AlfalfaGEDB | Msa1412730

M. sativa cultivar zhongmu-4 / Msa1412730

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005543 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010556 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0036211 GO:0042578 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:0098727 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412730	sp\|Q8RWN7\|P2C32_ARATH	62.959	899	271	16	1	892	1	844	0.0	1081

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412730	A0A072VMB8	98.318	892	15	0	1	892	1	892	0.0	1825

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081270	Msa1412730	0.998941	8.591219e-283	-8.615850e-47
Msa0122530	Msa1412730	0.802466	5.537329e-49	-8.615850e-47
Msa0152850	Msa1412730	0.822324	2.518194e-53	-8.615850e-47
Msa0173800	Msa1412730	0.878829	2.045807e-69	-8.615850e-47
Msa0274720	Msa1412730	0.801886	7.286140e-49	-8.615850e-47
Msa0288010	Msa1412730	-0.815951	7.106914e-52	-8.615850e-47
Msa0304730	Msa1412730	0.804663	1.938551e-49	-8.615850e-47
Msa0315520	Msa1412730	0.801435	9.015523e-49	-8.615850e-47
Msa0517590	Msa1412730	0.805901	1.067032e-49	-8.615850e-47
Msa0527540	Msa1412730	0.813603	2.354534e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412730	MtrunA17_Chr1g0193691	98.318	892	15	0	1	892	1	892	0.0	1825
Msa1412730	MtrunA17_Chr4g0054811	58.769	325	119	4	573	892	462	776	2.30e-114	367
Msa1412730	MtrunA17_Chr4g0054811	38.636	396	135	17	1	358	1	326	8.77e-53	197
Msa1412730	MtrunA17_Chr4g0031521	52.522	337	133	4	555	890	392	702	5.27e-109	351
Msa1412730	MtrunA17_Chr4g0031521	38.108	370	157	11	1	347	1	321	1.43e-56	207
Msa1412730	MtrunA17_Chr7g0238501	45.902	305	104	3	586	890	310	553	2.89e-79	267
Msa1412730	MtrunA17_Chr7g0238501	26.394	269	158	7	98	355	66	305	9.07e-17	84.7
Msa1412730	MtrunA17_Chr4g0039061	45.902	305	106	5	587	891	245	490	2.30e-74	252
Msa1412730	MtrunA17_Chr4g0039061	45.238	84	44	1	286	367	175	258	6.48e-18	87.8
Msa1412730	MtrunA17_Chr4g0067301	35.932	295	138	2	589	883	244	487	4.39e-56	201

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412730	AT2G46920.3	62.959	899	271	16	1	892	1	844	0.0	1081
Msa1412730	AT2G46920.1	62.959	899	271	16	1	892	1	844	0.0	1081
Msa1412730	AT2G46920.2	62.959	899	271	16	1	892	1	844	0.0	1081
Msa1412730	AT2G46920.4	62.959	899	271	16	1	892	1	844	0.0	1081
Msa1412730	AT1G07630.1	53.824	340	126	6	555	890	348	660	3.73e-114	364
Msa1412730	AT1G07630.1	39.730	370	145	13	1	347	1	315	1.91e-62	224
Msa1412730	AT2G35350.1	50.131	383	168	8	517	892	414	780	9.17e-109	353
Msa1412730	AT2G35350.1	38.227	361	129	14	25	354	37	334	6.76e-47	180
Msa1412730	AT2G28890.1	55.960	302	110	3	589	890	374	652	8.76e-108	347
Msa1412730	AT2G28890.1	42.033	364	139	13	1	347	1	309	8.13e-64	228

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Find 273 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTCTTTACCTCAAA+GGG	0.430978	tig0023943:+53487	None:intergenic
AAACACAAGGGCAGCAGTAA+AGG	0.460107	tig0023943:+46984	None:intergenic
AAACCACCACTTCTATCCAA+TGG	0.584898	tig0023943:+52736	None:intergenic
AAACCTTGAGTGGTTCGTTT+AGG	0.394527	tig0023943:-53050	Msa1412730:CDS
AAATCCAGAACTTGCTATAA+TGG	0.219054	tig0023943:-51411	Msa1412730:CDS
AACAAGGGTGGTTGTTTATT+GGG	0.261849	tig0023943:-52330	Msa1412730:CDS
AACACACGCATAATCTGCAG+TGG	0.639874	tig0023943:-52402	Msa1412730:CDS
AACAGCTTCGTGCTCCTTGT+TGG	0.386048	tig0023943:+51718	None:intergenic
AACATTCTCTAAGCACTCCA+TGG	0.508300	tig0023943:-52557	Msa1412730:CDS
AACCAGAGTGCCATGTTTGC+TGG	0.458335	tig0023943:-52895	Msa1412730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTTTCTTTCTTCTTTCTT+GGG	+	tig0023943:46987-47006	None:intergenic	30.0%
TCTCTTTCTTTCTTCTTTCT+TGG	+	tig0023943:46988-47007	None:intergenic	30.0%
ATTGAGACATAAACACAAGT+AGG	+	tig0023943:47210-47229	None:intergenic	30.0%
GTTTATGTCTCAATGATTCA+AGG	-	tig0023943:47216-47235	Msa1412730:three_prime_UTR	30.0%
AAACACAAAAACCCATTTCA+AGG	+	tig0023943:47298-47317	None:intergenic	30.0%
AAAACACTCTTTACCTCAAA+GGG	+	tig0023943:47403-47422	None:intergenic	30.0%
AAAAACACTCTTTACCTCAA+AGG	+	tig0023943:47404-47423	None:intergenic	30.0%
ATGGTCAAGTGAGTAATAAT+GGG	-	tig0023943:47511-47530	Msa1412730:intron	30.0%
TGTTTATACTCAGCTTCATA+CGG	+	tig0023943:48469-48488	None:intergenic	30.0%
TTTCTAGACAAAGAATTGGA+AGG	-	tig0023943:48640-48659	Msa1412730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023943	gene	46983	53926	46983	ID=Msa1412730;Name=Msa1412730
tig0023943	mRNA	46983	53926	46983	ID=Msa1412730-mRNA-1;Parent=Msa1412730;Name=Msa1412730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=652\|1\|1\|1\|1\|1\|4\|253\|892
tig0023943	exon	46983	47351	46983	ID=Msa1412730-mRNA-1:exon:20760;Parent=Msa1412730-mRNA-1
tig0023943	exon	49004	49268	49004	ID=Msa1412730-mRNA-1:exon:20759;Parent=Msa1412730-mRNA-1
tig0023943	exon	50309	50422	50309	ID=Msa1412730-mRNA-1:exon:20758;Parent=Msa1412730-mRNA-1
tig0023943	exon	51091	53926	51091	ID=Msa1412730-mRNA-1:exon:20757;Parent=Msa1412730-mRNA-1
tig0023943	five_prime_UTR	53275	53926	53275	ID=Msa1412730-mRNA-1:five_prime_utr;Parent=Msa1412730-mRNA-1
tig0023943	CDS	51091	53274	51091	ID=Msa1412730-mRNA-1:cds;Parent=Msa1412730-mRNA-1
tig0023943	CDS	50309	50422	50309	ID=Msa1412730-mRNA-1:cds;Parent=Msa1412730-mRNA-1
tig0023943	CDS	49004	49268	49004	ID=Msa1412730-mRNA-1:cds;Parent=Msa1412730-mRNA-1
tig0023943	CDS	47236	47351	47236	ID=Msa1412730-mRNA-1:cds;Parent=Msa1412730-mRNA-1
tig0023943	three_prime_UTR	46983	47235	46983	ID=Msa1412730-mRNA-1:three_prime_utr;Parent=Msa1412730-mRNA-1

Gene Sequence

>Msa1412730

ATGGGTAACGGCACTTCTCGTGTTGTTGGTTGTTTAGTGCCATTCAATGGTAAAAATGGTGTTGATTTGGAGTTTTTAGAGCCATTAGATGAAGGTTTAGGACATTCTTTTTGTTATGTGAGACCAACTATGTTTGAATCTCCTGCTATTAGTCCATCGAATTCTGAGAGGTTTACCGTTGATTCAAGCACTCTTGATTCTGAAACCTTGAGTGGTTCGTTTAGGCATGATAGTATGGAGCATTCTAATTCTTCTGGTTTACACAAGCAGGGTAAGAATTTCCCTGAAACTACGTTTAAGACGATTTCAGGGGCTTCTGTTAGTGCCAATGTTTCCACAGCAAGGACAGGTGGCGGTAACCAGAGTGCCATGTTTGCTGGTGATTTCTTGGAACCTGCTGCTTCGTTTGAGGGAACTGCTTCGTTTGCTGCAATTCCTTTGCAGCCAGTTCCACGCGGTTCTGGACCTTTGAATGGTTTTATGTCTGGTCCTTTGGAGAGAGGCTTTGCCTCAGGTCCATTGGATAGAAGTGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGGGTTATGTCAGGTCCTCTTGATGACACTGATAAATCCAACTTTTCGGCACCACTTGCGCGTGGTCGTAGGAGGCCGCGTCTACAACATCTCATGAGAAGTGTTAGTGGACCGGTGAAGAACACGTTTTCTCGAACATTCTCTAAGCACTCCATGGGTGGAAGTTGGATGCAAAGGTTGTTCTTTCAACCGGTTACTCAGTTGGCATGGCCTTCCAGAGATACTAAGTGTAGGCCGGACATCTCTAGGAACTGTGGTATTGATGTTGTACCGTATGAAGCTGAGTATAAACACACGCATAATCTGCAGTGGGCTCAGGGAAAGGCCGGTGAAGATAGGGTTCATGTAGTTCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGACGGTTTTAGTGGACCAGATGCACCTGATTTTTTGATGAGCCATCTTTATAGATTTCTAGACAAAGAATTGGAAGGTTTACTTTGGGATTATGAAGATAATCCTGTAGATTCCCTTAAACCCGAAGTCCCTGAAACTTTAAAAGCTACCGTTGCTCCAGAATCCAGTCGGTCGGAAATGTCTGATACTCATACTAATTCTAATCAAGAATGTTTTGAAGCTTGTTCTGGTCCTGAATTAATCAAGGATCAATCATTTAACAATGAGATAGTTGAGGAAAAGGCTGAAGTTAATGTAAATGTTGAACACCAGTTATCTAATTGTGGAAGTAGCTTGTCTACTGTTTCTAATTCTGTTCAGCATGAAAAGTTGACTGGAAAAGGTAAAAGAAGTTTAAGGCTTTATGAGCTACTTCAAATGGAATCTTGGGATGATCAATGTAATGATTCCTCAGTTCCGATGGAGTCAATACTAGATGAGCATACAAGACCTTGCTCGTCTACTGTAAGAGAAGATGGCTCTAAACATCAGGATGAAGGCCCGTCTACATCAGGGGAAAATGGAAGCACTGGGTTTGGTTCAACCAACAAGGAGCACGAAGCTGTTTTTCCTGCTTCTGTATCAAGGCAGAATTCAAAAAAGTCATTTATCGGTGCAAAAATTAAAAAAATGTACAGGAAGCCAAAGTCCTTGTGTAAGAAACTCTTTCCTTGGAGTTATGATTGGCATAGGGAAGAAAGTAGTGTTGATGAGAAAATATTAGAAGCCTCTGGACCTATTAGAAAATGCAGGTCTGGAGTAGATCATAACGCAGTTTTAACAGCAATGGCTCGAGCTCTTGAAAGAACAGAAGAGGCATACATGGAAACGGCGGAGAATAATCTGGACAAAAATCCAGAACTTGCTATAATGGGGTCATGTGTTCTAGTGATGTTGATGAAGGATCAAGATGTTTATGTCATGAATCTGGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGATCAAACGATCGCCATCCTAATTCAAGCTCTGTCAAGGATGACATGAGGCATAGAAATAGATCTAGAGAGTCATTAGTACGCATGGAGCTCGATAGGATTTCAGAGGAGTCTCCAATTCACAACCATAACAATCATGTTATCAAGATGAATAAAAACCGCGAGATATCATTTTGCAAATTAAAAATGAGGGCTCTGCAGCTTTCTACAGACCACAGCACCAGTATTGAAGAGGAAGTTTCAAGAATAAGAGCAGAACACCCTGATGATAGTCAGGCCATATTGAATGATCGAGTGAAAGGAAATTTAAAAGTTACCAGAGCATTTGGCGCCGGGTTCTTGAAGAGGCCGTCTTTTAACGAAGCTCTACTCGAGGTGTTTCAAGTTAAATATATCGGCTCTGCTCCTTACCTAAGTTGCACTCCTTCTGTACTTCACCATCGACTTTCTTCAAGTGACCGATTCTTGGTACTCTCCTCTGATGGGCTTTACCAATATTTCAGCAATGAAGAAGTGGTTGCCCATGTCACATGGTTCATGGAAAATGTTCCAGAAGGCGATCCTGCACAATACCTTATTGCAGAGCTTCTCTTCTGCGCTGCTAAAAAGAATGGAATGGATTTTCATGAACTGCTTGATATTCCTCATGGAGATCGGCGTAAATATCACGATGATGTATCTGTCATGGTCGTTTCTTTGGAGGGAAGGATTTGGAGATCATCGGGATAA

Protein sequence

>Msa1412730

MGNGTSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPTMFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEHSNSSGLHKQGKNFPETTFKTISGASVSANVSTARTGGGNQSAMFAGDFLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRSGGFMSGPIEKGVMSGPLDDTDKSNFSAPLARGRRRPRLQHLMRSVSGPVKNTFSRTFSKHSMGGSWMQRLFFQPVTQLAWPSRDTKCRPDISRNCGIDVVPYEAEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFLDKELEGLLWDYEDNPVDSLKPEVPETLKATVAPESSRSEMSDTHTNSNQECFEACSGPELIKDQSFNNEIVEEKAEVNVNVEHQLSNCGSSLSTVSNSVQHEKLTGKGKRSLRLYELLQMESWDDQCNDSSVPMESILDEHTRPCSSTVREDGSKHQDEGPSTSGENGSTGFGSTNKEHEAVFPASVSRQNSKKSFIGAKIKKMYRKPKSLCKKLFPWSYDWHREESSVDEKILEASGPIRKCRSGVDHNAVLTAMARALERTEEAYMETAENNLDKNPELAIMGSCVLVMLMKDQDVYVMNLGDSRVILAQERSNDRHPNSSSVKDDMRHRNRSRESLVRMELDRISEESPIHNHNNHVIKMNKNREISFCKLKMRALQLSTDHSTSIEEEVSRIRAEHPDDSQAILNDRVKGNLKVTRAFGAGFLKRPSFNEALLEVFQVKYIGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG*