Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414180 | sp|Q9M325|IPCS1_ARATH | 73.968 | 315 | 72 | 3 | 1 | 315 | 1 | 305 | 5.50e-176 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414180 | A0A072UH47 | 100.000 | 315 | 0 | 0 | 1 | 315 | 1 | 315 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1414180 | -0.800909 | 1.155199e-48 | -8.615850e-47 |
| Msa0030310 | Msa1414180 | -0.807001 | 6.254063e-50 | -8.615850e-47 |
| Msa0032840 | Msa1414180 | 0.806662 | 7.377476e-50 | -8.615850e-47 |
| Msa1359080 | Msa1414180 | 0.823427 | 1.393582e-53 | -8.615850e-47 |
| Msa1367940 | Msa1414180 | -0.802990 | 4.315587e-49 | -8.615850e-47 |
| Msa1391360 | Msa1414180 | 0.814812 | 1.273218e-51 | -8.615850e-47 |
| Msa0625530 | Msa1414180 | 0.804938 | 1.698838e-49 | -8.615850e-47 |
| Msa0642650 | Msa1414180 | -0.814485 | 1.504112e-51 | -8.615850e-47 |
| Msa0703720 | Msa1414180 | -0.802966 | 4.364879e-49 | -8.615850e-47 |
| Msa0140220 | Msa1414180 | -0.810408 | 1.170174e-50 | -8.615850e-47 |
| Msa0141830 | Msa1414180 | -0.801760 | 7.733171e-49 | -8.615850e-47 |
| Msa0163550 | Msa1414180 | -0.802315 | 5.946367e-49 | -8.615850e-47 |
| Msa0228340 | Msa1414180 | 0.808518 | 2.977003e-50 | -8.615850e-47 |
| Msa0230550 | Msa1414180 | 0.810882 | 9.238718e-51 | -8.615850e-47 |
| Msa0417630 | Msa1414180 | -0.807530 | 4.833072e-50 | -8.615850e-47 |
| Msa0264350 | Msa1414180 | -0.801768 | 7.705602e-49 | -8.615850e-47 |
| Msa0302450 | Msa1414180 | -0.801249 | 9.843711e-49 | -8.615850e-47 |
| Msa1220450 | Msa1414180 | 0.834019 | 3.818171e-56 | -8.615850e-47 |
| Msa1220460 | Msa1414180 | 0.829997 | 3.762606e-55 | -8.615850e-47 |
| Msa1220480 | Msa1414180 | 0.827471 | 1.536385e-54 | -8.615850e-47 |
| Msa0486570 | Msa1414180 | -0.816191 | 6.279931e-52 | -8.615850e-47 |
| Msa0500930 | Msa1414180 | 0.800675 | 1.289741e-48 | -8.615850e-47 |
| Msa0524120 | Msa1414180 | -0.801328 | 9.482365e-49 | -8.615850e-47 |
| Msa0546380 | Msa1414180 | -0.810127 | 1.345277e-50 | -8.615850e-47 |
| Msa0577940 | Msa1414180 | 0.809469 | 1.863071e-50 | -8.615850e-47 |
| Msa0591160 | Msa1414180 | 0.967298 | 4.375285e-127 | -8.615850e-47 |
| Msa0925160 | Msa1414180 | -0.810516 | 1.108989e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414180 | MtrunA17_Chr4g0008901 | 100.000 | 315 | 0 | 0 | 1 | 315 | 1 | 315 | 0.0 | 653 |
| Msa1414180 | MtrunA17_Chr7g0240951 | 78.481 | 316 | 65 | 2 | 1 | 315 | 36 | 349 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414180 | AT3G54020.1 | 73.968 | 315 | 72 | 3 | 1 | 315 | 1 | 305 | 5.59e-177 | 491 |
| Msa1414180 | AT2G37940.1 | 74.603 | 315 | 70 | 4 | 1 | 315 | 1 | 305 | 1.46e-175 | 488 |
| Msa1414180 | AT2G37940.2 | 74.603 | 315 | 70 | 4 | 1 | 315 | 1 | 305 | 1.46e-175 | 488 |
| Msa1414180 | AT2G29525.3 | 69.366 | 284 | 86 | 1 | 1 | 283 | 1 | 284 | 8.49e-148 | 417 |
| Msa1414180 | AT2G29525.1 | 69.366 | 284 | 86 | 1 | 1 | 283 | 1 | 284 | 8.49e-148 | 417 |
| Msa1414180 | AT2G29525.4 | 69.366 | 284 | 86 | 1 | 1 | 283 | 1 | 284 | 8.49e-148 | 417 |
| Msa1414180 | AT2G29525.2 | 72.764 | 246 | 67 | 0 | 1 | 246 | 1 | 246 | 1.65e-134 | 382 |
| Msa1414180 | AT2G29525.5 | 69.444 | 144 | 44 | 0 | 1 | 144 | 1 | 144 | 6.20e-70 | 215 |
Find 98 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCACCCGAGCTGCTTTA+TGG | 0.168539 | tig0024098:+25636 | None:intergenic |
| ATTACATAATGCTGAATATT+AGG | 0.195901 | tig0024098:+24459 | None:intergenic |
| AGATCTACACAGTTCTTATT+TGG | 0.214205 | tig0024098:-26517 | Msa1414180:CDS |
| CAAAGTGTCCAATGTGAAAA+AGG | 0.223372 | tig0024098:+29575 | None:intergenic |
| GTTCCGGCCATCTTTGTCTT+TGG | 0.260597 | tig0024098:+24988 | None:intergenic |
| TTGCAGGTACACTGTTAATT+TGG | 0.284927 | tig0024098:-25459 | Msa1414180:intron |
| TCACCTACACTGTACAAAAT+TGG | 0.288251 | tig0024098:-24730 | Msa1414180:three_prime_UTR |
| CTTTATCTATGCACTGTTCA+TGG | 0.298978 | tig0024098:+24755 | None:intergenic |
| TTTAAGGTTTAGTTGATTAC+TGG | 0.298986 | tig0024098:-24361 | Msa1414180:three_prime_UTR |
| CTTTGTCTTTGGTGCTCAAT+GGG | 0.309227 | tig0024098:+24999 | None:intergenic |
| AGCTCCAACCTTCAATTAGA+AGG | 0.325872 | tig0024098:-24682 | Msa1414180:three_prime_UTR |
| TGTTGGATTCTTCCTTCTTC+CGG | 0.327738 | tig0024098:-27737 | Msa1414180:intron |
| GTACGTACATATCAGAAATA+TGG | 0.333783 | tig0024098:-25847 | Msa1414180:CDS |
| AATCCAACATCTTGAAGAAT+AGG | 0.335204 | tig0024098:+27751 | None:intergenic |
| TCAAGCTTCTTGCAGAGAAT+TGG | 0.336508 | tig0024098:-29094 | Msa1414180:CDS |
| TCTAGCTGGTCTTGTTTGTC+AGG | 0.341522 | tig0024098:-29063 | Msa1414180:intron |
| TTATTATTCTGCAGAATTAC+CGG | 0.343257 | tig0024098:-25053 | Msa1414180:intron |
| TCTTTGTCTTTGGTGCTCAA+TGG | 0.344617 | tig0024098:+24998 | None:intergenic |
| TGTAGTTCTCCTCTTTGTTC+CGG | 0.355270 | tig0024098:+24972 | None:intergenic |
| ACCTCACGGCAATGGTAGTT+TGG | 0.357521 | tig0024098:+26182 | None:intergenic |
| ATATGAAGATAGAAGTGAAC+AGG | 0.361540 | tig0024098:+27577 | None:intergenic |
| CTTTGGTGCTCAATGGGAGC+AGG | 0.366590 | tig0024098:+25005 | None:intergenic |
| GTTCCGCATGGCGTGTTATA+TGG | 0.369388 | tig0024098:-25919 | Msa1414180:CDS |
| CATGAACAGTGCATAGATAA+AGG | 0.380012 | tig0024098:-24754 | Msa1414180:exon |
| AAAACTTCAAGGAAACTATC+TGG | 0.380533 | tig0024098:+26032 | None:intergenic |
| GGCCCTATTCTTCAAGATGT+TGG | 0.381446 | tig0024098:-27754 | Msa1414180:CDS |
| ATCCAACATCTTGAAGAATA+GGG | 0.408007 | tig0024098:+27752 | None:intergenic |
| TATTCAGCATTATGTAATAT+AGG | 0.410517 | tig0024098:-24454 | Msa1414180:three_prime_UTR |
| CAACACAACCTTCTAATTGA+AGG | 0.411740 | tig0024098:+24674 | None:intergenic |
| TTGATGCTTCGGCAGGAACT+TGG | 0.414797 | tig0024098:-27627 | Msa1414180:intron |
| GTATCAGTGAAAGTTGAAAC+TGG | 0.418389 | tig0024098:-24630 | Msa1414180:three_prime_UTR |
| ATGAAAATAATGAACACTTC+GGG | 0.434463 | tig0024098:+27783 | None:intergenic |
| AAAGGGGCTTAATAGTCAAA+AGG | 0.436630 | tig0024098:+29593 | None:intergenic |
| GAGAACTACAAGCTATTGAA+TGG | 0.448279 | tig0024098:-24959 | Msa1414180:CDS |
| AGACAAAGATCTCAAATAAA+CGG | 0.449180 | tig0024098:-24819 | Msa1414180:CDS |
| ATCATCTCAATATTGATAAG+AGG | 0.456489 | tig0024098:+24537 | None:intergenic |
| CATTGGTCGTGAGGCTTCAA+AGG | 0.462934 | tig0024098:-29267 | Msa1414180:intron |
| TTGCTGCAGCTGCGATTGAC+CGG | 0.464627 | tig0024098:+25029 | None:intergenic |
| TATCTTCATATCCTTTGCCT+TGG | 0.467943 | tig0024098:-27565 | Msa1414180:intron |
| TTGAAGGCACATGCTGAAGC+TGG | 0.469066 | tig0024098:+24563 | None:intergenic |
| TACTCGATCCGCAGGGTCAC+CGG | 0.482276 | tig0024098:+24931 | None:intergenic |
| TTCACATTGGACACTTTGAT+CGG | 0.485537 | tig0024098:-29570 | Msa1414180:five_prime_UTR |
| CAGGTACACTGTTAATTTGG+TGG | 0.486152 | tig0024098:-25456 | Msa1414180:CDS |
| CTGGATAATTTAATGAATCA+TGG | 0.491000 | tig0024098:+24582 | None:intergenic |
| GAAAATTACGAACCGGAAGA+AGG | 0.491505 | tig0024098:+27725 | None:intergenic |
| TGTTCATGGAAGAGTCGTTA+TGG | 0.493513 | tig0024098:+24769 | None:intergenic |
| AAGCTATTGAATGGGAATTC+CGG | 0.495710 | tig0024098:-24950 | Msa1414180:CDS |
| TATTGATAAGAGGAATTTGA+AGG | 0.498411 | tig0024098:+24547 | None:intergenic |
| CCAGATCCATAAAGCAGCTC+GGG | 0.502477 | tig0024098:-25642 | Msa1414180:intron |
| TTGGGTATCCGAATCTGAAT+CGG | 0.502907 | tig0024098:+29492 | None:intergenic |
| TTCAAGGAAACTATCTGGAC+GGG | 0.504570 | tig0024098:+26037 | None:intergenic |
| ATTTGCCATACTCGATCCGC+AGG | 0.510093 | tig0024098:+24923 | None:intergenic |
| TGGTATGAACGTGGCGAGAA+CGG | 0.511715 | tig0024098:+29725 | None:intergenic |
| TTTCTGCTCTTGAATATGAA+AGG | 0.528016 | tig0024098:+26539 | None:intergenic |
| TCAAATAAACGGCAAGATCA+CGG | 0.528281 | tig0024098:-24808 | Msa1414180:CDS |
| AAGGGGCTTAATAGTCAAAA+GGG | 0.530119 | tig0024098:+29594 | None:intergenic |
| TATGAAAATAATGAACACTT+CGG | 0.533279 | tig0024098:+27782 | None:intergenic |
| TAAGAAAGGAAAGGAGTAGA+GGG | 0.534044 | tig0024098:+29749 | None:intergenic |
| AACGGCAAGATCACGGATGA+CGG | 0.534120 | tig0024098:-24801 | Msa1414180:CDS |
| TTCCATATGCAGTACATACA+TGG | 0.534449 | tig0024098:-27814 | Msa1414180:intron |
| TGCAATTGCAATGTTGTGAC+TGG | 0.534912 | tig0024098:+29705 | None:intergenic |
| AATTGGAAGTATCTTCTAGC+TGG | 0.540807 | tig0024098:-29077 | Msa1414180:CDS |
| AGTTAATCACGAAAACTTCA+AGG | 0.542211 | tig0024098:+26021 | None:intergenic |
| CGGCAATGGTAGTTTGGACC+AGG | 0.546032 | tig0024098:+26188 | None:intergenic |
| AGAACTACAAGCTATTGAAT+GGG | 0.546221 | tig0024098:-24958 | Msa1414180:CDS |
| ACATCTTGAAGAATAGGGCC+AGG | 0.549791 | tig0024098:+27757 | None:intergenic |
| ACCAGATCCATAAAGCAGCT+CGG | 0.553598 | tig0024098:-25643 | Msa1414180:intron |
| TTAAGAAAGGAAAGGAGTAG+AGG | 0.558367 | tig0024098:+29748 | None:intergenic |
| ACAACCTTCTAATTGAAGGT+TGG | 0.564029 | tig0024098:+24678 | None:intergenic |
| GCAATTTCTTACCAAGGCAA+AGG | 0.565542 | tig0024098:+27554 | None:intergenic |
| AGCATCTCGCAAACATTACA+CGG | 0.566819 | tig0024098:-25584 | Msa1414180:CDS |
| TTGAGCACCAAAGACAAAGA+TGG | 0.570634 | tig0024098:-24995 | Msa1414180:CDS |
| GCAGCTGCGATTGACCGGTC+CGG | 0.576129 | tig0024098:+25034 | None:intergenic |
| TTTGTTGACAAGAAATTACC+AGG | 0.576566 | tig0024098:-25428 | Msa1414180:intron |
| ATTTAATATGCAGTTCCGCA+TGG | 0.576820 | tig0024098:-25931 | Msa1414180:intron |
| TTTGGTGCTCAATGGGAGCA+GGG | 0.591416 | tig0024098:+25006 | None:intergenic |
| CGGTTGACGTAGTTGTCGCT+TGG | 0.593772 | tig0024098:-25564 | Msa1414180:intron |
| GTGGCGAGAACGGTTAAGAA+AGG | 0.594541 | tig0024098:+29735 | None:intergenic |
| CAAAGATGGCCGGAACAAAG+AGG | 0.595013 | tig0024098:-24981 | Msa1414180:CDS |
| ATCAGAAATATGGCACTCGA+AGG | 0.602949 | tig0024098:-25837 | Msa1414180:intron |
| CTTCAAGGAAACTATCTGGA+CGG | 0.604774 | tig0024098:+26036 | None:intergenic |
| AGGCATATAATGTAAAGAAG+AGG | 0.607539 | tig0024098:-24434 | Msa1414180:three_prime_UTR |
| GATCCATAAAGCAGCTCGGG+TGG | 0.617816 | tig0024098:-25639 | Msa1414180:CDS |
| TATGAAGATAGAAGTGAACA+GGG | 0.626652 | tig0024098:+27578 | None:intergenic |
| GCACCAAAGACAAAGATGGC+CGG | 0.628710 | tig0024098:-24991 | Msa1414180:CDS |
| AATCAAAAGACTCTGAATCA+CGG | 0.640459 | tig0024098:+25609 | None:intergenic |
| ATTCTGCAGAATTACCGGAC+CGG | 0.643880 | tig0024098:-25048 | Msa1414180:intron |
| ACTATCTGGACGGGGCAATG+TGG | 0.653488 | tig0024098:+26046 | None:intergenic |
| CAAATCATACCTCACGGCAA+TGG | 0.657286 | tig0024098:+26174 | None:intergenic |
| TGGGAATTCCGGTGACCCTG+CGG | 0.658595 | tig0024098:-24939 | Msa1414180:CDS |
| TCAAGGAAACTATCTGGACG+GGG | 0.668994 | tig0024098:+26038 | None:intergenic |
| CATCCATATAACACGCCATG+CGG | 0.672113 | tig0024098:+25916 | None:intergenic |
| TATGCAGTACATACATGGTG+TGG | 0.674913 | tig0024098:-27809 | Msa1414180:intron |
| CATGGCGTGTTATATGGATG+CGG | 0.685691 | tig0024098:-25913 | Msa1414180:CDS |
| TTTGCCATACTCGATCCGCA+GGG | 0.703388 | tig0024098:+24924 | None:intergenic |
| GAGAACGGTTAAGAAAGGAA+AGG | 0.713131 | tig0024098:+29740 | None:intergenic |
| TCCAAACTACCATTGCCGTG+AGG | 0.747588 | tig0024098:-26183 | Msa1414180:intron |
| TGTTGTGACTGGTATGAACG+TGG | 0.757853 | tig0024098:+29716 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATAATTTTTATAATTAG+AGG | - | tig0024098:25343-25362 | Msa1414180:intron | 10.0% |
| !! | AAAAATATACTTCATAAAAT+TGG | + | tig0024098:25960-25979 | None:intergenic | 10.0% |
| !! | CAAATAAATAATTAAACTAA+TGG | + | tig0024098:26033-26052 | None:intergenic | 10.0% |
| !!! | TTTTATTTTAAAATTGAATG+TGG | + | tig0024098:26999-27018 | None:intergenic | 10.0% |
| !!! | AATAAATTTAGAACATAAAA+TGG | + | tig0024098:29046-29065 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTGTAGTTA+TGG | - | tig0024098:24966-24985 | Msa1414180:CDS | 15.0% |
| !!! | ATTTTTATAATTAGAGGTTT+TGG | - | tig0024098:25349-25368 | Msa1414180:intron | 15.0% |
| !!! | TTTTTATAATTAGAGGTTTT+GGG | - | tig0024098:25350-25369 | Msa1414180:intron | 15.0% |
| !!! | TTCTATTTAACACATTTTAT+AGG | + | tig0024098:26438-26457 | None:intergenic | 15.0% |
| !! | ATAAAATGTGTTAAATAGAA+TGG | - | tig0024098:26438-26457 | Msa1414180:intron | 15.0% |
| !! | AAATAAGAAAGGATAATTAT+GGG | + | tig0024098:27277-27296 | None:intergenic | 15.0% |
| !! | AAAATAAGAAAGGATAATTA+TGG | + | tig0024098:27278-27297 | None:intergenic | 15.0% |
| !! | TAATCCAAATGAAATAAATA+AGG | + | tig0024098:27413-27432 | None:intergenic | 15.0% |
| !!! | AATATTAAGTTTTTCAGATT+AGG | - | tig0024098:28332-28351 | Msa1414180:intron | 15.0% |
| !! | ATATCTATACCATAATATAA+AGG | + | tig0024098:28992-29011 | None:intergenic | 15.0% |
| !!! | AAAGTTTCATTTTTGCAAAT+TGG | - | tig0024098:24684-24703 | Msa1414180:three_prime_UTR | 20.0% |
| !!! | AAGTTTCATTTTTGCAAATT+GGG | - | tig0024098:24685-24704 | Msa1414180:three_prime_UTR | 20.0% |
| !!! | TTGTTACTTTTGAACTAATA+TGG | - | tig0024098:24753-24772 | Msa1414180:exon | 20.0% |
| !!! | AATAACATGTCTTTTTACAT+TGG | - | tig0024098:24830-24849 | Msa1414180:intron | 20.0% |
| !!! | TTTTCTGTTAGTTATTCATT+TGG | - | tig0024098:24887-24906 | Msa1414180:intron | 20.0% |
| !! | TTTCTGTTAGTTATTCATTT+GGG | - | tig0024098:24888-24907 | Msa1414180:intron | 20.0% |
| !!! | TGTTTGTTTTGATTTATGTT+TGG | - | tig0024098:24936-24955 | Msa1414180:CDS | 20.0% |
| !!! | TTTATGTTTTTGTTTTGATG+TGG | - | tig0024098:25161-25180 | Msa1414180:intron | 20.0% |
| !! | AATAGAGTTAAAATTCTTGA+GGG | - | tig0024098:25396-25415 | Msa1414180:intron | 20.0% |
| !!! | TGTTTTAATGAGAGAATTAA+AGG | - | tig0024098:25656-25675 | Msa1414180:intron | 20.0% |
| !!! | TTTAAGATGGAACTAATAAT+TGG | + | tig0024098:25776-25795 | None:intergenic | 20.0% |
| !!! | ATTTTTTATGGAAAATAGTC+AGG | - | tig0024098:25894-25913 | Msa1414180:CDS | 20.0% |
| !! | TATGAAAATAATGAACACTT+CGG | + | tig0024098:26335-26354 | None:intergenic | 20.0% |
| !! | ATCAAGATTAGAAATTACAA+AGG | + | tig0024098:26472-26491 | None:intergenic | 20.0% |
| !! | TACAGATAATATATGAAAAC+CGG | + | tig0024098:26590-26609 | None:intergenic | 20.0% |
| !! | GTGCATATATTATCTATAAA+AGG | + | tig0024098:26809-26828 | None:intergenic | 20.0% |
| !! | TTTATAGATAATATATGCAC+AGG | - | tig0024098:26809-26828 | Msa1414180:intron | 20.0% |
| !! | TTATAGATAATATATGCACA+GGG | - | tig0024098:26810-26829 | Msa1414180:intron | 20.0% |
| !! | TTAAAATAAAATTGCATCTG+TGG | - | tig0024098:27008-27027 | Msa1414180:intron | 20.0% |
| !! | AAAAAATAAAAAATGCCACA+TGG | - | tig0024098:27224-27243 | Msa1414180:intron | 20.0% |
| !! | AAAAATAAAAAATGCCACAT+GGG | - | tig0024098:27225-27244 | Msa1414180:intron | 20.0% |
| !!! | AATTATCCTTTCTTATTTTG+TGG | - | tig0024098:27279-27298 | Msa1414180:intron | 20.0% |
| !!! | ATTATCCTTTCTTATTTTGT+GGG | - | tig0024098:27280-27299 | Msa1414180:intron | 20.0% |
| !! | AAATAATCATTGTCCAAAAT+CGG | + | tig0024098:27332-27351 | None:intergenic | 20.0% |
| !!! | ATTATTTACTCTCTGTTTTT+TGG | - | tig0024098:27345-27364 | Msa1414180:intron | 20.0% |
| !!! | AACACCTTATTTATTTCATT+TGG | - | tig0024098:27406-27425 | Msa1414180:intron | 20.0% |
| !! | TCAAAAGAGATTTAGAAAAT+AGG | + | tig0024098:27439-27458 | None:intergenic | 20.0% |
| !! | ACATATCAAAGAATTTATTG+TGG | + | tig0024098:27533-27552 | None:intergenic | 20.0% |
| !!! | AGCATATTTCTAATTACATA+TGG | - | tig0024098:27834-27853 | Msa1414180:intron | 20.0% |
| !! | GTTAGTATACATTATTGTAT+TGG | - | tig0024098:28116-28135 | Msa1414180:intron | 20.0% |
| !! | GATGAAAAGATTATTCAAAA+GGG | + | tig0024098:28621-28640 | None:intergenic | 20.0% |
| !! | AGATGAAAAGATTATTCAAA+AGG | + | tig0024098:28622-28641 | None:intergenic | 20.0% |
| !! | TAACAATGTTCAAACAAAAT+TGG | - | tig0024098:28842-28861 | Msa1414180:intron | 20.0% |
| !! | CAATATATACCATAATCATA+GGG | + | tig0024098:28885-28904 | None:intergenic | 20.0% |
| !! | TCAATATATACCATAATCAT+AGG | + | tig0024098:28886-28905 | None:intergenic | 20.0% |
| !! | TGGTATATATTGAAGAAAAA+AGG | - | tig0024098:28893-28912 | Msa1414180:intron | 20.0% |
| !! | GGTATATATTGAAGAAAAAA+GGG | - | tig0024098:28894-28913 | Msa1414180:intron | 20.0% |
| !! | CATAAAAATGTATGACAAAT+TGG | - | tig0024098:28938-28957 | Msa1414180:intron | 20.0% |
| !! | GATATTAATATATGCTATTG+TGG | - | tig0024098:29007-29026 | Msa1414180:intron | 20.0% |
| !! | AATAAAGCCAAAAGAAAAAA+GGG | + | tig0024098:29611-29630 | None:intergenic | 20.0% |
| !! | AAATAAAGCCAAAAGAAAAA+AGG | + | tig0024098:29612-29631 | None:intergenic | 20.0% |
| !! | ATTACATAATGCTGAATATT+AGG | + | tig0024098:29658-29677 | None:intergenic | 20.0% |
| !! | TATTCAGCATTATGTAATAT+AGG | - | tig0024098:29660-29679 | Msa1414180:five_prime_UTR | 20.0% |
| !! | AGAAAAAGATCTGATTTTTG+AGG | + | tig0024098:24592-24611 | None:intergenic | 25.0% |
| !!! | TTATTTTTCCGATTCAGATT+CGG | - | tig0024098:24614-24633 | Msa1414180:three_prime_UTR | 25.0% |
| !! | TGAATTTTACTGTTGTGTTT+TGG | - | tig0024098:25107-25126 | Msa1414180:intron | 25.0% |
| !!! | ATGTTTTTGGAAATGGTTTT+TGG | - | tig0024098:25190-25209 | Msa1414180:intron | 25.0% |
| !!! | TGTTTTTGGAAATGGTTTTT+GGG | - | tig0024098:25191-25210 | Msa1414180:intron | 25.0% |
| ! | CAATAGAGTTAAAATTCTTG+AGG | - | tig0024098:25395-25414 | Msa1414180:intron | 25.0% |
| !! | TTTTGTAGAATGCAAGTTAA+GGG | + | tig0024098:25513-25532 | None:intergenic | 25.0% |
| !! | TTTTTGTAGAATGCAAGTTA+AGG | + | tig0024098:25514-25533 | None:intergenic | 25.0% |
| ! | AGTAATGTTCGTATTTAAGA+TGG | + | tig0024098:25789-25808 | None:intergenic | 25.0% |
| ! | ACATTACTCTCAATTATATG+TGG | - | tig0024098:25801-25820 | Msa1414180:intron | 25.0% |
| !!! | AATATGCTGCTGATTTTTTA+TGG | - | tig0024098:25882-25901 | Msa1414180:CDS | 25.0% |
| ! | ACTCGATATCTAAATCTAAA+CGG | - | tig0024098:26276-26295 | Msa1414180:intron | 25.0% |
| ! | ATGAAAATAATGAACACTTC+GGG | + | tig0024098:26334-26353 | None:intergenic | 25.0% |
| ! | AATGTGTTAAATAGAATGGT+AGG | - | tig0024098:26442-26461 | Msa1414180:intron | 25.0% |
| ! | AATTTCTAATCTTGATGCTT+CGG | - | tig0024098:26476-26495 | Msa1414180:intron | 25.0% |
| ! | ACAGATAATATATGAAAACC+GGG | + | tig0024098:26589-26608 | None:intergenic | 25.0% |
| ! | AGAAAATAACCTATCACAAT+AGG | + | tig0024098:26654-26673 | None:intergenic | 25.0% |
| ! | TATAGATAATATATGCACAG+GGG | - | tig0024098:26811-26830 | Msa1414180:intron | 25.0% |
| ! | AAAATAAAAAATGCCACATG+GGG | - | tig0024098:27226-27245 | Msa1414180:intron | 25.0% |
| !! | TATTTCTTTTCCTTCTTTTG+AGG | - | tig0024098:27504-27523 | Msa1414180:intron | 25.0% |
| !! | GTTTGTACTAACTTCTTTTA+AGG | + | tig0024098:27715-27734 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTTTGATTCCTTT+TGG | - | tig0024098:28140-28159 | Msa1414180:intron | 25.0% |
| ! | TTAATATTCCTATTCAGTTG+AGG | + | tig0024098:28320-28339 | None:intergenic | 25.0% |
| ! | ATTCTGATTTATTGTGAATG+TGG | - | tig0024098:28441-28460 | Msa1414180:intron | 25.0% |
| !! | TTTCAATATTTGTGTCGTTA+AGG | - | tig0024098:28805-28824 | Msa1414180:intron | 25.0% |
| !! | TTCAATATTTGTGTCGTTAA+GGG | - | tig0024098:28806-28825 | Msa1414180:intron | 25.0% |
| ! | AATGTTCAAACAAAATTGGT+AGG | - | tig0024098:28846-28865 | Msa1414180:intron | 25.0% |
| ! | TGAAGAAAAAAGGGTTATTA+AGG | - | tig0024098:28903-28922 | Msa1414180:intron | 25.0% |
| !!! | TAGTTTCCAGTAGTTATTTT+TGG | - | tig0024098:28961-28980 | Msa1414180:intron | 25.0% |
| ! | TTGGAGTTACCTTTATATTA+TGG | - | tig0024098:28980-28999 | Msa1414180:intron | 25.0% |
| ! | TTATTATTCTGCAGAATTAC+CGG | - | tig0024098:29061-29080 | Msa1414180:intron | 25.0% |
| ! | ACATAGTGTAAAAGGAATAA+GGG | + | tig0024098:29230-29249 | None:intergenic | 25.0% |
| ! | AGACAAAGATCTCAAATAAA+CGG | - | tig0024098:29295-29314 | Msa1414180:exon | 25.0% |
| ! | CTGGATAATTTAATGAATCA+TGG | + | tig0024098:29535-29554 | None:intergenic | 25.0% |
| ! | TATTGATAAGAGGAATTTGA+AGG | + | tig0024098:29570-29589 | None:intergenic | 25.0% |
| ! | ATCATCTCAATATTGATAAG+AGG | + | tig0024098:29580-29599 | None:intergenic | 25.0% |
| !! | CACTATTTTCTTTCCAAAAA+GGG | - | tig0024098:29727-29746 | Msa1414180:five_prime_UTR | 25.0% |
| !! | ACTATTTTCTTTCCAAAAAG+GGG | - | tig0024098:29728-29747 | Msa1414180:five_prime_UTR | 25.0% |
| !! | TTTAAGGTTTAGTTGATTAC+TGG | - | tig0024098:29753-29772 | Msa1414180:five_prime_UTR | 25.0% |
| ! | AAAGTGTCCAATGTGAAAAA+GGG | + | tig0024098:24541-24560 | None:intergenic | 30.0% |
| !! | TTTTCCCCTCTATGTTTTTT+TGG | - | tig0024098:25077-25096 | Msa1414180:intron | 30.0% |
| ATCACCAAAAAAACATAGAG+GGG | + | tig0024098:25084-25103 | None:intergenic | 30.0% | |
| CATCACCAAAAAAACATAGA+GGG | + | tig0024098:25085-25104 | None:intergenic | 30.0% | |
| TTTCCATTCATCACACAAAA+GGG | + | tig0024098:25136-25155 | None:intergenic | 30.0% | |
| !!! | GAGATGAATGTTTTTGGAAA+TGG | - | tig0024098:25183-25202 | Msa1414180:intron | 30.0% |
| !! | GTTTTTGGAAATGGTTTTTG+GGG | - | tig0024098:25192-25211 | Msa1414180:intron | 30.0% |
| ! | TAACTTGTAGAGTGAAATCA+TGG | - | tig0024098:25261-25280 | Msa1414180:intron | 30.0% |
| AACTTGTAGAGTGAAATCAT+GGG | - | tig0024098:25262-25281 | Msa1414180:intron | 30.0% | |
| !!! | TTATTCATCCAAGCGTTTTT+TGG | + | tig0024098:25330-25349 | None:intergenic | 30.0% |
| CAATACATGATACTATCTTG+TGG | - | tig0024098:25565-25584 | Msa1414180:CDS | 30.0% | |
| GGAAGTTGTAAATACTTTGA+AGG | - | tig0024098:25677-25696 | Msa1414180:intron | 30.0% | |
| TTGTTAAAGTCTTCCAATGA+CGG | + | tig0024098:25864-25883 | None:intergenic | 30.0% | |
| TTGAATGCAATCACATCTTT+CGG | + | tig0024098:26148-26167 | None:intergenic | 30.0% | |
| GATAATATCAATGTCTTGTC+CGG | - | tig0024098:26205-26224 | Msa1414180:CDS | 30.0% | |
| ! | GTTCATTATTTTCATAAGCC+TGG | - | tig0024098:26339-26358 | Msa1414180:intron | 30.0% |
| ATCCAACATCTTGAAGAATA+GGG | + | tig0024098:26365-26384 | None:intergenic | 30.0% | |
| AATCCAACATCTTGAAGAAT+AGG | + | tig0024098:26366-26385 | None:intergenic | 30.0% | |
| TATGAAGATAGAAGTGAACA+GGG | + | tig0024098:26539-26558 | None:intergenic | 30.0% | |
| ATATGAAGATAGAAGTGAAC+AGG | + | tig0024098:26540-26559 | None:intergenic | 30.0% | |
| ACAACAACAACATGGAAATT+AGG | + | tig0024098:26704-26723 | None:intergenic | 30.0% | |
| ! | TTGTTATTGTGAGAGATAAG+AGG | - | tig0024098:26852-26871 | Msa1414180:intron | 30.0% |
| CTAAACCATAATAGATCCTA+TGG | + | tig0024098:26890-26909 | None:intergenic | 30.0% | |
| AGAGAAAGGGAATGATAAAA+GGG | - | tig0024098:27192-27211 | Msa1414180:intron | 30.0% | |
| ATCAACCCACAAAATAAGAA+AGG | + | tig0024098:27288-27307 | None:intergenic | 30.0% | |
| ! | TAAATCTCTTTTGACCAGTA+TGG | - | tig0024098:27445-27464 | Msa1414180:intron | 30.0% |
| TTTCTGCTCTTGAATATGAA+AGG | + | tig0024098:27578-27597 | None:intergenic | 30.0% | |
| AGATCTACACAGTTCTTATT+TGG | - | tig0024098:27597-27616 | Msa1414180:CDS | 30.0% | |
| !! | CATCATGTCCTTTTTATTTC+AGG | - | tig0024098:27658-27677 | Msa1414180:intron | 30.0% |
| TAAAAATAAGTCAGGCCAAA+CGG | + | tig0024098:27686-27705 | None:intergenic | 30.0% | |
| ! | TTTTATTCTACACAACTACC+TGG | - | tig0024098:27908-27927 | Msa1414180:intron | 30.0% |
| AAAACTTCAAGGAAACTATC+TGG | + | tig0024098:28085-28104 | None:intergenic | 30.0% | |
| AGTTAATCACGAAAACTTCA+AGG | + | tig0024098:28096-28115 | None:intergenic | 30.0% | |
| GTACGTACATATCAGAAATA+TGG | - | tig0024098:28267-28286 | Msa1414180:intron | 30.0% | |
| CATATAAACCTCAACTGAAT+AGG | - | tig0024098:28309-28328 | Msa1414180:intron | 30.0% | |
| AAACATGCCAAAATATGTGA+TGG | + | tig0024098:28413-28432 | None:intergenic | 30.0% | |
| AATCAAAAGACTCTGAATCA+CGG | + | tig0024098:28508-28527 | None:intergenic | 30.0% | |
| TTTGTTGACAAGAAATTACC+AGG | - | tig0024098:28686-28705 | Msa1414180:intron | 30.0% | |
| ! | ACAAAATTGGTAGGTAGTTT+TGG | - | tig0024098:28855-28874 | Msa1414180:intron | 30.0% |
| GTAACTCCAAAAATAACTAC+TGG | + | tig0024098:28970-28989 | None:intergenic | 30.0% | |
| AGAACTACAAGCTATTGAAT+GGG | - | tig0024098:29156-29175 | Msa1414180:intron | 30.0% | |
| TGTAAAAGGAATAAGGGAAA+GGG | + | tig0024098:29224-29243 | None:intergenic | 30.0% | |
| GACATAGTGTAAAAGGAATA+AGG | + | tig0024098:29231-29250 | None:intergenic | 30.0% | |
| TTAGACAGACATAGTGTAAA+AGG | + | tig0024098:29238-29257 | None:intergenic | 30.0% | |
| AGGCATATAATGTAAAGAAG+AGG | - | tig0024098:29680-29699 | Msa1414180:five_prime_UTR | 30.0% | |
| ! | GCACTATTTTCTTTCCAAAA+AGG | - | tig0024098:29726-29745 | Msa1414180:five_prime_UTR | 30.0% |
| ! | TTTCCAAAAAGGGGTTTTTA+AGG | - | tig0024098:29737-29756 | Msa1414180:five_prime_UTR | 30.0% |
| ! | AAACCTTAAAAACCCCTTTT+TGG | + | tig0024098:29743-29762 | None:intergenic | 30.0% |
| TAAGAAAGGAAAGGAGTAGA+GGG | + | tig0024098:24368-24387 | None:intergenic | 35.0% | |
| TTAAGAAAGGAAAGGAGTAG+AGG | + | tig0024098:24369-24388 | None:intergenic | 35.0% | |
| AAGGGGCTTAATAGTCAAAA+GGG | + | tig0024098:24523-24542 | None:intergenic | 35.0% | |
| AAAGGGGCTTAATAGTCAAA+AGG | + | tig0024098:24524-24543 | None:intergenic | 35.0% | |
| !! | ATTAAGCCCCTTTTTCACAT+TGG | - | tig0024098:24531-24550 | Msa1414180:three_prime_UTR | 35.0% |
| AAGTGTCCAATGTGAAAAAG+GGG | + | tig0024098:24540-24559 | None:intergenic | 35.0% | |
| ! | CAAAGTGTCCAATGTGAAAA+AGG | + | tig0024098:24542-24561 | None:intergenic | 35.0% |
| TTCACATTGGACACTTTGAT+CGG | - | tig0024098:24544-24563 | Msa1414180:three_prime_UTR | 35.0% | |
| CCAGAAAGAAAAACGCAATT+GGG | + | tig0024098:24643-24662 | None:intergenic | 35.0% | |
| ! | CCAATTGCGTTTTTCTTTCT+GGG | - | tig0024098:24641-24660 | Msa1414180:three_prime_UTR | 35.0% |
| !! | AATTGGAAGTATCTTCTAGC+TGG | - | tig0024098:25037-25056 | Msa1414180:CDS | 35.0% |
| CCATCACCAAAAAAACATAG+AGG | + | tig0024098:25086-25105 | None:intergenic | 35.0% | |
| !!! | CCTCTATGTTTTTTTGGTGA+TGG | - | tig0024098:25083-25102 | Msa1414180:intron | 35.0% |
| ! | TTTCCCTTTTGTGTGATGAA+TGG | - | tig0024098:25130-25149 | Msa1414180:intron | 35.0% |
| CTTTCCATTCATCACACAAA+AGG | + | tig0024098:25137-25156 | None:intergenic | 35.0% | |
| ! | CTTTTGTGTGATGAATGGAA+AGG | - | tig0024098:25135-25154 | Msa1414180:intron | 35.0% |
| ! | GATGTGGAGATGAATGTTTT+TGG | - | tig0024098:25177-25196 | Msa1414180:intron | 35.0% |
| !!! | AAATGGTTTTTGGGGTTGTT+GGG | - | tig0024098:25200-25219 | Msa1414180:intron | 35.0% |
| TGGGAAATTAGTGACATGTT+TGG | - | tig0024098:25219-25238 | Msa1414180:intron | 35.0% | |
| !!! | ATCCAAGCGTTTTTTGGATA+CGG | + | tig0024098:25324-25343 | None:intergenic | 35.0% |
| ! | TGTTCTTCATCAAGTTGTTC+AGG | - | tig0024098:25541-25560 | Msa1414180:intron | 35.0% |
| TTCGATCATGTCAAGTATCA+GGG | - | tig0024098:25613-25632 | Msa1414180:CDS | 35.0% | |
| !! | AAGTATCAGGGTTGGTTTAT+TGG | - | tig0024098:25625-25644 | Msa1414180:CDS | 35.0% |
| AGTTGACATTAGATGATGCA+CGG | - | tig0024098:25734-25753 | Msa1414180:intron | 35.0% | |
| TCTCAATTATATGTGGACCT+TGG | - | tig0024098:25808-25827 | Msa1414180:intron | 35.0% | |
| CTCAATTATATGTGGACCTT+GGG | - | tig0024098:25809-25828 | Msa1414180:intron | 35.0% | |
| TCAATTATATGTGGACCTTG+GGG | - | tig0024098:25810-25829 | Msa1414180:intron | 35.0% | |
| ATGGAAAATAGTCAGGACAA+AGG | - | tig0024098:25901-25920 | Msa1414180:CDS | 35.0% | |
| CTAGCACAAATACATCTCAT+TGG | - | tig0024098:26084-26103 | Msa1414180:intron | 35.0% | |
| !! | ATGAAGTACTGACACAAACA+CGG | + | tig0024098:26234-26253 | None:intergenic | 35.0% |
| TTCCATATGCAGTACATACA+TGG | - | tig0024098:26300-26319 | Msa1414180:intron | 35.0% | |
| AGGGAATGAAAATTACGAAC+CGG | + | tig0024098:26399-26418 | None:intergenic | 35.0% | |
| AGGTGAGAGTGAAAAAGAAA+GGG | + | tig0024098:26418-26437 | None:intergenic | 35.0% | |
| TAGGTGAGAGTGAAAAAGAA+AGG | + | tig0024098:26419-26438 | None:intergenic | 35.0% | |
| TATCTTCATATCCTTTGCCT+TGG | - | tig0024098:26549-26568 | Msa1414180:CDS | 35.0% | |
| ! | AGTTTAGAACTTTGACGTCA+AGG | + | tig0024098:26779-26798 | None:intergenic | 35.0% |
| AACCACCATAGGATCTATTA+TGG | - | tig0024098:26882-26901 | Msa1414180:intron | 35.0% | |
| AACCATAATAGATCCTATGG+TGG | + | tig0024098:26887-26906 | None:intergenic | 35.0% | |
| TTAAAATTGAATGTGGCGCA+TGG | + | tig0024098:26992-27011 | None:intergenic | 35.0% | |
| GAGAGAAAGGGAATGATAAA+AGG | - | tig0024098:27191-27210 | Msa1414180:intron | 35.0% | |
| !!! | TGGGTTGATGTTTTTTCCAA+AGG | - | tig0024098:27299-27318 | Msa1414180:intron | 35.0% |
| CAAAATCGGTATTCAACCTT+TGG | + | tig0024098:27318-27337 | None:intergenic | 35.0% | |
| !!! | CAAAGGTTGAATACCGATTT+TGG | - | tig0024098:27316-27335 | Msa1414180:intron | 35.0% |
| TCACAAAAACTAAGCCATAC+TGG | + | tig0024098:27462-27481 | None:intergenic | 35.0% | |
| TTTGATATGTACCTTTGCAG+TGG | - | tig0024098:27543-27562 | Msa1414180:intron | 35.0% | |
| AAACGGAGCCTGAAATAAAA+AGG | + | tig0024098:27669-27688 | None:intergenic | 35.0% | |
| !! | TTTTTATTTCAGGCTCCGTT+TGG | - | tig0024098:27668-27687 | Msa1414180:intron | 35.0% |
| GGAGACGTTAAAAATAAGTC+AGG | + | tig0024098:27694-27713 | None:intergenic | 35.0% | |
| CAATTTATTGACCATACACG+AGG | + | tig0024098:27813-27832 | None:intergenic | 35.0% | |
| ACCAAACAAATCATACCTCA+CGG | + | tig0024098:27949-27968 | None:intergenic | 35.0% | |
| ATAATGCATGCTGTGTTGTA+AGG | - | tig0024098:27971-27990 | Msa1414180:intron | 35.0% | |
| TAATGCATGCTGTGTTGTAA+GGG | - | tig0024098:27972-27991 | Msa1414180:intron | 35.0% | |
| ATAAGTGACAAATCGCCAAA+AGG | + | tig0024098:28158-28177 | None:intergenic | 35.0% | |
| ATTTAATATGCAGTTCCGCA+TGG | - | tig0024098:28183-28202 | Msa1414180:intron | 35.0% | |
| TTATTCAAAAGGGACACGAA+CGG | + | tig0024098:28611-28630 | None:intergenic | 35.0% | |
| !! | TCTTTTTGTGCATGATTTGC+AGG | - | tig0024098:28639-28658 | Msa1414180:intron | 35.0% |
| TTGCAGGTACACTGTTAATT+TGG | - | tig0024098:28655-28674 | Msa1414180:intron | 35.0% | |
| ! | TTTGGAGTTCCCTATGATTA+TGG | - | tig0024098:28873-28892 | Msa1414180:intron | 35.0% |
| ATGCTATTGTGGTTTACTTG+AGG | - | tig0024098:29018-29037 | Msa1414180:intron | 35.0% | |
| GAGAACTACAAGCTATTGAA+TGG | - | tig0024098:29155-29174 | Msa1414180:intron | 35.0% | |
| AAGCTATTGAATGGGAATTC+CGG | - | tig0024098:29164-29183 | Msa1414180:intron | 35.0% | |
| GTGTAAAAGGAATAAGGGAA+AGG | + | tig0024098:29225-29244 | None:intergenic | 35.0% | |
| TCAAATAAACGGCAAGATCA+CGG | - | tig0024098:29306-29325 | Msa1414180:five_prime_UTR | 35.0% | |
| CTTTATCTATGCACTGTTCA+TGG | + | tig0024098:29362-29381 | None:intergenic | 35.0% | |
| CATGAACAGTGCATAGATAA+AGG | - | tig0024098:29360-29379 | Msa1414180:five_prime_UTR | 35.0% | |
| TCACCTACACTGTACAAAAT+TGG | - | tig0024098:29384-29403 | Msa1414180:five_prime_UTR | 35.0% | |
| ! | GATCCAATTTTGTACAGTGT+AGG | + | tig0024098:29390-29409 | None:intergenic | 35.0% |
| ACAACCTTCTAATTGAAGGT+TGG | + | tig0024098:29439-29458 | None:intergenic | 35.0% | |
| CAACACAACCTTCTAATTGA+AGG | + | tig0024098:29443-29462 | None:intergenic | 35.0% | |
| GTATCAGTGAAAGTTGAAAC+TGG | - | tig0024098:29484-29503 | Msa1414180:five_prime_UTR | 35.0% | |
| !!! | TGCATAGCCCTTTTTTCTTT+TGG | - | tig0024098:29601-29620 | Msa1414180:five_prime_UTR | 35.0% |
| GAGAACGGTTAAGAAAGGAA+AGG | + | tig0024098:24377-24396 | None:intergenic | 40.0% | |
| TGCAATTGCAATGTTGTGAC+TGG | + | tig0024098:24412-24431 | None:intergenic | 40.0% | |
| TTGGGTATCCGAATCTGAAT+CGG | + | tig0024098:24625-24644 | None:intergenic | 40.0% | |
| ! | CCCAATTGCGTTTTTCTTTC+TGG | - | tig0024098:24640-24659 | Msa1414180:three_prime_UTR | 40.0% |
| CCCAGAAAGAAAAACGCAAT+TGG | + | tig0024098:24644-24663 | None:intergenic | 40.0% | |
| ! | GTCTTTTTACATTGGTCGTG+AGG | - | tig0024098:24838-24857 | Msa1414180:intron | 40.0% |
| TCAAGCTTCTTGCAGAGAAT+TGG | - | tig0024098:25020-25039 | Msa1414180:CDS | 40.0% | |
| !!! | GAAATGGTTTTTGGGGTTGT+TGG | - | tig0024098:25199-25218 | Msa1414180:intron | 40.0% |
| TTGGGTTTGAATCCTGTCAT+CGG | - | tig0024098:25368-25387 | Msa1414180:intron | 40.0% | |
| CTCTATTGTATTCCGATGAC+AGG | + | tig0024098:25383-25402 | None:intergenic | 40.0% | |
| GTTCGATCATGTCAAGTATC+AGG | - | tig0024098:25612-25631 | Msa1414180:CDS | 40.0% | |
| ATCATGTCAAGTATCAGGGT+TGG | - | tig0024098:25617-25636 | Msa1414180:CDS | 40.0% | |
| !! | ATCAGGGTTGGTTTATTGGT+TGG | - | tig0024098:25629-25648 | Msa1414180:CDS | 40.0% |
| AAATGCTTCACTACCGTCAT+TGG | - | tig0024098:25848-25867 | Msa1414180:CDS | 40.0% | |
| CACCATGTATGTACTGCATA+TGG | + | tig0024098:26305-26324 | None:intergenic | 40.0% | |
| TATGCAGTACATACATGGTG+TGG | - | tig0024098:26305-26324 | Msa1414180:intron | 40.0% | |
| TGTTGGATTCTTCCTTCTTC+CGG | - | tig0024098:26377-26396 | Msa1414180:intron | 40.0% | |
| GAAAATTACGAACCGGAAGA+AGG | + | tig0024098:26392-26411 | None:intergenic | 40.0% | |
| GCAATTTCTTACCAAGGCAA+AGG | + | tig0024098:26563-26582 | None:intergenic | 40.0% | |
| TTGGTAAGAAATTGCTGTCC+CGG | - | tig0024098:26568-26587 | Msa1414180:intron | 40.0% | |
| CATAGTACGCCTATTGTGAT+AGG | - | tig0024098:26642-26661 | Msa1414180:intron | 40.0% | |
| CAGAACACACAACAACAACA+TGG | + | tig0024098:26712-26731 | None:intergenic | 40.0% | |
| ! | CATGTTGTTGTTGTGTGTTC+TGG | - | tig0024098:26710-26729 | Msa1414180:intron | 40.0% |
| AACAATTCCTCTCACTCGAT+AGG | + | tig0024098:26837-26856 | None:intergenic | 40.0% | |
| GAGGATTCAATAACCACCAT+AGG | - | tig0024098:26871-26890 | Msa1414180:intron | 40.0% | |
| TGAGATCTCTCATTTCTCAC+AGG | - | tig0024098:27050-27069 | Msa1414180:intron | 40.0% | |
| TTTGGTGGAAGAGAGAGAAA+GGG | - | tig0024098:27179-27198 | Msa1414180:intron | 40.0% | |
| ATAAAAAATGCCACATGGGG+TGG | - | tig0024098:27229-27248 | Msa1414180:intron | 40.0% | |
| ATTGTGGCAACCTCAAAAGA+AGG | + | tig0024098:27517-27536 | None:intergenic | 40.0% | |
| ACACGAGGAAAAATGAAGCA+GGG | + | tig0024098:27798-27817 | None:intergenic | 40.0% | |
| TACACGAGGAAAAATGAAGC+AGG | + | tig0024098:27799-27818 | None:intergenic | 40.0% | |
| !! | GCTTCATTTTTCCTCGTGTA+TGG | - | tig0024098:27799-27818 | Msa1414180:CDS | 40.0% |
| ATTGTGTGTATGTTCACTGC+AGG | - | tig0024098:27859-27878 | Msa1414180:intron | 40.0% | |
| ACTCTACTAATGTATCGAGC+AGG | - | tig0024098:28033-28052 | Msa1414180:intron | 40.0% | |
| CTCTACTAATGTATCGAGCA+GGG | - | tig0024098:28034-28053 | Msa1414180:intron | 40.0% | |
| TTCAAGGAAACTATCTGGAC+GGG | + | tig0024098:28080-28099 | None:intergenic | 40.0% | |
| CTTCAAGGAAACTATCTGGA+CGG | + | tig0024098:28081-28100 | None:intergenic | 40.0% | |
| ATCAGAAATATGGCACTCGA+AGG | - | tig0024098:28277-28296 | Msa1414180:intron | 40.0% | |
| AGCATCTCGCAAACATTACA+CGG | - | tig0024098:28530-28549 | Msa1414180:intron | 40.0% | |
| ! | CAGGTACACTGTTAATTTGG+TGG | - | tig0024098:28658-28677 | Msa1414180:intron | 40.0% |
| TATGCACACATAAGCAAACC+TGG | + | tig0024098:28707-28726 | None:intergenic | 40.0% | |
| !! | CTTTGTCTTTGGTGCTCAAT+GGG | + | tig0024098:29118-29137 | None:intergenic | 40.0% |
| !! | TCTTTGTCTTTGGTGCTCAA+TGG | + | tig0024098:29119-29138 | None:intergenic | 40.0% |
| TTGAGCACCAAAGACAAAGA+TGG | - | tig0024098:29119-29138 | Msa1414180:CDS | 40.0% | |
| TGTAGTTCTCCTCTTTGTTC+CGG | + | tig0024098:29145-29164 | None:intergenic | 40.0% | |
| TGTTCATGGAAGAGTCGTTA+TGG | + | tig0024098:29348-29367 | None:intergenic | 40.0% | |
| AGCTCCAACCTTCAATTAGA+AGG | - | tig0024098:29432-29451 | Msa1414180:five_prime_UTR | 40.0% | |
| TGTTGTGACTGGTATGAACG+TGG | + | tig0024098:24401-24420 | None:intergenic | 45.0% | |
| !! | TCTAGCTGGTCTTGTTTGTC+AGG | - | tig0024098:25051-25070 | Msa1414180:intron | 45.0% |
| GACCGTATCCAAAAAACGCT+TGG | - | tig0024098:25319-25338 | Msa1414180:intron | 45.0% | |
| ! | GCAATCACATCTTTCGGTGT+CGG | + | tig0024098:26142-26161 | None:intergenic | 45.0% |
| ! | TGATATTATCGCATCGACGC+TGG | + | tig0024098:26195-26214 | None:intergenic | 45.0% |
| ACATCTTGAAGAATAGGGCC+AGG | + | tig0024098:26360-26379 | None:intergenic | 45.0% | |
| GGCCCTATTCTTCAAGATGT+TGG | - | tig0024098:26360-26379 | Msa1414180:intron | 45.0% | |
| TCTAATCTTGATGCTTCGGC+AGG | - | tig0024098:26480-26499 | Msa1414180:intron | 45.0% | |
| GGGACAGCAATTTCTTACCA+AGG | + | tig0024098:26569-26588 | None:intergenic | 45.0% | |
| TGCCCATCTATAGAGACAGA+TGG | - | tig0024098:26673-26692 | Msa1414180:intron | 45.0% | |
| GCCCATCTATAGAGACAGAT+GGG | - | tig0024098:26674-26693 | Msa1414180:intron | 45.0% | |
| GCCCATCTGTCTCTATAGAT+GGG | + | tig0024098:26678-26697 | None:intergenic | 45.0% | |
| TGCCCATCTGTCTCTATAGA+TGG | + | tig0024098:26679-26698 | None:intergenic | 45.0% | |
| CATTGGGTGTGTAGAATGGA+GGG | + | tig0024098:27152-27171 | None:intergenic | 45.0% | |
| ACATTGGGTGTGTAGAATGG+AGG | + | tig0024098:27153-27172 | None:intergenic | 45.0% | |
| TCCACCAAACATGCGACATT+GGG | + | tig0024098:27168-27187 | None:intergenic | 45.0% | |
| TTCCACCAAACATGCGACAT+TGG | + | tig0024098:27169-27188 | None:intergenic | 45.0% | |
| ! | GTTTGGTGGAAGAGAGAGAA+AGG | - | tig0024098:27178-27197 | Msa1414180:intron | 45.0% |
| TGGGGTGGTATGGGAAAAAA+AGG | - | tig0024098:27244-27263 | Msa1414180:intron | 45.0% | |
| GGGGTGGTATGGGAAAAAAA+GGG | - | tig0024098:27245-27264 | Msa1414180:intron | 45.0% | |
| GGATGAAAAGTCCACTGCAA+AGG | + | tig0024098:27557-27576 | None:intergenic | 45.0% | |
| CAAATCATACCTCACGGCAA+TGG | + | tig0024098:27943-27962 | None:intergenic | 45.0% | |
| !! | GCCGTGAGGTATGATTTGTT+TGG | - | tig0024098:27945-27964 | Msa1414180:intron | 45.0% |
| TCAAGGAAACTATCTGGACG+GGG | + | tig0024098:28079-28098 | None:intergenic | 45.0% | |
| CATCCATATAACACGCCATG+CGG | + | tig0024098:28201-28220 | None:intergenic | 45.0% | |
| CATGGCGTGTTATATGGATG+CGG | - | tig0024098:28201-28220 | Msa1414180:intron | 45.0% | |
| ! | GCCAAAATATGTGATGGCGA+GGG | + | tig0024098:28407-28426 | None:intergenic | 45.0% |
| ! | TGCCAAAATATGTGATGGCG+AGG | + | tig0024098:28408-28427 | None:intergenic | 45.0% |
| ACCAGATCCATAAAGCAGCT+CGG | - | tig0024098:28471-28490 | Msa1414180:intron | 45.0% | |
| ATTCTGCAGAATTACCGGAC+CGG | - | tig0024098:29066-29085 | Msa1414180:CDS | 45.0% | |
| GTGGCGAGAACGGTTAAGAA+AGG | + | tig0024098:24382-24401 | None:intergenic | 50.0% | |
| TGGTATGAACGTGGCGAGAA+CGG | + | tig0024098:24392-24411 | None:intergenic | 50.0% | |
| CATTGGTCGTGAGGCTTCAA+AGG | - | tig0024098:24847-24866 | Msa1414180:intron | 50.0% | |
| ! | GAGGGAGAATTTTGCCACCT+AGG | - | tig0024098:25414-25433 | Msa1414180:intron | 50.0% |
| ! | GGAGAATTTTGCCACCTAGG+TGG | - | tig0024098:25417-25436 | Msa1414180:intron | 50.0% |
| TGAGACTAATCCCTCAAGCC+GGG | + | tig0024098:25448-25467 | None:intergenic | 50.0% | |
| CTGAGACTAATCCCTCAAGC+CGG | + | tig0024098:25449-25468 | None:intergenic | 50.0% | |
| ACTGACACAAACACGGACAC+CGG | + | tig0024098:26227-26246 | None:intergenic | 50.0% | |
| TTGATGCTTCGGCAGGAACT+TGG | - | tig0024098:26487-26506 | Msa1414180:intron | 50.0% | |
| GATACATTGACCACCCCATG+TGG | - | tig0024098:27122-27141 | Msa1414180:intron | 50.0% | |
| AATGGAGGGTTTGCCACATG+GGG | + | tig0024098:27138-27157 | None:intergenic | 50.0% | |
| GAATGGAGGGTTTGCCACAT+GGG | + | tig0024098:27139-27158 | None:intergenic | 50.0% | |
| AGAATGGAGGGTTTGCCACA+TGG | + | tig0024098:27140-27159 | None:intergenic | 50.0% | |
| GCGACATTGGGTGTGTAGAA+TGG | + | tig0024098:27156-27175 | None:intergenic | 50.0% | |
| CACACCCAATGTCGCATGTT+TGG | - | tig0024098:27161-27180 | Msa1414180:intron | 50.0% | |
| ACCCAATGTCGCATGTTTGG+TGG | - | tig0024098:27164-27183 | Msa1414180:intron | 50.0% | |
| AAATGCCACATGGGGTGGTA+TGG | - | tig0024098:27234-27253 | Msa1414180:intron | 50.0% | |
| AATGCCACATGGGGTGGTAT+GGG | - | tig0024098:27235-27254 | Msa1414180:intron | 50.0% | |
| ! | TTTTCCCATACCACCCCATG+TGG | + | tig0024098:27242-27261 | None:intergenic | 50.0% |
| TCCAAACTACCATTGCCGTG+AGG | - | tig0024098:27931-27950 | Msa1414180:intron | 50.0% | |
| ACCTCACGGCAATGGTAGTT+TGG | + | tig0024098:27935-27954 | None:intergenic | 50.0% | |
| GTTCCGCATGGCGTGTTATA+TGG | - | tig0024098:28195-28214 | Msa1414180:intron | 50.0% | |
| ! | GCCCTCGCCATCACATATTT+TGG | - | tig0024098:28403-28422 | Msa1414180:intron | 50.0% |
| CCAGATCCATAAAGCAGCTC+GGG | - | tig0024098:28472-28491 | Msa1414180:intron | 50.0% | |
| ! | GACGTAGTTGTCGCTTGGTA+AGG | - | tig0024098:28555-28574 | Msa1414180:intron | 50.0% |
| TTCAAAAGGGACACGAACGG+CGG | + | tig0024098:28608-28627 | None:intergenic | 50.0% | |
| !! | TTTGGTGCTCAATGGGAGCA+GGG | + | tig0024098:29111-29130 | None:intergenic | 50.0% |
| GCACCAAAGACAAAGATGGC+CGG | - | tig0024098:29123-29142 | Msa1414180:CDS | 50.0% | |
| GTTCCGGCCATCTTTGTCTT+TGG | + | tig0024098:29129-29148 | None:intergenic | 50.0% | |
| CAAAGATGGCCGGAACAAAG+AGG | - | tig0024098:29133-29152 | Msa1414180:CDS | 50.0% | |
| TTTGCCATACTCGATCCGCA+GGG | + | tig0024098:29193-29212 | None:intergenic | 50.0% | |
| ATTTGCCATACTCGATCCGC+AGG | + | tig0024098:29194-29213 | None:intergenic | 50.0% | |
| AACGGCAAGATCACGGATGA+CGG | - | tig0024098:29313-29332 | Msa1414180:five_prime_UTR | 50.0% | |
| ! | TTGAAGGCACATGCTGAAGC+TGG | + | tig0024098:29554-29573 | None:intergenic | 50.0% |
| GATCCTCTCAAGAGACCCCA+AGG | + | tig0024098:25828-25847 | None:intergenic | 55.0% | |
| GCGTGAGCGAGGGAAGATAA+AGG | + | tig0024098:26953-26972 | None:intergenic | 55.0% | |
| TCGTAGTTGTGCGTGAGCGA+GGG | + | tig0024098:26963-26982 | None:intergenic | 55.0% | |
| CGGCAATGGTAGTTTGGACC+AGG | + | tig0024098:27929-27948 | None:intergenic | 55.0% | |
| ACTATCTGGACGGGGCAATG+TGG | + | tig0024098:28071-28090 | None:intergenic | 55.0% | |
| ! | CCCGAGCTGCTTTATGGATC+TGG | + | tig0024098:28475-28494 | None:intergenic | 55.0% |
| GATCCATAAAGCAGCTCGGG+TGG | - | tig0024098:28475-28494 | Msa1414180:intron | 55.0% | |
| ! | TAGCCACCCGAGCTGCTTTA+TGG | + | tig0024098:28481-28500 | None:intergenic | 55.0% |
| CGGTTGACGTAGTTGTCGCT+TGG | - | tig0024098:28550-28569 | Msa1414180:intron | 55.0% | |
| TTGCTGCAGCTGCGATTGAC+CGG | + | tig0024098:29088-29107 | None:intergenic | 55.0% | |
| !! | CTTTGGTGCTCAATGGGAGC+AGG | + | tig0024098:29112-29131 | None:intergenic | 55.0% |
| ! | GCCACCTAGGTGGTTCTACC+CGG | - | tig0024098:25427-25446 | Msa1414180:intron | 60.0% |
| CAAGCCGGGTAGAACCACCT+AGG | + | tig0024098:25434-25453 | None:intergenic | 60.0% | |
| ! | AGGTGGTTCTACCCGGCTTG+AGG | - | tig0024098:25434-25453 | Msa1414180:CDS | 60.0% |
| ! | GGTGGTTCTACCCGGCTTGA+GGG | - | tig0024098:25435-25454 | Msa1414180:CDS | 60.0% |
| GGACCTTGGGGTCTCTTGAG+AGG | - | tig0024098:25822-25841 | Msa1414180:intron | 60.0% | |
| ACAGGGGCCTATCGAGTGAG+AGG | - | tig0024098:26827-26846 | Msa1414180:intron | 60.0% | |
| CTCGTAGTTGTGCGTGAGCG+AGG | + | tig0024098:26964-26983 | None:intergenic | 60.0% | |
| TGGGAATTCCGGTGACCCTG+CGG | - | tig0024098:29175-29194 | Msa1414180:intron | 60.0% | |
| TACTCGATCCGCAGGGTCAC+CGG | + | tig0024098:29186-29205 | None:intergenic | 60.0% | |
| GTGACCCTGCGGATCGAGTA+TGG | - | tig0024098:29186-29205 | Msa1414180:intron | 60.0% | |
| GCCGGGTAGAACCACCTAGG+TGG | + | tig0024098:25431-25450 | None:intergenic | 65.0% | |
| GGAGGGTTTGCCACATGGGG+TGG | + | tig0024098:27135-27154 | None:intergenic | 65.0% | |
| GCAGCTGCGATTGACCGGTC+CGG | + | tig0024098:29083-29102 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024098 | gene | 24355 | 29781 | 24355 | ID=Msa1414180;Name=Msa1414180 |
| tig0024098 | mRNA | 24355 | 29781 | 24355 | ID=Msa1414180-mRNA-1;Parent=Msa1414180;Name=Msa1414180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=481|1|1|1|1|1|12|406|315 |
| tig0024098 | exon | 24355 | 24841 | 24355 | ID=Msa1414180-mRNA-1:exon:21639;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 24934 | 25061 | 24934 | ID=Msa1414180-mRNA-1:exon:21638;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 25429 | 25475 | 25429 | ID=Msa1414180-mRNA-1:exon:21637;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 25565 | 25660 | 25565 | ID=Msa1414180-mRNA-1:exon:21636;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 25838 | 25940 | 25838 | ID=Msa1414180-mRNA-1:exon:21635;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 26021 | 26081 | 26021 | ID=Msa1414180-mRNA-1:exon:21634;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 26184 | 26255 | 26184 | ID=Msa1414180-mRNA-1:exon:21633;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 26493 | 26573 | 26493 | ID=Msa1414180-mRNA-1:exon:21632;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 27566 | 27634 | 27566 | ID=Msa1414180-mRNA-1:exon:21631;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 27738 | 27824 | 27738 | ID=Msa1414180-mRNA-1:exon:21630;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 29064 | 29153 | 29064 | ID=Msa1414180-mRNA-1:exon:21629;Parent=Msa1414180-mRNA-1 |
| tig0024098 | exon | 29268 | 29781 | 29268 | ID=Msa1414180-mRNA-1:exon:21628;Parent=Msa1414180-mRNA-1 |
| tig0024098 | five_prime_UTR | 29301 | 29781 | 29301 | ID=Msa1414180-mRNA-1:five_prime_utr;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 29268 | 29300 | 29268 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 29064 | 29153 | 29064 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 27738 | 27824 | 27738 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 27566 | 27634 | 27566 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 26493 | 26573 | 26493 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 26184 | 26255 | 26184 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 26021 | 26081 | 26021 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 25838 | 25940 | 25838 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 25565 | 25660 | 25565 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 25429 | 25475 | 25429 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 24934 | 25061 | 24934 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | CDS | 24761 | 24841 | 24761 | ID=Msa1414180-mRNA-1:cds;Parent=Msa1414180-mRNA-1 |
| tig0024098 | three_prime_UTR | 24355 | 24760 | 24355 | ID=Msa1414180-mRNA-1:three_prime_utr;Parent=Msa1414180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
