AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1434950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434950 MtrunA17_Chr4g0002731 88.000 450 21 5 1 444 1 423 0.0 730
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434950 AT1G15810.1 55.365 233 69 4 199 430 219 417 8.52e-76 243
Msa1434950 AT1G80620.1 39.073 453 187 14 16 432 15 414 8.90e-76 243

Find 136 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATTTAGGTTTAATTTA+TGG 0.101635 tig0027598:+36242 Msa1434950:three_prime_UTR
AATATTTCTTGTATCATAAT+TGG 0.161540 tig0027598:+36327 Msa1434950:three_prime_UTR
GAAGAAGCCAATCTCGTTTC+AGG 0.197152 tig0027598:+31675 Msa1434950:CDS
TCAGCAGAGGACATGTTATC+TGG 0.221149 tig0027598:-33618 None:intergenic
TATGTTGGGGTTTATTTAAT+TGG 0.228847 tig0027598:-36009 None:intergenic
TTTGCTCAAGATATCATCTT+TGG 0.250670 tig0027598:-31596 None:intergenic
GGAATCAGGTGCGGTGGTTT+TGG 0.276997 tig0027598:-31635 None:intergenic
CGGGCTTTATAAGTATATTC+TGG 0.291890 tig0027598:-35963 None:intergenic
TTAGCCAAGGTGAATGATTC+AGG 0.297727 tig0027598:+31934 Msa1434950:CDS
GTGAATGATTCAGGGAGTTT+TGG 0.301942 tig0027598:+31943 Msa1434950:CDS
CGTATCCGAAGCGGAATCTT+TGG 0.307010 tig0027598:-31725 None:intergenic
TTGCTATTTGTTGATTGCTT+TGG 0.309603 tig0027598:+33425 Msa1434950:CDS
TTATATATGCATGGTGAATT+AGG 0.318193 tig0027598:+31976 Msa1434950:CDS
TACTAACATGAAGCTTTATT+AGG 0.327657 tig0027598:-32198 None:intergenic
TTGTTACCGGATTCGATGTT+TGG 0.341309 tig0027598:+31892 Msa1434950:CDS
AGTGGTGGAGAGTAGGGTTT+GGG 0.342066 tig0027598:-31415 None:intergenic
ATTCTTCAGCCATGGATATA+TGG 0.342367 tig0027598:-36147 None:intergenic
CGATGTTTGGGAAGGAGATA+AGG 0.345042 tig0027598:+31905 Msa1434950:CDS
ACACTTGTAGAAGCAAAATA+TGG 0.357125 tig0027598:-36120 None:intergenic
AGCTTGGAGTTCCACCAATC+AGG 0.379248 tig0027598:-33055 None:intergenic
TCTTGTATCATAATTGGAAA+TGG 0.387100 tig0027598:+36333 Msa1434950:three_prime_UTR
TAAAGCCCGGACTGGTAAAT+CGG 0.389131 tig0027598:+35977 Msa1434950:CDS
TCTGACTTGTTGTAAGGATT+CGG 0.391613 tig0027598:-31503 None:intergenic
AATATGTCAGCGGGGAATAG+TGG 0.398052 tig0027598:+31862 Msa1434950:CDS
TGATGGAGTGGTGGAGAGTA+GGG 0.398977 tig0027598:-31421 None:intergenic
CTATTCCCCGCTGACATATT+CGG 0.403136 tig0027598:-31859 None:intergenic
TAGTGGGACGAGTTTGTTAC+CGG 0.405301 tig0027598:+31879 Msa1434950:CDS
GCTTAGGAAATAATTCTGTT+TGG 0.411342 tig0027598:+36365 Msa1434950:three_prime_UTR
GAGTGGTGGAGAGTAGGGTT+TGG 0.415098 tig0027598:-31416 None:intergenic
GTGATGGAGTGGTGGAGAGT+AGG 0.417770 tig0027598:-31422 None:intergenic
TGCTTTAGGATGTGCATTCT+CGG 0.419325 tig0027598:+35829 Msa1434950:intron
TGTGGCTCTGCTCGTGTTCA+AGG 0.419529 tig0027598:+33699 Msa1434950:CDS
TAAAGAGCATCTTGTTGAAA+AGG 0.423407 tig0027598:+33094 Msa1434950:CDS
CTTAGAGAGAACAAAACAAT+AGG 0.423531 tig0027598:-35922 None:intergenic
CCATAAATTAAACCTAAATC+AGG 0.428382 tig0027598:-36242 None:intergenic
CTACAAAATAAACAATTGAT+TGG 0.428999 tig0027598:-36279 None:intergenic
CTCAAGTGAAAGGAAAAGAT+TGG 0.434328 tig0027598:+32022 Msa1434950:CDS
GTTAATAGATCATCGGAATC+AGG 0.434445 tig0027598:-31649 None:intergenic
TGGAGGTGGAGAAGAGGTGA+TGG 0.434925 tig0027598:-31438 None:intergenic
AAAACTACCATCGGTGGTGG+TGG 0.439256 tig0027598:+31751 Msa1434950:CDS
GTTGAAGAAAGTGAGGGAAA+TGG 0.440483 tig0027598:+32071 Msa1434950:CDS
TGTTACCGGATTCGATGTTT+GGG 0.445980 tig0027598:+31893 Msa1434950:CDS
ATTGACTAAGCTGCTTGAAC+TGG 0.450433 tig0027598:-36091 None:intergenic
TGATGATAGATGCTTAATCT+TGG 0.455799 tig0027598:-33916 None:intergenic
GATGTTTGGGAAGGAGATAA+GGG 0.455958 tig0027598:+31906 Msa1434950:CDS
GGTCTCCACCTCGGCGTCAC+CGG 0.457444 tig0027598:-31838 None:intergenic
CTCTTCTCCACCTCCAACTC+CGG 0.457603 tig0027598:+31445 Msa1434950:CDS
GAAATGGATAAATGAAGCTT+AGG 0.459164 tig0027598:+36349 Msa1434950:three_prime_UTR
ACCGTCATTGTCACCGGAGT+TGG 0.459507 tig0027598:-31458 None:intergenic
GTTGAACACTTTATTTGTAT+CGG 0.460097 tig0027598:-32127 None:intergenic
AACTACCATCGGTGGTGGTG+GGG 0.461512 tig0027598:+31753 Msa1434950:CDS
AGCGCCATTGTTGGTGGTGG+TGG 0.462114 tig0027598:-31367 None:intergenic
GGAGGCTTTGACAAGTAGCT+TGG 0.462551 tig0027598:-33071 None:intergenic
ATTGATATGTTGTCCCTGAT+TGG 0.468754 tig0027598:+33041 Msa1434950:CDS
TACATATCCTGAAACGAGAT+TGG 0.469151 tig0027598:-31682 None:intergenic
ACTACCATCGGTGGTGGTGG+GGG 0.471057 tig0027598:+31754 Msa1434950:CDS
TGAGCTTCTGACTTGTTGTA+AGG 0.477275 tig0027598:-31509 None:intergenic
CGGAGAAGAAGCGCCATTGT+TGG 0.491513 tig0027598:-31376 None:intergenic
AAACTACCATCGGTGGTGGT+GGG 0.493683 tig0027598:+31752 Msa1434950:CDS
TGCGAGGGAGAGAGAGGAGA+AGG 0.494280 tig0027598:-31562 None:intergenic
TCCTTCCCAAACATCGAATC+CGG 0.494755 tig0027598:-31898 None:intergenic
GTCGCCACCGTCATTGTCAC+CGG 0.497517 tig0027598:-31464 None:intergenic
AGTTCAAGCAGCTTAGTCAA+TGG 0.497786 tig0027598:+36093 Msa1434950:three_prime_UTR
GTGAGAGGTTGAAGAAAGTG+AGG 0.507809 tig0027598:+32064 Msa1434950:CDS
GTCATTGTCACCGGAGTTGG+AGG 0.510211 tig0027598:-31455 None:intergenic
CAGCAGAGGACATGTTATCT+GGG 0.517850 tig0027598:-33617 None:intergenic
TTAGACTGGATAAAATCAGC+TGG 0.522482 tig0027598:-36056 None:intergenic
ATTGTCACCGGAGTTGGAGG+TGG 0.527310 tig0027598:-31452 None:intergenic
GGTGGTGGAGAAAGAGAAAG+AGG 0.528464 tig0027598:-31352 None:intergenic
AAAGCCCGGACTGGTAAATC+GGG 0.529645 tig0027598:+35978 Msa1434950:CDS
GTGGAGAAGAGGTGATGGAG+TGG 0.532903 tig0027598:-31433 None:intergenic
ATATGTCAGCGGGGAATAGT+GGG 0.534656 tig0027598:+31863 Msa1434950:CDS
TCAACAAGATGCTCTTTAGG+AGG 0.535728 tig0027598:-33089 None:intergenic
GGCTAGTCAGACACTTAGAC+TGG 0.536045 tig0027598:-36070 None:intergenic
TGGAGACCGAATATGTCAGC+GGG 0.537439 tig0027598:+31853 Msa1434950:CDS
GAGAAGAGGTGATGGAGTGG+TGG 0.540124 tig0027598:-31430 None:intergenic
AGAAGAAGCGCCATTGTTGG+TGG 0.541690 tig0027598:-31373 None:intergenic
CTTCTGAGTTAATAGATCAT+CGG 0.542609 tig0027598:-31656 None:intergenic
TAGGATGTGCATTCTCGGAA+AGG 0.545917 tig0027598:+35834 Msa1434950:intron
GCTTGGAGTTCCACCAATCA+GGG 0.546915 tig0027598:-33054 None:intergenic
TTCTCCACCACCACCAACAA+TGG 0.548692 tig0027598:+31363 Msa1434950:exon
TGTAAGGATTCGGAGAAGGA+GGG 0.550289 tig0027598:-31493 None:intergenic
ATCATCAGTTCTACACAAGA+AGG 0.554571 tig0027598:+33932 Msa1434950:CDS
CTTCAACCTCTCACTCAACT+CGG 0.554778 tig0027598:-32055 None:intergenic
GTCACCCGATTTACCAGTCC+GGG 0.556020 tig0027598:-35982 None:intergenic
CGATTGCCGAGTTGAGTGAG+AGG 0.557053 tig0027598:+32049 Msa1434950:CDS
TTGTAAGGATTCGGAGAAGG+AGG 0.557469 tig0027598:-31494 None:intergenic
CGGAGTTGGAGGTGGAGAAG+AGG 0.562478 tig0027598:-31444 None:intergenic
AGCAACACATTCTTCAGCCA+TGG 0.562640 tig0027598:-36155 None:intergenic
ACCGGATTCGATGTTTGGGA+AGG 0.563280 tig0027598:+31897 Msa1434950:CDS
TGATAGCAATGGTTCAAAAG+AGG 0.564231 tig0027598:+35859 Msa1434950:CDS
TTGTTGTAAGGATTCGGAGA+AGG 0.565751 tig0027598:-31497 None:intergenic
TAGCCAAGGTGAATGATTCA+GGG 0.570378 tig0027598:+31935 Msa1434950:CDS
CGTCACCCGATTTACCAGTC+CGG 0.571673 tig0027598:-35983 None:intergenic
GAAGGTGTTGTGTTTGACGT+TGG 0.572394 tig0027598:-31544 None:intergenic
TCGATCCAAAGATTCCGCTT+CGG 0.574006 tig0027598:+31720 Msa1434950:CDS
ATTGGACTTGATGTGATTCG+TGG 0.579464 tig0027598:+31778 Msa1434950:CDS
AAGATGTCCGAGTCAGATTG+TGG 0.579927 tig0027598:+33681 Msa1434950:CDS
CAGAATATACTTATAAAGCC+CGG 0.580244 tig0027598:+35964 Msa1434950:CDS
TGGTGGAGAAAGAGAAAGAG+GGG 0.580844 tig0027598:-31350 None:intergenic
TGAGAGGTTGAAGAAAGTGA+GGG 0.583053 tig0027598:+32065 Msa1434950:CDS
GTGGTGGAGAAAGAGAAAGA+GGG 0.584438 tig0027598:-31351 None:intergenic
ACTTGATGAATTTCATCATG+AGG 0.585281 tig0027598:-33389 None:intergenic
TATACTTATAAAGCCCGGAC+TGG 0.588412 tig0027598:+35969 Msa1434950:CDS
TTGGGAAGGAGATAAGGGAT+AGG 0.591410 tig0027598:+31911 Msa1434950:CDS
AAATTGAGACCTCAAGTGAA+AGG 0.593143 tig0027598:+32012 Msa1434950:CDS
ATTGAAAATTGAGCTGACAA+AGG 0.594958 tig0027598:+33644 Msa1434950:CDS
AATCCCAGTCGGTTCTTCTG+AGG 0.595536 tig0027598:-35899 None:intergenic
TCGAAAACTACCATCGGTGG+TGG 0.596020 tig0027598:+31748 Msa1434950:CDS
AATACCTCAGAAGAACCGAC+TGG 0.596907 tig0027598:+35895 Msa1434950:CDS
AATCAACAAATAGCAAGAGA+TGG 0.599289 tig0027598:-33418 None:intergenic
AGTGTTGTTCCATATATCCA+TGG 0.599971 tig0027598:+36138 Msa1434950:three_prime_UTR
GATAAGGGATAGGTTAGCCA+AGG 0.602083 tig0027598:+31921 Msa1434950:CDS
AGAAGCGCCATTGTTGGTGG+TGG 0.602122 tig0027598:-31370 None:intergenic
TCCAACTCCGGTGACAATGA+CGG 0.604175 tig0027598:+31457 Msa1434950:CDS
GATATGTTGTCCCTGATTGG+TGG 0.604709 tig0027598:+33044 Msa1434950:CDS
GACATATTCGGTCTCCACCT+CGG 0.607216 tig0027598:-31847 None:intergenic
TAGACTGGATAAAATCAGCT+GGG 0.619439 tig0027598:-36055 None:intergenic
AGACGCCGGTGACGCCGAGG+TGG 0.621545 tig0027598:+31833 Msa1434950:CDS
AGCAGAGCCACAATCTGACT+CGG 0.621918 tig0027598:-33688 None:intergenic
ATCATCGGAATCAGGTGCGG+TGG 0.623646 tig0027598:-31641 None:intergenic
ACTCCCTGAATCATTCACCT+TGG 0.637166 tig0027598:-31938 None:intergenic
ACTGTTAGGTTATATATGCA+TGG 0.640796 tig0027598:+31967 Msa1434950:CDS
TCGGAAAGGTCTGATAGCAA+TGG 0.642289 tig0027598:+35848 Msa1434950:CDS
ATCAGACGCCGGTGACGCCG+AGG 0.642782 tig0027598:+31830 Msa1434950:CDS
GATACGTCGAAAACTACCAT+CGG 0.667277 tig0027598:+31742 Msa1434950:CDS
TGATACAAGAAATATTACGA+TGG 0.667765 tig0027598:-36320 None:intergenic
ATACCTCAGAAGAACCGACT+GGG 0.671133 tig0027598:+35896 Msa1434950:CDS
TAGATCATCGGAATCAGGTG+CGG 0.679666 tig0027598:-31644 None:intergenic
AAATTCGACGAATCAGACGC+CGG 0.695623 tig0027598:+31819 Msa1434950:CDS
ACGTCGAAAACTACCATCGG+TGG 0.701049 tig0027598:+31745 Msa1434950:CDS
GTGGAGACCGAATATGTCAG+CGG 0.711187 tig0027598:+31852 Msa1434950:CDS
AAAACAATAGGAATCCCAGT+CGG 0.725069 tig0027598:-35910 None:intergenic
AACTCCGGTGACAATGACGG+TGG 0.731984 tig0027598:+31460 Msa1434950:CDS
TTACGATGGAAAAGACAACA+AGG 0.736796 tig0027598:-36306 None:intergenic
GGAGACCGAATATGTCAGCG+GGG 0.770843 tig0027598:+31854 Msa1434950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAATCTATTGTAGA+TGG + tig0027598:32902-32921 Msa1434950:intron 15.0%
!! TATATGAAAAATATAAGTGA+TGG + tig0027598:32997-33016 Msa1434950:intron 15.0%
!! AATATATTAATGTTTGACTA+TGG - tig0027598:33330-33349 None:intergenic 15.0%
!!! TTCTTTTAAATCTAGTATAA+CGG + tig0027598:34128-34147 Msa1434950:intron 15.0%
!!! TTTTTGAATTTTAAGTTTGT+TGG - tig0027598:35078-35097 None:intergenic 15.0%
!!! TCTATTTTTAATCATGTAAT+TGG - tig0027598:35304-35323 None:intergenic 15.0%
!!! TTTTTCAATTAGTTTATGTT+GGG - tig0027598:36026-36045 None:intergenic 15.0%
!!! TTTTTTCAATTAGTTTATGT+TGG - tig0027598:36027-36046 None:intergenic 15.0%
!! AATATTTCTTGTATCATAAT+TGG + tig0027598:36327-36346 Msa1434950:three_prime_UTR 15.0%
!! TTTATCATTGATACTAGATA+AGG + tig0027598:32495-32514 Msa1434950:intron 20.0%
!! ATGACCAAAATATATTTGTT+TGG - tig0027598:32676-32695 None:intergenic 20.0%
!!! AACAAATATATTTTGGTCAT+AGG + tig0027598:32676-32695 Msa1434950:intron 20.0%
!!! ACAAATATATTTTGGTCATA+GGG + tig0027598:32677-32696 Msa1434950:intron 20.0%
!!! AGCATTTTAGATTAATTGAA+TGG - tig0027598:33285-33304 None:intergenic 20.0%
!! TAATAGCTTAAAAAAAAGTG+GGG - tig0027598:33366-33385 None:intergenic 20.0%
!! GTAATAGCTTAAAAAAAAGT+GGG - tig0027598:33367-33386 None:intergenic 20.0%
!! TGTAATAGCTTAAAAAAAAG+TGG - tig0027598:33368-33387 None:intergenic 20.0%
!! TGTTCGATATTAAATTTAGA+CGG + tig0027598:33758-33777 Msa1434950:intron 20.0%
!! TAAAGTATAGCAAACATATT+TGG - tig0027598:33786-33805 None:intergenic 20.0%
!!! TACTAATTTTCTTTCATGAT+TGG + tig0027598:33804-33823 Msa1434950:intron 20.0%
!!! AGTGTTTGGAATATATTAAT+AGG + tig0027598:33831-33850 Msa1434950:intron 20.0%
!! AAAAAAATTAGTACTAGAGT+TGG - tig0027598:34257-34276 None:intergenic 20.0%
!! GAATATTTATAAAGTTGTAC+AGG - tig0027598:34445-34464 None:intergenic 20.0%
!! ACTTTATAAATATTCTGCAA+AGG + tig0027598:34450-34469 Msa1434950:intron 20.0%
!! CTGGTAAAGATTAAAAATAA+GGG - tig0027598:34643-34662 None:intergenic 20.0%
!! ACTGGTAAAGATTAAAAATA+AGG - tig0027598:34644-34663 None:intergenic 20.0%
!!! GAAAATTGTTTTAGTTAACA+TGG - tig0027598:34853-34872 None:intergenic 20.0%
!!! TGTTAACTAAAACAATTTTC+AGG + tig0027598:34853-34872 Msa1434950:intron 20.0%
!! TCATAAAAATCATAGCTTAA+AGG + tig0027598:34959-34978 Msa1434950:intron 20.0%
!!! ACAATATTCTTTTACTAAGA+TGG - tig0027598:35130-35149 None:intergenic 20.0%
!! TCTTAGTAAAAGAATATTGT+TGG + tig0027598:35130-35149 Msa1434950:intron 20.0%
!! TTATGAGAAATGAAATACTA+GGG - tig0027598:35387-35406 None:intergenic 20.0%
!! TGAACATAAGAATTTAATCA+GGG - tig0027598:35520-35539 None:intergenic 20.0%
!! ATGAACATAAGAATTTAATC+AGG - tig0027598:35521-35540 None:intergenic 20.0%
!! CCAATTCAAAATTATATTGA+AGG - tig0027598:35585-35604 None:intergenic 20.0%
!!! CCTTCAATATAATTTTGAAT+TGG + tig0027598:35582-35601 Msa1434950:intron 20.0%
!!! TTTTCAATTAGTTTATGTTG+GGG - tig0027598:36025-36044 None:intergenic 20.0%
!! TCAGGCAAAAATAATATAAT+GGG - tig0027598:36227-36246 None:intergenic 20.0%
!! ATCAGGCAAAAATAATATAA+TGG - tig0027598:36228-36247 None:intergenic 20.0%
!!! ATATTATTTTTGCCTGATTT+AGG + tig0027598:36230-36249 Msa1434950:three_prime_UTR 20.0%
!! CTACAAAATAAACAATTGAT+TGG - tig0027598:36282-36301 None:intergenic 20.0%
!!! CAATCAATTGTTTATTTTGT+AGG + tig0027598:36280-36299 Msa1434950:three_prime_UTR 20.0%
! TTATATATGCATGGTGAATT+AGG + tig0027598:31976-31995 Msa1434950:CDS 25.0%
!! GTTGAACACTTTATTTGTAT+CGG - tig0027598:32130-32149 None:intergenic 25.0%
!!! TACTAACATGAAGCTTTATT+AGG - tig0027598:32201-32220 None:intergenic 25.0%
! ATCATCGTATCATAACTAAA+AGG - tig0027598:32278-32297 None:intergenic 25.0%
!!! TTGTTTTGCAATACATGTTT+AGG + tig0027598:32417-32436 Msa1434950:intron 25.0%
! CTATGTTTGGTAAAAAATAG+TGG + tig0027598:32440-32459 Msa1434950:intron 25.0%
!!! CTCATAGTTGATAAATTAGT+GGG + tig0027598:32540-32559 Msa1434950:intron 25.0%
!!! ACAAGTTTAAGCTTTTTTAC+TGG - tig0027598:32639-32658 None:intergenic 25.0%
!! TGTGCCAAACAAATATATTT+TGG + tig0027598:32669-32688 Msa1434950:intron 25.0%
!!! CAAATATATTTTGGTCATAG+GGG + tig0027598:32678-32697 Msa1434950:intron 25.0%
! ATTGACAACACTTTATACTA+AGG - tig0027598:32753-32772 None:intergenic 25.0%
!!! AGTATAAAGTGTTGTCAATT+AGG + tig0027598:32754-32773 Msa1434950:intron 25.0%
!!! GTATAAAGTGTTGTCAATTA+GGG + tig0027598:32755-32774 Msa1434950:intron 25.0%
!!! TATAAAGTGTTGTCAATTAG+GGG + tig0027598:32756-32775 Msa1434950:intron 25.0%
! AATATAGAGTTATAAACCAC+AGG - tig0027598:33240-33259 None:intergenic 25.0%
! GGTTAATTCAAAATATCAAG+CGG - tig0027598:33477-33496 None:intergenic 25.0%
!!! GGCACATTTTGTTTTTTTAA+TGG + tig0027598:33538-33557 Msa1434950:intron 25.0%
!!! AATTTTCAATTTTTCAGCAG+AGG - tig0027598:33634-33653 None:intergenic 25.0%
! GTTCGATATTAAATTTAGAC+GGG + tig0027598:33759-33778 Msa1434950:intron 25.0%
! AACATACAAATCTTCTATTG+AGG - tig0027598:34026-34045 None:intergenic 25.0%
! AACAATGTTTGTACATCAAA+TGG - tig0027598:34052-34071 None:intergenic 25.0%
!! ATTTTACAGACTATGAAAAC+TGG - tig0027598:34167-34186 None:intergenic 25.0%
! TTTAATCTTTACCAGTTAAC+TGG + tig0027598:34648-34667 Msa1434950:intron 25.0%
! TTGCTACATAAACAATATGT+TGG - tig0027598:34820-34839 None:intergenic 25.0%
! TATCTCAGACAAATTAAGAT+GGG + tig0027598:34884-34903 Msa1434950:intron 25.0%
! ATTGGGTATTATTATGAAGA+TGG + tig0027598:34908-34927 Msa1434950:intron 25.0%
! TTGGGTATTATTATGAAGAT+GGG + tig0027598:34909-34928 Msa1434950:intron 25.0%
! TTATTGTTACTCATGTCTAT+GGG - tig0027598:35017-35036 None:intergenic 25.0%
!! AAAGAATATTGTTGGTAGAT+TGG + tig0027598:35138-35157 Msa1434950:intron 25.0%
! AATATCATTCACATCGAAAT+AGG + tig0027598:35275-35294 Msa1434950:intron 25.0%
! TGATTAAAAATAGACTGACA+TGG + tig0027598:35310-35329 Msa1434950:intron 25.0%
! CTTATGAGAAATGAAATACT+AGG - tig0027598:35388-35407 None:intergenic 25.0%
! AAAATTACAACTTCCAACAT+AGG - tig0027598:35430-35449 None:intergenic 25.0%
!! AGTTCATCATTAGTTTAACA+TGG + tig0027598:35462-35481 Msa1434950:intron 25.0%
!! GTTCATCATTAGTTTAACAT+GGG + tig0027598:35463-35482 Msa1434950:intron 25.0%
!! TTCATCATTAGTTTAACATG+GGG + tig0027598:35464-35483 Msa1434950:intron 25.0%
! ATATAGCATAAATTGAAGCA+AGG - tig0027598:35658-35677 None:intergenic 25.0%
! TATGTTGGGGTTTATTTAAT+TGG - tig0027598:36012-36031 None:intergenic 25.0%
! TTCGTACAGAAAAAAGAAAA+TGG - tig0027598:36181-36200 None:intergenic 25.0%
! CCATAAATTAAACCTAAATC+AGG - tig0027598:36245-36264 None:intergenic 25.0%
!! CCTGATTTAGGTTTAATTTA+TGG + tig0027598:36242-36261 Msa1434950:three_prime_UTR 25.0%
! TGATACAAGAAATATTACGA+TGG - tig0027598:36323-36342 None:intergenic 25.0%
! TCTTGTATCATAATTGGAAA+TGG + tig0027598:36333-36352 Msa1434950:three_prime_UTR 25.0%
TTTGCTCAAGATATCATCTT+TGG - tig0027598:31599-31618 None:intergenic 30.0%
CTTCTGAGTTAATAGATCAT+CGG - tig0027598:31659-31678 None:intergenic 30.0%
ACTGTTAGGTTATATATGCA+TGG + tig0027598:31967-31986 Msa1434950:CDS 30.0%
TCGGATATACTAACTCAAAA+GGG - tig0027598:32347-32366 None:intergenic 30.0%
ATCGGATATACTAACTCAAA+AGG - tig0027598:32348-32367 None:intergenic 30.0%
ATACATGTTTAGGCTATGTT+TGG + tig0027598:32427-32446 Msa1434950:intron 30.0%
! GTTTGGTAAAAAATAGTGGA+TGG + tig0027598:32444-32463 Msa1434950:intron 30.0%
!! GCTCATAGTTGATAAATTAG+TGG + tig0027598:32539-32558 Msa1434950:intron 30.0%
!! TGATAAATTAGTGGGTTGAA+TGG + tig0027598:32548-32567 Msa1434950:intron 30.0%
!! GATAAATTAGTGGGTTGAAT+GGG + tig0027598:32549-32568 Msa1434950:intron 30.0%
!! ATAAATTAGTGGGTTGAATG+GGG + tig0027598:32550-32569 Msa1434950:intron 30.0%
!! ACAAATTTCTGAGGTTATAG+AGG - tig0027598:32716-32735 None:intergenic 30.0%
ATCATTGTATATTGCATCTC+TGG + tig0027598:32856-32875 Msa1434950:intron 30.0%
! GAAAAATATAAGTGATGGTG+TGG + tig0027598:33002-33021 Msa1434950:intron 30.0%
! TTTTCAACAAGATGCTCTTT+AGG - tig0027598:33095-33114 None:intergenic 30.0%
!! TAAAGAGCATCTTGTTGAAA+AGG + tig0027598:33094-33113 Msa1434950:CDS 30.0%
ACTTGATGAATTTCATCATG+AGG - tig0027598:33392-33411 None:intergenic 30.0%
AATCAACAAATAGCAAGAGA+TGG - tig0027598:33421-33440 None:intergenic 30.0%
!! TTGCTATTTGTTGATTGCTT+TGG + tig0027598:33425-33444 Msa1434950:CDS 30.0%
!! GATATTTTGAATTAACCTCG+TGG + tig0027598:33480-33499 Msa1434950:intron 30.0%
CAACATAGAGTGGAAATATT+AGG - tig0027598:33582-33601 None:intergenic 30.0%
ATTGAAAATTGAGCTGACAA+AGG + tig0027598:33644-33663 Msa1434950:CDS 30.0%
TGATGATAGATGCTTAATCT+TGG - tig0027598:33919-33938 None:intergenic 30.0%
! TAGTCTGTAAAATTTTCGTC+TGG + tig0027598:34174-34193 Msa1434950:intron 30.0%
TATTTGAATGTGCTTCTGTT+AGG + tig0027598:34203-34222 Msa1434950:intron 30.0%
! TCATAACCAGTGTTGTTAAA+TGG + tig0027598:34306-34325 Msa1434950:intron 30.0%
!!! GATTTTTTGACAACCACTAT+AGG + tig0027598:34342-34361 Msa1434950:intron 30.0%
!!! GTGTTTATATGACGGATTTT+TGG + tig0027598:34391-34410 Msa1434950:intron 30.0%
! TCTTTTTATAAAAGCTTCCG+AGG + tig0027598:34560-34579 Msa1434950:intron 30.0%
TTTATCTCTCTGAACTTACA+GGG - tig0027598:34674-34693 None:intergenic 30.0%
! TTTTATCTCTCTGAACTTAC+AGG - tig0027598:34675-34694 None:intergenic 30.0%
GTATCTCAGACAAATTAAGA+TGG + tig0027598:34883-34902 Msa1434950:intron 30.0%
AGACAAATTAAGATGGGTAT+TGG + tig0027598:34890-34909 Msa1434950:intron 30.0%
GACAAATTAAGATGGGTATT+GGG + tig0027598:34891-34910 Msa1434950:intron 30.0%
! AGCTATGATTTTTATGACTC+TGG - tig0027598:34956-34975 None:intergenic 30.0%
GTTATTGTTACTCATGTCTA+TGG - tig0027598:35018-35037 None:intergenic 30.0%
TTCCAACATAGGAACTAAAA+TGG - tig0027598:35419-35438 None:intergenic 30.0%
GAATTTAATCAGGGATCAAA+TGG - tig0027598:35511-35530 None:intergenic 30.0%
TGTGAACAAAATCTTAACCT+CGG + tig0027598:35559-35578 Msa1434950:intron 30.0%
AATTCTTTCTGTGATGCTTT+AGG + tig0027598:35815-35834 Msa1434950:intron 30.0%
CTTAGAGAGAACAAAACAAT+AGG - tig0027598:35925-35944 None:intergenic 30.0%
!! TGTTTTGTTCTCTCTAAGTT+AGG + tig0027598:35927-35946 Msa1434950:CDS 30.0%
CAGAATATACTTATAAAGCC+CGG + tig0027598:35964-35983 Msa1434950:CDS 30.0%
ACACTTGTAGAAGCAAAATA+TGG - tig0027598:36123-36142 None:intergenic 30.0%
GAAATGGATAAATGAAGCTT+AGG + tig0027598:36349-36368 Msa1434950:three_prime_UTR 30.0%
!! TCTGACTTGTTGTAAGGATT+CGG - tig0027598:31506-31525 None:intergenic 35.0%
GTTAATAGATCATCGGAATC+AGG - tig0027598:31652-31671 None:intergenic 35.0%
TACATATCCTGAAACGAGAT+TGG - tig0027598:31685-31704 None:intergenic 35.0%
AAATTGAGACCTCAAGTGAA+AGG + tig0027598:32012-32031 Msa1434950:CDS 35.0%
! CAATCTTTTCCTTTCACTTG+AGG - tig0027598:32024-32043 None:intergenic 35.0%
CTCAAGTGAAAGGAAAAGAT+TGG + tig0027598:32022-32041 Msa1434950:CDS 35.0%
! CATTTCATCTTCCTCTAAAG+AGG + tig0027598:32318-32337 Msa1434950:intron 35.0%
TGATAAAGTTCATTCGCTGT+CGG - tig0027598:32482-32501 None:intergenic 35.0%
TCTAGTAGTGTTTGAGCTTA+TGG - tig0027598:32590-32609 None:intergenic 35.0%
TTTGGCAAGACAAATTTCTG+AGG - tig0027598:32725-32744 None:intergenic 35.0%
CTTTATACTAAGGCTCTGTT+TGG - tig0027598:32743-32762 None:intergenic 35.0%
ATAGGTCCACTATTGTTTAG+TGG + tig0027598:32781-32800 Msa1434950:intron 35.0%
CCAATTCCACTAAACAATAG+TGG - tig0027598:32790-32809 None:intergenic 35.0%
CCACTATTGTTTAGTGGAAT+TGG + tig0027598:32787-32806 Msa1434950:intron 35.0%
ATATTCAGTGATGTCAATCG+CGG - tig0027598:32836-32855 None:intergenic 35.0%
TTTATAAAGCTCTTGCCAAG+TGG + tig0027598:32934-32953 Msa1434950:intron 35.0%
ATTGATATGTTGTCCCTGAT+TGG + tig0027598:33041-33060 Msa1434950:CDS 35.0%
CAATTGTAGCTATCAGATGA+AGG - tig0027598:33198-33217 None:intergenic 35.0%
TTTCCGTAATTGAGAGTTGT+AGG + tig0027598:33451-33470 Msa1434950:intron 35.0%
! TATTTTGCTTCACATGTCGA+TGG + tig0027598:33512-33531 Msa1434950:intron 35.0%
ATCATCAGTTCTACACAAGA+AGG + tig0027598:33932-33951 Msa1434950:CDS 35.0%
!!! TTTTTTAACACCCTACCGTA+TGG + tig0027598:34276-34295 Msa1434950:intron 35.0%
!! GTTAAATGGCATTGGTTTAG+CGG + tig0027598:34320-34339 Msa1434950:intron 35.0%
! CACTATAGGCATTTTGTGAA+GGG + tig0027598:34356-34375 Msa1434950:intron 35.0%
! ACTATAGGCATTTTGTGAAG+GGG + tig0027598:34357-34376 Msa1434950:intron 35.0%
AAATATTCTGCAAAGGAGAC+TGG + tig0027598:34457-34476 Msa1434950:intron 35.0%
AATATTCTGCAAAGGAGACT+GGG + tig0027598:34458-34477 Msa1434950:intron 35.0%
GATTGAGATTGAGATTGAGA+TGG - tig0027598:34765-34784 None:intergenic 35.0%
ATCTCAATCTCAATCTCACT+TGG + tig0027598:34770-34789 Msa1434950:intron 35.0%
ATTGTTTATGTAGCAAGCTC+TGG + tig0027598:34824-34843 Msa1434950:intron 35.0%
ACTGACATGGCTTAATAGAT+GGG + tig0027598:35323-35342 Msa1434950:intron 35.0%
ATAGATGGGAATGTGTTTAC+AGG + tig0027598:35337-35356 Msa1434950:intron 35.0%
ACATAGGAACTAAAATGGAG+TGG - tig0027598:35414-35433 None:intergenic 35.0%
!!! CTCCATTTTAGTTCCTATGT+TGG + tig0027598:35414-35433 Msa1434950:intron 35.0%
! ATCATTAGTTTAACATGGGG+TGG + tig0027598:35467-35486 Msa1434950:intron 35.0%
CAAAATTATATTGAAGGCCG+AGG - tig0027598:35579-35598 None:intergenic 35.0%
TATTCATTGCACACTAGGAT+GGG - tig0027598:35682-35701 None:intergenic 35.0%
ATTCATGTGACTAGTGATGA+GGG - tig0027598:35706-35725 None:intergenic 35.0%
AATTCATGTGACTAGTGATG+AGG - tig0027598:35707-35726 None:intergenic 35.0%
TCTTTGACTGGGAGTAATTA+AGG - tig0027598:35739-35758 None:intergenic 35.0%
TTAATTACTCCCAGTCAAAG+AGG + tig0027598:35738-35757 Msa1434950:intron 35.0%
AATAGTAATACTAGCCAGAC+CGG - tig0027598:35782-35801 None:intergenic 35.0%
TGATAGCAATGGTTCAAAAG+AGG + tig0027598:35859-35878 Msa1434950:CDS 35.0%
AAAACAATAGGAATCCCAGT+CGG - tig0027598:35913-35932 None:intergenic 35.0%
! CGGGCTTTATAAGTATATTC+TGG - tig0027598:35966-35985 None:intergenic 35.0%
TAGACTGGATAAAATCAGCT+GGG - tig0027598:36058-36077 None:intergenic 35.0%
TTAGACTGGATAAAATCAGC+TGG - tig0027598:36059-36078 None:intergenic 35.0%
! AGTGTTGTTCCATATATCCA+TGG + tig0027598:36138-36157 Msa1434950:three_prime_UTR 35.0%
ATTCTTCAGCCATGGATATA+TGG - tig0027598:36150-36169 None:intergenic 35.0%
TTACGATGGAAAAGACAACA+AGG - tig0027598:36309-36328 None:intergenic 35.0%
!!! GAGGGGTTTTTCTGAGATTA+GGG - tig0027598:31336-31355 None:intergenic 40.0%
!!! AGAGGGGTTTTTCTGAGATT+AGG - tig0027598:31337-31356 None:intergenic 40.0%
!!! TGGGTTTTGTGGTTTTGAGA+CGG - tig0027598:31399-31418 None:intergenic 40.0%
TTGTTGTAAGGATTCGGAGA+AGG - tig0027598:31500-31519 None:intergenic 40.0%
!! TGAGCTTCTGACTTGTTGTA+AGG - tig0027598:31512-31531 None:intergenic 40.0%
!! TTGGATTCGTTTTGTTGCGA+GGG - tig0027598:31580-31599 None:intergenic 40.0%
!! TTTGGATTCGTTTTGTTGCG+AGG - tig0027598:31581-31600 None:intergenic 40.0%
GATACGTCGAAAACTACCAT+CGG + tig0027598:31742-31761 Msa1434950:CDS 40.0%
ATTGGACTTGATGTGATTCG+TGG + tig0027598:31778-31797 Msa1434950:CDS 40.0%
TTGTTACCGGATTCGATGTT+TGG + tig0027598:31892-31911 Msa1434950:CDS 40.0%
TGTTACCGGATTCGATGTTT+GGG + tig0027598:31893-31912 Msa1434950:CDS 40.0%
GATGTTTGGGAAGGAGATAA+GGG + tig0027598:31906-31925 Msa1434950:CDS 40.0%
TTAGCCAAGGTGAATGATTC+AGG + tig0027598:31934-31953 Msa1434950:CDS 40.0%
TAGCCAAGGTGAATGATTCA+GGG + tig0027598:31935-31954 Msa1434950:CDS 40.0%
! GTGAATGATTCAGGGAGTTT+TGG + tig0027598:31943-31962 Msa1434950:CDS 40.0%
TGAGAGGTTGAAGAAAGTGA+GGG + tig0027598:32065-32084 Msa1434950:CDS 40.0%
GTTGAAGAAAGTGAGGGAAA+TGG + tig0027598:32071-32090 Msa1434950:CDS 40.0%
GATGATAGACTAGAGAAGCT+TGG + tig0027598:32295-32314 Msa1434950:intron 40.0%
CAAAAGGGTTTCCTCTTTAG+AGG - tig0027598:32332-32351 None:intergenic 40.0%
GATAAAGTTCATTCGCTGTC+GGG - tig0027598:32481-32500 None:intergenic 40.0%
CTAGATAAGGTAGCTGATAG+CGG + tig0027598:32508-32527 Msa1434950:intron 40.0%
TGTTGTCAATTAGGGGCTAT+AGG + tig0027598:32763-32782 Msa1434950:intron 40.0%
ATATTGCATCTCTGGTCATG+TGG + tig0027598:32864-32883 Msa1434950:intron 40.0%
TCAACAAGATGCTCTTTAGG+AGG - tig0027598:33092-33111 None:intergenic 40.0%
CTGTCCTTCTTGAATTGTTG+AGG + tig0027598:33166-33185 Msa1434950:intron 40.0%
AGCACCTCAACAATTCAAGA+AGG - tig0027598:33173-33192 None:intergenic 40.0%
AAAATAATCCAGACACCACG+AGG - tig0027598:33498-33517 None:intergenic 40.0%
GTACTGGAATCAACATAGAG+TGG - tig0027598:33592-33611 None:intergenic 40.0%
! TGTTATCTGGGTGAAAGTAC+TGG - tig0027598:33608-33627 None:intergenic 40.0%
TCATGATTGGATCGAGTGTT+TGG + tig0027598:33817-33836 Msa1434950:intron 40.0%
TGAATGTGCTTCTGTTAGGT+AGG + tig0027598:34207-34226 Msa1434950:intron 40.0%
! CCAATGCCATTTAACAACAC+TGG - tig0027598:34315-34334 None:intergenic 40.0%
! CCAGTGTTGTTAAATGGCAT+TGG + tig0027598:34312-34331 Msa1434950:intron 40.0%
CCTTCACAAAATGCCTATAG+TGG - tig0027598:34358-34377 None:intergenic 40.0%
! CCACTATAGGCATTTTGTGA+AGG + tig0027598:34355-34374 Msa1434950:intron 40.0%
! CTATAGGCATTTTGTGAAGG+GGG + tig0027598:34358-34377 Msa1434950:intron 40.0%
GTCATATAAACACACCACTG+CGG - tig0027598:34384-34403 None:intergenic 40.0%
GCAGTGGTGTGTTTATATGA+CGG + tig0027598:34383-34402 Msa1434950:intron 40.0%
CCAATGTTGTTAATGGCAGA+TGG - tig0027598:34417-34436 None:intergenic 40.0%
CCATCTGCCATTAACAACAT+TGG + tig0027598:34414-34433 Msa1434950:intron 40.0%
GGTGTGACCAATGTTGTTAA+TGG - tig0027598:34424-34443 None:intergenic 40.0%
CCAATCATGATCGTGCATTA+TGG - tig0027598:34485-34504 None:intergenic 40.0%
CCATAATGCACGATCATGAT+TGG + tig0027598:34482-34501 Msa1434950:intron 40.0%
TGTTGAAATTTAGCCGTTCC+AGG + tig0027598:34700-34719 Msa1434950:intron 40.0%
GTTGAAATTTAGCCGTTCCA+GGG + tig0027598:34701-34720 Msa1434950:intron 40.0%
GAGATTGAGATGGTAGACAA+CGG - tig0027598:34755-34774 None:intergenic 40.0%
TTGGTAGATTGGATGAAAGC+TGG + tig0027598:35149-35168 Msa1434950:intron 40.0%
TGGTAGATTGGATGAAAGCT+GGG + tig0027598:35150-35169 Msa1434950:intron 40.0%
GACTGACATGGCTTAATAGA+TGG + tig0027598:35322-35341 Msa1434950:intron 40.0%
CTATTCATTGCACACTAGGA+TGG - tig0027598:35683-35702 None:intergenic 40.0%
TGACTGGGAGTAATTAAGGA+CGG - tig0027598:35735-35754 None:intergenic 40.0%
GCAATCTTTCCTCTTTGACT+GGG - tig0027598:35750-35769 None:intergenic 40.0%
AGCAATCTTTCCTCTTTGAC+TGG - tig0027598:35751-35770 None:intergenic 40.0%
GAAAGATTGCTACATAGCTC+CGG + tig0027598:35760-35779 Msa1434950:intron 40.0%
!! TGCTTTAGGATGTGCATTCT+CGG + tig0027598:35829-35848 Msa1434950:intron 40.0%
TATACTTATAAAGCCCGGAC+TGG + tig0027598:35969-35988 Msa1434950:CDS 40.0%
ATTGACTAAGCTGCTTGAAC+TGG - tig0027598:36094-36113 None:intergenic 40.0%
AGTTCAAGCAGCTTAGTCAA+TGG + tig0027598:36093-36112 Msa1434950:three_prime_UTR 40.0%
TGGTGGAGAAAGAGAAAGAG+GGG - tig0027598:31353-31372 None:intergenic 45.0%
! GTGGTGGAGAAAGAGAAAGA+GGG - tig0027598:31354-31373 None:intergenic 45.0%
!! AGAGTAGGGTTTGGGTTTTG+TGG - tig0027598:31410-31429 None:intergenic 45.0%
TGTAAGGATTCGGAGAAGGA+GGG - tig0027598:31496-31515 None:intergenic 45.0%
TTGTAAGGATTCGGAGAAGG+AGG - tig0027598:31497-31516 None:intergenic 45.0%
!! GAAGGTGTTGTGTTTGACGT+TGG - tig0027598:31547-31566 None:intergenic 45.0%
!!! TGGTTTTGGAACGGAAGCTT+TGG - tig0027598:31624-31643 None:intergenic 45.0%
TAGATCATCGGAATCAGGTG+CGG - tig0027598:31647-31666 None:intergenic 45.0%
GAAGAAGCCAATCTCGTTTC+AGG + tig0027598:31675-31694 Msa1434950:CDS 45.0%
TCGATCCAAAGATTCCGCTT+CGG + tig0027598:31720-31739 Msa1434950:CDS 45.0%
! AGTTTTCGACGTATCCGAAG+CGG - tig0027598:31737-31756 None:intergenic 45.0%
AAATTCGACGAATCAGACGC+CGG + tig0027598:31819-31838 Msa1434950:CDS 45.0%
CTATTCCCCGCTGACATATT+CGG - tig0027598:31862-31881 None:intergenic 45.0%
AATATGTCAGCGGGGAATAG+TGG + tig0027598:31862-31881 Msa1434950:CDS 45.0%
ATATGTCAGCGGGGAATAGT+GGG + tig0027598:31863-31882 Msa1434950:CDS 45.0%
!! TAGTGGGACGAGTTTGTTAC+CGG + tig0027598:31879-31898 Msa1434950:CDS 45.0%
TCCTTCCCAAACATCGAATC+CGG - tig0027598:31901-31920 None:intergenic 45.0%
CGATGTTTGGGAAGGAGATA+AGG + tig0027598:31905-31924 Msa1434950:CDS 45.0%
TTGGGAAGGAGATAAGGGAT+AGG + tig0027598:31911-31930 Msa1434950:CDS 45.0%
! GATAAGGGATAGGTTAGCCA+AGG + tig0027598:31921-31940 Msa1434950:CDS 45.0%
ACTCCCTGAATCATTCACCT+TGG - tig0027598:31941-31960 None:intergenic 45.0%
!! CAGGGAGTTTTGGTACTGTT+AGG + tig0027598:31953-31972 Msa1434950:CDS 45.0%
CTTCAACCTCTCACTCAACT+CGG - tig0027598:32058-32077 None:intergenic 45.0%
GTGAGAGGTTGAAGAAAGTG+AGG + tig0027598:32064-32083 Msa1434950:CDS 45.0%
ATAAAGCTCTTGCCAAGTGG+AGG + tig0027598:32937-32956 Msa1434950:intron 45.0%
TAAAGCTCTTGCCAAGTGGA+GGG + tig0027598:32938-32957 Msa1434950:intron 45.0%
AGGGTTGTGGTCATGTTGTA+AGG + tig0027598:32957-32976 Msa1434950:intron 45.0%
GATATGTTGTCCCTGATTGG+TGG + tig0027598:33044-33063 Msa1434950:CDS 45.0%
AACGTCAAAGTCAAAGCCTG+TGG + tig0027598:33221-33240 Msa1434950:intron 45.0%
CGGCCTACAACTCTCAATTA+CGG - tig0027598:33457-33476 None:intergenic 45.0%
TGAATTAACCTCGTGGTGTC+TGG + tig0027598:33487-33506 Msa1434950:intron 45.0%
TGCTTCACATGTCGATGGAT+AGG + tig0027598:33517-33536 Msa1434950:intron 45.0%
CAGCAGAGGACATGTTATCT+GGG - tig0027598:33620-33639 None:intergenic 45.0%
TCAGCAGAGGACATGTTATC+TGG - tig0027598:33621-33640 None:intergenic 45.0%
AAGATGTCCGAGTCAGATTG+TGG + tig0027598:33681-33700 Msa1434950:CDS 45.0%
TCTGCTCGTGTTCAAGGTAA+AGG + tig0027598:33705-33724 Msa1434950:intron 45.0%
GGTTATGATGACTCGCCATA+CGG - tig0027598:34294-34313 None:intergenic 45.0%
AAAAGCTTCCGAGGAATGCT+AGG + tig0027598:34569-34588 Msa1434950:intron 45.0%
AAAGCTTCCGAGGAATGCTA+GGG + tig0027598:34570-34589 Msa1434950:intron 45.0%
TGTATGACCCTAGCATTCCT+CGG - tig0027598:34580-34599 None:intergenic 45.0%
AACTTACAGGGCCAGTTAAC+TGG - tig0027598:34662-34681 None:intergenic 45.0%
AGATGGTAGACAACGGAAAG+CGG - tig0027598:34748-34767 None:intergenic 45.0%
! GTTTATGTAGCAAGCTCTGG+TGG + tig0027598:34827-34846 Msa1434950:intron 45.0%
GGTAGATTGGATGAAAGCTG+GGG + tig0027598:35151-35170 Msa1434950:intron 45.0%
! TTGCAAGAGCAGGACAGTTT+TGG + tig0027598:35214-35233 Msa1434950:intron 45.0%
CTGGAGATGGTGAGTATAGA+AGG + tig0027598:35243-35262 Msa1434950:intron 45.0%
AGGGCTATTCATTGCACACT+AGG - tig0027598:35687-35706 None:intergenic 45.0%
TAGGATGTGCATTCTCGGAA+AGG + tig0027598:35834-35853 Msa1434950:intron 45.0%
TCGGAAAGGTCTGATAGCAA+TGG + tig0027598:35848-35867 Msa1434950:CDS 45.0%
AATACCTCAGAAGAACCGAC+TGG + tig0027598:35895-35914 Msa1434950:CDS 45.0%
ATACCTCAGAAGAACCGACT+GGG + tig0027598:35896-35915 Msa1434950:CDS 45.0%
!! TAAAGCCCGGACTGGTAAAT+CGG + tig0027598:35977-35996 Msa1434950:CDS 45.0%
AGCAACACATTCTTCAGCCA+TGG - tig0027598:36158-36177 None:intergenic 45.0%
!! GGTGGTGGAGAAAGAGAAAG+AGG - tig0027598:31355-31374 None:intergenic 50.0%
TTCTCCACCACCACCAACAA+TGG + tig0027598:31363-31382 Msa1434950:exon 50.0%
!! AGAAGAAGCGCCATTGTTGG+TGG - tig0027598:31376-31395 None:intergenic 50.0%
! AGTGGTGGAGAGTAGGGTTT+GGG - tig0027598:31418-31437 None:intergenic 50.0%
! TGATGGAGTGGTGGAGAGTA+GGG - tig0027598:31424-31443 None:intergenic 50.0%
TCCAACTCCGGTGACAATGA+CGG + tig0027598:31457-31476 Msa1434950:CDS 50.0%
! TTTTGTTGCGAGGGAGAGAG+AGG - tig0027598:31571-31590 None:intergenic 50.0%
CGTATCCGAAGCGGAATCTT+TGG - tig0027598:31728-31747 None:intergenic 50.0%
ACGTCGAAAACTACCATCGG+TGG + tig0027598:31745-31764 Msa1434950:CDS 50.0%
TCGAAAACTACCATCGGTGG+TGG + tig0027598:31748-31767 Msa1434950:CDS 50.0%
! AAAACTACCATCGGTGGTGG+TGG + tig0027598:31751-31770 Msa1434950:CDS 50.0%
! AAACTACCATCGGTGGTGGT+GGG + tig0027598:31752-31771 Msa1434950:CDS 50.0%
GACATATTCGGTCTCCACCT+CGG - tig0027598:31850-31869 None:intergenic 50.0%
GTGGAGACCGAATATGTCAG+CGG + tig0027598:31852-31871 Msa1434950:CDS 50.0%
TGGAGACCGAATATGTCAGC+GGG + tig0027598:31853-31872 Msa1434950:CDS 50.0%
ACCGGATTCGATGTTTGGGA+AGG + tig0027598:31897-31916 Msa1434950:CDS 50.0%
GCGTCGCTATTCGACAACAT+CGG - tig0027598:32366-32385 None:intergenic 50.0%
GCTTGGAGTTCCACCAATCA+GGG - tig0027598:33057-33076 None:intergenic 50.0%
AGCTTGGAGTTCCACCAATC+AGG - tig0027598:33058-33077 None:intergenic 50.0%
! GGAGGCTTTGACAAGTAGCT+TGG - tig0027598:33074-33093 None:intergenic 50.0%
AGCAGAGCCACAATCTGACT+CGG - tig0027598:33691-33710 None:intergenic 50.0%
TGATGACTCGCCATACGGTA+GGG - tig0027598:34289-34308 None:intergenic 50.0%
ATGATGACTCGCCATACGGT+AGG - tig0027598:34290-34309 None:intergenic 50.0%
GATGGTAGACAACGGAAAGC+GGG - tig0027598:34747-34766 None:intergenic 50.0%
CCTGCTCTTGCAAGTTCTCT+TGG - tig0027598:35207-35226 None:intergenic 50.0%
CCAAGAGAACTTGCAAGAGC+AGG + tig0027598:35204-35223 Msa1434950:intron 50.0%
!! CAAGAGCAGGACAGTTTTGG+TGG + tig0027598:35217-35236 Msa1434950:intron 50.0%
!! AGGACAGTTTTGGTGGAGAC+TGG + tig0027598:35224-35243 Msa1434950:intron 50.0%
!! GTTTTGGTGGAGACTGGAGA+TGG + tig0027598:35230-35249 Msa1434950:intron 50.0%
GGGGTGGACAATGTAATCTG+CGG + tig0027598:35483-35502 Msa1434950:intron 50.0%
ATTGCTACATAGCTCCGGTC+TGG + tig0027598:35765-35784 Msa1434950:intron 50.0%
! AATCCCAGTCGGTTCTTCTG+AGG - tig0027598:35902-35921 None:intergenic 50.0%
!! AAAGCCCGGACTGGTAAATC+GGG + tig0027598:35978-35997 Msa1434950:CDS 50.0%
! GGCTAGTCAGACACTTAGAC+TGG - tig0027598:36073-36092 None:intergenic 50.0%
!! AGAAGCGCCATTGTTGGTGG+TGG - tig0027598:31373-31392 None:intergenic 55.0%
!! CGGAGAAGAAGCGCCATTGT+TGG - tig0027598:31379-31398 None:intergenic 55.0%
! GAGTGGTGGAGAGTAGGGTT+TGG - tig0027598:31419-31438 None:intergenic 55.0%
! GTGATGGAGTGGTGGAGAGT+AGG - tig0027598:31425-31444 None:intergenic 55.0%
!! GAGAAGAGGTGATGGAGTGG+TGG - tig0027598:31433-31452 None:intergenic 55.0%
!! GTGGAGAAGAGGTGATGGAG+TGG - tig0027598:31436-31455 None:intergenic 55.0%
TGGAGGTGGAGAAGAGGTGA+TGG - tig0027598:31441-31460 None:intergenic 55.0%
CTCTTCTCCACCTCCAACTC+CGG + tig0027598:31445-31464 Msa1434950:CDS 55.0%
ATTGTCACCGGAGTTGGAGG+TGG - tig0027598:31455-31474 None:intergenic 55.0%
GTCATTGTCACCGGAGTTGG+AGG - tig0027598:31458-31477 None:intergenic 55.0%
ACCGTCATTGTCACCGGAGT+TGG - tig0027598:31461-31480 None:intergenic 55.0%
AACTCCGGTGACAATGACGG+TGG + tig0027598:31460-31479 Msa1434950:CDS 55.0%
!!! CAGGTGCGGTGGTTTTGGAA+CGG - tig0027598:31633-31652 None:intergenic 55.0%
! GGAATCAGGTGCGGTGGTTT+TGG - tig0027598:31638-31657 None:intergenic 55.0%
ATCATCGGAATCAGGTGCGG+TGG - tig0027598:31644-31663 None:intergenic 55.0%
! AACTACCATCGGTGGTGGTG+GGG + tig0027598:31753-31772 Msa1434950:CDS 55.0%
GGAGACCGAATATGTCAGCG+GGG + tig0027598:31854-31873 Msa1434950:CDS 55.0%
! CGATTGCCGAGTTGAGTGAG+AGG + tig0027598:32049-32068 Msa1434950:CDS 55.0%
GTGATGTCAATCGCGGATCG+CGG - tig0027598:32829-32848 None:intergenic 55.0%
TCTTGCCAAGTGGAGGGTTG+TGG + tig0027598:32944-32963 Msa1434950:intron 55.0%
CATGACCACAACCCTCCACT+TGG - tig0027598:32952-32971 None:intergenic 55.0%
! TGTGGCTCTGCTCGTGTTCA+AGG + tig0027598:33699-33718 Msa1434950:CDS 55.0%
GTGGAGATGAGACCCTGGAA+CGG - tig0027598:34716-34735 None:intergenic 55.0%
GTCACCCGATTTACCAGTCC+GGG - tig0027598:35985-36004 None:intergenic 55.0%
CGTCACCCGATTTACCAGTC+CGG - tig0027598:35986-36005 None:intergenic 55.0%
!! AGCGCCATTGTTGGTGGTGG+TGG - tig0027598:31370-31389 None:intergenic 60.0%
CGGAGTTGGAGGTGGAGAAG+AGG - tig0027598:31447-31466 None:intergenic 60.0%
GTCGCCACCGTCATTGTCAC+CGG - tig0027598:31467-31486 None:intergenic 60.0%
TGCGAGGGAGAGAGAGGAGA+AGG - tig0027598:31565-31584 None:intergenic 60.0%
!! ACTACCATCGGTGGTGGTGG+GGG + tig0027598:31754-31773 Msa1434950:CDS 60.0%
AATACCCCCACCACCACCGA+TGG - tig0027598:31761-31780 None:intergenic 60.0%
!! ATCGGTGGTGGTGGGGGTAT+TGG + tig0027598:31760-31779 Msa1434950:CDS 60.0%
! TTTTGTGAAGGGGGCCGCAG+TGG + tig0027598:34367-34386 Msa1434950:intron 60.0%
GTGTCGTGGAGATGAGACCC+TGG - tig0027598:34721-34740 None:intergenic 60.0%
ATCAGACGCCGGTGACGCCG+AGG + tig0027598:31830-31849 Msa1434950:CDS 70.0%
GGTCTCCACCTCGGCGTCAC+CGG - tig0027598:31841-31860 None:intergenic 70.0%
! CGGAAAGCGGGCTCGTGTCG+TGG - tig0027598:34735-34754 None:intergenic 70.0%
AGACGCCGGTGACGCCGAGG+TGG + tig0027598:31833-31852 Msa1434950:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0027598 gene 31310 36385 31310 ID=Msa1434950;Name=Msa1434950
tig0027598 mRNA 31310 36385 31310 ID=Msa1434950-mRNA-1;Parent=Msa1434950;Name=Msa1434950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=72|0.6|0.66|0.83|1|1|6|369|444
tig0027598 exon 31310 32213 31310 ID=Msa1434950-mRNA-1:exon:9400;Parent=Msa1434950-mRNA-1
tig0027598 exon 33033 33123 33033 ID=Msa1434950-mRNA-1:exon:9401;Parent=Msa1434950-mRNA-1
tig0027598 exon 33389 33455 33389 ID=Msa1434950-mRNA-1:exon:9402;Parent=Msa1434950-mRNA-1
tig0027598 exon 33609 33720 33609 ID=Msa1434950-mRNA-1:exon:9403;Parent=Msa1434950-mRNA-1
tig0027598 exon 33901 33953 33901 ID=Msa1434950-mRNA-1:exon:9404;Parent=Msa1434950-mRNA-1
tig0027598 exon 35837 36385 35837 ID=Msa1434950-mRNA-1:exon:9405;Parent=Msa1434950-mRNA-1
tig0027598 five_prime_UTR 31310 31381 31310 ID=Msa1434950-mRNA-1:five_prime_utr;Parent=Msa1434950-mRNA-1
tig0027598 CDS 31382 32213 31382 ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1
tig0027598 CDS 33033 33123 33033 ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1
tig0027598 CDS 33389 33455 33389 ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1
tig0027598 CDS 33609 33720 33609 ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1
tig0027598 CDS 33901 33953 33901 ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1
tig0027598 CDS 35837 36016 35837 ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1
tig0027598 three_prime_UTR 36017 36385 36017 ID=Msa1434950-mRNA-1:three_prime_utr;Parent=Msa1434950-mRNA-1
Gene Sequence

>Msa1434950

ATGGCGCTTCTTCTCCGTCTCAAAACCACAAAACCCAAACCCTACTCTCCACCACTCCATCACCTCTTCTCCACCTCCAACTCCGGTGACAATGACGGTGGCGACAAAAAACCCTCCTTCTCCGAATCCTTACAACAAGTCAGAAGCTCATTCAAACAACAACCAACGTCAAACACAACACCTTCTCCTCTCTCTCCCTCGCAACAAAACGAATCCAAAGATGATATCTTGAGCAAAATCCAAAGCTTCCGTTCCAAAACCACCGCACCTGATTCCGATGATCTATTAACTCAGAAGAAGCCAATCTCGTTTCAGGATATGTATAGTAGAATGCATAATCGATCCAAAGATTCCGCTTCGGATACGTCGAAAACTACCATCGGTGGTGGTGGGGGTATTGGACTTGATGTGATTCGTGGAAGTTTAAATCAGCTGAAAAATTCGACGAATCAGACGCCGGTGACGCCGAGGTGGAGACCGAATATGTCAGCGGGGAATAGTGGGACGAGTTTGTTACCGGATTCGATGTTTGGGAAGGAGATAAGGGATAGGTTAGCCAAGGTGAATGATTCAGGGAGTTTTGGTACTGTTAGGTTATATATGCATGGTGAATTAGGTGAGAAATTGAAGAAATTGAGACCTCAAGTGAAAGGAAAAGATTGGTTTTCGATTGCCGAGTTGAGTGAGAGGTTGAAGAAAGTGAGGGAAATGGATGAAATTGAAGCTAAGTCGAGTAAATCTAGTGCCGATACAAATAAAGTGTTCAACATTTTGAAAGATTCTGTTCAACATATCAAAGCTAAAGAAGCTGAGAAACCTAATAAAGCTTCATCGCAGAGAATTGATATGTTGTCCCTGATTGGTGGAACTCCAAGCTACTTGTCAAAGCCTCCTAAAGAGCATCTTGTTGAAAAGGCAAGCATCCTCATGATGAAATTCATCAAGTTATTGTCCATCTCTTGCTATTTGTTGATTGCTTTGGTCATTTCCTACTTTCACCCAGATAACATGTCCTCTGCTGAAAAATTGAAAATTGAGCTGACAAAGGTTAGAGATGAATTTAAGATGTCCGAGTCAGATTGTGGCTCTGCTCGTGTTCAAGTTGCGACACTGACAACCAAGATTAAGCATCTATCATCAGTTCTACACAAGAAGGATGTGCATTCTCGGAAAGGTCTGATAGCAATGGTTCAAAAGAGGAAAAAGTTGCTGAAATACCTCAGAAGAACCGACTGGGATTCCTATTGTTTTGTTCTCTCTAAGTTAGGTCTACGTGATAATCCAGAATATACTTATAAAGCCCGGACTGGTAAATCGGGTGACGTAGCCAATTAA

Protein sequence

>Msa1434950

MALLLRLKTTKPKPYSPPLHHLFSTSNSGDNDGGDKKPSFSESLQQVRSSFKQQPTSNTTPSPLSPSQQNESKDDILSKIQSFRSKTTAPDSDDLLTQKKPISFQDMYSRMHNRSKDSASDTSKTTIGGGGGIGLDVIRGSLNQLKNSTNQTPVTPRWRPNMSAGNSGTSLLPDSMFGKEIRDRLAKVNDSGSFGTVRLYMHGELGEKLKKLRPQVKGKDWFSIAELSERLKKVREMDEIEAKSSKSSADTNKVFNILKDSVQHIKAKEAEKPNKASSQRIDMLSLIGGTPSYLSKPPKEHLVEKASILMMKFIKLLSISCYLLIALVISYFHPDNMSSAEKLKIELTKVRDEFKMSESDCGSARVQVATLTTKIKHLSSVLHKKDVHSRKGLIAMVQKRKKLLKYLRRTDWDSYCFVLSKLGLRDNPEYTYKARTGKSGDVAN*