AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0591160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591160 MtrunA17_Chr4g0008901 100.000 315 0 0 22 336 1 315 0.0 655
Msa0591160 MtrunA17_Chr7g0240951 77.882 321 68 2 17 336 31 349 0.0 530
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591160 AT3G54020.1 73.968 315 72 3 22 336 1 305 5.07e-177 493
Msa0591160 AT2G37940.1 74.603 315 70 4 22 336 1 305 1.51e-175 489
Msa0591160 AT2G37940.2 74.603 315 70 4 22 336 1 305 1.51e-175 489
Msa0591160 AT2G29525.3 69.366 284 86 1 22 304 1 284 6.92e-148 418
Msa0591160 AT2G29525.1 69.366 284 86 1 22 304 1 284 6.92e-148 418
Msa0591160 AT2G29525.4 69.366 284 86 1 22 304 1 284 6.92e-148 418
Msa0591160 AT2G29525.2 72.764 246 67 0 22 267 1 246 8.77e-135 384
Msa0591160 AT2G29525.5 69.444 144 44 0 22 165 1 144 4.33e-70 216

Find 98 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCACCCGAGCTGCTTTA+TGG 0.168539 4_2:-15455240 None:intergenic
ATTACATAATGCTGAATATT+AGG 0.195901 4_2:-15456417 None:intergenic
AGATCTACACAGTTCTTATT+TGG 0.214205 4_2:+15454359 Msa0591160:CDS
CAAAGTGTCCAATGTGAAAA+AGG 0.223372 4_2:-15451303 None:intergenic
GTTCCGGCCATCTTTGTCTT+TGG 0.260597 4_2:-15455888 None:intergenic
TTGCAGGTACACTGTTAATT+TGG 0.284927 4_2:+15455417 Msa0591160:intron
TCACCTACACTGTACAAAAT+TGG 0.288251 4_2:+15456146 Msa0591160:three_prime_UTR
CTTTATCTATGCACTGTTCA+TGG 0.298978 4_2:-15456121 None:intergenic
TTTAAGGTTTAGTTGATTAC+TGG 0.298986 4_2:+15456515 Msa0591160:three_prime_UTR
CTTTGTCTTTGGTGCTCAAT+GGG 0.309227 4_2:-15455877 None:intergenic
AGCTCCAACCTTCAATTAGA+AGG 0.325872 4_2:+15456194 Msa0591160:three_prime_UTR
TGTTGGATTCTTCCTTCTTC+CGG 0.327738 4_2:+15453139 Msa0591160:CDS
GTACGTACATATCAGAAATA+TGG 0.333783 4_2:+15455029 Msa0591160:CDS
AATCCAACATCTTGAAGAAT+AGG 0.335204 4_2:-15453125 None:intergenic
TCAAGCTTCTTGCAGAGAAT+TGG 0.336508 4_2:+15451782 Msa0591160:CDS
TCTAGCTGGTCTTGTTTGTC+AGG 0.341522 4_2:+15451813 Msa0591160:CDS
TTATTATTCTGCAGAATTAC+CGG 0.343257 4_2:+15455823 Msa0591160:intron
TCTTTGTCTTTGGTGCTCAA+TGG 0.344617 4_2:-15455878 None:intergenic
TGTAGTTCTCCTCTTTGTTC+CGG 0.355270 4_2:-15455904 None:intergenic
ACCTCACGGCAATGGTAGTT+TGG 0.357521 4_2:-15454694 None:intergenic
ATATGAAGATAGAAGTGAAC+AGG 0.361540 4_2:-15453299 None:intergenic
CTTTGGTGCTCAATGGGAGC+AGG 0.366590 4_2:-15455871 None:intergenic
GTTCCGCATGGCGTGTTATA+TGG 0.369388 4_2:+15454957 Msa0591160:intron
CATGAACAGTGCATAGATAA+AGG 0.380012 4_2:+15456122 Msa0591160:exon
AAAACTTCAAGGAAACTATC+TGG 0.380533 4_2:-15454844 None:intergenic
GGCCCTATTCTTCAAGATGT+TGG 0.381446 4_2:+15453122 Msa0591160:CDS
ATCCAACATCTTGAAGAATA+GGG 0.408007 4_2:-15453124 None:intergenic
TATTCAGCATTATGTAATAT+AGG 0.410517 4_2:+15456422 Msa0591160:three_prime_UTR
CAACACAACCTTCTAATTGA+AGG 0.411740 4_2:-15456202 None:intergenic
TTGATGCTTCGGCAGGAACT+TGG 0.414797 4_2:+15453249 Msa0591160:intron
GTATCAGTGAAAGTTGAAAC+TGG 0.418389 4_2:+15456246 Msa0591160:three_prime_UTR
ATGAAAATAATGAACACTTC+GGG 0.434463 4_2:-15453093 None:intergenic
AAAGGGGCTTAATAGTCAAA+AGG 0.436630 4_2:-15451285 None:intergenic
GAGAACTACAAGCTATTGAA+TGG 0.448279 4_2:+15455917 Msa0591160:CDS
AGACAAAGATCTCAAATAAA+CGG 0.449180 4_2:+15456057 Msa0591160:CDS
ATCATCTCAATATTGATAAG+AGG 0.456489 4_2:-15456339 None:intergenic
CATTGGTCGTGAGGCTTCAA+AGG 0.462934 4_2:+15451609 Msa0591160:CDS
TTGCTGCAGCTGCGATTGAC+CGG 0.464627 4_2:-15455847 None:intergenic
TATCTTCATATCCTTTGCCT+TGG 0.467943 4_2:+15453311 Msa0591160:CDS
TTGAAGGCACATGCTGAAGC+TGG 0.469066 4_2:-15456313 None:intergenic
TACTCGATCCGCAGGGTCAC+CGG 0.482276 4_2:-15455945 None:intergenic
TTCACATTGGACACTTTGAT+CGG 0.485537 4_2:+15451308 Msa0591160:five_prime_UTR
CAGGTACACTGTTAATTTGG+TGG 0.486152 4_2:+15455420 Msa0591160:intron
CTGGATAATTTAATGAATCA+TGG 0.491000 4_2:-15456294 None:intergenic
GAAAATTACGAACCGGAAGA+AGG 0.491505 4_2:-15453151 None:intergenic
TGTTCATGGAAGAGTCGTTA+TGG 0.493513 4_2:-15456107 None:intergenic
AAGCTATTGAATGGGAATTC+CGG 0.495710 4_2:+15455926 Msa0591160:CDS
TATTGATAAGAGGAATTTGA+AGG 0.498411 4_2:-15456329 None:intergenic
CCAGATCCATAAAGCAGCTC+GGG 0.502477 4_2:+15455234 Msa0591160:intron
TTGGGTATCCGAATCTGAAT+CGG 0.502907 4_2:-15451386 None:intergenic
TTCAAGGAAACTATCTGGAC+GGG 0.504570 4_2:-15454839 None:intergenic
ATTTGCCATACTCGATCCGC+AGG 0.510093 4_2:-15455953 None:intergenic
TGGTATGAACGTGGCGAGAA+CGG 0.511715 4_2:-15451153 None:intergenic
TTTCTGCTCTTGAATATGAA+AGG 0.528016 4_2:-15454337 None:intergenic
TCAAATAAACGGCAAGATCA+CGG 0.528281 4_2:+15456068 Msa0591160:CDS
AAGGGGCTTAATAGTCAAAA+GGG 0.530119 4_2:-15451284 None:intergenic
TATGAAAATAATGAACACTT+CGG 0.533279 4_2:-15453094 None:intergenic
TAAGAAAGGAAAGGAGTAGA+GGG 0.534044 4_2:-15451129 None:intergenic
AACGGCAAGATCACGGATGA+CGG 0.534120 4_2:+15456075 Msa0591160:CDS
TTCCATATGCAGTACATACA+TGG 0.534449 4_2:+15453062 Msa0591160:intron
TGCAATTGCAATGTTGTGAC+TGG 0.534912 4_2:-15451173 None:intergenic
AATTGGAAGTATCTTCTAGC+TGG 0.540807 4_2:+15451799 Msa0591160:CDS
AGTTAATCACGAAAACTTCA+AGG 0.542211 4_2:-15454855 None:intergenic
CGGCAATGGTAGTTTGGACC+AGG 0.546032 4_2:-15454688 None:intergenic
AGAACTACAAGCTATTGAAT+GGG 0.546221 4_2:+15455918 Msa0591160:CDS
ACATCTTGAAGAATAGGGCC+AGG 0.549791 4_2:-15453119 None:intergenic
ACCAGATCCATAAAGCAGCT+CGG 0.553598 4_2:+15455233 Msa0591160:intron
TTAAGAAAGGAAAGGAGTAG+AGG 0.558367 4_2:-15451130 None:intergenic
ACAACCTTCTAATTGAAGGT+TGG 0.564029 4_2:-15456198 None:intergenic
GCAATTTCTTACCAAGGCAA+AGG 0.565542 4_2:-15453322 None:intergenic
AGCATCTCGCAAACATTACA+CGG 0.566819 4_2:+15455292 Msa0591160:CDS
TTGAGCACCAAAGACAAAGA+TGG 0.570634 4_2:+15455881 Msa0591160:CDS
GCAGCTGCGATTGACCGGTC+CGG 0.576129 4_2:-15455842 None:intergenic
TTTGTTGACAAGAAATTACC+AGG 0.576566 4_2:+15455448 Msa0591160:CDS
ATTTAATATGCAGTTCCGCA+TGG 0.576820 4_2:+15454945 Msa0591160:intron
TTTGGTGCTCAATGGGAGCA+GGG 0.591416 4_2:-15455870 None:intergenic
CGGTTGACGTAGTTGTCGCT+TGG 0.593772 4_2:+15455312 Msa0591160:CDS
GTGGCGAGAACGGTTAAGAA+AGG 0.594541 4_2:-15451143 None:intergenic
CAAAGATGGCCGGAACAAAG+AGG 0.595013 4_2:+15455895 Msa0591160:CDS
ATCAGAAATATGGCACTCGA+AGG 0.602949 4_2:+15455039 Msa0591160:CDS
CTTCAAGGAAACTATCTGGA+CGG 0.604774 4_2:-15454840 None:intergenic
AGGCATATAATGTAAAGAAG+AGG 0.607539 4_2:+15456442 Msa0591160:three_prime_UTR
GATCCATAAAGCAGCTCGGG+TGG 0.617816 4_2:+15455237 Msa0591160:intron
TATGAAGATAGAAGTGAACA+GGG 0.626652 4_2:-15453298 None:intergenic
GCACCAAAGACAAAGATGGC+CGG 0.628710 4_2:+15455885 Msa0591160:CDS
AATCAAAAGACTCTGAATCA+CGG 0.640459 4_2:-15455267 None:intergenic
ATTCTGCAGAATTACCGGAC+CGG 0.643880 4_2:+15455828 Msa0591160:intron
ACTATCTGGACGGGGCAATG+TGG 0.653488 4_2:-15454830 None:intergenic
CAAATCATACCTCACGGCAA+TGG 0.657286 4_2:-15454702 None:intergenic
TGGGAATTCCGGTGACCCTG+CGG 0.658595 4_2:+15455937 Msa0591160:CDS
TCAAGGAAACTATCTGGACG+GGG 0.668994 4_2:-15454838 None:intergenic
CATCCATATAACACGCCATG+CGG 0.672113 4_2:-15454960 None:intergenic
TATGCAGTACATACATGGTG+TGG 0.674913 4_2:+15453067 Msa0591160:intron
CATGGCGTGTTATATGGATG+CGG 0.685691 4_2:+15454963 Msa0591160:CDS
TTTGCCATACTCGATCCGCA+GGG 0.703388 4_2:-15455952 None:intergenic
GAGAACGGTTAAGAAAGGAA+AGG 0.713131 4_2:-15451138 None:intergenic
TCCAAACTACCATTGCCGTG+AGG 0.747588 4_2:+15454693 Msa0591160:CDS
TGTTGTGACTGGTATGAACG+TGG 0.757853 4_2:-15451162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATAATTTTTATAATTAG+AGG + chr4_2:15452105-15452124 Msa0591160:intron 10.0%
!! AAAAATATACTTCATAAAAT+TGG - chr4_2:15452722-15452741 None:intergenic 10.0%
!! CAAATAAATAATTAAACTAA+TGG - chr4_2:15452795-15452814 None:intergenic 10.0%
!!! TTTTATTTTAAAATTGAATG+TGG - chr4_2:15453761-15453780 None:intergenic 10.0%
!!! AATAAATTTAGAACATAAAA+TGG - chr4_2:15455808-15455827 None:intergenic 10.0%
!!! TTTTTTTTTTTGTGTAGTTA+TGG + chr4_2:15451728-15451747 Msa0591160:intron 15.0%
!!! ATTTTTATAATTAGAGGTTT+TGG + chr4_2:15452111-15452130 Msa0591160:intron 15.0%
!!! TTTTTATAATTAGAGGTTTT+GGG + chr4_2:15452112-15452131 Msa0591160:intron 15.0%
!!! TTCTATTTAACACATTTTAT+AGG - chr4_2:15453200-15453219 None:intergenic 15.0%
!! ATAAAATGTGTTAAATAGAA+TGG + chr4_2:15453200-15453219 Msa0591160:intron 15.0%
!! AAATAAGAAAGGATAATTAT+GGG - chr4_2:15454039-15454058 None:intergenic 15.0%
!! AAAATAAGAAAGGATAATTA+TGG - chr4_2:15454040-15454059 None:intergenic 15.0%
!! TAATCCAAATGAAATAAATA+AGG - chr4_2:15454175-15454194 None:intergenic 15.0%
!!! AATATTAAGTTTTTCAGATT+AGG + chr4_2:15455094-15455113 Msa0591160:intron 15.0%
!! ATATCTATACCATAATATAA+AGG - chr4_2:15455754-15455773 None:intergenic 15.0%
!!! AAAGTTTCATTTTTGCAAAT+TGG + chr4_2:15451447-15451466 Msa0591160:five_prime_UTR 20.0%
!!! AAGTTTCATTTTTGCAAATT+GGG + chr4_2:15451448-15451467 Msa0591160:five_prime_UTR 20.0%
!!! TTGTTACTTTTGAACTAATA+TGG + chr4_2:15451516-15451535 Msa0591160:exon 20.0%
!!! AATAACATGTCTTTTTACAT+TGG + chr4_2:15451592-15451611 Msa0591160:CDS 20.0%
!!! TTTTCTGTTAGTTATTCATT+TGG + chr4_2:15451649-15451668 Msa0591160:intron 20.0%
!! TTTCTGTTAGTTATTCATTT+GGG + chr4_2:15451650-15451669 Msa0591160:intron 20.0%
!!! TGTTTGTTTTGATTTATGTT+TGG + chr4_2:15451698-15451717 Msa0591160:intron 20.0%
!!! TTTATGTTTTTGTTTTGATG+TGG + chr4_2:15451923-15451942 Msa0591160:intron 20.0%
!! AATAGAGTTAAAATTCTTGA+GGG + chr4_2:15452158-15452177 Msa0591160:intron 20.0%
!!! TGTTTTAATGAGAGAATTAA+AGG + chr4_2:15452418-15452437 Msa0591160:intron 20.0%
!!! TTTAAGATGGAACTAATAAT+TGG - chr4_2:15452538-15452557 None:intergenic 20.0%
!!! ATTTTTTATGGAAAATAGTC+AGG + chr4_2:15452656-15452675 Msa0591160:intron 20.0%
!! TATGAAAATAATGAACACTT+CGG - chr4_2:15453097-15453116 None:intergenic 20.0%
!! ATCAAGATTAGAAATTACAA+AGG - chr4_2:15453234-15453253 None:intergenic 20.0%
!! TACAGATAATATATGAAAAC+CGG - chr4_2:15453352-15453371 None:intergenic 20.0%
!! GTGCATATATTATCTATAAA+AGG - chr4_2:15453571-15453590 None:intergenic 20.0%
!! TTTATAGATAATATATGCAC+AGG + chr4_2:15453571-15453590 Msa0591160:intron 20.0%
!! TTATAGATAATATATGCACA+GGG + chr4_2:15453572-15453591 Msa0591160:intron 20.0%
!! TTAAAATAAAATTGCATCTG+TGG + chr4_2:15453770-15453789 Msa0591160:intron 20.0%
!! AAAAAATAAAAAATGCCACA+TGG + chr4_2:15453986-15454005 Msa0591160:intron 20.0%
!! AAAAATAAAAAATGCCACAT+GGG + chr4_2:15453987-15454006 Msa0591160:intron 20.0%
!!! AATTATCCTTTCTTATTTTG+TGG + chr4_2:15454041-15454060 Msa0591160:intron 20.0%
!!! ATTATCCTTTCTTATTTTGT+GGG + chr4_2:15454042-15454061 Msa0591160:intron 20.0%
!! AAATAATCATTGTCCAAAAT+CGG - chr4_2:15454094-15454113 None:intergenic 20.0%
!!! ATTATTTACTCTCTGTTTTT+TGG + chr4_2:15454107-15454126 Msa0591160:intron 20.0%
!!! AACACCTTATTTATTTCATT+TGG + chr4_2:15454168-15454187 Msa0591160:intron 20.0%
!! TCAAAAGAGATTTAGAAAAT+AGG - chr4_2:15454201-15454220 None:intergenic 20.0%
!! ACATATCAAAGAATTTATTG+TGG - chr4_2:15454295-15454314 None:intergenic 20.0%
!!! AGCATATTTCTAATTACATA+TGG + chr4_2:15454596-15454615 Msa0591160:intron 20.0%
!! GTTAGTATACATTATTGTAT+TGG + chr4_2:15454878-15454897 Msa0591160:intron 20.0%
!! GATGAAAAGATTATTCAAAA+GGG - chr4_2:15455383-15455402 None:intergenic 20.0%
!! AGATGAAAAGATTATTCAAA+AGG - chr4_2:15455384-15455403 None:intergenic 20.0%
!! TAACAATGTTCAAACAAAAT+TGG + chr4_2:15455604-15455623 Msa0591160:intron 20.0%
!! CAATATATACCATAATCATA+GGG - chr4_2:15455647-15455666 None:intergenic 20.0%
!! TCAATATATACCATAATCAT+AGG - chr4_2:15455648-15455667 None:intergenic 20.0%
!! TGGTATATATTGAAGAAAAA+AGG + chr4_2:15455655-15455674 Msa0591160:intron 20.0%
!! GGTATATATTGAAGAAAAAA+GGG + chr4_2:15455656-15455675 Msa0591160:intron 20.0%
!! CATAAAAATGTATGACAAAT+TGG + chr4_2:15455700-15455719 Msa0591160:intron 20.0%
!! GATATTAATATATGCTATTG+TGG + chr4_2:15455769-15455788 Msa0591160:intron 20.0%
!! AATAAAGCCAAAAGAAAAAA+GGG - chr4_2:15456373-15456392 None:intergenic 20.0%
!! AAATAAAGCCAAAAGAAAAA+AGG - chr4_2:15456374-15456393 None:intergenic 20.0%
!! ATTACATAATGCTGAATATT+AGG - chr4_2:15456420-15456439 None:intergenic 20.0%
!! TATTCAGCATTATGTAATAT+AGG + chr4_2:15456422-15456441 Msa0591160:three_prime_UTR 20.0%
!! AGAAAAAGATCTGATTTTTG+AGG - chr4_2:15451356-15451375 None:intergenic 25.0%
!!! TTATTTTTCCGATTCAGATT+CGG + chr4_2:15451378-15451397 Msa0591160:five_prime_UTR 25.0%
!! TGAATTTTACTGTTGTGTTT+TGG + chr4_2:15451869-15451888 Msa0591160:intron 25.0%
!!! ATGTTTTTGGAAATGGTTTT+TGG + chr4_2:15451952-15451971 Msa0591160:intron 25.0%
!!! TGTTTTTGGAAATGGTTTTT+GGG + chr4_2:15451953-15451972 Msa0591160:intron 25.0%
! CAATAGAGTTAAAATTCTTG+AGG + chr4_2:15452157-15452176 Msa0591160:intron 25.0%
!! TTTTGTAGAATGCAAGTTAA+GGG - chr4_2:15452275-15452294 None:intergenic 25.0%
!! TTTTTGTAGAATGCAAGTTA+AGG - chr4_2:15452276-15452295 None:intergenic 25.0%
! AGTAATGTTCGTATTTAAGA+TGG - chr4_2:15452551-15452570 None:intergenic 25.0%
! ACATTACTCTCAATTATATG+TGG + chr4_2:15452563-15452582 Msa0591160:intron 25.0%
!!! AATATGCTGCTGATTTTTTA+TGG + chr4_2:15452644-15452663 Msa0591160:intron 25.0%
! ACTCGATATCTAAATCTAAA+CGG + chr4_2:15453038-15453057 Msa0591160:intron 25.0%
! ATGAAAATAATGAACACTTC+GGG - chr4_2:15453096-15453115 None:intergenic 25.0%
! AATGTGTTAAATAGAATGGT+AGG + chr4_2:15453204-15453223 Msa0591160:intron 25.0%
! AATTTCTAATCTTGATGCTT+CGG + chr4_2:15453238-15453257 Msa0591160:intron 25.0%
! ACAGATAATATATGAAAACC+GGG - chr4_2:15453351-15453370 None:intergenic 25.0%
! AGAAAATAACCTATCACAAT+AGG - chr4_2:15453416-15453435 None:intergenic 25.0%
! TATAGATAATATATGCACAG+GGG + chr4_2:15453573-15453592 Msa0591160:intron 25.0%
! AAAATAAAAAATGCCACATG+GGG + chr4_2:15453988-15454007 Msa0591160:intron 25.0%
!! TATTTCTTTTCCTTCTTTTG+AGG + chr4_2:15454266-15454285 Msa0591160:intron 25.0%
!! GTTTGTACTAACTTCTTTTA+AGG - chr4_2:15454477-15454496 None:intergenic 25.0%
!!! GTTTTAGTTTTGATTCCTTT+TGG + chr4_2:15454902-15454921 Msa0591160:intron 25.0%
! TTAATATTCCTATTCAGTTG+AGG - chr4_2:15455082-15455101 None:intergenic 25.0%
! ATTCTGATTTATTGTGAATG+TGG + chr4_2:15455203-15455222 Msa0591160:intron 25.0%
!! TTTCAATATTTGTGTCGTTA+AGG + chr4_2:15455567-15455586 Msa0591160:intron 25.0%
!! TTCAATATTTGTGTCGTTAA+GGG + chr4_2:15455568-15455587 Msa0591160:intron 25.0%
! AATGTTCAAACAAAATTGGT+AGG + chr4_2:15455608-15455627 Msa0591160:intron 25.0%
! TGAAGAAAAAAGGGTTATTA+AGG + chr4_2:15455665-15455684 Msa0591160:intron 25.0%
!!! TAGTTTCCAGTAGTTATTTT+TGG + chr4_2:15455723-15455742 Msa0591160:intron 25.0%
! TTGGAGTTACCTTTATATTA+TGG + chr4_2:15455742-15455761 Msa0591160:intron 25.0%
! TTATTATTCTGCAGAATTAC+CGG + chr4_2:15455823-15455842 Msa0591160:intron 25.0%
! ACATAGTGTAAAAGGAATAA+GGG - chr4_2:15455992-15456011 None:intergenic 25.0%
! AGACAAAGATCTCAAATAAA+CGG + chr4_2:15456057-15456076 Msa0591160:CDS 25.0%
! CTGGATAATTTAATGAATCA+TGG - chr4_2:15456297-15456316 None:intergenic 25.0%
! TATTGATAAGAGGAATTTGA+AGG - chr4_2:15456332-15456351 None:intergenic 25.0%
! ATCATCTCAATATTGATAAG+AGG - chr4_2:15456342-15456361 None:intergenic 25.0%
!! CACTATTTTCTTTCCAAAAA+GGG + chr4_2:15456489-15456508 Msa0591160:three_prime_UTR 25.0%
!! ACTATTTTCTTTCCAAAAAG+GGG + chr4_2:15456490-15456509 Msa0591160:three_prime_UTR 25.0%
!! TTTAAGGTTTAGTTGATTAC+TGG + chr4_2:15456515-15456534 Msa0591160:three_prime_UTR 25.0%
! AAAGTGTCCAATGTGAAAAA+GGG - chr4_2:15451305-15451324 None:intergenic 30.0%
!! TTTTCCCCTCTATGTTTTTT+TGG + chr4_2:15451839-15451858 Msa0591160:intron 30.0%
ATCACCAAAAAAACATAGAG+GGG - chr4_2:15451846-15451865 None:intergenic 30.0%
CATCACCAAAAAAACATAGA+GGG - chr4_2:15451847-15451866 None:intergenic 30.0%
TTTCCATTCATCACACAAAA+GGG - chr4_2:15451898-15451917 None:intergenic 30.0%
!!! GAGATGAATGTTTTTGGAAA+TGG + chr4_2:15451945-15451964 Msa0591160:intron 30.0%
!! GTTTTTGGAAATGGTTTTTG+GGG + chr4_2:15451954-15451973 Msa0591160:intron 30.0%
! TAACTTGTAGAGTGAAATCA+TGG + chr4_2:15452023-15452042 Msa0591160:intron 30.0%
AACTTGTAGAGTGAAATCAT+GGG + chr4_2:15452024-15452043 Msa0591160:intron 30.0%
!!! TTATTCATCCAAGCGTTTTT+TGG - chr4_2:15452092-15452111 None:intergenic 30.0%
CAATACATGATACTATCTTG+TGG + chr4_2:15452327-15452346 Msa0591160:intron 30.0%
GGAAGTTGTAAATACTTTGA+AGG + chr4_2:15452439-15452458 Msa0591160:intron 30.0%
TTGTTAAAGTCTTCCAATGA+CGG - chr4_2:15452626-15452645 None:intergenic 30.0%
TTGAATGCAATCACATCTTT+CGG - chr4_2:15452910-15452929 None:intergenic 30.0%
GATAATATCAATGTCTTGTC+CGG + chr4_2:15452967-15452986 Msa0591160:intron 30.0%
! GTTCATTATTTTCATAAGCC+TGG + chr4_2:15453101-15453120 Msa0591160:CDS 30.0%
ATCCAACATCTTGAAGAATA+GGG - chr4_2:15453127-15453146 None:intergenic 30.0%
AATCCAACATCTTGAAGAAT+AGG - chr4_2:15453128-15453147 None:intergenic 30.0%
TATGAAGATAGAAGTGAACA+GGG - chr4_2:15453301-15453320 None:intergenic 30.0%
ATATGAAGATAGAAGTGAAC+AGG - chr4_2:15453302-15453321 None:intergenic 30.0%
ACAACAACAACATGGAAATT+AGG - chr4_2:15453466-15453485 None:intergenic 30.0%
! TTGTTATTGTGAGAGATAAG+AGG + chr4_2:15453614-15453633 Msa0591160:intron 30.0%
CTAAACCATAATAGATCCTA+TGG - chr4_2:15453652-15453671 None:intergenic 30.0%
AGAGAAAGGGAATGATAAAA+GGG + chr4_2:15453954-15453973 Msa0591160:intron 30.0%
ATCAACCCACAAAATAAGAA+AGG - chr4_2:15454050-15454069 None:intergenic 30.0%
! TAAATCTCTTTTGACCAGTA+TGG + chr4_2:15454207-15454226 Msa0591160:intron 30.0%
TTTCTGCTCTTGAATATGAA+AGG - chr4_2:15454340-15454359 None:intergenic 30.0%
AGATCTACACAGTTCTTATT+TGG + chr4_2:15454359-15454378 Msa0591160:CDS 30.0%
!! CATCATGTCCTTTTTATTTC+AGG + chr4_2:15454420-15454439 Msa0591160:intron 30.0%
TAAAAATAAGTCAGGCCAAA+CGG - chr4_2:15454448-15454467 None:intergenic 30.0%
! TTTTATTCTACACAACTACC+TGG + chr4_2:15454670-15454689 Msa0591160:CDS 30.0%
AAAACTTCAAGGAAACTATC+TGG - chr4_2:15454847-15454866 None:intergenic 30.0%
AGTTAATCACGAAAACTTCA+AGG - chr4_2:15454858-15454877 None:intergenic 30.0%
GTACGTACATATCAGAAATA+TGG + chr4_2:15455029-15455048 Msa0591160:CDS 30.0%
CATATAAACCTCAACTGAAT+AGG + chr4_2:15455071-15455090 Msa0591160:intron 30.0%
AAACATGCCAAAATATGTGA+TGG - chr4_2:15455175-15455194 None:intergenic 30.0%
AATCAAAAGACTCTGAATCA+CGG - chr4_2:15455270-15455289 None:intergenic 30.0%
TTTGTTGACAAGAAATTACC+AGG + chr4_2:15455448-15455467 Msa0591160:CDS 30.0%
! ACAAAATTGGTAGGTAGTTT+TGG + chr4_2:15455617-15455636 Msa0591160:intron 30.0%
GTAACTCCAAAAATAACTAC+TGG - chr4_2:15455732-15455751 None:intergenic 30.0%
AGAACTACAAGCTATTGAAT+GGG + chr4_2:15455918-15455937 Msa0591160:CDS 30.0%
TGTAAAAGGAATAAGGGAAA+GGG - chr4_2:15455986-15456005 None:intergenic 30.0%
GACATAGTGTAAAAGGAATA+AGG - chr4_2:15455993-15456012 None:intergenic 30.0%
TTAGACAGACATAGTGTAAA+AGG - chr4_2:15456000-15456019 None:intergenic 30.0%
AGGCATATAATGTAAAGAAG+AGG + chr4_2:15456442-15456461 Msa0591160:three_prime_UTR 30.0%
! GCACTATTTTCTTTCCAAAA+AGG + chr4_2:15456488-15456507 Msa0591160:three_prime_UTR 30.0%
! TTTCCAAAAAGGGGTTTTTA+AGG + chr4_2:15456499-15456518 Msa0591160:three_prime_UTR 30.0%
! AAACCTTAAAAACCCCTTTT+TGG - chr4_2:15456505-15456524 None:intergenic 30.0%
TAAGAAAGGAAAGGAGTAGA+GGG - chr4_2:15451132-15451151 None:intergenic 35.0%
TTAAGAAAGGAAAGGAGTAG+AGG - chr4_2:15451133-15451152 None:intergenic 35.0%
AAGGGGCTTAATAGTCAAAA+GGG - chr4_2:15451287-15451306 None:intergenic 35.0%
AAAGGGGCTTAATAGTCAAA+AGG - chr4_2:15451288-15451307 None:intergenic 35.0%
!! ATTAAGCCCCTTTTTCACAT+TGG + chr4_2:15451295-15451314 Msa0591160:five_prime_UTR 35.0%
AAGTGTCCAATGTGAAAAAG+GGG - chr4_2:15451304-15451323 None:intergenic 35.0%
! CAAAGTGTCCAATGTGAAAA+AGG - chr4_2:15451306-15451325 None:intergenic 35.0%
TTCACATTGGACACTTTGAT+CGG + chr4_2:15451308-15451327 Msa0591160:five_prime_UTR 35.0%
CCAGAAAGAAAAACGCAATT+GGG - chr4_2:15451407-15451426 None:intergenic 35.0%
! CCAATTGCGTTTTTCTTTCT+GGG + chr4_2:15451405-15451424 Msa0591160:five_prime_UTR 35.0%
!! AATTGGAAGTATCTTCTAGC+TGG + chr4_2:15451799-15451818 Msa0591160:CDS 35.0%
CCATCACCAAAAAAACATAG+AGG - chr4_2:15451848-15451867 None:intergenic 35.0%
!!! CCTCTATGTTTTTTTGGTGA+TGG + chr4_2:15451845-15451864 Msa0591160:intron 35.0%
! TTTCCCTTTTGTGTGATGAA+TGG + chr4_2:15451892-15451911 Msa0591160:intron 35.0%
CTTTCCATTCATCACACAAA+AGG - chr4_2:15451899-15451918 None:intergenic 35.0%
! CTTTTGTGTGATGAATGGAA+AGG + chr4_2:15451897-15451916 Msa0591160:intron 35.0%
! GATGTGGAGATGAATGTTTT+TGG + chr4_2:15451939-15451958 Msa0591160:intron 35.0%
!!! AAATGGTTTTTGGGGTTGTT+GGG + chr4_2:15451962-15451981 Msa0591160:intron 35.0%
TGGGAAATTAGTGACATGTT+TGG + chr4_2:15451981-15452000 Msa0591160:intron 35.0%
!!! ATCCAAGCGTTTTTTGGATA+CGG - chr4_2:15452086-15452105 None:intergenic 35.0%
! TGTTCTTCATCAAGTTGTTC+AGG + chr4_2:15452303-15452322 Msa0591160:intron 35.0%
TTCGATCATGTCAAGTATCA+GGG + chr4_2:15452375-15452394 Msa0591160:intron 35.0%
!! AAGTATCAGGGTTGGTTTAT+TGG + chr4_2:15452387-15452406 Msa0591160:intron 35.0%
AGTTGACATTAGATGATGCA+CGG + chr4_2:15452496-15452515 Msa0591160:intron 35.0%
TCTCAATTATATGTGGACCT+TGG + chr4_2:15452570-15452589 Msa0591160:intron 35.0%
CTCAATTATATGTGGACCTT+GGG + chr4_2:15452571-15452590 Msa0591160:intron 35.0%
TCAATTATATGTGGACCTTG+GGG + chr4_2:15452572-15452591 Msa0591160:intron 35.0%
ATGGAAAATAGTCAGGACAA+AGG + chr4_2:15452663-15452682 Msa0591160:intron 35.0%
CTAGCACAAATACATCTCAT+TGG + chr4_2:15452846-15452865 Msa0591160:intron 35.0%
!! ATGAAGTACTGACACAAACA+CGG - chr4_2:15452996-15453015 None:intergenic 35.0%
TTCCATATGCAGTACATACA+TGG + chr4_2:15453062-15453081 Msa0591160:intron 35.0%
AGGGAATGAAAATTACGAAC+CGG - chr4_2:15453161-15453180 None:intergenic 35.0%
AGGTGAGAGTGAAAAAGAAA+GGG - chr4_2:15453180-15453199 None:intergenic 35.0%
TAGGTGAGAGTGAAAAAGAA+AGG - chr4_2:15453181-15453200 None:intergenic 35.0%
TATCTTCATATCCTTTGCCT+TGG + chr4_2:15453311-15453330 Msa0591160:CDS 35.0%
! AGTTTAGAACTTTGACGTCA+AGG - chr4_2:15453541-15453560 None:intergenic 35.0%
AACCACCATAGGATCTATTA+TGG + chr4_2:15453644-15453663 Msa0591160:intron 35.0%
AACCATAATAGATCCTATGG+TGG - chr4_2:15453649-15453668 None:intergenic 35.0%
TTAAAATTGAATGTGGCGCA+TGG - chr4_2:15453754-15453773 None:intergenic 35.0%
GAGAGAAAGGGAATGATAAA+AGG + chr4_2:15453953-15453972 Msa0591160:intron 35.0%
!!! TGGGTTGATGTTTTTTCCAA+AGG + chr4_2:15454061-15454080 Msa0591160:intron 35.0%
CAAAATCGGTATTCAACCTT+TGG - chr4_2:15454080-15454099 None:intergenic 35.0%
!!! CAAAGGTTGAATACCGATTT+TGG + chr4_2:15454078-15454097 Msa0591160:intron 35.0%
TCACAAAAACTAAGCCATAC+TGG - chr4_2:15454224-15454243 None:intergenic 35.0%
TTTGATATGTACCTTTGCAG+TGG + chr4_2:15454305-15454324 Msa0591160:intron 35.0%
AAACGGAGCCTGAAATAAAA+AGG - chr4_2:15454431-15454450 None:intergenic 35.0%
!! TTTTTATTTCAGGCTCCGTT+TGG + chr4_2:15454430-15454449 Msa0591160:intron 35.0%
GGAGACGTTAAAAATAAGTC+AGG - chr4_2:15454456-15454475 None:intergenic 35.0%
CAATTTATTGACCATACACG+AGG - chr4_2:15454575-15454594 None:intergenic 35.0%
ACCAAACAAATCATACCTCA+CGG - chr4_2:15454711-15454730 None:intergenic 35.0%
ATAATGCATGCTGTGTTGTA+AGG + chr4_2:15454733-15454752 Msa0591160:intron 35.0%
TAATGCATGCTGTGTTGTAA+GGG + chr4_2:15454734-15454753 Msa0591160:intron 35.0%
ATAAGTGACAAATCGCCAAA+AGG - chr4_2:15454920-15454939 None:intergenic 35.0%
ATTTAATATGCAGTTCCGCA+TGG + chr4_2:15454945-15454964 Msa0591160:intron 35.0%
TTATTCAAAAGGGACACGAA+CGG - chr4_2:15455373-15455392 None:intergenic 35.0%
!! TCTTTTTGTGCATGATTTGC+AGG + chr4_2:15455401-15455420 Msa0591160:intron 35.0%
TTGCAGGTACACTGTTAATT+TGG + chr4_2:15455417-15455436 Msa0591160:intron 35.0%
! TTTGGAGTTCCCTATGATTA+TGG + chr4_2:15455635-15455654 Msa0591160:intron 35.0%
ATGCTATTGTGGTTTACTTG+AGG + chr4_2:15455780-15455799 Msa0591160:intron 35.0%
GAGAACTACAAGCTATTGAA+TGG + chr4_2:15455917-15455936 Msa0591160:CDS 35.0%
AAGCTATTGAATGGGAATTC+CGG + chr4_2:15455926-15455945 Msa0591160:CDS 35.0%
GTGTAAAAGGAATAAGGGAA+AGG - chr4_2:15455987-15456006 None:intergenic 35.0%
TCAAATAAACGGCAAGATCA+CGG + chr4_2:15456068-15456087 Msa0591160:CDS 35.0%
CTTTATCTATGCACTGTTCA+TGG - chr4_2:15456124-15456143 None:intergenic 35.0%
CATGAACAGTGCATAGATAA+AGG + chr4_2:15456122-15456141 Msa0591160:exon 35.0%
TCACCTACACTGTACAAAAT+TGG + chr4_2:15456146-15456165 Msa0591160:three_prime_UTR 35.0%
! GATCCAATTTTGTACAGTGT+AGG - chr4_2:15456152-15456171 None:intergenic 35.0%
ACAACCTTCTAATTGAAGGT+TGG - chr4_2:15456201-15456220 None:intergenic 35.0%
CAACACAACCTTCTAATTGA+AGG - chr4_2:15456205-15456224 None:intergenic 35.0%
GTATCAGTGAAAGTTGAAAC+TGG + chr4_2:15456246-15456265 Msa0591160:three_prime_UTR 35.0%
!!! TGCATAGCCCTTTTTTCTTT+TGG + chr4_2:15456363-15456382 Msa0591160:three_prime_UTR 35.0%
GAGAACGGTTAAGAAAGGAA+AGG - chr4_2:15451141-15451160 None:intergenic 40.0%
TGCAATTGCAATGTTGTGAC+TGG - chr4_2:15451176-15451195 None:intergenic 40.0%
TTGGGTATCCGAATCTGAAT+CGG - chr4_2:15451389-15451408 None:intergenic 40.0%
! CCCAATTGCGTTTTTCTTTC+TGG + chr4_2:15451404-15451423 Msa0591160:five_prime_UTR 40.0%
CCCAGAAAGAAAAACGCAAT+TGG - chr4_2:15451408-15451427 None:intergenic 40.0%
! GTCTTTTTACATTGGTCGTG+AGG + chr4_2:15451600-15451619 Msa0591160:CDS 40.0%
TCAAGCTTCTTGCAGAGAAT+TGG + chr4_2:15451782-15451801 Msa0591160:CDS 40.0%
!!! GAAATGGTTTTTGGGGTTGT+TGG + chr4_2:15451961-15451980 Msa0591160:intron 40.0%
TTGGGTTTGAATCCTGTCAT+CGG + chr4_2:15452130-15452149 Msa0591160:intron 40.0%
CTCTATTGTATTCCGATGAC+AGG - chr4_2:15452145-15452164 None:intergenic 40.0%
GTTCGATCATGTCAAGTATC+AGG + chr4_2:15452374-15452393 Msa0591160:intron 40.0%
ATCATGTCAAGTATCAGGGT+TGG + chr4_2:15452379-15452398 Msa0591160:intron 40.0%
!! ATCAGGGTTGGTTTATTGGT+TGG + chr4_2:15452391-15452410 Msa0591160:intron 40.0%
AAATGCTTCACTACCGTCAT+TGG + chr4_2:15452610-15452629 Msa0591160:intron 40.0%
CACCATGTATGTACTGCATA+TGG - chr4_2:15453067-15453086 None:intergenic 40.0%
TATGCAGTACATACATGGTG+TGG + chr4_2:15453067-15453086 Msa0591160:intron 40.0%
TGTTGGATTCTTCCTTCTTC+CGG + chr4_2:15453139-15453158 Msa0591160:CDS 40.0%
GAAAATTACGAACCGGAAGA+AGG - chr4_2:15453154-15453173 None:intergenic 40.0%
GCAATTTCTTACCAAGGCAA+AGG - chr4_2:15453325-15453344 None:intergenic 40.0%
TTGGTAAGAAATTGCTGTCC+CGG + chr4_2:15453330-15453349 Msa0591160:intron 40.0%
CATAGTACGCCTATTGTGAT+AGG + chr4_2:15453404-15453423 Msa0591160:intron 40.0%
CAGAACACACAACAACAACA+TGG - chr4_2:15453474-15453493 None:intergenic 40.0%
! CATGTTGTTGTTGTGTGTTC+TGG + chr4_2:15453472-15453491 Msa0591160:intron 40.0%
AACAATTCCTCTCACTCGAT+AGG - chr4_2:15453599-15453618 None:intergenic 40.0%
GAGGATTCAATAACCACCAT+AGG + chr4_2:15453633-15453652 Msa0591160:intron 40.0%
TGAGATCTCTCATTTCTCAC+AGG + chr4_2:15453812-15453831 Msa0591160:intron 40.0%
TTTGGTGGAAGAGAGAGAAA+GGG + chr4_2:15453941-15453960 Msa0591160:intron 40.0%
ATAAAAAATGCCACATGGGG+TGG + chr4_2:15453991-15454010 Msa0591160:intron 40.0%
ATTGTGGCAACCTCAAAAGA+AGG - chr4_2:15454279-15454298 None:intergenic 40.0%
ACACGAGGAAAAATGAAGCA+GGG - chr4_2:15454560-15454579 None:intergenic 40.0%
TACACGAGGAAAAATGAAGC+AGG - chr4_2:15454561-15454580 None:intergenic 40.0%
!! GCTTCATTTTTCCTCGTGTA+TGG + chr4_2:15454561-15454580 Msa0591160:intron 40.0%
ATTGTGTGTATGTTCACTGC+AGG + chr4_2:15454621-15454640 Msa0591160:intron 40.0%
ACTCTACTAATGTATCGAGC+AGG + chr4_2:15454795-15454814 Msa0591160:intron 40.0%
CTCTACTAATGTATCGAGCA+GGG + chr4_2:15454796-15454815 Msa0591160:intron 40.0%
TTCAAGGAAACTATCTGGAC+GGG - chr4_2:15454842-15454861 None:intergenic 40.0%
CTTCAAGGAAACTATCTGGA+CGG - chr4_2:15454843-15454862 None:intergenic 40.0%
ATCAGAAATATGGCACTCGA+AGG + chr4_2:15455039-15455058 Msa0591160:CDS 40.0%
AGCATCTCGCAAACATTACA+CGG + chr4_2:15455292-15455311 Msa0591160:CDS 40.0%
! CAGGTACACTGTTAATTTGG+TGG + chr4_2:15455420-15455439 Msa0591160:intron 40.0%
TATGCACACATAAGCAAACC+TGG - chr4_2:15455469-15455488 None:intergenic 40.0%
!! CTTTGTCTTTGGTGCTCAAT+GGG - chr4_2:15455880-15455899 None:intergenic 40.0%
!! TCTTTGTCTTTGGTGCTCAA+TGG - chr4_2:15455881-15455900 None:intergenic 40.0%
TTGAGCACCAAAGACAAAGA+TGG + chr4_2:15455881-15455900 Msa0591160:CDS 40.0%
TGTAGTTCTCCTCTTTGTTC+CGG - chr4_2:15455907-15455926 None:intergenic 40.0%
TGTTCATGGAAGAGTCGTTA+TGG - chr4_2:15456110-15456129 None:intergenic 40.0%
AGCTCCAACCTTCAATTAGA+AGG + chr4_2:15456194-15456213 Msa0591160:three_prime_UTR 40.0%
TGTTGTGACTGGTATGAACG+TGG - chr4_2:15451165-15451184 None:intergenic 45.0%
!! TCTAGCTGGTCTTGTTTGTC+AGG + chr4_2:15451813-15451832 Msa0591160:CDS 45.0%
GACCGTATCCAAAAAACGCT+TGG + chr4_2:15452081-15452100 Msa0591160:intron 45.0%
! GCAATCACATCTTTCGGTGT+CGG - chr4_2:15452904-15452923 None:intergenic 45.0%
! TGATATTATCGCATCGACGC+TGG - chr4_2:15452957-15452976 None:intergenic 45.0%
ACATCTTGAAGAATAGGGCC+AGG - chr4_2:15453122-15453141 None:intergenic 45.0%
GGCCCTATTCTTCAAGATGT+TGG + chr4_2:15453122-15453141 Msa0591160:CDS 45.0%
TCTAATCTTGATGCTTCGGC+AGG + chr4_2:15453242-15453261 Msa0591160:intron 45.0%
GGGACAGCAATTTCTTACCA+AGG - chr4_2:15453331-15453350 None:intergenic 45.0%
TGCCCATCTATAGAGACAGA+TGG + chr4_2:15453435-15453454 Msa0591160:intron 45.0%
GCCCATCTATAGAGACAGAT+GGG + chr4_2:15453436-15453455 Msa0591160:intron 45.0%
GCCCATCTGTCTCTATAGAT+GGG - chr4_2:15453440-15453459 None:intergenic 45.0%
TGCCCATCTGTCTCTATAGA+TGG - chr4_2:15453441-15453460 None:intergenic 45.0%
CATTGGGTGTGTAGAATGGA+GGG - chr4_2:15453914-15453933 None:intergenic 45.0%
ACATTGGGTGTGTAGAATGG+AGG - chr4_2:15453915-15453934 None:intergenic 45.0%
TCCACCAAACATGCGACATT+GGG - chr4_2:15453930-15453949 None:intergenic 45.0%
TTCCACCAAACATGCGACAT+TGG - chr4_2:15453931-15453950 None:intergenic 45.0%
! GTTTGGTGGAAGAGAGAGAA+AGG + chr4_2:15453940-15453959 Msa0591160:intron 45.0%
TGGGGTGGTATGGGAAAAAA+AGG + chr4_2:15454006-15454025 Msa0591160:intron 45.0%
GGGGTGGTATGGGAAAAAAA+GGG + chr4_2:15454007-15454026 Msa0591160:intron 45.0%
GGATGAAAAGTCCACTGCAA+AGG - chr4_2:15454319-15454338 None:intergenic 45.0%
CAAATCATACCTCACGGCAA+TGG - chr4_2:15454705-15454724 None:intergenic 45.0%
!! GCCGTGAGGTATGATTTGTT+TGG + chr4_2:15454707-15454726 Msa0591160:intron 45.0%
TCAAGGAAACTATCTGGACG+GGG - chr4_2:15454841-15454860 None:intergenic 45.0%
CATCCATATAACACGCCATG+CGG - chr4_2:15454963-15454982 None:intergenic 45.0%
CATGGCGTGTTATATGGATG+CGG + chr4_2:15454963-15454982 Msa0591160:CDS 45.0%
! GCCAAAATATGTGATGGCGA+GGG - chr4_2:15455169-15455188 None:intergenic 45.0%
! TGCCAAAATATGTGATGGCG+AGG - chr4_2:15455170-15455189 None:intergenic 45.0%
ACCAGATCCATAAAGCAGCT+CGG + chr4_2:15455233-15455252 Msa0591160:intron 45.0%
ATTCTGCAGAATTACCGGAC+CGG + chr4_2:15455828-15455847 Msa0591160:intron 45.0%
GTGGCGAGAACGGTTAAGAA+AGG - chr4_2:15451146-15451165 None:intergenic 50.0%
TGGTATGAACGTGGCGAGAA+CGG - chr4_2:15451156-15451175 None:intergenic 50.0%
CATTGGTCGTGAGGCTTCAA+AGG + chr4_2:15451609-15451628 Msa0591160:CDS 50.0%
! GAGGGAGAATTTTGCCACCT+AGG + chr4_2:15452176-15452195 Msa0591160:intron 50.0%
! GGAGAATTTTGCCACCTAGG+TGG + chr4_2:15452179-15452198 Msa0591160:intron 50.0%
TGAGACTAATCCCTCAAGCC+GGG - chr4_2:15452210-15452229 None:intergenic 50.0%
CTGAGACTAATCCCTCAAGC+CGG - chr4_2:15452211-15452230 None:intergenic 50.0%
ACTGACACAAACACGGACAC+CGG - chr4_2:15452989-15453008 None:intergenic 50.0%
TTGATGCTTCGGCAGGAACT+TGG + chr4_2:15453249-15453268 Msa0591160:intron 50.0%
GATACATTGACCACCCCATG+TGG + chr4_2:15453884-15453903 Msa0591160:intron 50.0%
AATGGAGGGTTTGCCACATG+GGG - chr4_2:15453900-15453919 None:intergenic 50.0%
GAATGGAGGGTTTGCCACAT+GGG - chr4_2:15453901-15453920 None:intergenic 50.0%
AGAATGGAGGGTTTGCCACA+TGG - chr4_2:15453902-15453921 None:intergenic 50.0%
GCGACATTGGGTGTGTAGAA+TGG - chr4_2:15453918-15453937 None:intergenic 50.0%
CACACCCAATGTCGCATGTT+TGG + chr4_2:15453923-15453942 Msa0591160:intron 50.0%
ACCCAATGTCGCATGTTTGG+TGG + chr4_2:15453926-15453945 Msa0591160:intron 50.0%
AAATGCCACATGGGGTGGTA+TGG + chr4_2:15453996-15454015 Msa0591160:intron 50.0%
AATGCCACATGGGGTGGTAT+GGG + chr4_2:15453997-15454016 Msa0591160:intron 50.0%
! TTTTCCCATACCACCCCATG+TGG - chr4_2:15454004-15454023 None:intergenic 50.0%
TCCAAACTACCATTGCCGTG+AGG + chr4_2:15454693-15454712 Msa0591160:CDS 50.0%
ACCTCACGGCAATGGTAGTT+TGG - chr4_2:15454697-15454716 None:intergenic 50.0%
GTTCCGCATGGCGTGTTATA+TGG + chr4_2:15454957-15454976 Msa0591160:intron 50.0%
! GCCCTCGCCATCACATATTT+TGG + chr4_2:15455165-15455184 Msa0591160:intron 50.0%
CCAGATCCATAAAGCAGCTC+GGG + chr4_2:15455234-15455253 Msa0591160:intron 50.0%
! GACGTAGTTGTCGCTTGGTA+AGG + chr4_2:15455317-15455336 Msa0591160:intron 50.0%
TTCAAAAGGGACACGAACGG+CGG - chr4_2:15455370-15455389 None:intergenic 50.0%
!! TTTGGTGCTCAATGGGAGCA+GGG - chr4_2:15455873-15455892 None:intergenic 50.0%
GCACCAAAGACAAAGATGGC+CGG + chr4_2:15455885-15455904 Msa0591160:CDS 50.0%
GTTCCGGCCATCTTTGTCTT+TGG - chr4_2:15455891-15455910 None:intergenic 50.0%
CAAAGATGGCCGGAACAAAG+AGG + chr4_2:15455895-15455914 Msa0591160:CDS 50.0%
TTTGCCATACTCGATCCGCA+GGG - chr4_2:15455955-15455974 None:intergenic 50.0%
ATTTGCCATACTCGATCCGC+AGG - chr4_2:15455956-15455975 None:intergenic 50.0%
AACGGCAAGATCACGGATGA+CGG + chr4_2:15456075-15456094 Msa0591160:CDS 50.0%
! TTGAAGGCACATGCTGAAGC+TGG - chr4_2:15456316-15456335 None:intergenic 50.0%
GATCCTCTCAAGAGACCCCA+AGG - chr4_2:15452590-15452609 None:intergenic 55.0%
GCGTGAGCGAGGGAAGATAA+AGG - chr4_2:15453715-15453734 None:intergenic 55.0%
TCGTAGTTGTGCGTGAGCGA+GGG - chr4_2:15453725-15453744 None:intergenic 55.0%
CGGCAATGGTAGTTTGGACC+AGG - chr4_2:15454691-15454710 None:intergenic 55.0%
ACTATCTGGACGGGGCAATG+TGG - chr4_2:15454833-15454852 None:intergenic 55.0%
! CCCGAGCTGCTTTATGGATC+TGG - chr4_2:15455237-15455256 None:intergenic 55.0%
GATCCATAAAGCAGCTCGGG+TGG + chr4_2:15455237-15455256 Msa0591160:intron 55.0%
! TAGCCACCCGAGCTGCTTTA+TGG - chr4_2:15455243-15455262 None:intergenic 55.0%
CGGTTGACGTAGTTGTCGCT+TGG + chr4_2:15455312-15455331 Msa0591160:CDS 55.0%
TTGCTGCAGCTGCGATTGAC+CGG - chr4_2:15455850-15455869 None:intergenic 55.0%
!! CTTTGGTGCTCAATGGGAGC+AGG - chr4_2:15455874-15455893 None:intergenic 55.0%
! GCCACCTAGGTGGTTCTACC+CGG + chr4_2:15452189-15452208 Msa0591160:intron 60.0%
CAAGCCGGGTAGAACCACCT+AGG - chr4_2:15452196-15452215 None:intergenic 60.0%
! AGGTGGTTCTACCCGGCTTG+AGG + chr4_2:15452196-15452215 Msa0591160:intron 60.0%
! GGTGGTTCTACCCGGCTTGA+GGG + chr4_2:15452197-15452216 Msa0591160:intron 60.0%
GGACCTTGGGGTCTCTTGAG+AGG + chr4_2:15452584-15452603 Msa0591160:intron 60.0%
ACAGGGGCCTATCGAGTGAG+AGG + chr4_2:15453589-15453608 Msa0591160:intron 60.0%
CTCGTAGTTGTGCGTGAGCG+AGG - chr4_2:15453726-15453745 None:intergenic 60.0%
TGGGAATTCCGGTGACCCTG+CGG + chr4_2:15455937-15455956 Msa0591160:CDS 60.0%
TACTCGATCCGCAGGGTCAC+CGG - chr4_2:15455948-15455967 None:intergenic 60.0%
GTGACCCTGCGGATCGAGTA+TGG + chr4_2:15455948-15455967 Msa0591160:intron 60.0%
GCCGGGTAGAACCACCTAGG+TGG - chr4_2:15452193-15452212 None:intergenic 65.0%
GGAGGGTTTGCCACATGGGG+TGG - chr4_2:15453897-15453916 None:intergenic 65.0%
GCAGCTGCGATTGACCGGTC+CGG - chr4_2:15455845-15455864 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 15451119 15456543 15451119 ID=Msa0591160;Name=Msa0591160
chr4_2 mRNA 15451119 15456543 15451119 ID=Msa0591160-mRNA-1;Parent=Msa0591160;Name=Msa0591160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=416|1|1|1|1|1|12|406|336
chr4_2 exon 15451119 15451630 15451119 ID=Msa0591160-mRNA-1:exon:4367;Parent=Msa0591160-mRNA-1
chr4_2 exon 15451745 15451834 15451745 ID=Msa0591160-mRNA-1:exon:4368;Parent=Msa0591160-mRNA-1
chr4_2 exon 15453074 15453160 15453074 ID=Msa0591160-mRNA-1:exon:4369;Parent=Msa0591160-mRNA-1
chr4_2 exon 15453264 15453332 15453264 ID=Msa0591160-mRNA-1:exon:4370;Parent=Msa0591160-mRNA-1
chr4_2 exon 15454325 15454405 15454325 ID=Msa0591160-mRNA-1:exon:4371;Parent=Msa0591160-mRNA-1
chr4_2 exon 15454643 15454714 15454643 ID=Msa0591160-mRNA-1:exon:4372;Parent=Msa0591160-mRNA-1
chr4_2 exon 15454817 15454877 15454817 ID=Msa0591160-mRNA-1:exon:4373;Parent=Msa0591160-mRNA-1
chr4_2 exon 15454958 15455060 15454958 ID=Msa0591160-mRNA-1:exon:4374;Parent=Msa0591160-mRNA-1
chr4_2 exon 15455238 15455333 15455238 ID=Msa0591160-mRNA-1:exon:4375;Parent=Msa0591160-mRNA-1
chr4_2 exon 15455423 15455469 15455423 ID=Msa0591160-mRNA-1:exon:4376;Parent=Msa0591160-mRNA-1
chr4_2 exon 15455837 15455964 15455837 ID=Msa0591160-mRNA-1:exon:4377;Parent=Msa0591160-mRNA-1
chr4_2 exon 15456057 15456543 15456057 ID=Msa0591160-mRNA-1:exon:4378;Parent=Msa0591160-mRNA-1
chr4_2 five_prime_UTR 15451119 15451534 15451119 ID=Msa0591160-mRNA-1:five_prime_utr;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15451535 15451630 15451535 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15451745 15451834 15451745 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15453074 15453160 15453074 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15453264 15453332 15453264 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15454325 15454405 15454325 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15454643 15454714 15454643 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15454817 15454877 15454817 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15454958 15455060 15454958 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15455238 15455333 15455238 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15455423 15455469 15455423 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15455837 15455964 15455837 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 CDS 15456057 15456137 15456057 ID=Msa0591160-mRNA-1:cds;Parent=Msa0591160-mRNA-1
chr4_2 three_prime_UTR 15456138 15456543 15456138 ID=Msa0591160-mRNA-1:three_prime_utr;Parent=Msa0591160-mRNA-1
Gene Sequence

>Msa0591160

ATGGAACTGTTCATAACACAACAAACACACATCATCAACAACAACACTAACAACAACAATAACATGTCTTTTTACATTGGTCGTGAGGCTTCAAAGTTATGGAAGAGAATTTGCTCAGAGATAAGTATTGAGATCAAGCTTCTTGCAGAGAATTGGAAGTATCTTCTAGCTGGTCTTGTTTGTCAGTACATACATGGTGTGGCAGCCCGAAGTGTTCATTATTTTCATAAGCCTGGCCCTATTCTTCAAGATGTTGGATTCTTCCTTCTTCCGGAACTTGGACAAGACAAAGCTTACATCAGTGAAACCCTGTTCACTTCTATCTTCATATCCTTTGCCTTGTGGACTTTTCATCCTTTCATATTCAAGAGCAGAAAGATCTACACAGTTCTTATTTGGTGCAGAGTTCTAGCTTTCTTATTTGCTTCTCAAATTCTTCGCATAATCACATTTTATTCTACACAACTACCTGGTCCAAACTACCATTGCCGTGAGGGTTCTAAACTTGCCACATTGCCCCGTCCAGATAGTTTCCTTGAAGTTTTCGTGATTAACTTTCCGCATGGCGTGTTATATGGATGCGGTGATTTAATATTTTCGTCACACATGATCTTTACTCTTACTTTCGTACGTACATATCAGAAATATGGCACTCGAAGATCCATAAAGCAGCTCGGGTGGCTACTTGCCGTGATTCAGAGTCTTTTGATTGTAGCATCTCGCAAACATTACACGGTTGACGTAGTTGTCGCTTGGTACACTGTTAATTTGGTGGTATTTTTTGTTGACAAGAAATTACCAGAATTACCGGACCGGTCAATCGCAGCTGCAGCAACCCTGCTCCCATTGAGCACCAAAGACAAAGATGGCCGGAACAAAGAGGAGAACTACAAGCTATTGAATGGGAATTCCGGTGACCCTGCGGATCGAAGACAAAGATCTCAAATAAACGGCAAGATCACGGATGACGGCAATACACACCATAACGACTCTTCCATGAACAGTGCATAG

Protein sequence

>Msa0591160

MELFITQQTHIINNNTNNNNNMSFYIGREASKLWKRICSEISIEIKLLAENWKYLLAGLVCQYIHGVAARSVHYFHKPGPILQDVGFFLLPELGQDKAYISETLFTSIFISFALWTFHPFIFKSRKIYTVLIWCRVLAFLFASQILRIITFYSTQLPGPNYHCREGSKLATLPRPDSFLEVFVINFPHGVLYGCGDLIFSSHMIFTLTFVRTYQKYGTRRSIKQLGWLLAVIQSLLIVASRKHYTVDVVVAWYTVNLVVFFVDKKLPELPDRSIAAAATLLPLSTKDKDGRNKEENYKLLNGNSGDPADRRQRSQINGKITDDGNTHHNDSSMNSA*