AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163550 MtrunA17_Chr1g0178661 96.074 484 19 0 53 536 1 484 0.0 872
Msa0163550 MtrunA17_Chr7g0266231 77.218 496 92 10 52 535 7 493 0.0 672
Msa0163550 MtrunA17_Chr3g0100581 60.000 310 122 1 173 482 54 361 9.00e-110 333
Msa0163550 MtrunA17_Chr5g0445051 57.966 295 121 2 189 482 74 366 7.54e-108 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163550 AT3G52750.3 78.738 428 77 3 109 536 60 473 0.0 635
Msa0163550 AT3G52750.2 78.738 428 77 3 109 536 60 473 0.0 635
Msa0163550 AT3G52750.1 78.738 428 77 3 109 536 60 473 0.0 635
Msa0163550 AT2G36250.2 75.435 460 93 8 84 536 32 478 0.0 630
Msa0163550 AT2G36250.3 75.435 460 93 8 84 536 32 478 0.0 630
Msa0163550 AT2G36250.1 75.435 460 93 8 84 536 32 478 0.0 630
Msa0163550 AT2G36250.4 80.988 405 65 6 136 536 1 397 0.0 602
Msa0163550 AT3G52750.4 78.157 293 53 2 109 401 60 341 1.46e-144 420
Msa0163550 AT5G55280.1 56.395 344 146 2 141 482 38 379 3.11e-107 328

Find 140 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTCCTTCAAATGAAAA+AGG 0.157995 1_4:+41815040 None:intergenic
AATGGAAAGTTTGAATCTTT+TGG 0.190151 1_4:-41817050 Msa0163550:CDS
TCGATTGAAGAGGCGGTTTA+TGG 0.213081 1_4:-41816373 Msa0163550:CDS
CAGTCTCCTTTACTGGATAT+TGG 0.228609 1_4:-41814407 Msa0163550:CDS
ATGATATGAACTACCATTAT+TGG 0.238506 1_4:+41816786 None:intergenic
CAGAGCTTGTTATAATTCTT+TGG 0.241011 1_4:-41811714 Msa0163550:three_prime_UTR
TGCTATTCAGTCTCCTTTAC+TGG 0.257008 1_4:-41814414 Msa0163550:CDS
CCTTTCTTCTTTAAGAAATC+AGG 0.259901 1_4:+41812247 None:intergenic
AGATTGAATGCTTCCGTTAC+AGG 0.277515 1_4:+41814911 None:intergenic
CGATGCATGGAGTTGAGTTT+TGG 0.278093 1_4:-41816540 Msa0163550:CDS
CAGGCGAAGATTAAAGTTAT+TGG 0.286240 1_4:-41816610 Msa0163550:CDS
TGCTGATATTCGAGCTATAA+TGG 0.295573 1_4:-41814708 Msa0163550:CDS
CCTGAGGTTTCGATGCTTAG+AGG 0.298697 1_4:-41816736 Msa0163550:CDS
GAGAAAGGGTAGTTCTAGTT+TGG 0.317072 1_4:-41816686 Msa0163550:CDS
GTAATAGATCCTTCACTTAC+TGG 0.318596 1_4:-41813290 Msa0163550:CDS
TTAGGTAGTGAGAGAAAGTT+AGG 0.327999 1_4:-41816838 Msa0163550:CDS
TGTTCAATTAATTCCAATAA+TGG 0.333990 1_4:-41816799 Msa0163550:CDS
AAGAGTTGTTCATACAGTTT+TGG 0.336510 1_4:-41812075 Msa0163550:three_prime_UTR
GCTGGAATGGGTGGTGGAAC+CGG 0.337874 1_4:-41815136 Msa0163550:CDS
GCAGTTAATAGCTTGTCATT+TGG 0.353188 1_4:+41814950 None:intergenic
GCAGCATTCATTCCCATCTC+AGG 0.363659 1_4:+41816412 None:intergenic
TTGGAACTTACGCGAGGTCT+TGG 0.365517 1_4:-41816448 Msa0163550:CDS
AATTCCTTCTTGTGCTTGAA+TGG 0.366217 1_4:+41815012 None:intergenic
AAGGAAAATGTTCATAAAAC+AGG 0.377030 1_4:+41811691 None:intergenic
AGTTGTGGGAAGCATTTGAT+TGG 0.378649 1_4:+41817335 None:intergenic
AGGATTTGTCCGAGAGCTTA+GGG 0.379506 1_4:-41816660 Msa0163550:CDS
AATGCTTCCCACAACTTCTC+AGG 0.391050 1_4:-41817328 Msa0163550:intron
GAGGATTTGTCCGAGAGCTT+AGG 0.397003 1_4:-41816661 Msa0163550:CDS
AGCATAACATTAATTGCAAC+CGG 0.408343 1_4:-41812477 Msa0163550:CDS
CAATGCTGGTTCTTCACTGA+TGG 0.410946 1_4:-41814684 Msa0163550:CDS
GAACCGTCTGCAGATTGGTT+TGG 0.412737 1_4:-41816467 Msa0163550:CDS
GGCGGTTTATGGAGCTGATA+TGG 0.416466 1_4:-41816362 Msa0163550:CDS
TGCTGATGATATTCTTCGAC+AGG 0.422970 1_4:-41814888 Msa0163550:CDS
TTCCTCTTGACGCTTGAATC+CGG 0.423864 1_4:+41812458 None:intergenic
ATGGGTGGTGGAACCGGCAC+AGG 0.425036 1_4:-41815130 Msa0163550:CDS
AAAGAAATGCACAGAGCATT+GGG 0.426774 1_4:+41812189 None:intergenic
TGAATATATGGAGAAAACTT+AGG 0.428211 1_4:+41817024 None:intergenic
CCTGATTTCTTAAAGAAGAA+AGG 0.429798 1_4:-41812247 Msa0163550:CDS
ACTTACTGAGTGCAGATCCC+TGG 0.436250 1_4:-41814749 Msa0163550:intron
CCCTGCTGAATTTATAGCAT+TGG 0.436792 1_4:+41816939 None:intergenic
GGGGTGTTTAATGTTATTAG+AGG 0.438406 1_4:-41816919 Msa0163550:CDS
TTTGATTGGAAAACTGCAAA+AGG 0.443482 1_4:+41817349 None:intergenic
GAGTGATCTGACTTTGTTTG+AGG 0.444135 1_4:-41814342 Msa0163550:intron
GTTATTGGTGTAGGAGGTGG+TGG 0.444462 1_4:-41816595 Msa0163550:CDS
AGAAAGGGTAGTTCTAGTTT+GGG 0.447853 1_4:-41816685 Msa0163550:CDS
CCAATCTGCAGACGGTTCTC+AGG 0.448678 1_4:+41816472 None:intergenic
GTTATTAATAACATTGGTCT+AGG 0.449498 1_4:-41812139 Msa0163550:three_prime_UTR
AAACTAGAACTACCCTTTCT+CGG 0.450362 1_4:+41816688 None:intergenic
ATTCTTCGACAGGGCGTTCG+TGG 0.450765 1_4:-41814878 Msa0163550:CDS
GGAATTGTGTGGAACATAAC+TGG 0.451299 1_4:-41814368 Msa0163550:CDS
GGGTAGTTCTAGTTTGGGTG+AGG 0.451348 1_4:-41816680 Msa0163550:CDS
TCCAATGCTATAAATTCAGC+AGG 0.456266 1_4:-41816940 Msa0163550:CDS
GGTGGTGCTCCGATTATTGC+TGG 0.461113 1_4:-41815109 Msa0163550:CDS
TTTGCAACACCAGCAATAAT+CGG 0.461666 1_4:+41815100 None:intergenic
TCAGGATGCAGATGTAGAAA+AGG 0.462170 1_4:+41816754 None:intergenic
AAGGACGCTCACGCTATCCT+AGG 0.463769 1_4:-41812228 Msa0163550:CDS
CACGGTGAATGTTCCGAGAA+AGG 0.465295 1_4:-41816701 Msa0163550:CDS
ATTGGTATAGAGAGGGCTAC+TGG 0.466303 1_4:-41814389 Msa0163550:CDS
AAGATTAAAGTTATTGGTGT+AGG 0.467049 1_4:-41816604 Msa0163550:CDS
CCTTCCTCGTTCTCTGATGA+TGG 0.472648 1_4:-41812286 Msa0163550:CDS
CAATGGGTATACTGACTGTT+GGG 0.476043 1_4:-41815075 Msa0163550:CDS
AATGCTGGTTCTTCACTGAT+GGG 0.476321 1_4:-41814683 Msa0163550:CDS
CAAAGAAATGCACAGAGCAT+TGG 0.476789 1_4:+41812188 None:intergenic
AAAGTTATTGGTGTAGGAGG+TGG 0.478162 1_4:-41816598 Msa0163550:CDS
CCTGAGAACCGTCTGCAGAT+TGG 0.481006 1_4:-41816472 Msa0163550:CDS
ATTAAAGTTATTGGTGTAGG+AGG 0.483640 1_4:-41816601 Msa0163550:CDS
AAATCAACATTTACCATCCC+AGG 0.484005 1_4:+41814731 None:intergenic
TGCTGGTGTTGCAAAGTCAA+TGG 0.486003 1_4:-41815092 Msa0163550:CDS
GATTGAATGCTTCCGTTACA+GGG 0.488232 1_4:+41814912 None:intergenic
ATGGGGATAGGAACTGCAAC+TGG 0.490129 1_4:-41814665 Msa0163550:intron
CTTACTGAGTGCAGATCCCT+GGG 0.499177 1_4:-41814748 Msa0163550:intron
GAATATATGGAGAAAACTTA+GGG 0.505068 1_4:+41817025 None:intergenic
CTTTCTTCTTTAAGAAATCA+GGG 0.505208 1_4:+41812248 None:intergenic
ACGGTGAATGTTCCGAGAAA+GGG 0.505569 1_4:-41816700 Msa0163550:CDS
AAGAGAAACCTGAGAAGTTG+TGG 0.506292 1_4:+41817320 None:intergenic
TTGCAGGCTGGAATGGGTGG+TGG 0.508649 1_4:-41815142 Msa0163550:intron
TAGTGAGAGTAATTACAATC+AGG 0.509905 1_4:-41816629 Msa0163550:CDS
GCAGATGTAGAAAAGGGTCT+TGG 0.517589 1_4:+41816761 None:intergenic
CTTATTCAAATATGTTAACA+AGG 0.520626 1_4:+41812011 None:intergenic
AATCGGAGCACCACCTGTGC+CGG 0.521073 1_4:+41815117 None:intergenic
TCAGGGGTTATTAATAACAT+TGG 0.523440 1_4:-41812145 Msa0163550:three_prime_UTR
AGCTTGTACTCCCTCCGTCC+CGG 0.527715 1_4:-41811982 Msa0163550:intron
GGTGGTGGAACCGGCACAGG+TGG 0.528595 1_4:-41815127 Msa0163550:CDS
TCTATACCAATATCCAGTAA+AGG 0.530736 1_4:+41814401 None:intergenic
TCAATGGGTATACTGACTGT+TGG 0.536448 1_4:-41815076 Msa0163550:CDS
TGTGTGTTCAAGGGAAAACA+AGG 0.539311 1_4:-41814457 Msa0163550:intron
CAGCATTCATTCCCATCTCA+GGG 0.540119 1_4:+41816413 None:intergenic
AGAGAAACCTGAGAAGTTGT+GGG 0.543504 1_4:+41817321 None:intergenic
CCTCTAAGCATCGAAACCTC+AGG 0.546323 1_4:+41816736 None:intergenic
CGAGCTATAATGGCCAATGC+TGG 0.546952 1_4:-41814698 Msa0163550:CDS
TACTGGATATTGGTATAGAG+AGG 0.547814 1_4:-41814397 Msa0163550:CDS
CAGAGAGTCGATTGAAGAGG+CGG 0.548139 1_4:-41816380 Msa0163550:CDS
CAGGATGCAGATGTAGAAAA+GGG 0.548436 1_4:+41816755 None:intergenic
GGTTCTTCACTGATGGGGAT+AGG 0.549568 1_4:-41814677 Msa0163550:CDS
GTCAGATATTCCGGGACGGA+GGG 0.550311 1_4:+41811972 None:intergenic
CATCAGTGAAGAACCAGCAT+TGG 0.554126 1_4:+41814685 None:intergenic
GATTTGAATTATACCTGTAG+TGG 0.554427 1_4:+41812423 None:intergenic
GCAGAAGAGTATTAAACCCT+AGG 0.555930 1_4:+41812211 None:intergenic
ACAGACTAGTCAGCTCACTC+AGG 0.564624 1_4:-41812338 Msa0163550:intron
GCTGGTGTTGCAAAGTCAAT+GGG 0.565632 1_4:-41815091 Msa0163550:CDS
TTCTCAATCTACCCCTGTAA+CGG 0.573127 1_4:-41814924 Msa0163550:CDS
AGATATATCCCCTAAGCTCT+CGG 0.575625 1_4:+41816651 None:intergenic
AGATCCATTCAAGCACAAGA+AGG 0.582161 1_4:-41815016 Msa0163550:CDS
CTTACGCGAGGTCTTGGAGC+TGG 0.582616 1_4:-41816442 Msa0163550:CDS
ACATGAAGAGAAGCCACTAC+AGG 0.584372 1_4:-41812436 Msa0163550:intron
ATGATAGAGAGTTCGATGCA+TGG 0.590175 1_4:-41816553 Msa0163550:CDS
AGGACGCTCACGCTATCCTA+GGG 0.592290 1_4:-41812227 Msa0163550:CDS
ACTGGATATTGGTATAGAGA+GGG 0.593490 1_4:-41814396 Msa0163550:CDS
GGTCAGATATTCCGGGACGG+AGG 0.593751 1_4:+41811971 None:intergenic
AAATGAACAATGAGCAAAGG+TGG 0.595670 1_4:-41817389 Msa0163550:exon
AGCTGGTGGTAACCCTGAGA+TGG 0.605521 1_4:-41816425 Msa0163550:CDS
AAGCAGAGAGTCGATTGAAG+AGG 0.606090 1_4:-41816383 Msa0163550:CDS
ACGCGAGGTCTTGGAGCTGG+TGG 0.612340 1_4:-41816439 Msa0163550:CDS
TAGAGGTGAGGCGAGTAGCA+CGG 0.614398 1_4:-41816719 Msa0163550:CDS
CTTACTTGACCAGTAAGTGA+AGG 0.622903 1_4:+41813281 None:intergenic
CTGAGTGCAGATCCCTGGGA+TGG 0.627247 1_4:-41814744 Msa0163550:intron
ATGCTGGTTCTTCACTGATG+GGG 0.629953 1_4:-41814682 Msa0163550:CDS
CCATCATCAGAGAACGAGGA+AGG 0.634743 1_4:+41812286 None:intergenic
CCAATGCTATAAATTCAGCA+GGG 0.638400 1_4:-41816939 Msa0163550:CDS
GGTTTCGATGCTTAGAGGTG+AGG 0.639570 1_4:-41816731 Msa0163550:CDS
GCTGGTGGTAACCCTGAGAT+GGG 0.642398 1_4:-41816424 Msa0163550:CDS
AACCGGATTCAAGCGTCAAG+AGG 0.644965 1_4:-41812460 Msa0163550:CDS
AATCAACATTTACCATCCCA+GGG 0.657201 1_4:+41814732 None:intergenic
ATTGAATGCTTCCGTTACAG+GGG 0.665540 1_4:+41814913 None:intergenic
CAGACTAGTCAGCTCACTCA+GGG 0.667175 1_4:-41812337 Msa0163550:CDS
GCTGATGATATTCTTCGACA+GGG 0.667848 1_4:-41814887 Msa0163550:CDS
GTGTGTTCAAGGGAAAACAA+GGG 0.669673 1_4:-41814456 Msa0163550:intron
AGAGGGCTACTGGAATTGTG+TGG 0.670337 1_4:-41814379 Msa0163550:CDS
CAATGCTATAAATTCAGCAG+GGG 0.676383 1_4:-41816938 Msa0163550:CDS
GGATTTGTCCGAGAGCTTAG+GGG 0.679587 1_4:-41816659 Msa0163550:CDS
AGAAGTTATCTACGACCTCG+TGG 0.681487 1_4:-41813342 Msa0163550:CDS
GTTCCAAACCAATCTGCAGA+CGG 0.682388 1_4:+41816464 None:intergenic
ATGGGTCAGATATTCCGGGA+CGG 0.686508 1_4:+41811968 None:intergenic
TTGTGTGGAACATAACTGGT+GGG 0.692106 1_4:-41814364 Msa0163550:CDS
ACTACCATCATCAGAGAACG+AGG 0.692979 1_4:+41812282 None:intergenic
AGACGGTTCTCAGGAAACAC+AGG 0.693113 1_4:+41816481 None:intergenic
ATTGGTTTGGAACTTACGCG+AGG 0.698954 1_4:-41816454 Msa0163550:CDS
AGGAGGTGGTGGATCTAACG+CGG 0.701552 1_4:-41816584 Msa0163550:CDS
AATTAGCACTAGGGTCCACG+AGG 0.745457 1_4:+41813327 None:intergenic
ATTGTGTGGAACATAACTGG+TGG 0.767709 1_4:-41814365 Msa0163550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAATTATATTTTACATT+AGG - chr1_4:41812781-41812800 Msa0163550:intron 10.0%
!! TACAAAATTATAAAAGAAAA+TGG - chr1_4:41813632-41813651 Msa0163550:intron 10.0%
!!! TATTTTTCATTATTCTAATA+TGG - chr1_4:41814486-41814505 Msa0163550:intron 10.0%
!! CTAATTAATTATTCAATTAA+AGG - chr1_4:41815049-41815068 Msa0163550:CDS 10.0%
!! TACTCTAATAAATATTAAAA+TGG - chr1_4:41815142-41815161 Msa0163550:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr1_4:41817257-41817276 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1_4:41817258-41817277 None:intergenic 10.0%
!!! AAAGTTTTTTTTTCATAAAA+AGG + chr1_4:41817401-41817420 None:intergenic 10.0%
!! TTATACACAAAAAATGAAAT+TGG + chr1_4:41811903-41811922 None:intergenic 15.0%
!! TAATGATAGTTTAACATTAA+TGG - chr1_4:41811943-41811962 Msa0163550:intron 15.0%
!! AATGATAGTTTAACATTAAT+GGG - chr1_4:41811944-41811963 Msa0163550:intron 15.0%
!!! AAAAATTTTGATAGCAAAAT+TGG - chr1_4:41812205-41812224 Msa0163550:exon 15.0%
!! AAATATTAGTATATGTGTTA+GGG - chr1_4:41812856-41812875 Msa0163550:intron 15.0%
!!! AACACAAGATAATATTTTTT+TGG + chr1_4:41813763-41813782 None:intergenic 15.0%
!!! TCCAAATTTTGAAAAATTTA+GGG + chr1_4:41813833-41813852 None:intergenic 15.0%
!!! TTCCAAATTTTGAAAAATTT+AGG + chr1_4:41813834-41813853 None:intergenic 15.0%
!!! TCATTTTAATTTTCAAGTTT+AGG + chr1_4:41813904-41813923 None:intergenic 15.0%
!!! TTTTGAACTTCATATATTAT+TGG - chr1_4:41814569-41814588 Msa0163550:intron 15.0%
!! ATTAATTATTCAATTAAAGG+AGG - chr1_4:41815052-41815071 Msa0163550:CDS 15.0%
!! CAATCAAGATTAAATAAAAT+AGG - chr1_4:41815118-41815137 Msa0163550:CDS 15.0%
!! ACTAATTGCAATATAAAATA+TGG + chr1_4:41815459-41815478 None:intergenic 15.0%
!! AATCATTTATGAATTTCTTA+TGG + chr1_4:41816024-41816043 None:intergenic 15.0%
!! AATTCATAAATGATTTGAAA+TGG - chr1_4:41816029-41816048 Msa0163550:intron 15.0%
!! TCATTTGATGAATATATAAT+CGG - chr1_4:41816338-41816357 Msa0163550:intron 15.0%
!!! GACATTTTTTTTTAGAAAAT+GGG + chr1_4:41817123-41817142 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr1_4:41817192-41817211 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr1_4:41817193-41817212 None:intergenic 15.0%
!! AAAGTGAAATATATTGTATT+GGG + chr1_4:41817233-41817252 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1_4:41817256-41817275 None:intergenic 15.0%
!! TTAAGTCACTAATAACAAAA+GGG + chr1_4:41811926-41811945 None:intergenic 20.0%
!! ATTAAGTCACTAATAACAAA+AGG + chr1_4:41811927-41811946 None:intergenic 20.0%
!! TGCATTTAAGCAAAAATAAA+AGG + chr1_4:41811972-41811991 None:intergenic 20.0%
!! TGTTCAATTAATTCCAATAA+TGG - chr1_4:41812271-41812290 Msa0163550:CDS 20.0%
!! TATTTGTAAATCATGTACAA+CGG + chr1_4:41812841-41812860 None:intergenic 20.0%
!! CAAATATTAGTATATGTGTT+AGG - chr1_4:41812855-41812874 Msa0163550:intron 20.0%
!! TAAAATAAGTCAATGTTTGA+GGG + chr1_4:41812889-41812908 None:intergenic 20.0%
!! ATAAAATAAGTCAATGTTTG+AGG + chr1_4:41812890-41812909 None:intergenic 20.0%
!! TAGTACAAAATATCAAATAG+CGG - chr1_4:41813005-41813024 Msa0163550:intron 20.0%
!! TCTGATATCAAATACAAATT+TGG - chr1_4:41813290-41813309 Msa0163550:CDS 20.0%
!! AATACAAATTTGGTTATTTG+TGG - chr1_4:41813300-41813319 Msa0163550:CDS 20.0%
!!! ATATTTTCTGAAAGAAAACA+GGG + chr1_4:41813428-41813447 None:intergenic 20.0%
!!! AATATTTTCTGAAAGAAAAC+AGG + chr1_4:41813429-41813448 None:intergenic 20.0%
!!! ATTTTCAGAAACTTTCAAAA+TGG + chr1_4:41813599-41813618 None:intergenic 20.0%
!! AATTATAAAAGAAAATGGTG+AGG - chr1_4:41813637-41813656 Msa0163550:intron 20.0%
!!! ACAAGATAATATTTTTTTGG+TGG + chr1_4:41813760-41813779 None:intergenic 20.0%
!! ATTATCTTGTGTTTATTAGT+AGG - chr1_4:41813770-41813789 Msa0163550:intron 20.0%
!! TTATCTTGTGTTTATTAGTA+GGG - chr1_4:41813771-41813790 Msa0163550:intron 20.0%
!!! ACCCTAAATTTTTCAAAATT+TGG - chr1_4:41813829-41813848 Msa0163550:intron 20.0%
!!! AAATTAAAATGAACTTTTGC+AGG - chr1_4:41813912-41813931 Msa0163550:intron 20.0%
!! TAAAAAAACAACAAAGAGAT+GGG + chr1_4:41814826-41814845 None:intergenic 20.0%
!!! TGTTTCAAATTTTAAAGGAA+CGG + chr1_4:41814863-41814882 None:intergenic 20.0%
!! GATTCAAATTTAATAGACAA+GGG + chr1_4:41814926-41814945 None:intergenic 20.0%
!! AGATTCAAATTTAATAGACA+AGG + chr1_4:41814927-41814946 None:intergenic 20.0%
!! AGAAACATTTAAAGAAATCA+AGG + chr1_4:41815088-41815107 None:intergenic 20.0%
!! TAATAAATATTAAAATGGCC+TGG - chr1_4:41815147-41815166 Msa0163550:intron 20.0%
!! GAAATCAATATGTACTATTT+AGG - chr1_4:41815295-41815314 Msa0163550:intron 20.0%
!! AAAAACTATTGCATACAAAA+GGG + chr1_4:41815677-41815696 None:intergenic 20.0%
!! TAAAAACTATTGCATACAAA+AGG + chr1_4:41815678-41815697 None:intergenic 20.0%
!!! TTTTTAATAGAATCGTTTAC+AGG - chr1_4:41815692-41815711 Msa0163550:intron 20.0%
!! CAAAAATTAAATTAGCACTA+GGG + chr1_4:41815755-41815774 None:intergenic 20.0%
!! TAAATTGCACAATTCATAAA+CGG + chr1_4:41815915-41815934 None:intergenic 20.0%
!!! AAGTATTTATTTTTTCCGTT+TGG + chr1_4:41816236-41816255 None:intergenic 20.0%
!! GTAAAAAAGATTTACATTGT+CGG - chr1_4:41816500-41816519 Msa0163550:CDS 20.0%
!! CTATATTAAATCAAATGACA+TGG + chr1_4:41816570-41816589 None:intergenic 20.0%
!!! CATGTCATTTGATTTAATAT+AGG - chr1_4:41816568-41816587 Msa0163550:CDS 20.0%
!! TGAAGTAAAAAATTATGCAT+TGG + chr1_4:41816908-41816927 None:intergenic 20.0%
!!! AATGCATAATTTTTTACTTC+AGG - chr1_4:41816907-41816926 Msa0163550:CDS 20.0%
!!! ATGCATAATTTTTTACTTCA+GGG - chr1_4:41816908-41816927 Msa0163550:CDS 20.0%
!! CTTATTCAAATATGTTAACA+AGG + chr1_4:41817062-41817081 None:intergenic 20.0%
!!! GGACATTTTTTTTTAGAAAA+TGG + chr1_4:41817124-41817143 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr1_4:41817160-41817179 None:intergenic 20.0%
!! GAAAGTGAAATATATTGTAT+TGG + chr1_4:41817234-41817253 None:intergenic 20.0%
! AAAAAATGAACAATGAGCAA+AGG - chr1_4:41811678-41811697 Msa0163550:three_prime_UTR 25.0%
! AAAAAGAGTAAACAACATTG+CGG + chr1_4:41811805-41811824 None:intergenic 25.0%
! TTGGTGAAATAACAAATAGT+TGG + chr1_4:41811884-41811903 None:intergenic 25.0%
!!! TTATTTTTGCTTAAATGCAC+AGG - chr1_4:41811973-41811992 Msa0163550:intron 25.0%
!!! GTTTTGGAAGAAAATTTTCT+GGG - chr1_4:41811995-41812014 Msa0163550:three_prime_UTR 25.0%
!! AAGAAAATTTTCTGGGTAAA+TGG - chr1_4:41812002-41812021 Msa0163550:three_prime_UTR 25.0%
!! AATGGAAAGTTTGAATCTTT+TGG - chr1_4:41812020-41812039 Msa0163550:three_prime_UTR 25.0%
!! ATGGAAAGTTTGAATCTTTT+GGG - chr1_4:41812021-41812040 Msa0163550:three_prime_UTR 25.0%
! GAATATATGGAGAAAACTTA+GGG + chr1_4:41812048-41812067 None:intergenic 25.0%
! TGAATATATGGAGAAAACTT+AGG + chr1_4:41812049-41812068 None:intergenic 25.0%
!! CCATTTTGAACTTCAAAATT+GGG + chr1_4:41812081-41812100 None:intergenic 25.0%
!! ACCATTTTGAACTTCAAAAT+TGG + chr1_4:41812082-41812101 None:intergenic 25.0%
!! GATAGCAAAATTGGATTTTT+AGG - chr1_4:41812214-41812233 Msa0163550:exon 25.0%
! ATGATATGAACTACCATTAT+TGG + chr1_4:41812287-41812306 None:intergenic 25.0%
! AAGATTAAAGTTATTGGTGT+AGG - chr1_4:41812466-41812485 Msa0163550:CDS 25.0%
!! GGAGTTTTCTTAGTATTTAT+CGG - chr1_4:41812802-41812821 Msa0163550:intron 25.0%
!! ATTAGTTTCCTTTAAAGACA+AGG - chr1_4:41813361-41813380 Msa0163550:intron 25.0%
!! TTAGTTTCCTTTAAAGACAA+GGG - chr1_4:41813362-41813381 Msa0163550:intron 25.0%
! TATCTTGTGTTTATTAGTAG+GGG - chr1_4:41813772-41813791 Msa0163550:intron 25.0%
! ACATGAATACAAGAAGTAAA+CGG - chr1_4:41813806-41813825 Msa0163550:intron 25.0%
! AAATAAAAGCAGTGTAGAAT+TGG + chr1_4:41814471-41814490 None:intergenic 25.0%
!! TAATATGGAAGTGCAATTTA+AGG - chr1_4:41814501-41814520 Msa0163550:intron 25.0%
! GAAAAAAAAAAGAACAGCAT+GGG + chr1_4:41814804-41814823 None:intergenic 25.0%
! CTAAAAAAACAACAAAGAGA+TGG + chr1_4:41814827-41814846 None:intergenic 25.0%
!! CACGATGTTTCAAATTTTAA+AGG + chr1_4:41814868-41814887 None:intergenic 25.0%
!!! CTTTAAAATTTGAAACATCG+TGG - chr1_4:41814866-41814885 Msa0163550:CDS 25.0%
!! CAATTAGTATGAATTTTCTG+TGG - chr1_4:41815471-41815490 Msa0163550:intron 25.0%
! TTCACAGAAAAGTAAAACTA+TGG + chr1_4:41815556-41815575 None:intergenic 25.0%
! CCAAAAATTAAATTAGCACT+AGG + chr1_4:41815756-41815775 None:intergenic 25.0%
!!! CCTAGTGCTAATTTAATTTT+TGG - chr1_4:41815753-41815772 Msa0163550:intron 25.0%
! TGCTAAACACTATTATAACT+AGG + chr1_4:41815985-41816004 None:intergenic 25.0%
!! CTTTTCTCTGAATATTACTT+GGG + chr1_4:41816211-41816230 None:intergenic 25.0%
!!! TATTTTGTTTAGCTGGTATT+TGG - chr1_4:41816295-41816314 Msa0163550:intron 25.0%
!!! ATTTTGTTTAGCTGGTATTT+GGG - chr1_4:41816296-41816315 Msa0163550:intron 25.0%
! GTGAATGAATTAAATCCATA+TGG - chr1_4:41816524-41816543 Msa0163550:CDS 25.0%
! ATCAGAATTATGAGTATGAA+TGG + chr1_4:41816699-41816718 None:intergenic 25.0%
!! CTTTCTTCTTTAAGAAATCA+GGG + chr1_4:41816825-41816844 None:intergenic 25.0%
!!! TGCATAATTTTTTACTTCAG+GGG - chr1_4:41816909-41816928 Msa0163550:CDS 25.0%
!! GTTATTAATAACATTGGTCT+AGG - chr1_4:41816931-41816950 Msa0163550:CDS 25.0%
! AAGGAAAATGTTCATAAAAC+AGG + chr1_4:41817382-41817401 None:intergenic 25.0%
! GAAAACTGCAAAAGGTTTTA+CGG + chr1_4:41811716-41811735 None:intergenic 30.0%
TTTGATTGGAAAACTGCAAA+AGG + chr1_4:41811724-41811743 None:intergenic 30.0%
!!! GGTTTTGGAAGAAAATTTTC+TGG - chr1_4:41811994-41812013 Msa0163550:three_prime_UTR 30.0%
GGGATATGTAAGTGAATATA+TGG + chr1_4:41812061-41812080 None:intergenic 30.0%
!!! CCCAATTTTGAAGTTCAAAA+TGG - chr1_4:41812078-41812097 Msa0163550:three_prime_UTR 30.0%
TAGTGAGAGTAATTACAATC+AGG - chr1_4:41812441-41812460 Msa0163550:CDS 30.0%
ATTAAAGTTATTGGTGTAGG+AGG - chr1_4:41812469-41812488 Msa0163550:CDS 30.0%
AGCTACTATATGACATCATT+GGG + chr1_4:41812960-41812979 None:intergenic 30.0%
TAGCTACTATATGACATCAT+TGG + chr1_4:41812961-41812980 None:intergenic 30.0%
AGTTATCAGTAGTTCAATCA+AGG + chr1_4:41813105-41813124 None:intergenic 30.0%
CAATTGTGATAGAGAAAAGA+TGG - chr1_4:41813522-41813541 Msa0163550:intron 30.0%
TAGAGAAAAGATGGAATGAA+AGG - chr1_4:41813531-41813550 Msa0163550:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr1_4:41813719-41813738 Msa0163550:intron 30.0%
!!! AATATTTTTTTGGTGGTGTC+CGG + chr1_4:41813753-41813772 None:intergenic 30.0%
TTCGTCCTTCAAATGAAAAA+GGG + chr1_4:41814032-41814051 None:intergenic 30.0%
TTTCGTCCTTCAAATGAAAA+AGG + chr1_4:41814033-41814052 None:intergenic 30.0%
AAAGATAATGCATGAACAAC+AGG + chr1_4:41814265-41814284 None:intergenic 30.0%
!!! TGACATTTTTTGTGTGTTCA+AGG - chr1_4:41814603-41814622 Msa0163550:intron 30.0%
!!! GACATTTTTTGTGTGTTCAA+GGG - chr1_4:41814604-41814623 Msa0163550:intron 30.0%
TCTATACCAATATCCAGTAA+AGG + chr1_4:41814672-41814691 None:intergenic 30.0%
GGAAAAAAAAAAGAACAGCA+TGG + chr1_4:41814805-41814824 None:intergenic 30.0%
!! TCAAATTTTAAAGGAACGGA+GGG + chr1_4:41814859-41814878 None:intergenic 30.0%
!! TTCAAATTTTAAAGGAACGG+AGG + chr1_4:41814860-41814879 None:intergenic 30.0%
TCAAATTTAATAGACAAGGG+TGG + chr1_4:41814923-41814942 None:intergenic 30.0%
CAAAATATGAAAAGGAAACC+TGG + chr1_4:41814985-41815004 None:intergenic 30.0%
! CAGGTTTCCTTTTCATATTT+TGG - chr1_4:41814983-41815002 Msa0163550:CDS 30.0%
TAAATATTAAAATGGCCTGG+TGG - chr1_4:41815150-41815169 Msa0163550:intron 30.0%
TCTTATAGTCATGTATCCAT+TGG - chr1_4:41815422-41815441 Msa0163550:intron 30.0%
TATGGAAGACATTATTCCAA+TGG + chr1_4:41815441-41815460 None:intergenic 30.0%
TCTGTCTATTAAACTCATCA+TGG - chr1_4:41815641-41815660 Msa0163550:intron 30.0%
ACAAGTGTATAAAGATCAGT+AGG - chr1_4:41816057-41816076 Msa0163550:intron 30.0%
! CTTTGAGGACTAAATATTTG+TGG + chr1_4:41816148-41816167 None:intergenic 30.0%
! AATGTCCTTTTATCACTCTA+TGG - chr1_4:41816176-41816195 Msa0163550:intron 30.0%
! TGAATATTACTTGGGTTTTG+TGG + chr1_4:41816203-41816222 None:intergenic 30.0%
! CCTTTTCTCTGAATATTACT+TGG + chr1_4:41816212-41816231 None:intergenic 30.0%
CCAAGTAATATTCAGAGAAA+AGG - chr1_4:41816209-41816228 Msa0163550:intron 30.0%
CCAGCTAAACAAAATATAAC+CGG + chr1_4:41816291-41816310 None:intergenic 30.0%
!! TTTTGTTTAGCTGGTATTTG+GGG - chr1_4:41816297-41816316 Msa0163550:intron 30.0%
CATGTTGATCATATTCCATA+TGG + chr1_4:41816542-41816561 None:intergenic 30.0%
CATATGGAATATGATCAACA+TGG - chr1_4:41816540-41816559 Msa0163550:CDS 30.0%
AGCATAACATTAATTGCAAC+CGG - chr1_4:41816593-41816612 Msa0163550:CDS 30.0%
AATTATGAGTATGAATGGCA+TGG + chr1_4:41816694-41816713 None:intergenic 30.0%
! CCTTTCTTCTTTAAGAAATC+AGG + chr1_4:41816826-41816845 None:intergenic 30.0%
CCTGATTTCTTAAAGAAGAA+AGG - chr1_4:41816823-41816842 Msa0163550:CDS 30.0%
TCAGGGGTTATTAATAACAT+TGG - chr1_4:41816925-41816944 Msa0163550:CDS 30.0%
! AAGAGTTGTTCATACAGTTT+TGG - chr1_4:41816995-41817014 Msa0163550:CDS 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG + chr1_4:41817145-41817164 None:intergenic 30.0%
! TTGAAATGGCTCAGTTATTT+TGG + chr1_4:41817146-41817165 None:intergenic 30.0%
!! CAGAGCTTGTTATAATTCTT+TGG - chr1_4:41817356-41817375 Msa0163550:CDS 30.0%
AAATGAACAATGAGCAAAGG+TGG - chr1_4:41811681-41811700 Msa0163550:three_prime_UTR 35.0%
! GAGAATGAAGAAAGCGTAAT+TGG + chr1_4:41811783-41811802 None:intergenic 35.0%
! TTGCTTAAATGCACAGGTTT+TGG - chr1_4:41811979-41811998 Msa0163550:intron 35.0%
TCCAATGCTATAAATTCAGC+AGG - chr1_4:41812130-41812149 Msa0163550:three_prime_UTR 35.0%
CCAATGCTATAAATTCAGCA+GGG - chr1_4:41812131-41812150 Msa0163550:three_prime_UTR 35.0%
CAATGCTATAAATTCAGCAG+GGG - chr1_4:41812132-41812151 Msa0163550:three_prime_UTR 35.0%
! GGGGTGTTTAATGTTATTAG+AGG - chr1_4:41812151-41812170 Msa0163550:three_prime_UTR 35.0%
TTAGGTAGTGAGAGAAAGTT+AGG - chr1_4:41812232-41812251 Msa0163550:CDS 35.0%
AAACTAGAACTACCCTTTCT+CGG + chr1_4:41812385-41812404 None:intergenic 35.0%
!! AGAAAGGGTAGTTCTAGTTT+GGG - chr1_4:41812385-41812404 Msa0163550:intron 35.0%
CAGGCGAAGATTAAAGTTAT+TGG - chr1_4:41812460-41812479 Msa0163550:CDS 35.0%
TTCAAATGTTGCTGTGAAGT+AGG + chr1_4:41813053-41813072 None:intergenic 35.0%
TGTTGATCCCTTGTCTTTAA+AGG + chr1_4:41813372-41813391 None:intergenic 35.0%
!!! ATATTTTTTTGGTGGTGTCC+GGG + chr1_4:41813752-41813771 None:intergenic 35.0%
! TAAAATGAACTTTTGCAGGC+TGG - chr1_4:41813916-41813935 Msa0163550:intron 35.0%
TTTGCAACACCAGCAATAAT+CGG + chr1_4:41813973-41813992 None:intergenic 35.0%
TCGTCCTTCAAATGAAAAAG+GGG + chr1_4:41814031-41814050 None:intergenic 35.0%
AATTCCTTCTTGTGCTTGAA+TGG + chr1_4:41814061-41814080 None:intergenic 35.0%
! GCAGTTAATAGCTTGTCATT+TGG + chr1_4:41814123-41814142 None:intergenic 35.0%
AATCAACATTTACCATCCCA+GGG + chr1_4:41814341-41814360 None:intergenic 35.0%
AAATCAACATTTACCATCCC+AGG + chr1_4:41814342-41814361 None:intergenic 35.0%
TGCTGATATTCGAGCTATAA+TGG - chr1_4:41814362-41814381 Msa0163550:CDS 35.0%
TACTGGATATTGGTATAGAG+AGG - chr1_4:41814673-41814692 Msa0163550:CDS 35.0%
ACTGGATATTGGTATAGAGA+GGG - chr1_4:41814674-41814693 Msa0163550:CDS 35.0%
! TTTGAAACATCGTGGTACTA+TGG - chr1_4:41814874-41814893 Msa0163550:CDS 35.0%
TTGAAACATCGTGGTACTAT+GGG - chr1_4:41814875-41814894 Msa0163550:CDS 35.0%
TAATAGACAAGGGTGGATAT+AGG + chr1_4:41814916-41814935 None:intergenic 35.0%
CCACATGCCAAAATATGAAA+AGG + chr1_4:41814993-41815012 None:intergenic 35.0%
!!! CCTTTTCATATTTTGGCATG+TGG - chr1_4:41814990-41815009 Msa0163550:CDS 35.0%
! TTGCAAACTTCGACTTTTGT+TGG - chr1_4:41815581-41815600 Msa0163550:intron 35.0%
TTGGAGCTAATACTTGTTTG+AGG - chr1_4:41815600-41815619 Msa0163550:intron 35.0%
GTAATAGATCCTTCACTTAC+TGG - chr1_4:41815780-41815799 Msa0163550:intron 35.0%
TTGCACAATTCATAAACGGT+GGG + chr1_4:41815911-41815930 None:intergenic 35.0%
ATTGCACAATTCATAAACGG+TGG + chr1_4:41815912-41815931 None:intergenic 35.0%
ATAAAGATCAGTAGGTAGCT+CGG - chr1_4:41816065-41816084 Msa0163550:intron 35.0%
! GGACATTCTCTATTTCTTTG+AGG + chr1_4:41816163-41816182 None:intergenic 35.0%
ATTCAGAGAAAAGGACCAAA+CGG - chr1_4:41816218-41816237 Msa0163550:intron 35.0%
!! CCGGTTATATTTTGTTTAGC+TGG - chr1_4:41816288-41816307 Msa0163550:intron 35.0%
! AAAGAAATGCACAGAGCATT+GGG + chr1_4:41816884-41816903 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr1_4:41817110-41817129 None:intergenic 35.0%
!! AGTTGTGGGAAGCATTTGAT+TGG + chr1_4:41811738-41811757 None:intergenic 40.0%
AGAGAAACCTGAGAAGTTGT+GGG + chr1_4:41811752-41811771 None:intergenic 40.0%
AAGAGAAACCTGAGAAGTTG+TGG + chr1_4:41811753-41811772 None:intergenic 40.0%
CCCTGCTGAATTTATAGCAT+TGG + chr1_4:41812134-41812153 None:intergenic 40.0%
CAGGATGCAGATGTAGAAAA+GGG + chr1_4:41812318-41812337 None:intergenic 40.0%
TCAGGATGCAGATGTAGAAA+AGG + chr1_4:41812319-41812338 None:intergenic 40.0%
! TTTTCTACATCTGCATCCTG+AGG - chr1_4:41812318-41812337 Msa0163550:CDS 40.0%
!! GAGAAAGGGTAGTTCTAGTT+TGG - chr1_4:41812384-41812403 Msa0163550:intron 40.0%
AGATATATCCCCTAAGCTCT+CGG + chr1_4:41812422-41812441 None:intergenic 40.0%
AAAGTTATTGGTGTAGGAGG+TGG - chr1_4:41812472-41812491 Msa0163550:CDS 40.0%
ATGATAGAGAGTTCGATGCA+TGG - chr1_4:41812517-41812536 Msa0163550:intron 40.0%
CGAGTGCTTTATGCTATGTT+AGG - chr1_4:41813140-41813159 Msa0163550:intron 40.0%
CAATACCTCGTTAGACAGTA+GGG - chr1_4:41813163-41813182 Msa0163550:intron 40.0%
! GGTGTTTCTTTTAGTAGTGC+AGG - chr1_4:41813321-41813340 Msa0163550:CDS 40.0%
! GTTTCTTTTAGTAGTGCAGG+AGG - chr1_4:41813324-41813343 Msa0163550:CDS 40.0%
AGTAGATGAAAGACTCGTGT+AGG - chr1_4:41813496-41813515 Msa0163550:intron 40.0%
GTAGATGAAAGACTCGTGTA+GGG - chr1_4:41813497-41813516 Msa0163550:intron 40.0%
TATATGCAAGGTTCAAACCC+CGG - chr1_4:41813731-41813750 Msa0163550:intron 40.0%
!!! TATTTTTTTGGTGGTGTCCG+GGG + chr1_4:41813751-41813770 None:intergenic 40.0%
! TCAATGGGTATACTGACTGT+TGG - chr1_4:41813994-41814013 Msa0163550:intron 40.0%
! CAATGGGTATACTGACTGTT+GGG - chr1_4:41813995-41814014 Msa0163550:intron 40.0%
!! ACGACCCCTTTTTCATTTGA+AGG - chr1_4:41814024-41814043 Msa0163550:intron 40.0%
AGATCCATTCAAGCACAAGA+AGG - chr1_4:41814054-41814073 Msa0163550:intron 40.0%
TTCTCAATCTACCCCTGTAA+CGG - chr1_4:41814146-41814165 Msa0163550:intron 40.0%
ATTGAATGCTTCCGTTACAG+GGG + chr1_4:41814160-41814179 None:intergenic 40.0%
GATTGAATGCTTCCGTTACA+GGG + chr1_4:41814161-41814180 None:intergenic 40.0%
AGATTGAATGCTTCCGTTAC+AGG + chr1_4:41814162-41814181 None:intergenic 40.0%
TGCTGATGATATTCTTCGAC+AGG - chr1_4:41814182-41814201 Msa0163550:intron 40.0%
GCTGATGATATTCTTCGACA+GGG - chr1_4:41814183-41814202 Msa0163550:intron 40.0%
!! AATGCTGGTTCTTCACTGAT+GGG - chr1_4:41814387-41814406 Msa0163550:CDS 40.0%
! AGGCTCTTTTCTGCAATTGT+TGG - chr1_4:41814521-41814540 Msa0163550:intron 40.0%
TGTGTGTTCAAGGGAAAACA+AGG - chr1_4:41814613-41814632 Msa0163550:intron 40.0%
GTGTGTTCAAGGGAAAACAA+GGG - chr1_4:41814614-41814633 Msa0163550:intron 40.0%
TGCTATTCAGTCTCCTTTAC+TGG - chr1_4:41814656-41814675 Msa0163550:intron 40.0%
CAGTCTCCTTTACTGGATAT+TGG - chr1_4:41814663-41814682 Msa0163550:intron 40.0%
GGAATTGTGTGGAACATAAC+TGG - chr1_4:41814702-41814721 Msa0163550:CDS 40.0%
ATTGTGTGGAACATAACTGG+TGG - chr1_4:41814705-41814724 Msa0163550:CDS 40.0%
TTGTGTGGAACATAACTGGT+GGG - chr1_4:41814706-41814725 Msa0163550:CDS 40.0%
! GAGTGATCTGACTTTGTTTG+AGG - chr1_4:41814728-41814747 Msa0163550:CDS 40.0%
! ATCTGACTTTGTTTGAGGTG+AGG - chr1_4:41814733-41814752 Msa0163550:CDS 40.0%
! TCTGACTTTGTTTGAGGTGA+GGG - chr1_4:41814734-41814753 Msa0163550:CDS 40.0%
GCACAGCTGAAACATATACT+TGG + chr1_4:41814782-41814801 None:intergenic 40.0%
TATACTCTTCTCATGAAGCC+AGG - chr1_4:41814964-41814983 Msa0163550:CDS 40.0%
CTTACTTGACCAGTAAGTGA+AGG + chr1_4:41815792-41815811 None:intergenic 40.0%
ATTCATAAACGGTGGGATAG+TGG + chr1_4:41815904-41815923 None:intergenic 40.0%
CCGATTATCTTCTTCTCCTA+GGG + chr1_4:41815954-41815973 None:intergenic 40.0%
CCCTAGGAGAAGAAGATAAT+CGG - chr1_4:41815951-41815970 Msa0163550:intron 40.0%
CATCGAAATGATTCGATCTC+TGG - chr1_4:41816104-41816123 Msa0163550:intron 40.0%
GTGGTCCATAGAGTGATAAA+AGG + chr1_4:41816184-41816203 None:intergenic 40.0%
ATGAGTATGAATGGCATGGA+TGG + chr1_4:41816690-41816709 None:intergenic 40.0%
!! GCAGAAGAGTATTAAACCCT+AGG + chr1_4:41816862-41816881 None:intergenic 40.0%
CAAAGAAATGCACAGAGCAT+TGG + chr1_4:41816885-41816904 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr1_4:41817109-41817128 None:intergenic 40.0%
AATCTGTGTGAAATGAGCCA+AGG - chr1_4:41817277-41817296 Msa0163550:intron 40.0%
ATCTGTGTGAAATGAGCCAA+GGG - chr1_4:41817278-41817297 Msa0163550:intron 40.0%
!! GGAGGGAGTATTCTTGTATA+GGG - chr1_4:41817318-41817337 Msa0163550:intron 40.0%
AATGCTTCCCACAACTTCTC+AGG - chr1_4:41811742-41811761 Msa0163550:intron 45.0%
GCAGATGTAGAAAAGGGTCT+TGG + chr1_4:41812312-41812331 None:intergenic 45.0%
ACGGTGAATGTTCCGAGAAA+GGG - chr1_4:41812370-41812389 Msa0163550:intron 45.0%
AGGATTTGTCCGAGAGCTTA+GGG - chr1_4:41812410-41812429 Msa0163550:intron 45.0%
! CGATGCATGGAGTTGAGTTT+TGG - chr1_4:41812530-41812549 Msa0163550:intron 45.0%
GTTCCAAACCAATCTGCAGA+CGG + chr1_4:41812609-41812628 None:intergenic 45.0%
!! ATTGGTTTGGAACTTACGCG+AGG - chr1_4:41812616-41812635 Msa0163550:intron 45.0%
CAGCATTCATTCCCATCTCA+GGG + chr1_4:41812660-41812679 None:intergenic 45.0%
AAGCAGAGAGTCGATTGAAG+AGG - chr1_4:41812687-41812706 Msa0163550:intron 45.0%
TCGATTGAAGAGGCGGTTTA+TGG - chr1_4:41812697-41812716 Msa0163550:intron 45.0%
! TCAAAGAGCTCTAGTGAGAG+AGG + chr1_4:41812924-41812943 None:intergenic 45.0%
AAGTAGGACTACAGGGCTAT+AGG + chr1_4:41813037-41813056 None:intergenic 45.0%
TGCTGTGAAGTAGGACTACA+GGG + chr1_4:41813044-41813063 None:intergenic 45.0%
TTGCTGTGAAGTAGGACTAC+AGG + chr1_4:41813045-41813064 None:intergenic 45.0%
GCAATACCTCGTTAGACAGT+AGG - chr1_4:41813162-41813181 Msa0163550:intron 45.0%
ATTGTCCCTACTGTCTAACG+AGG + chr1_4:41813171-41813190 None:intergenic 45.0%
! ATTTGGAACAGACGTGCTTG+CGG - chr1_4:41813846-41813865 Msa0163550:intron 45.0%
! TGAACTTTTGCAGGCTGGAA+TGG - chr1_4:41813921-41813940 Msa0163550:intron 45.0%
! GAACTTTTGCAGGCTGGAAT+GGG - chr1_4:41813922-41813941 Msa0163550:intron 45.0%
!! TGCTGGTGTTGCAAAGTCAA+TGG - chr1_4:41813978-41813997 Msa0163550:intron 45.0%
!! GCTGGTGTTGCAAAGTCAAT+GGG - chr1_4:41813979-41813998 Msa0163550:intron 45.0%
CATCAGTGAAGAACCAGCAT+TGG + chr1_4:41814388-41814407 None:intergenic 45.0%
!! CAATGCTGGTTCTTCACTGA+TGG - chr1_4:41814386-41814405 Msa0163550:CDS 45.0%
!! ATGCTGGTTCTTCACTGATG+GGG - chr1_4:41814388-41814407 Msa0163550:CDS 45.0%
ATTGGTATAGAGAGGGCTAC+TGG - chr1_4:41814681-41814700 Msa0163550:CDS 45.0%
TGGTACTATGGGAAGTTGCT+AGG - chr1_4:41814886-41814905 Msa0163550:CDS 45.0%
GGTACTATGGGAAGTTGCTA+GGG - chr1_4:41814887-41814906 Msa0163550:CDS 45.0%
GTACTATGGGAAGTTGCTAG+GGG - chr1_4:41814888-41814907 Msa0163550:CDS 45.0%
! TTAAAATGGCCTGGTGGTGT+TGG - chr1_4:41815156-41815175 Msa0163550:intron 45.0%
CTAAACTAGCCCACCCAAAT+TGG + chr1_4:41815238-41815257 None:intergenic 45.0%
AGAAGTTATCTACGACCTCG+TGG - chr1_4:41815728-41815747 Msa0163550:intron 45.0%
CTTCTTCTCCTAGGGATACA+CGG + chr1_4:41815946-41815965 None:intergenic 45.0%
GCCGATTATCTTCTTCTCCT+AGG + chr1_4:41815955-41815974 None:intergenic 45.0%
TCTTGTACTGTGAGCTTCTC+CGG - chr1_4:41816269-41816288 Msa0163550:intron 45.0%
TTCCTCTTGACGCTTGAATC+CGG + chr1_4:41816615-41816634 None:intergenic 45.0%
ACATGAAGAGAAGCCACTAC+AGG - chr1_4:41816634-41816653 Msa0163550:CDS 45.0%
ATGAATGGCATGGATGGAGA+GGG + chr1_4:41816684-41816703 None:intergenic 45.0%
TATGAATGGCATGGATGGAG+AGG + chr1_4:41816685-41816704 None:intergenic 45.0%
ACTACCATCATCAGAGAACG+AGG + chr1_4:41816791-41816810 None:intergenic 45.0%
AGCCAAGGGCTCAGATAAAT+TGG - chr1_4:41817292-41817311 Msa0163550:intron 45.0%
GCCAAGGGCTCAGATAAATT+GGG - chr1_4:41817293-41817312 Msa0163550:intron 45.0%
TCCCAATTTATCTGAGCCCT+TGG + chr1_4:41817297-41817316 None:intergenic 45.0%
AGGGCTCAGATAAATTGGGA+CGG - chr1_4:41817297-41817316 Msa0163550:intron 45.0%
CTCAGATAAATTGGGACGGA+GGG - chr1_4:41817301-41817320 Msa0163550:intron 45.0%
!! CGGAGGGAGTATTCTTGTAT+AGG - chr1_4:41817317-41817336 Msa0163550:intron 45.0%
!!! TAATTTAAAAATCATATTTT+TGG + chr1_4:41815338-41815357 None:intergenic 5.0%
!! CCTCTAAGCATCGAAACCTC+AGG + chr1_4:41812337-41812356 None:intergenic 50.0%
CCTGAGGTTTCGATGCTTAG+AGG - chr1_4:41812334-41812353 Msa0163550:CDS 50.0%
GGTTTCGATGCTTAGAGGTG+AGG - chr1_4:41812339-41812358 Msa0163550:intron 50.0%
CACGGTGAATGTTCCGAGAA+AGG - chr1_4:41812369-41812388 Msa0163550:intron 50.0%
!! GGGTAGTTCTAGTTTGGGTG+AGG - chr1_4:41812390-41812409 Msa0163550:intron 50.0%
GAGGATTTGTCCGAGAGCTT+AGG - chr1_4:41812409-41812428 Msa0163550:intron 50.0%
GGATTTGTCCGAGAGCTTAG+GGG - chr1_4:41812411-41812430 Msa0163550:intron 50.0%
GTTATTGGTGTAGGAGGTGG+TGG - chr1_4:41812475-41812494 Msa0163550:CDS 50.0%
AGACGGTTCTCAGGAAACAC+AGG + chr1_4:41812592-41812611 None:intergenic 50.0%
! GAACCGTCTGCAGATTGGTT+TGG - chr1_4:41812603-41812622 Msa0163550:intron 50.0%
TTGGAACTTACGCGAGGTCT+TGG - chr1_4:41812622-41812641 Msa0163550:intron 50.0%
GCAGCATTCATTCCCATCTC+AGG + chr1_4:41812661-41812680 None:intergenic 50.0%
CAGAGAGTCGATTGAAGAGG+CGG - chr1_4:41812690-41812709 Msa0163550:intron 50.0%
GGCGGTTTATGGAGCTGATA+TGG - chr1_4:41812708-41812727 Msa0163550:intron 50.0%
AGCTCTTTGAGCTAGAAGCG+CGG - chr1_4:41812934-41812953 Msa0163550:intron 50.0%
AAGGCTGTCAGTGTTGTCGA+CGG + chr1_4:41813086-41813105 None:intergenic 50.0%
TGAGCTTAGCTCAGTCGGTA+GGG - chr1_4:41813697-41813716 Msa0163550:intron 50.0%
ACTTACTGAGTGCAGATCCC+TGG - chr1_4:41814321-41814340 Msa0163550:intron 50.0%
CTTACTGAGTGCAGATCCCT+GGG - chr1_4:41814322-41814341 Msa0163550:intron 50.0%
CGAGCTATAATGGCCAATGC+TGG - chr1_4:41814372-41814391 Msa0163550:CDS 50.0%
GGTTCTTCACTGATGGGGAT+AGG - chr1_4:41814393-41814412 Msa0163550:CDS 50.0%
ATGGGGATAGGAACTGCAAC+TGG - chr1_4:41814405-41814424 Msa0163550:CDS 50.0%
AGAGGGCTACTGGAATTGTG+TGG - chr1_4:41814691-41814710 Msa0163550:CDS 50.0%
AATTAGCACTAGGGTCCACG+AGG + chr1_4:41815746-41815765 None:intergenic 50.0%
CAGCATTTCCGTGTATCCCT+AGG - chr1_4:41815935-41815954 Msa0163550:intron 50.0%
AACCGGATTCAAGCGTCAAG+AGG - chr1_4:41816610-41816629 Msa0163550:CDS 50.0%
TGGATGGAGAGGGAATGAGA+GGG + chr1_4:41816674-41816693 None:intergenic 50.0%
ATGGATGGAGAGGGAATGAG+AGG + chr1_4:41816675-41816694 None:intergenic 50.0%
! ACAGACTAGTCAGCTCACTC+AGG - chr1_4:41816732-41816751 Msa0163550:CDS 50.0%
! CAGACTAGTCAGCTCACTCA+GGG - chr1_4:41816733-41816752 Msa0163550:CDS 50.0%
CCATCATCAGAGAACGAGGA+AGG + chr1_4:41816787-41816806 None:intergenic 50.0%
CCTTCCTCGTTCTCTGATGA+TGG - chr1_4:41816784-41816803 Msa0163550:CDS 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr1_4:41817105-41817124 None:intergenic 50.0%
GCTCAGATAAATTGGGACGG+AGG - chr1_4:41817300-41817319 Msa0163550:intron 50.0%
TAGAGGTGAGGCGAGTAGCA+CGG - chr1_4:41812351-41812370 Msa0163550:intron 55.0%
!! AGGAGGTGGTGGATCTAACG+CGG - chr1_4:41812486-41812505 Msa0163550:intron 55.0%
CCAATCTGCAGACGGTTCTC+AGG + chr1_4:41812601-41812620 None:intergenic 55.0%
CCTGAGAACCGTCTGCAGAT+TGG - chr1_4:41812598-41812617 Msa0163550:intron 55.0%
AGCTGGTGGTAACCCTGAGA+TGG - chr1_4:41812645-41812664 Msa0163550:intron 55.0%
GCTGGTGGTAACCCTGAGAT+GGG - chr1_4:41812646-41812665 Msa0163550:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+CGG - chr1_4:41813692-41813711 Msa0163550:intron 55.0%
GTGAGCTTAGCTCAGTCGGT+AGG - chr1_4:41813696-41813715 Msa0163550:intron 55.0%
! CTTTTGCAGGCTGGAATGGG+TGG - chr1_4:41813925-41813944 Msa0163550:intron 55.0%
GGTGGTGCTCCGATTATTGC+TGG - chr1_4:41813961-41813980 Msa0163550:intron 55.0%
! ATTCTTCGACAGGGCGTTCG+TGG - chr1_4:41814192-41814211 Msa0163550:intron 55.0%
!! GTGGTGTTGGCTTGAGACCT+TGG - chr1_4:41815169-41815188 Msa0163550:intron 55.0%
! TTGGGGAGGAGCATACTCCA+AGG + chr1_4:41815189-41815208 None:intergenic 55.0%
TTGGAGTATGCTCCTCCCCA+AGG - chr1_4:41815188-41815207 Msa0163550:intron 55.0%
AGGCTCGAACCAGAGACCTT+GGG + chr1_4:41815207-41815226 None:intergenic 55.0%
!! AGCCTCCTCGGTGCCAATTT+GGG - chr1_4:41815222-41815241 Msa0163550:intron 55.0%
!! TCCTCGGTGCCAATTTGGGT+GGG - chr1_4:41815226-41815245 Msa0163550:intron 55.0%
AAGGACGCTCACGCTATCCT+AGG - chr1_4:41816842-41816861 Msa0163550:CDS 55.0%
AGGACGCTCACGCTATCCTA+GGG - chr1_4:41816843-41816862 Msa0163550:CDS 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr1_4:41817101-41817120 None:intergenic 55.0%
CTTACGCGAGGTCTTGGAGC+TGG - chr1_4:41812628-41812647 Msa0163550:intron 60.0%
CCGACTGAGCTAAGCTCACG+AGG + chr1_4:41813695-41813714 None:intergenic 60.0%
TTGCAGGCTGGAATGGGTGG+TGG - chr1_4:41813928-41813947 Msa0163550:intron 60.0%
!! GCTGGAATGGGTGGTGGAAC+CGG - chr1_4:41813934-41813953 Msa0163550:intron 60.0%
! AATCGGAGCACCACCTGTGC+CGG + chr1_4:41813956-41813975 None:intergenic 60.0%
CTGAGTGCAGATCCCTGGGA+TGG - chr1_4:41814326-41814345 Msa0163550:intron 60.0%
GGTCTCAAGCCAACACCACC+AGG + chr1_4:41815168-41815187 None:intergenic 60.0%
ATGCTCCTCCCCAAGGTCTC+TGG - chr1_4:41815195-41815214 Msa0163550:intron 60.0%
TCGAACCAGAGACCTTGGGG+AGG + chr1_4:41815203-41815222 None:intergenic 60.0%
GGCTCGAACCAGAGACCTTG+GGG + chr1_4:41815206-41815225 None:intergenic 60.0%
GAGGCTCGAACCAGAGACCT+TGG + chr1_4:41815208-41815227 None:intergenic 60.0%
! GTCTCTGGTTCGAGCCTCCT+CGG - chr1_4:41815210-41815229 Msa0163550:intron 60.0%
!! GAGCCTCCTCGGTGCCAATT+TGG - chr1_4:41815221-41815240 Msa0163550:intron 60.0%
! CACCCAAATTGGCACCGAGG+AGG + chr1_4:41815227-41815246 None:intergenic 60.0%
!! CTCCTCGGTGCCAATTTGGG+TGG - chr1_4:41815225-41815244 Msa0163550:intron 60.0%
AGCTTGTACTCCCTCCGTCC+CGG - chr1_4:41817088-41817107 Msa0163550:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr1_4:41817102-41817121 None:intergenic 60.0%
ACGCGAGGTCTTGGAGCTGG+TGG - chr1_4:41812631-41812650 Msa0163550:intron 65.0%
!! ATGGGTGGTGGAACCGGCAC+AGG - chr1_4:41813940-41813959 Msa0163550:intron 65.0%
GCCCACCCAAATTGGCACCG+AGG + chr1_4:41815230-41815249 None:intergenic 65.0%
!! GGTGGTGGAACCGGCACAGG+TGG - chr1_4:41813943-41813962 Msa0163550:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41811666 41817426 41811666 ID=Msa0163550;Name=Msa0163550
chr1_4 mRNA 41811666 41817426 41811666 ID=Msa0163550-mRNA-1;Parent=Msa0163550;Name=Msa0163550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=24|1|1|1|0.66|0.5|10|327|536
chr1_4 exon 41811666 41811753 41811666 ID=Msa0163550-mRNA-1:exon:12113;Parent=Msa0163550-mRNA-1
chr1_4 exon 41811983 41812356 41811983 ID=Msa0163550-mRNA-1:exon:12112;Parent=Msa0163550-mRNA-1
chr1_4 exon 41812437 41812502 41812437 ID=Msa0163550-mRNA-1:exon:12111;Parent=Msa0163550-mRNA-1
chr1_4 exon 41813286 41813378 41813286 ID=Msa0163550-mRNA-1:exon:12110;Parent=Msa0163550-mRNA-1
chr1_4 exon 41814343 41814467 41814343 ID=Msa0163550-mRNA-1:exon:12109;Parent=Msa0163550-mRNA-1
chr1_4 exon 41814666 41814756 41814666 ID=Msa0163550-mRNA-1:exon:12108;Parent=Msa0163550-mRNA-1
chr1_4 exon 41814859 41815158 41814859 ID=Msa0163550-mRNA-1:exon:12107;Parent=Msa0163550-mRNA-1
chr1_4 exon 41816351 41817016 41816351 ID=Msa0163550-mRNA-1:exon:12106;Parent=Msa0163550-mRNA-1
chr1_4 exon 41817037 41817097 41817037 ID=Msa0163550-mRNA-1:exon:12105;Parent=Msa0163550-mRNA-1
chr1_4 exon 41817329 41817426 41817329 ID=Msa0163550-mRNA-1:exon:12104;Parent=Msa0163550-mRNA-1
chr1_4 five_prime_UTR 41817403 41817426 41817403 ID=Msa0163550-mRNA-1:five_prime_utr;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41817329 41817402 41817329 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41817037 41817097 41817037 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41816351 41817016 41816351 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41814859 41815158 41814859 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41814666 41814756 41814666 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41814343 41814467 41814343 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41813286 41813378 41813286 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41812437 41812502 41812437 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 CDS 41812222 41812356 41812222 ID=Msa0163550-mRNA-1:cds;Parent=Msa0163550-mRNA-1
chr1_4 three_prime_UTR 41811983 41812221 41811983 ID=Msa0163550-mRNA-1:three_prime_utr;Parent=Msa0163550-mRNA-1
chr1_4 three_prime_UTR 41811666 41811753 41811666 ID=Msa0163550-mRNA-1:three_prime_utr;Parent=Msa0163550-mRNA-1
Gene Sequence

>Msa0163550

ATGAGCAAAGGTGGTCGTGCTAACCGTAAAACCTTTTGCAGTTTTCCAATCAAATGCTTCCCACAACTTCTCAGGTTTTGGAAGAAAATTTTCTGGGTAAATGGAAAGTTTGAATCTTTTGGGTCCCTAAGTTTTATCCCAATTTTGAAGTTCAAAATGGTGACTTGTGCGTCAACAAATTTTGCACATTCCAATGCTATAAATTCAGCAGGGGTGTTTAATGTTATTAGAGGAAGAAAATTTTCTATGAGAGTTAATTTCATGAAAAATTTTGATAGCAAAATTGGATTTTTAGGTAGTGAGAGAAAGTTAGGTTTAGTTCAAGTTAAGTGTTCAATTAATTCCAATAATGGTAGTTCATATCATAACCAAGACCCTTTTCTACATCTGCATCCTGAGGTTTCGATGCTTAGAGGTGAGGCGAGTAGCACGGTGAATGTTCCGAGAAAGGGTAGTTCTAGTTTGGGTGAGGATTTGTCCGAGAGCTTAGGGGATATATCTAGTGAGAGTAATTACAATCAGGCGAAGATTAAAGTTATTGGTGTAGGAGGTGGTGGATCTAACGCGGTGAATCGTATGATAGAGAGTTCGATGCATGGAGTTGAGTTTTGGATTGTTAATACTGATGTACAAGCTATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTCTGCAGATTGGTTTGGAACTTACGCGAGGTCTTGGAGCTGGTGGTAACCCTGAGATGGGAATGAATGCTGCGAAAGAAAGCAGAGAGTCGATTGAAGAGGCGGTTTATGGAGCTGATATGGTCTTTGTTACAGCTGGAATGGGTGGTGGAACCGGCACAGGTGGTGCTCCGATTATTGCTGGTGTTGCAAAGTCAATGGGTATACTGACTGTTGGGATTGTCACGACCCCTTTTTCATTTGAAGGACGAAAGAGATCCATTCAAGCACAAGAAGGAATTACAGCTTTAAGAGATAATGTCGATACTCTAATAGTTATTCCAAATGACAAGCTATTAACTGCAGTTTCTCAATCTACCCCTGTAACGGAAGCATTCAATCTTGCTGATGATATTCTTCGACAGGGCGTTCGTGGCATATCTGATATTATTACAATCCCTGGGATGGTAAATGTTGATTTTGCTGATATTCGAGCTATAATGGCCAATGCTGGTTCTTCACTGATGGGGATAGGAACTGCAACTGGGAAAACAAGGGCAAGAGATGCTGCGTTAAATGCTATTCAGTCTCCTTTACTGGATATTGGTATAGAGAGGGCTACTGGAATTGTGTGGAACATAACTGGTGGGAGTGATCTGACTTTGTTTGAGGTAAATGCTGCTGCAGAAGTTATCTACGACCTCGTGGACCCTAGTGCTAATTTAATTTTTGGAGCAGTAATAGATCCTTCACTTACTGGTCAAGTAAGCATAACATTAATTGCAACCGGATTCAAGCGTCAAGAGGAACATGAAGAGAAGCCACTACAGACTAGTCAGCTCACTCAGGGAGATACAACTGTCAATTTCAATCAGCGACCTTCCTCGTTCTCTGATGATGGTAGTTTGTTTGAGATCCCTGATTTCTTAAAGAAGAAAGGACGCTCACGCTATCCTAGGGTTTAA

Protein sequence

>Msa0163550

MSKGGRANRKTFCSFPIKCFPQLLRFWKKIFWVNGKFESFGSLSFIPILKFKMVTCASTNFAHSNAINSAGVFNVIRGRKFSMRVNFMKNFDSKIGFLGSERKLGLVQVKCSINSNNGSSYHNQDPFLHLHPEVSMLRGEASSTVNVPRKGSSSLGEDLSESLGDISSESNYNQAKIKVIGVGGGGSNAVNRMIESSMHGVEFWIVNTDVQAMRMSPVFPENRLQIGLELTRGLGAGGNPEMGMNAAKESRESIEEAVYGADMVFVTAGMGGGTGTGGAPIIAGVAKSMGILTVGIVTTPFSFEGRKRSIQAQEGITALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGMVNVDFADIRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSLTGQVSITLIATGFKRQEEHEEKPLQTSQLTQGDTTVNFNQRPSSFSDDGSLFEIPDFLKKKGRSRYPRV*