTGTTGGGAG+GGG | - | chr1_1:20586838-20586857 | Msa0013290:intron | 45.0% |
| TTGTCATGGGTCGCATAATG+TGG | + | chr1_1:20586913-20586932 | None:intergenic | 45.0% | |
| TTCAGTCGATGACCATACAG+CGG | - | chr1_1:20587293-20587312 | Msa0013290:intron | 45.0% | |
| TGTGGAATGAACGGAATGAC+AGG | + | chr1_1:20588083-20588102 | None:intergenic | 45.0% | |
| !! | GATTTGGCTTTCGTGTGTTC+AGG | + | chr1_1:20588109-20588128 | None:intergenic | 45.0% |
| CACACGAAAGCCAAATCAAG+TGG | - | chr1_1:20588112-20588131 | Msa0013290:intron | 45.0% | |
| ! | GCCACAAGGCACCAAAAATT+GGG | - | chr1_1:20588243-20588262 | Msa0013290:intron | 45.0% |
| CTGTGGAATTATTCCTGTGG+AGG | + | chr1_1:20588329-20588348 | None:intergenic | 45.0% | |
| TCTGTCACCACTCATGCAAA+AGG | - | chr1_1:20588390-20588409 | Msa0013290:intron | 45.0% | |
| ATTCATGGATGCCACATGGA+AGG | + | chr1_1:20588495-20588514 | None:intergenic | 45.0% | |
| TTGGATTCATGGATGCCACA+TGG | + | chr1_1:20588499-20588518 | None:intergenic | 45.0% | |
| ! | CCATGGTAGAGGTATGGATT+GGG | - | chr1_1:20580125-20580144 | Msa0013290:CDS | 45.0% |
| !! | GAGGTATGGATTGGGAAACT+AGG | - | chr1_1:20588760-20588779 | Msa0013290:intron | 45.0% |
| CTGACCAAGAAAGCCAAAGA+TGG | - | chr1_1:20588802-20588821 | Msa0013290:intron | 45.0% | |
| GTACACTAGACGTGAGAGTT+AGG | + | chr1_1:20589444-20589463 | None:intergenic | 45.0% | |
| GCAGTTTCCAGGTAGTGTTA+AGG | + | chr1_1:20589495-20589514 | None:intergenic | 45.0% | |
| CTACCTGGAAACTGCATACT+AGG | - | chr1_1:20589500-20589519 | Msa0013290:intron | 45.0% | |
| TCACCTAGTATGCAGTTTCC+AGG | + | chr1_1:20589506-20589525 | None:intergenic | 45.0% | |
| ! | TAATGGCTTGATGGTTGGAG+TGG | - | chr1_1:20589922-20589941 | Msa0013290:intron | 45.0% |
| ! | GAAGGCTGACTCAATTGGTA+AGG | + | chr1_1:20590203-20590222 | None:intergenic | 45.0% |
| TCTATTAGCCAACTCCTCAG+GGG | + | chr1_1:20590309-20590328 | None:intergenic | 45.0% | |
| CTCTATTAGCCAACTCCTCA+GGG | + | chr1_1:20590310-20590329 | None:intergenic | 45.0% | |
| ACTCTATTAGCCAACTCCTC+AGG | + | chr1_1:20590311-20590330 | None:intergenic | 45.0% | |
| GTGAGAACTAATTGTGGCAG+AGG | - | chr1_1:20590329-20590348 | Msa0013290:intron | 45.0% | |
| CTCCTTTACCCATACCTTGA+GGG | + | chr1_1:20590426-20590445 | None:intergenic | 45.0% | |
| TCTCCTTTACCCATACCTTG+AGG | + | chr1_1:20590427-20590446 | None:intergenic | 45.0% | |
| GGAGACCGTTCAAAGAACAA+TGG | - | chr1_1:20590442-20590461 | Msa0013290:intron | 45.0% | |
| GTGCCAACGAACATGAAGAA+AGG | - | chr1_1:20590782-20590801 | Msa0013290:intron | 45.0% | |
| GAACATGAAGAAAGGCAAGC+CGG | - | chr1_1:20590790-20590809 | Msa0013290:intron | 45.0% | |
| ! | GTATCTTAGTGAAAGCGTGG+AGG | - | chr1_1:20590899-20590918 | Msa0013290:intron | 45.0% |
| AAATAAGAGGGGAAGAAGGG+TGG | - | chr1_1:20591036-20591055 | Msa0013290:intron | 45.0% | |
| AAAGTGGGTGATACTCCAGA+AGG | - | chr1_1:20591059-20591078 | Msa0013290:intron | 45.0% | |
| CTCCAGAAGGATTGTATGCT+TGG | - | chr1_1:20591072-20591091 | Msa0013290:intron | 45.0% | |
| AGTGAGAAAAATGTCGGCCA+TGG | - | chr1_1:20592390-20592409 | Msa0013290:intron | 45.0% | |
| AAAAATGTCGGCCATGGTAG+AGG | - | chr1_1:20592396-20592415 | Msa0013290:intron | 45.0% | |
| ACCAATCCATACCTCTACCA+TGG | + | chr1_1:20580128-20580147 | None:intergenic | 45.0% | |
| AGTTGGAAGGGAAGCTCAAA+AGG | - | chr1_1:20592513-20592532 | Msa0013290:intron | 45.0% | |
| !!! | AAATTTTTTTTTATTATTAG+TGG | + | chr1_1:20585719-20585738 | None:intergenic | 5.0% |
| !!! | TTATTTCTTTTAATAAAAAA+TGG | + | chr1_1:20587094-20587113 | None:intergenic | 5.0% |
| !!! | TCAATAATAATATATTTTTT+GGG | + | chr1_1:20587365-20587384 | None:intergenic | 5.0% |
| !!! | TTCAATAATAATATATTTTT+TGG | + | chr1_1:20587366-20587385 | None:intergenic | 5.0% |
| !! | AAAATATATTATTATTGAAT+TGG | - | chr1_1:20587367-20587386 | Msa0013290:intron | 5.0% |
| !!! | AAAATTGAATAATTTTTTTA+AGG | - | chr1_1:20587803-20587822 | Msa0013290:intron | 5.0% |
| !! | CATAAAAAATTATAATTTAT+GGG | - | chr1_1:20587832-20587851 | Msa0013290:intron | 5.0% |
| !! | TTAATATATGTTTAATTATT+AGG | - | chr1_1:20588945-20588964 | Msa0013290:intron | 5.0% |
| !!! | AGATATATATTTTTTTTTTT+TGG | - | chr1_1:20589249-20589268 | Msa0013290:intron | 5.0% |
| TGTCAGCCATGGTAGAGGTA+TGG | - | chr1_1:20580119-20580138 | Msa0013290:CDS | 50.0% | |
| ! | GCCATGGTAGAGGTATGGAT+TGG | - | chr1_1:20580124-20580143 | Msa0013290:CDS | 50.0% |
| !! | CGTACAACCCTGTTGATAGC+TGG | - | chr1_1:20580784-20580803 | Msa0013290:intron | 50.0% |
| !! | CAACCCTGTTGATAGCTGGA+AGG | - | chr1_1:20580788-20580807 | Msa0013290:intron | 50.0% |
| TGGCAAATGCCGAAATCGCA+TGG | - | chr1_1:20580889-20580908 | Msa0013290:intron | 50.0% | |
| AAATGCCGAAATCGCATGGC+CGG | - | chr1_1:20580893-20580912 | Msa0013290:intron | 50.0% | |
| GAGTTCTCGGGTTCGAATCT+AGG | + | chr1_1:20580928-20580947 | None:intergenic | 50.0% | |
| ! | GGCATGCATGTAGTTTGTGG+TGG | + | chr1_1:20581902-20581921 | None:intergenic | 50.0% |
| TGTTCACCAATAGGGTGTGG+AGG | - | chr1_1:20582219-20582238 | Msa0013290:intron | 50.0% | |
| TGAAAAGGAAGCTAGGGTGG+GGG | - | chr1_1:20582340-20582359 | Msa0013290:intron | 50.0% | |
| GTGGTTGTGTTCCAAAGAGG+GGG | - | chr1_1:20582365-20582384 | Msa0013290:intron | 50.0% | |
| TGGTTGTGTTCCAAAGAGGG+GGG | - | chr1_1:20582366-20582385 | Msa0013290:intron | 50.0% | |
| GGCGTGTGTGGAATACAACA+TGG | - | chr1_1:20582387-20582406 | Msa0013290:intron | 50.0% | |
| ! | CTTGATGGCTATGTTGGAGG+AGG | - | chr1_1:20582451-20582470 | Msa0013290:intron | 50.0% |
| GTGAGGAGGATAAGTGGGTA+TGG | - | chr1_1:20582486-20582505 | Msa0013290:intron | 50.0% | |
| TAAGTGGGTATGGATTCCGG+AGG | - | chr1_1:20582496-20582515 | Msa0013290:intron | 50.0% | |
| CTCCCACATCATCTTCCAAG+AGG | + | chr1_1:20582574-20582593 | None:intergenic | 50.0% | |
| !! | TTCCTCGCTTTGGAAGAGTC+CGG | - | chr1_1:20582613-20582632 | Msa0013290:intron | 50.0% |
| CACACAGTAAAGACGCACTC+GGG | + | chr1_1:20582727-20582746 | None:intergenic | 50.0% | |
| GAAGGAAGTGGAGGAGTTAG+TGG | - | chr1_1:20582999-20583018 | Msa0013290:intron | 50.0% | |
| TACTAGCCCTGAATTGCTGC+TGG | - | chr1_1:20583296-20583315 | Msa0013290:intron | 50.0% | |
| !!! | CTGCTGGTTTTTCGAACAGC+AGG | - | chr1_1:20583312-20583331 | Msa0013290:intron | 50.0% |
| !! | GGTTTTTCGAACAGCAGGCA+AGG | - | chr1_1:20583317-20583336 | Msa0013290:intron | 50.0% |
| GTTCCACCCGATGTACCTAA+AGG | - | chr1_1:20583880-20583899 | Msa0013290:intron | 50.0% | |
| TCACCTTTAGGTACATCGGG+TGG | + | chr1_1:20583886-20583905 | None:intergenic | 50.0% | |
| ! | GGGGATTTCACATCGGTTGT+GGG | + | chr1_1:20583980-20583999 | None:intergenic | 50.0% |
| CGGTGACAATGTCTAGTGTC+AGG | + | chr1_1:20584263-20584282 | None:intergenic | 50.0% | |
| AACTCAGCGCGTTTCAGACA+TGG | - | chr1_1:20584320-20584339 | Msa0013290:CDS | 50.0% | |
| ACTCAGCGCGTTTCAGACAT+GGG | - | chr1_1:20584321-20584340 | Msa0013290:CDS | 50.0% | |
| CACAAGAACTCAGATTCGGC+GGG | + | chr1_1:20584669-20584688 | None:intergenic | 50.0% | |
| ! | CATGGGTTGTCTTGAATCGC+CGG | - | chr1_1:20584915-20584934 | Msa0013290:intron | 50.0% |
| ! | GTCGACAGGTTCTGATTCTC+TGG | + | chr1_1:20585026-20585045 | None:intergenic | 50.0% |
| GTAAAGAGCTTACACCTCGG+TGG | + | chr1_1:20585412-20585431 | None:intergenic | 50.0% | |
| AAAGGAAGAAGGGTGGAAGG+TGG | - | chr1_1:20586355-20586374 | Msa0013290:intron | 50.0% | |
| AAGGAAGAAGGGTGGAAGGT+GGG | - | chr1_1:20586356-20586375 | Msa0013290:intron | 50.0% | |
| GCGTATTCTTCCGTCGAGTT+TGG | + | chr1_1:20586611-20586630 | None:intergenic | 50.0% | |
| !! | GCTTGCCCTTCTTGACTTGT+TGG | - | chr1_1:20586629-20586648 | Msa0013290:intron | 50.0% |
| CTTGTAACATGAACGGGGAG+TGG | + | chr1_1:20586873-20586892 | None:intergenic | 50.0% | |
| CATGGGTCGCATAATGTGGA+TGG | + | chr1_1:20586909-20586928 | None:intergenic | 50.0% | |
| TCAGTCGATGACCATACAGC+GGG | - | chr1_1:20587294-20587313 | Msa0013290:intron | 50.0% | |
| !!! | TTTTGGTGCCTTGTGGCCAT+TGG | + | chr1_1:20588240-20588259 | None:intergenic | 50.0% |
| ! | GGCCACAAGGCACCAAAAAT+TGG | - | chr1_1:20588242-20588261 | Msa0013290:intron | 50.0% |
| !!! | GCCCAATTTTTGGTGCCTTG+TGG | + | chr1_1:20588247-20588266 | None:intergenic | 50.0% |
| ! | GGTTGTGTGTCACTGGTTGT+GGG | + | chr1_1:20588303-20588322 | None:intergenic | 50.0% |
| GAATTATTCCTGTGGAGGCG+CGG | + | chr1_1:20588324-20588343 | None:intergenic | 50.0% | |
| TGTCAGCCATGGTAGAGGTA+TGG | - | chr1_1:20580119-20580138 | Msa0013290:CDS | 50.0% | |
| ! | GCCATGGTAGAGGTATGGAT+TGG | - | chr1_1:20580124-20580143 | Msa0013290:CDS | 50.0% |
| CCCAATCCATACCTCTACCA+TGG | + | chr1_1:20588755-20588774 | None:intergenic | 50.0% | |
| TCTGAGGGCTCATCAGAAAC+AGG | - | chr1_1:20590065-20590084 | Msa0013290:intron | 50.0% | |
| CTGAGGGCTCATCAGAAACA+GGG | - | chr1_1:20590066-20590085 | Msa0013290:intron | 50.0% | |
| TCGTTGTATAAAGCCCCCTG+AGG | - | chr1_1:20590292-20590311 | Msa0013290:intron | 50.0% | |
| TATAAAGCCCCCTGAGGAGT+TGG | - | chr1_1:20590298-20590317 | Msa0013290:intron | 50.0% | |
| CTATTAGCCAACTCCTCAGG+GGG | + | chr1_1:20590308-20590327 | None:intergenic | 50.0% | |
| GTCCCTCAAGGTATGGGTAA+AGG | - | chr1_1:20590421-20590440 | Msa0013290:intron | 50.0% | |
| !! | CTTAAGTTGGCATGGGACCT+TGG | + | chr1_1:20590584-20590603 | None:intergenic | 50.0% |
| ! | GCCATGGTAGAGGTATGGAT+TGG | - | chr1_1:20580124-20580143 | Msa0013290:CDS | 50.0% |
| TGGAAGGGAAGCTCAAAAGG+AGG | - | chr1_1:20592516-20592535 | Msa0013290:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr1_1:20592886-20592905 | None:intergenic | 50.0% | |
| CGAATCTAGGTCACGACGTC+CGG | + | chr1_1:20580915-20580934 | None:intergenic | 55.0% | |
| !! | GAGGAGGCACCCGTTTATGT+GGG | - | chr1_1:20582409-20582428 | Msa0013290:intron | 55.0% |
| GTATGGATTCCGGAGGAGGA+TGG | - | chr1_1:20582503-20582522 | Msa0013290:intron | 55.0% | |
| CGGGTCAAGGATATGGCGAA+TGG | + | chr1_1:20582708-20582727 | None:intergenic | 55.0% | |
| ACGCACTCGGGTCAAGGATA+TGG | + | chr1_1:20582715-20582734 | None:intergenic | 55.0% | |
| GTAAAGACGCACTCGGGTCA+AGG | + | chr1_1:20582721-20582740 | None:intergenic | 55.0% | |
| CAACCTGCACTAGCAGCAGA+GGG | + | chr1_1:20583184-20583203 | None:intergenic | 55.0% | |
| ACAACCTGCACTAGCAGCAG+AGG | + | chr1_1:20583185-20583204 | None:intergenic | 55.0% | |
| ! | GGTCTGTTAGCCTCTTCCTG+TGG | - | chr1_1:20583256-20583275 | Msa0013290:intron | 55.0% |
| GGTTGTGGGACATGTCGAAG+TGG | + | chr1_1:20583966-20583985 | None:intergenic | 55.0% | |
| ! | GGGGGATTTCACATCGGTTG+TGG | + | chr1_1:20583981-20584000 | None:intergenic | 55.0% |
| CTCAGCGCGTTTCAGACATG+GGG | - | chr1_1:20584322-20584341 | Msa0013290:CDS | 55.0% | |
| ! | CTCAGATTCGGCGGGAGTTT+TGG | + | chr1_1:20584661-20584680 | None:intergenic | 55.0% |
| CGGCGATTCAAGACAACCCA+TGG | + | chr1_1:20584917-20584936 | None:intergenic | 55.0% | |
| GGTTGTCTTGAATCGCCGGT+TGG | - | chr1_1:20584919-20584938 | Msa0013290:intron | 55.0% | |
| TACAGCAAGGCTCAGTTCGG+CGG | - | chr1_1:20585075-20585094 | Msa0013290:intron | 55.0% | |
| GTAACATGAACGGGGAGTGG+AGG | + | chr1_1:20586870-20586889 | None:intergenic | 55.0% | |
| GGGTCGCATAATGTGGATGG+AGG | + | chr1_1:20586906-20586925 | None:intergenic | 55.0% | |
| ! | AGGGGCGTAGCCCTTCATAT+GGG | - | chr1_1:20587321-20587340 | Msa0013290:intron | 55.0% |
| GCGTAGCCCTTCATATGGGA+GGG | - | chr1_1:20587325-20587344 | Msa0013290:intron | 55.0% | |
| CGTAGCCCTTCATATGGGAG+GGG | - | chr1_1:20587326-20587345 | Msa0013290:intron | 55.0% | |
| GGCTACCCCTCCCATATGAA+GGG | + | chr1_1:20587334-20587353 | None:intergenic | 55.0% | |
| TGGCTACCCCTCCCATATGA+AGG | + | chr1_1:20587335-20587354 | None:intergenic | 55.0% | |
| TCATATGGGAGGGGTAGCCA+AGG | - | chr1_1:20587335-20587354 | Msa0013290:intron | 55.0% | |
| !! | TTTTCTGCTAGCTTCGCCGC+TGG | - | chr1_1:20587931-20587950 | Msa0013290:intron | 55.0% |
| ! | CGGTTGTGTGTCACTGGTTG+TGG | + | chr1_1:20588304-20588323 | None:intergenic | 55.0% |
| ! | TGGCTTGATGGTTGGAGTGG+TGG | - | chr1_1:20589925-20589944 | Msa0013290:intron | 55.0% |
| ! | GGCTTGATGGTTGGAGTGGT+GGG | - | chr1_1:20589926-20589945 | Msa0013290:intron | 55.0% |
| ! | GCTTGATGGTTGGAGTGGTG+GGG | - | chr1_1:20589927-20589946 | Msa0013290:intron | 55.0% |
| ! | CGTTGGCACCCATCGACTAA+TGG | + | chr1_1:20590771-20590790 | None:intergenic | 55.0% |
| AGGGGAAGAAGGGTGGAAAG+TGG | - | chr1_1:20591043-20591062 | Msa0013290:intron | 55.0% | |
| GGGGAAGAAGGGTGGAAAGT+GGG | - | chr1_1:20591044-20591063 | Msa0013290:intron | 55.0% | |
| TGTCGGCCATGGTAGAGGTA+TGG | - | chr1_1:20592401-20592420 | Msa0013290:intron | 55.0% | |
| GACGTCCGGCCATGCGATTT+CGG | + | chr1_1:20580901-20580920 | None:intergenic | 60.0% | |
| !! | GGAGGAGGCACCCGTTTATG+TGG | - | chr1_1:20582408-20582427 | Msa0013290:intron | 60.0% |
| GTGGGTATGGATTCCGGAGG+AGG | - | chr1_1:20582499-20582518 | Msa0013290:intron | 60.0% | |
| AGCCGGACTCTTCCAAAGCG+AGG | + | chr1_1:20582618-20582637 | None:intergenic | 60.0% | |
| GTTCCCTCTGCTGCTAGTGC+AGG | - | chr1_1:20583178-20583197 | Msa0013290:intron | 60.0% | |
| ACAGCAAGGCTCAGTTCGGC+GGG | - | chr1_1:20585076-20585095 | Msa0013290:intron | 60.0% | |
| ! | ATGACCATACAGCGGGCTCC+AGG | - | chr1_1:20587301-20587320 | Msa0013290:intron | 60.0% |
| ! | TGACCATACAGCGGGCTCCA+GGG | - | chr1_1:20587302-20587321 | Msa0013290:intron | 60.0% |
| CATATGAAGGGCTACGCCCC+TGG | + | chr1_1:20587322-20587341 | None:intergenic | 60.0% | |
| ! | CAGGGGCGTAGCCCTTCATA+TGG | - | chr1_1:20587320-20587339 | Msa0013290:intron | 60.0% |
| GGCGTAGCCCTTCATATGGG+AGG | - | chr1_1:20587324-20587343 | Msa0013290:intron | 60.0% | |
| !! | GGCATGGCTCGGTGTTGAAG+GGG | + | chr1_1:20588213-20588232 | None:intergenic | 60.0% |
| !! | GGGCATGGCTCGGTGTTGAA+GGG | + | chr1_1:20588214-20588233 | None:intergenic | 60.0% |
| TGCCTTGTGGCCATTGGTGC+GGG | + | chr1_1:20588234-20588253 | None:intergenic | 60.0% | |
| GTGCCTTGTGGCCATTGGTG+CGG | + | chr1_1:20588235-20588254 | None:intergenic | 60.0% | |
| ! | GGTTGGAGTGGTGGGGAGAA+TGG | - | chr1_1:20589934-20589953 | Msa0013290:intron | 60.0% |
| GGAAGCTAGGGTGGGGGATG+TGG | - | chr1_1:20582346-20582365 | Msa0013290:intron | 65.0% | |
| ! | TCCAAAGAGGGGGGCGTGTG+TGG | - | chr1_1:20582375-20582394 | Msa0013290:intron | 65.0% |
| TCCACACACGCCCCCCTCTT+TGG | + | chr1_1:20582379-20582398 | None:intergenic | 65.0% | |
| ! | GACCATACAGCGGGCTCCAG+GGG | - | chr1_1:20587303-20587322 | Msa0013290:intron | 65.0% |
| ! | TCTGCTAGCTTCGCCGCTGG+CGG | - | chr1_1:20587934-20587953 | Msa0013290:intron | 65.0% |
| !! | CGGGCATGGCTCGGTGTTGA+AGG | + | chr1_1:20588215-20588234 | None:intergenic | 65.0% |
| CCATTGGTGCGGGCATGGCT+CGG | + | chr1_1:20588224-20588243 | None:intergenic | 65.0% | |
| TGTGGCCATTGGTGCGGGCA+TGG | + | chr1_1:20588229-20588248 | None:intergenic | 65.0% | |
| TGCCCGCACCAATGGCCACA+AGG | - | chr1_1:20588229-20588248 | Msa0013290:intron | 65.0% | |
| GAGGCGCGGTTGTGTGTCAC+TGG | + | chr1_1:20588310-20588329 | None:intergenic | 65.0% | |
| ACACACAACCGCGCCTCCAC+AGG | - | chr1_1:20588313-20588332 | Msa0013290:intron | 65.0% | |
| ! | CTGCTAGCTTCGCCGCTGGC+GGG | - | chr1_1:20587935-20587954 | Msa0013290:intron | 70.0% |
| ! | TTGGTGGTCGAGCCCGCCAG+CGG | + | chr1_1:20587950-20587969 | None:intergenic | 70.0% |
| CCGAGCCATGCCCGCACCAA+TGG | - | chr1_1:20588221-20588240 | Msa0013290:intron | 70.0% | |
| CGCCCCTGGAGCCCGCTGTA+TGG | + | chr1_1:20587308-20587327 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 20580118 | 20593019 | 20580118 | ID=Msa0013290;Name=Msa0013290 |
| chr1_1 | mRNA | 20580118 | 20593019 | 20580118 | ID=Msa0013290-mRNA-1;Parent=Msa0013290;Name=Msa0013290-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|0|0|4|0|188 |
| chr1_1 | exon | 20592837 | 20593019 | 20592837 | ID=Msa0013290-mRNA-1:exon:7368;Parent=Msa0013290-mRNA-1 |
| chr1_1 | exon | 20584201 | 20584374 | 20584201 | ID=Msa0013290-mRNA-1:exon:7367;Parent=Msa0013290-mRNA-1 |
| chr1_1 | exon | 20580551 | 20580719 | 20580551 | ID=Msa0013290-mRNA-1:exon:7366;Parent=Msa0013290-mRNA-1 |
| chr1_1 | exon | 20580118 | 20580158 | 20580118 | ID=Msa0013290-mRNA-1:exon:7365;Parent=Msa0013290-mRNA-1 |
| chr1_1 | CDS | 20592837 | 20593019 | 20592837 | ID=Msa0013290-mRNA-1:cds;Parent=Msa0013290-mRNA-1 |
| chr1_1 | CDS | 20584201 | 20584374 | 20584201 | ID=Msa0013290-mRNA-1:cds;Parent=Msa0013290-mRNA-1 |
| chr1_1 | CDS | 20580551 | 20580719 | 20580551 | ID=Msa0013290-mRNA-1:cds;Parent=Msa0013290-mRNA-1 |
| chr1_1 | CDS | 20580118 | 20580158 | 20580118 | ID=Msa0013290-mRNA-1:cds;Parent=Msa0013290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
