Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1434950 | XP_003604299.2 | 88.000 | 450 | 21 | 5 | 1 | 444 | 1 | 423 | 0.0 | 730 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1434950 | sp|B7IFB5|RS15_THEAB | 54.667 | 75 | 32 | 1 | 353 | 425 | 9 | 83 | 3.55e-18 | 82.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1434950 | G7JFN7 | 88.000 | 450 | 21 | 5 | 1 | 444 | 1 | 423 | 0.0 | 730 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003720 | Msa1434950 | 0.819721 | 1.000936e-52 | -8.615850e-47 |
Msa0105370 | Msa1434950 | 0.836644 | 8.294565e-57 | -8.615850e-47 |
Msa1374060 | Msa1434950 | 0.802128 | 6.499371e-49 | -8.615850e-47 |
Msa1382560 | Msa1434950 | 0.803613 | 3.207128e-49 | -8.615850e-47 |
Msa1411970 | Msa1434950 | 0.836424 | 9.433330e-57 | -8.615850e-47 |
Msa1413620 | Msa1434950 | 0.805919 | 1.057963e-49 | -8.615850e-47 |
Msa1434950 | Msa1443300 | 0.809283 | 2.042776e-50 | -8.615850e-47 |
Msa0626630 | Msa1434950 | 0.936277 | 2.247215e-97 | -8.615850e-47 |
Msa0664750 | Msa1434950 | 0.930162 | 2.446314e-93 | -8.615850e-47 |
Msa0188690 | Msa1434950 | 0.815579 | 8.600167e-52 | -8.615850e-47 |
Msa0209140 | Msa1434950 | 0.813204 | 2.881530e-51 | -8.615850e-47 |
Msa1105460 | Msa1434950 | 0.813711 | 2.228771e-51 | -8.615850e-47 |
Msa0258390 | Msa1434950 | 0.809283 | 2.042776e-50 | -8.615850e-47 |
Msa0261170 | Msa1434950 | 0.802913 | 4.477546e-49 | -8.615850e-47 |
Msa0307850 | Msa1434950 | 0.805599 | 1.234991e-49 | -8.615850e-47 |
Msa0357900 | Msa1434950 | 0.817444 | 3.286941e-52 | -8.615850e-47 |
Msa1148910 | Msa1434950 | 0.829278 | 5.629005e-55 | -8.615850e-47 |
Msa1174780 | Msa1434950 | 0.800094 | 1.693338e-48 | -8.615850e-47 |
Msa1209200 | Msa1434950 | 0.808985 | 2.365928e-50 | -8.615850e-47 |
Msa0531230 | Msa1434950 | 0.824738 | 6.860691e-54 | -8.615850e-47 |
Msa0578140 | Msa1434950 | 0.949301 | 1.679932e-107 | -8.615850e-47 |
Msa0581280 | Msa1434950 | 0.810104 | 1.360776e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1434950 | MtrunA17_Chr4g0002731 | 88.000 | 450 | 21 | 5 | 1 | 444 | 1 | 423 | 0.0 | 730 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1434950 | AT1G15810.1 | 55.365 | 233 | 69 | 4 | 199 | 430 | 219 | 417 | 8.52e-76 | 243 |
Msa1434950 | AT1G80620.1 | 39.073 | 453 | 187 | 14 | 16 | 432 | 15 | 414 | 8.90e-76 | 243 |
Find 136 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGATTTAGGTTTAATTTA+TGG | 0.101635 | tig0027598:+36242 | Msa1434950:three_prime_UTR |
AATATTTCTTGTATCATAAT+TGG | 0.161540 | tig0027598:+36327 | Msa1434950:three_prime_UTR |
GAAGAAGCCAATCTCGTTTC+AGG | 0.197152 | tig0027598:+31675 | Msa1434950:CDS |
TCAGCAGAGGACATGTTATC+TGG | 0.221149 | tig0027598:-33618 | None:intergenic |
TATGTTGGGGTTTATTTAAT+TGG | 0.228847 | tig0027598:-36009 | None:intergenic |
TTTGCTCAAGATATCATCTT+TGG | 0.250670 | tig0027598:-31596 | None:intergenic |
GGAATCAGGTGCGGTGGTTT+TGG | 0.276997 | tig0027598:-31635 | None:intergenic |
CGGGCTTTATAAGTATATTC+TGG | 0.291890 | tig0027598:-35963 | None:intergenic |
TTAGCCAAGGTGAATGATTC+AGG | 0.297727 | tig0027598:+31934 | Msa1434950:CDS |
GTGAATGATTCAGGGAGTTT+TGG | 0.301942 | tig0027598:+31943 | Msa1434950:CDS |
CGTATCCGAAGCGGAATCTT+TGG | 0.307010 | tig0027598:-31725 | None:intergenic |
TTGCTATTTGTTGATTGCTT+TGG | 0.309603 | tig0027598:+33425 | Msa1434950:CDS |
TTATATATGCATGGTGAATT+AGG | 0.318193 | tig0027598:+31976 | Msa1434950:CDS |
TACTAACATGAAGCTTTATT+AGG | 0.327657 | tig0027598:-32198 | None:intergenic |
TTGTTACCGGATTCGATGTT+TGG | 0.341309 | tig0027598:+31892 | Msa1434950:CDS |
AGTGGTGGAGAGTAGGGTTT+GGG | 0.342066 | tig0027598:-31415 | None:intergenic |
ATTCTTCAGCCATGGATATA+TGG | 0.342367 | tig0027598:-36147 | None:intergenic |
CGATGTTTGGGAAGGAGATA+AGG | 0.345042 | tig0027598:+31905 | Msa1434950:CDS |
ACACTTGTAGAAGCAAAATA+TGG | 0.357125 | tig0027598:-36120 | None:intergenic |
AGCTTGGAGTTCCACCAATC+AGG | 0.379248 | tig0027598:-33055 | None:intergenic |
TCTTGTATCATAATTGGAAA+TGG | 0.387100 | tig0027598:+36333 | Msa1434950:three_prime_UTR |
TAAAGCCCGGACTGGTAAAT+CGG | 0.389131 | tig0027598:+35977 | Msa1434950:CDS |
TCTGACTTGTTGTAAGGATT+CGG | 0.391613 | tig0027598:-31503 | None:intergenic |
AATATGTCAGCGGGGAATAG+TGG | 0.398052 | tig0027598:+31862 | Msa1434950:CDS |
TGATGGAGTGGTGGAGAGTA+GGG | 0.398977 | tig0027598:-31421 | None:intergenic |
CTATTCCCCGCTGACATATT+CGG | 0.403136 | tig0027598:-31859 | None:intergenic |
TAGTGGGACGAGTTTGTTAC+CGG | 0.405301 | tig0027598:+31879 | Msa1434950:CDS |
GCTTAGGAAATAATTCTGTT+TGG | 0.411342 | tig0027598:+36365 | Msa1434950:three_prime_UTR |
GAGTGGTGGAGAGTAGGGTT+TGG | 0.415098 | tig0027598:-31416 | None:intergenic |
GTGATGGAGTGGTGGAGAGT+AGG | 0.417770 | tig0027598:-31422 | None:intergenic |
TGCTTTAGGATGTGCATTCT+CGG | 0.419325 | tig0027598:+35829 | Msa1434950:intron |
TGTGGCTCTGCTCGTGTTCA+AGG | 0.419529 | tig0027598:+33699 | Msa1434950:CDS |
TAAAGAGCATCTTGTTGAAA+AGG | 0.423407 | tig0027598:+33094 | Msa1434950:CDS |
CTTAGAGAGAACAAAACAAT+AGG | 0.423531 | tig0027598:-35922 | None:intergenic |
CCATAAATTAAACCTAAATC+AGG | 0.428382 | tig0027598:-36242 | None:intergenic |
CTACAAAATAAACAATTGAT+TGG | 0.428999 | tig0027598:-36279 | None:intergenic |
CTCAAGTGAAAGGAAAAGAT+TGG | 0.434328 | tig0027598:+32022 | Msa1434950:CDS |
GTTAATAGATCATCGGAATC+AGG | 0.434445 | tig0027598:-31649 | None:intergenic |
TGGAGGTGGAGAAGAGGTGA+TGG | 0.434925 | tig0027598:-31438 | None:intergenic |
AAAACTACCATCGGTGGTGG+TGG | 0.439256 | tig0027598:+31751 | Msa1434950:CDS |
GTTGAAGAAAGTGAGGGAAA+TGG | 0.440483 | tig0027598:+32071 | Msa1434950:CDS |
TGTTACCGGATTCGATGTTT+GGG | 0.445980 | tig0027598:+31893 | Msa1434950:CDS |
ATTGACTAAGCTGCTTGAAC+TGG | 0.450433 | tig0027598:-36091 | None:intergenic |
TGATGATAGATGCTTAATCT+TGG | 0.455799 | tig0027598:-33916 | None:intergenic |
GATGTTTGGGAAGGAGATAA+GGG | 0.455958 | tig0027598:+31906 | Msa1434950:CDS |
GGTCTCCACCTCGGCGTCAC+CGG | 0.457444 | tig0027598:-31838 | None:intergenic |
CTCTTCTCCACCTCCAACTC+CGG | 0.457603 | tig0027598:+31445 | Msa1434950:CDS |
GAAATGGATAAATGAAGCTT+AGG | 0.459164 | tig0027598:+36349 | Msa1434950:three_prime_UTR |
ACCGTCATTGTCACCGGAGT+TGG | 0.459507 | tig0027598:-31458 | None:intergenic |
GTTGAACACTTTATTTGTAT+CGG | 0.460097 | tig0027598:-32127 | None:intergenic |
AACTACCATCGGTGGTGGTG+GGG | 0.461512 | tig0027598:+31753 | Msa1434950:CDS |
AGCGCCATTGTTGGTGGTGG+TGG | 0.462114 | tig0027598:-31367 | None:intergenic |
GGAGGCTTTGACAAGTAGCT+TGG | 0.462551 | tig0027598:-33071 | None:intergenic |
ATTGATATGTTGTCCCTGAT+TGG | 0.468754 | tig0027598:+33041 | Msa1434950:CDS |
TACATATCCTGAAACGAGAT+TGG | 0.469151 | tig0027598:-31682 | None:intergenic |
ACTACCATCGGTGGTGGTGG+GGG | 0.471057 | tig0027598:+31754 | Msa1434950:CDS |
TGAGCTTCTGACTTGTTGTA+AGG | 0.477275 | tig0027598:-31509 | None:intergenic |
CGGAGAAGAAGCGCCATTGT+TGG | 0.491513 | tig0027598:-31376 | None:intergenic |
AAACTACCATCGGTGGTGGT+GGG | 0.493683 | tig0027598:+31752 | Msa1434950:CDS |
TGCGAGGGAGAGAGAGGAGA+AGG | 0.494280 | tig0027598:-31562 | None:intergenic |
TCCTTCCCAAACATCGAATC+CGG | 0.494755 | tig0027598:-31898 | None:intergenic |
GTCGCCACCGTCATTGTCAC+CGG | 0.497517 | tig0027598:-31464 | None:intergenic |
AGTTCAAGCAGCTTAGTCAA+TGG | 0.497786 | tig0027598:+36093 | Msa1434950:three_prime_UTR |
GTGAGAGGTTGAAGAAAGTG+AGG | 0.507809 | tig0027598:+32064 | Msa1434950:CDS |
GTCATTGTCACCGGAGTTGG+AGG | 0.510211 | tig0027598:-31455 | None:intergenic |
CAGCAGAGGACATGTTATCT+GGG | 0.517850 | tig0027598:-33617 | None:intergenic |
TTAGACTGGATAAAATCAGC+TGG | 0.522482 | tig0027598:-36056 | None:intergenic |
ATTGTCACCGGAGTTGGAGG+TGG | 0.527310 | tig0027598:-31452 | None:intergenic |
GGTGGTGGAGAAAGAGAAAG+AGG | 0.528464 | tig0027598:-31352 | None:intergenic |
AAAGCCCGGACTGGTAAATC+GGG | 0.529645 | tig0027598:+35978 | Msa1434950:CDS |
GTGGAGAAGAGGTGATGGAG+TGG | 0.532903 | tig0027598:-31433 | None:intergenic |
ATATGTCAGCGGGGAATAGT+GGG | 0.534656 | tig0027598:+31863 | Msa1434950:CDS |
TCAACAAGATGCTCTTTAGG+AGG | 0.535728 | tig0027598:-33089 | None:intergenic |
GGCTAGTCAGACACTTAGAC+TGG | 0.536045 | tig0027598:-36070 | None:intergenic |
TGGAGACCGAATATGTCAGC+GGG | 0.537439 | tig0027598:+31853 | Msa1434950:CDS |
GAGAAGAGGTGATGGAGTGG+TGG | 0.540124 | tig0027598:-31430 | None:intergenic |
AGAAGAAGCGCCATTGTTGG+TGG | 0.541690 | tig0027598:-31373 | None:intergenic |
CTTCTGAGTTAATAGATCAT+CGG | 0.542609 | tig0027598:-31656 | None:intergenic |
TAGGATGTGCATTCTCGGAA+AGG | 0.545917 | tig0027598:+35834 | Msa1434950:intron |
GCTTGGAGTTCCACCAATCA+GGG | 0.546915 | tig0027598:-33054 | None:intergenic |
TTCTCCACCACCACCAACAA+TGG | 0.548692 | tig0027598:+31363 | Msa1434950:exon |
TGTAAGGATTCGGAGAAGGA+GGG | 0.550289 | tig0027598:-31493 | None:intergenic |
ATCATCAGTTCTACACAAGA+AGG | 0.554571 | tig0027598:+33932 | Msa1434950:CDS |
CTTCAACCTCTCACTCAACT+CGG | 0.554778 | tig0027598:-32055 | None:intergenic |
GTCACCCGATTTACCAGTCC+GGG | 0.556020 | tig0027598:-35982 | None:intergenic |
CGATTGCCGAGTTGAGTGAG+AGG | 0.557053 | tig0027598:+32049 | Msa1434950:CDS |
TTGTAAGGATTCGGAGAAGG+AGG | 0.557469 | tig0027598:-31494 | None:intergenic |
CGGAGTTGGAGGTGGAGAAG+AGG | 0.562478 | tig0027598:-31444 | None:intergenic |
AGCAACACATTCTTCAGCCA+TGG | 0.562640 | tig0027598:-36155 | None:intergenic |
ACCGGATTCGATGTTTGGGA+AGG | 0.563280 | tig0027598:+31897 | Msa1434950:CDS |
TGATAGCAATGGTTCAAAAG+AGG | 0.564231 | tig0027598:+35859 | Msa1434950:CDS |
TTGTTGTAAGGATTCGGAGA+AGG | 0.565751 | tig0027598:-31497 | None:intergenic |
TAGCCAAGGTGAATGATTCA+GGG | 0.570378 | tig0027598:+31935 | Msa1434950:CDS |
CGTCACCCGATTTACCAGTC+CGG | 0.571673 | tig0027598:-35983 | None:intergenic |
GAAGGTGTTGTGTTTGACGT+TGG | 0.572394 | tig0027598:-31544 | None:intergenic |
TCGATCCAAAGATTCCGCTT+CGG | 0.574006 | tig0027598:+31720 | Msa1434950:CDS |
ATTGGACTTGATGTGATTCG+TGG | 0.579464 | tig0027598:+31778 | Msa1434950:CDS |
AAGATGTCCGAGTCAGATTG+TGG | 0.579927 | tig0027598:+33681 | Msa1434950:CDS |
CAGAATATACTTATAAAGCC+CGG | 0.580244 | tig0027598:+35964 | Msa1434950:CDS |
TGGTGGAGAAAGAGAAAGAG+GGG | 0.580844 | tig0027598:-31350 | None:intergenic |
TGAGAGGTTGAAGAAAGTGA+GGG | 0.583053 | tig0027598:+32065 | Msa1434950:CDS |
GTGGTGGAGAAAGAGAAAGA+GGG | 0.584438 | tig0027598:-31351 | None:intergenic |
ACTTGATGAATTTCATCATG+AGG | 0.585281 | tig0027598:-33389 | None:intergenic |
TATACTTATAAAGCCCGGAC+TGG | 0.588412 | tig0027598:+35969 | Msa1434950:CDS |
TTGGGAAGGAGATAAGGGAT+AGG | 0.591410 | tig0027598:+31911 | Msa1434950:CDS |
AAATTGAGACCTCAAGTGAA+AGG | 0.593143 | tig0027598:+32012 | Msa1434950:CDS |
ATTGAAAATTGAGCTGACAA+AGG | 0.594958 | tig0027598:+33644 | Msa1434950:CDS |
AATCCCAGTCGGTTCTTCTG+AGG | 0.595536 | tig0027598:-35899 | None:intergenic |
TCGAAAACTACCATCGGTGG+TGG | 0.596020 | tig0027598:+31748 | Msa1434950:CDS |
AATACCTCAGAAGAACCGAC+TGG | 0.596907 | tig0027598:+35895 | Msa1434950:CDS |
AATCAACAAATAGCAAGAGA+TGG | 0.599289 | tig0027598:-33418 | None:intergenic |
AGTGTTGTTCCATATATCCA+TGG | 0.599971 | tig0027598:+36138 | Msa1434950:three_prime_UTR |
GATAAGGGATAGGTTAGCCA+AGG | 0.602083 | tig0027598:+31921 | Msa1434950:CDS |
AGAAGCGCCATTGTTGGTGG+TGG | 0.602122 | tig0027598:-31370 | None:intergenic |
TCCAACTCCGGTGACAATGA+CGG | 0.604175 | tig0027598:+31457 | Msa1434950:CDS |
GATATGTTGTCCCTGATTGG+TGG | 0.604709 | tig0027598:+33044 | Msa1434950:CDS |
GACATATTCGGTCTCCACCT+CGG | 0.607216 | tig0027598:-31847 | None:intergenic |
TAGACTGGATAAAATCAGCT+GGG | 0.619439 | tig0027598:-36055 | None:intergenic |
AGACGCCGGTGACGCCGAGG+TGG | 0.621545 | tig0027598:+31833 | Msa1434950:CDS |
AGCAGAGCCACAATCTGACT+CGG | 0.621918 | tig0027598:-33688 | None:intergenic |
ATCATCGGAATCAGGTGCGG+TGG | 0.623646 | tig0027598:-31641 | None:intergenic |
ACTCCCTGAATCATTCACCT+TGG | 0.637166 | tig0027598:-31938 | None:intergenic |
ACTGTTAGGTTATATATGCA+TGG | 0.640796 | tig0027598:+31967 | Msa1434950:CDS |
TCGGAAAGGTCTGATAGCAA+TGG | 0.642289 | tig0027598:+35848 | Msa1434950:CDS |
ATCAGACGCCGGTGACGCCG+AGG | 0.642782 | tig0027598:+31830 | Msa1434950:CDS |
GATACGTCGAAAACTACCAT+CGG | 0.667277 | tig0027598:+31742 | Msa1434950:CDS |
TGATACAAGAAATATTACGA+TGG | 0.667765 | tig0027598:-36320 | None:intergenic |
ATACCTCAGAAGAACCGACT+GGG | 0.671133 | tig0027598:+35896 | Msa1434950:CDS |
TAGATCATCGGAATCAGGTG+CGG | 0.679666 | tig0027598:-31644 | None:intergenic |
AAATTCGACGAATCAGACGC+CGG | 0.695623 | tig0027598:+31819 | Msa1434950:CDS |
ACGTCGAAAACTACCATCGG+TGG | 0.701049 | tig0027598:+31745 | Msa1434950:CDS |
GTGGAGACCGAATATGTCAG+CGG | 0.711187 | tig0027598:+31852 | Msa1434950:CDS |
AAAACAATAGGAATCCCAGT+CGG | 0.725069 | tig0027598:-35910 | None:intergenic |
AACTCCGGTGACAATGACGG+TGG | 0.731984 | tig0027598:+31460 | Msa1434950:CDS |
TTACGATGGAAAAGACAACA+AGG | 0.736796 | tig0027598:-36306 | None:intergenic |
GGAGACCGAATATGTCAGCG+GGG | 0.770843 | tig0027598:+31854 | Msa1434950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATAAATCTATTGTAGA+TGG | + | tig0027598:32902-32921 | Msa1434950:intron | 15.0% |
!! | TATATGAAAAATATAAGTGA+TGG | + | tig0027598:32997-33016 | Msa1434950:intron | 15.0% |
!! | AATATATTAATGTTTGACTA+TGG | - | tig0027598:33330-33349 | None:intergenic | 15.0% |
!!! | TTCTTTTAAATCTAGTATAA+CGG | + | tig0027598:34128-34147 | Msa1434950:intron | 15.0% |
!!! | TTTTTGAATTTTAAGTTTGT+TGG | - | tig0027598:35078-35097 | None:intergenic | 15.0% |
!!! | TCTATTTTTAATCATGTAAT+TGG | - | tig0027598:35304-35323 | None:intergenic | 15.0% |
!!! | TTTTTCAATTAGTTTATGTT+GGG | - | tig0027598:36026-36045 | None:intergenic | 15.0% |
!!! | TTTTTTCAATTAGTTTATGT+TGG | - | tig0027598:36027-36046 | None:intergenic | 15.0% |
!! | AATATTTCTTGTATCATAAT+TGG | + | tig0027598:36327-36346 | Msa1434950:three_prime_UTR | 15.0% |
!! | TTTATCATTGATACTAGATA+AGG | + | tig0027598:32495-32514 | Msa1434950:intron | 20.0% |
!! | ATGACCAAAATATATTTGTT+TGG | - | tig0027598:32676-32695 | None:intergenic | 20.0% |
!!! | AACAAATATATTTTGGTCAT+AGG | + | tig0027598:32676-32695 | Msa1434950:intron | 20.0% |
!!! | ACAAATATATTTTGGTCATA+GGG | + | tig0027598:32677-32696 | Msa1434950:intron | 20.0% |
!!! | AGCATTTTAGATTAATTGAA+TGG | - | tig0027598:33285-33304 | None:intergenic | 20.0% |
!! | TAATAGCTTAAAAAAAAGTG+GGG | - | tig0027598:33366-33385 | None:intergenic | 20.0% |
!! | GTAATAGCTTAAAAAAAAGT+GGG | - | tig0027598:33367-33386 | None:intergenic | 20.0% |
!! | TGTAATAGCTTAAAAAAAAG+TGG | - | tig0027598:33368-33387 | None:intergenic | 20.0% |
!! | TGTTCGATATTAAATTTAGA+CGG | + | tig0027598:33758-33777 | Msa1434950:intron | 20.0% |
!! | TAAAGTATAGCAAACATATT+TGG | - | tig0027598:33786-33805 | None:intergenic | 20.0% |
!!! | TACTAATTTTCTTTCATGAT+TGG | + | tig0027598:33804-33823 | Msa1434950:intron | 20.0% |
!!! | AGTGTTTGGAATATATTAAT+AGG | + | tig0027598:33831-33850 | Msa1434950:intron | 20.0% |
!! | AAAAAAATTAGTACTAGAGT+TGG | - | tig0027598:34257-34276 | None:intergenic | 20.0% |
!! | GAATATTTATAAAGTTGTAC+AGG | - | tig0027598:34445-34464 | None:intergenic | 20.0% |
!! | ACTTTATAAATATTCTGCAA+AGG | + | tig0027598:34450-34469 | Msa1434950:intron | 20.0% |
!! | CTGGTAAAGATTAAAAATAA+GGG | - | tig0027598:34643-34662 | None:intergenic | 20.0% |
!! | ACTGGTAAAGATTAAAAATA+AGG | - | tig0027598:34644-34663 | None:intergenic | 20.0% |
!!! | GAAAATTGTTTTAGTTAACA+TGG | - | tig0027598:34853-34872 | None:intergenic | 20.0% |
!!! | TGTTAACTAAAACAATTTTC+AGG | + | tig0027598:34853-34872 | Msa1434950:intron | 20.0% |
!! | TCATAAAAATCATAGCTTAA+AGG | + | tig0027598:34959-34978 | Msa1434950:intron | 20.0% |
!!! | ACAATATTCTTTTACTAAGA+TGG | - | tig0027598:35130-35149 | None:intergenic | 20.0% |
!! | TCTTAGTAAAAGAATATTGT+TGG | + | tig0027598:35130-35149 | Msa1434950:intron | 20.0% |
!! | TTATGAGAAATGAAATACTA+GGG | - | tig0027598:35387-35406 | None:intergenic | 20.0% |
!! | TGAACATAAGAATTTAATCA+GGG | - | tig0027598:35520-35539 | None:intergenic | 20.0% |
!! | ATGAACATAAGAATTTAATC+AGG | - | tig0027598:35521-35540 | None:intergenic | 20.0% |
!! | CCAATTCAAAATTATATTGA+AGG | - | tig0027598:35585-35604 | None:intergenic | 20.0% |
!!! | CCTTCAATATAATTTTGAAT+TGG | + | tig0027598:35582-35601 | Msa1434950:intron | 20.0% |
!!! | TTTTCAATTAGTTTATGTTG+GGG | - | tig0027598:36025-36044 | None:intergenic | 20.0% |
!! | TCAGGCAAAAATAATATAAT+GGG | - | tig0027598:36227-36246 | None:intergenic | 20.0% |
!! | ATCAGGCAAAAATAATATAA+TGG | - | tig0027598:36228-36247 | None:intergenic | 20.0% |
!!! | ATATTATTTTTGCCTGATTT+AGG | + | tig0027598:36230-36249 | Msa1434950:three_prime_UTR | 20.0% |
!! | CTACAAAATAAACAATTGAT+TGG | - | tig0027598:36282-36301 | None:intergenic | 20.0% |
!!! | CAATCAATTGTTTATTTTGT+AGG | + | tig0027598:36280-36299 | Msa1434950:three_prime_UTR | 20.0% |
! | TTATATATGCATGGTGAATT+AGG | + | tig0027598:31976-31995 | Msa1434950:CDS | 25.0% |
!! | GTTGAACACTTTATTTGTAT+CGG | - | tig0027598:32130-32149 | None:intergenic | 25.0% |
!!! | TACTAACATGAAGCTTTATT+AGG | - | tig0027598:32201-32220 | None:intergenic | 25.0% |
! | ATCATCGTATCATAACTAAA+AGG | - | tig0027598:32278-32297 | None:intergenic | 25.0% |
!!! | TTGTTTTGCAATACATGTTT+AGG | + | tig0027598:32417-32436 | Msa1434950:intron | 25.0% |
! | CTATGTTTGGTAAAAAATAG+TGG | + | tig0027598:32440-32459 | Msa1434950:intron | 25.0% |
!!! | CTCATAGTTGATAAATTAGT+GGG | + | tig0027598:32540-32559 | Msa1434950:intron | 25.0% |
!!! | ACAAGTTTAAGCTTTTTTAC+TGG | - | tig0027598:32639-32658 | None:intergenic | 25.0% |
!! | TGTGCCAAACAAATATATTT+TGG | + | tig0027598:32669-32688 | Msa1434950:intron | 25.0% |
!!! | CAAATATATTTTGGTCATAG+GGG | + | tig0027598:32678-32697 | Msa1434950:intron | 25.0% |
! | ATTGACAACACTTTATACTA+AGG | - | tig0027598:32753-32772 | None:intergenic | 25.0% |
!!! | AGTATAAAGTGTTGTCAATT+AGG | + | tig0027598:32754-32773 | Msa1434950:intron | 25.0% |
!!! | GTATAAAGTGTTGTCAATTA+GGG | + | tig0027598:32755-32774 | Msa1434950:intron | 25.0% |
!!! | TATAAAGTGTTGTCAATTAG+GGG | + | tig0027598:32756-32775 | Msa1434950:intron | 25.0% |
! | AATATAGAGTTATAAACCAC+AGG | - | tig0027598:33240-33259 | None:intergenic | 25.0% |
! | GGTTAATTCAAAATATCAAG+CGG | - | tig0027598:33477-33496 | None:intergenic | 25.0% |
!!! | GGCACATTTTGTTTTTTTAA+TGG | + | tig0027598:33538-33557 | Msa1434950:intron | 25.0% |
!!! | AATTTTCAATTTTTCAGCAG+AGG | - | tig0027598:33634-33653 | None:intergenic | 25.0% |
! | GTTCGATATTAAATTTAGAC+GGG | + | tig0027598:33759-33778 | Msa1434950:intron | 25.0% |
! | AACATACAAATCTTCTATTG+AGG | - | tig0027598:34026-34045 | None:intergenic | 25.0% |
! | AACAATGTTTGTACATCAAA+TGG | - | tig0027598:34052-34071 | None:intergenic | 25.0% |
!! | ATTTTACAGACTATGAAAAC+TGG | - | tig0027598:34167-34186 | None:intergenic | 25.0% |
! | TTTAATCTTTACCAGTTAAC+TGG | + | tig0027598:34648-34667 | Msa1434950:intron | 25.0% |
! | TTGCTACATAAACAATATGT+TGG | - | tig0027598:34820-34839 | None:intergenic | 25.0% |
! | TATCTCAGACAAATTAAGAT+GGG | + | tig0027598:34884-34903 | Msa1434950:intron | 25.0% |
! | ATTGGGTATTATTATGAAGA+TGG | + | tig0027598:34908-34927 | Msa1434950:intron | 25.0% |
! | TTGGGTATTATTATGAAGAT+GGG | + | tig0027598:34909-34928 | Msa1434950:intron | 25.0% |
! | TTATTGTTACTCATGTCTAT+GGG | - | tig0027598:35017-35036 | None:intergenic | 25.0% |
!! | AAAGAATATTGTTGGTAGAT+TGG | + | tig0027598:35138-35157 | Msa1434950:intron | 25.0% |
! | AATATCATTCACATCGAAAT+AGG | + | tig0027598:35275-35294 | Msa1434950:intron | 25.0% |
! | TGATTAAAAATAGACTGACA+TGG | + | tig0027598:35310-35329 | Msa1434950:intron | 25.0% |
! | CTTATGAGAAATGAAATACT+AGG | - | tig0027598:35388-35407 | None:intergenic | 25.0% |
! | AAAATTACAACTTCCAACAT+AGG | - | tig0027598:35430-35449 | None:intergenic | 25.0% |
!! | AGTTCATCATTAGTTTAACA+TGG | + | tig0027598:35462-35481 | Msa1434950:intron | 25.0% |
!! | GTTCATCATTAGTTTAACAT+GGG | + | tig0027598:35463-35482 | Msa1434950:intron | 25.0% |
!! | TTCATCATTAGTTTAACATG+GGG | + | tig0027598:35464-35483 | Msa1434950:intron | 25.0% |
! | ATATAGCATAAATTGAAGCA+AGG | - | tig0027598:35658-35677 | None:intergenic | 25.0% |
! | TATGTTGGGGTTTATTTAAT+TGG | - | tig0027598:36012-36031 | None:intergenic | 25.0% |
! | TTCGTACAGAAAAAAGAAAA+TGG | - | tig0027598:36181-36200 | None:intergenic | 25.0% |
! | CCATAAATTAAACCTAAATC+AGG | - | tig0027598:36245-36264 | None:intergenic | 25.0% |
!! | CCTGATTTAGGTTTAATTTA+TGG | + | tig0027598:36242-36261 | Msa1434950:three_prime_UTR | 25.0% |
! | TGATACAAGAAATATTACGA+TGG | - | tig0027598:36323-36342 | None:intergenic | 25.0% |
! | TCTTGTATCATAATTGGAAA+TGG | + | tig0027598:36333-36352 | Msa1434950:three_prime_UTR | 25.0% |
TTTGCTCAAGATATCATCTT+TGG | - | tig0027598:31599-31618 | None:intergenic | 30.0% | |
CTTCTGAGTTAATAGATCAT+CGG | - | tig0027598:31659-31678 | None:intergenic | 30.0% | |
ACTGTTAGGTTATATATGCA+TGG | + | tig0027598:31967-31986 | Msa1434950:CDS | 30.0% | |
TCGGATATACTAACTCAAAA+GGG | - | tig0027598:32347-32366 | None:intergenic | 30.0% | |
ATCGGATATACTAACTCAAA+AGG | - | tig0027598:32348-32367 | None:intergenic | 30.0% | |
ATACATGTTTAGGCTATGTT+TGG | + | tig0027598:32427-32446 | Msa1434950:intron | 30.0% | |
! | GTTTGGTAAAAAATAGTGGA+TGG | + | tig0027598:32444-32463 | Msa1434950:intron | 30.0% |
!! | GCTCATAGTTGATAAATTAG+TGG | + | tig0027598:32539-32558 | Msa1434950:intron | 30.0% |
!! | TGATAAATTAGTGGGTTGAA+TGG | + | tig0027598:32548-32567 | Msa1434950:intron | 30.0% |
!! | GATAAATTAGTGGGTTGAAT+GGG | + | tig0027598:32549-32568 | Msa1434950:intron | 30.0% |
!! | ATAAATTAGTGGGTTGAATG+GGG | + | tig0027598:32550-32569 | Msa1434950:intron | 30.0% |
!! | ACAAATTTCTGAGGTTATAG+AGG | - | tig0027598:32716-32735 | None:intergenic | 30.0% |
ATCATTGTATATTGCATCTC+TGG | + | tig0027598:32856-32875 | Msa1434950:intron | 30.0% | |
! | GAAAAATATAAGTGATGGTG+TGG | + | tig0027598:33002-33021 | Msa1434950:intron | 30.0% |
! | TTTTCAACAAGATGCTCTTT+AGG | - | tig0027598:33095-33114 | None:intergenic | 30.0% |
!! | TAAAGAGCATCTTGTTGAAA+AGG | + | tig0027598:33094-33113 | Msa1434950:CDS | 30.0% |
ACTTGATGAATTTCATCATG+AGG | - | tig0027598:33392-33411 | None:intergenic | 30.0% | |
AATCAACAAATAGCAAGAGA+TGG | - | tig0027598:33421-33440 | None:intergenic | 30.0% | |
!! | TTGCTATTTGTTGATTGCTT+TGG | + | tig0027598:33425-33444 | Msa1434950:CDS | 30.0% |
!! | GATATTTTGAATTAACCTCG+TGG | + | tig0027598:33480-33499 | Msa1434950:intron | 30.0% |
CAACATAGAGTGGAAATATT+AGG | - | tig0027598:33582-33601 | None:intergenic | 30.0% | |
ATTGAAAATTGAGCTGACAA+AGG | + | tig0027598:33644-33663 | Msa1434950:CDS | 30.0% | |
TGATGATAGATGCTTAATCT+TGG | - | tig0027598:33919-33938 | None:intergenic | 30.0% | |
! | TAGTCTGTAAAATTTTCGTC+TGG | + | tig0027598:34174-34193 | Msa1434950:intron | 30.0% |
TATTTGAATGTGCTTCTGTT+AGG | + | tig0027598:34203-34222 | Msa1434950:intron | 30.0% | |
! | TCATAACCAGTGTTGTTAAA+TGG | + | tig0027598:34306-34325 | Msa1434950:intron | 30.0% |
!!! | GATTTTTTGACAACCACTAT+AGG | + | tig0027598:34342-34361 | Msa1434950:intron | 30.0% |
!!! | GTGTTTATATGACGGATTTT+TGG | + | tig0027598:34391-34410 | Msa1434950:intron | 30.0% |
! | TCTTTTTATAAAAGCTTCCG+AGG | + | tig0027598:34560-34579 | Msa1434950:intron | 30.0% |
TTTATCTCTCTGAACTTACA+GGG | - | tig0027598:34674-34693 | None:intergenic | 30.0% | |
! | TTTTATCTCTCTGAACTTAC+AGG | - | tig0027598:34675-34694 | None:intergenic | 30.0% |
GTATCTCAGACAAATTAAGA+TGG | + | tig0027598:34883-34902 | Msa1434950:intron | 30.0% | |
AGACAAATTAAGATGGGTAT+TGG | + | tig0027598:34890-34909 | Msa1434950:intron | 30.0% | |
GACAAATTAAGATGGGTATT+GGG | + | tig0027598:34891-34910 | Msa1434950:intron | 30.0% | |
! | AGCTATGATTTTTATGACTC+TGG | - | tig0027598:34956-34975 | None:intergenic | 30.0% |
GTTATTGTTACTCATGTCTA+TGG | - | tig0027598:35018-35037 | None:intergenic | 30.0% | |
TTCCAACATAGGAACTAAAA+TGG | - | tig0027598:35419-35438 | None:intergenic | 30.0% | |
GAATTTAATCAGGGATCAAA+TGG | - | tig0027598:35511-35530 | None:intergenic | 30.0% | |
TGTGAACAAAATCTTAACCT+CGG | + | tig0027598:35559-35578 | Msa1434950:intron | 30.0% | |
AATTCTTTCTGTGATGCTTT+AGG | + | tig0027598:35815-35834 | Msa1434950:intron | 30.0% | |
CTTAGAGAGAACAAAACAAT+AGG | - | tig0027598:35925-35944 | None:intergenic | 30.0% | |
!! | TGTTTTGTTCTCTCTAAGTT+AGG | + | tig0027598:35927-35946 | Msa1434950:CDS | 30.0% |
CAGAATATACTTATAAAGCC+CGG | + | tig0027598:35964-35983 | Msa1434950:CDS | 30.0% | |
ACACTTGTAGAAGCAAAATA+TGG | - | tig0027598:36123-36142 | None:intergenic | 30.0% | |
GAAATGGATAAATGAAGCTT+AGG | + | tig0027598:36349-36368 | Msa1434950:three_prime_UTR | 30.0% | |
!! | TCTGACTTGTTGTAAGGATT+CGG | - | tig0027598:31506-31525 | None:intergenic | 35.0% |
GTTAATAGATCATCGGAATC+AGG | - | tig0027598:31652-31671 | None:intergenic | 35.0% | |
TACATATCCTGAAACGAGAT+TGG | - | tig0027598:31685-31704 | None:intergenic | 35.0% | |
AAATTGAGACCTCAAGTGAA+AGG | + | tig0027598:32012-32031 | Msa1434950:CDS | 35.0% | |
! | CAATCTTTTCCTTTCACTTG+AGG | - | tig0027598:32024-32043 | None:intergenic | 35.0% |
CTCAAGTGAAAGGAAAAGAT+TGG | + | tig0027598:32022-32041 | Msa1434950:CDS | 35.0% | |
! | CATTTCATCTTCCTCTAAAG+AGG | + | tig0027598:32318-32337 | Msa1434950:intron | 35.0% |
TGATAAAGTTCATTCGCTGT+CGG | - | tig0027598:32482-32501 | None:intergenic | 35.0% | |
TCTAGTAGTGTTTGAGCTTA+TGG | - | tig0027598:32590-32609 | None:intergenic | 35.0% | |
TTTGGCAAGACAAATTTCTG+AGG | - | tig0027598:32725-32744 | None:intergenic | 35.0% | |
CTTTATACTAAGGCTCTGTT+TGG | - | tig0027598:32743-32762 | None:intergenic | 35.0% | |
ATAGGTCCACTATTGTTTAG+TGG | + | tig0027598:32781-32800 | Msa1434950:intron | 35.0% | |
CCAATTCCACTAAACAATAG+TGG | - | tig0027598:32790-32809 | None:intergenic | 35.0% | |
CCACTATTGTTTAGTGGAAT+TGG | + | tig0027598:32787-32806 | Msa1434950:intron | 35.0% | |
ATATTCAGTGATGTCAATCG+CGG | - | tig0027598:32836-32855 | None:intergenic | 35.0% | |
TTTATAAAGCTCTTGCCAAG+TGG | + | tig0027598:32934-32953 | Msa1434950:intron | 35.0% | |
ATTGATATGTTGTCCCTGAT+TGG | + | tig0027598:33041-33060 | Msa1434950:CDS | 35.0% | |
CAATTGTAGCTATCAGATGA+AGG | - | tig0027598:33198-33217 | None:intergenic | 35.0% | |
TTTCCGTAATTGAGAGTTGT+AGG | + | tig0027598:33451-33470 | Msa1434950:intron | 35.0% | |
! | TATTTTGCTTCACATGTCGA+TGG | + | tig0027598:33512-33531 | Msa1434950:intron | 35.0% |
ATCATCAGTTCTACACAAGA+AGG | + | tig0027598:33932-33951 | Msa1434950:CDS | 35.0% | |
!!! | TTTTTTAACACCCTACCGTA+TGG | + | tig0027598:34276-34295 | Msa1434950:intron | 35.0% |
!! | GTTAAATGGCATTGGTTTAG+CGG | + | tig0027598:34320-34339 | Msa1434950:intron | 35.0% |
! | CACTATAGGCATTTTGTGAA+GGG | + | tig0027598:34356-34375 | Msa1434950:intron | 35.0% |
! | ACTATAGGCATTTTGTGAAG+GGG | + | tig0027598:34357-34376 | Msa1434950:intron | 35.0% |
AAATATTCTGCAAAGGAGAC+TGG | + | tig0027598:34457-34476 | Msa1434950:intron | 35.0% | |
AATATTCTGCAAAGGAGACT+GGG | + | tig0027598:34458-34477 | Msa1434950:intron | 35.0% | |
GATTGAGATTGAGATTGAGA+TGG | - | tig0027598:34765-34784 | None:intergenic | 35.0% | |
ATCTCAATCTCAATCTCACT+TGG | + | tig0027598:34770-34789 | Msa1434950:intron | 35.0% | |
ATTGTTTATGTAGCAAGCTC+TGG | + | tig0027598:34824-34843 | Msa1434950:intron | 35.0% | |
ACTGACATGGCTTAATAGAT+GGG | + | tig0027598:35323-35342 | Msa1434950:intron | 35.0% | |
ATAGATGGGAATGTGTTTAC+AGG | + | tig0027598:35337-35356 | Msa1434950:intron | 35.0% | |
ACATAGGAACTAAAATGGAG+TGG | - | tig0027598:35414-35433 | None:intergenic | 35.0% | |
!!! | CTCCATTTTAGTTCCTATGT+TGG | + | tig0027598:35414-35433 | Msa1434950:intron | 35.0% |
! | ATCATTAGTTTAACATGGGG+TGG | + | tig0027598:35467-35486 | Msa1434950:intron | 35.0% |
CAAAATTATATTGAAGGCCG+AGG | - | tig0027598:35579-35598 | None:intergenic | 35.0% | |
TATTCATTGCACACTAGGAT+GGG | - | tig0027598:35682-35701 | None:intergenic | 35.0% | |
ATTCATGTGACTAGTGATGA+GGG | - | tig0027598:35706-35725 | None:intergenic | 35.0% | |
AATTCATGTGACTAGTGATG+AGG | - | tig0027598:35707-35726 | None:intergenic | 35.0% | |
TCTTTGACTGGGAGTAATTA+AGG | - | tig0027598:35739-35758 | None:intergenic | 35.0% | |
TTAATTACTCCCAGTCAAAG+AGG | + | tig0027598:35738-35757 | Msa1434950:intron | 35.0% | |
AATAGTAATACTAGCCAGAC+CGG | - | tig0027598:35782-35801 | None:intergenic | 35.0% | |
TGATAGCAATGGTTCAAAAG+AGG | + | tig0027598:35859-35878 | Msa1434950:CDS | 35.0% | |
AAAACAATAGGAATCCCAGT+CGG | - | tig0027598:35913-35932 | None:intergenic | 35.0% | |
! | CGGGCTTTATAAGTATATTC+TGG | - | tig0027598:35966-35985 | None:intergenic | 35.0% |
TAGACTGGATAAAATCAGCT+GGG | - | tig0027598:36058-36077 | None:intergenic | 35.0% | |
TTAGACTGGATAAAATCAGC+TGG | - | tig0027598:36059-36078 | None:intergenic | 35.0% | |
! | AGTGTTGTTCCATATATCCA+TGG | + | tig0027598:36138-36157 | Msa1434950:three_prime_UTR | 35.0% |
ATTCTTCAGCCATGGATATA+TGG | - | tig0027598:36150-36169 | None:intergenic | 35.0% | |
TTACGATGGAAAAGACAACA+AGG | - | tig0027598:36309-36328 | None:intergenic | 35.0% | |
!!! | GAGGGGTTTTTCTGAGATTA+GGG | - | tig0027598:31336-31355 | None:intergenic | 40.0% |
!!! | AGAGGGGTTTTTCTGAGATT+AGG | - | tig0027598:31337-31356 | None:intergenic | 40.0% |
!!! | TGGGTTTTGTGGTTTTGAGA+CGG | - | tig0027598:31399-31418 | None:intergenic | 40.0% |
TTGTTGTAAGGATTCGGAGA+AGG | - | tig0027598:31500-31519 | None:intergenic | 40.0% | |
!! | TGAGCTTCTGACTTGTTGTA+AGG | - | tig0027598:31512-31531 | None:intergenic | 40.0% |
!! | TTGGATTCGTTTTGTTGCGA+GGG | - | tig0027598:31580-31599 | None:intergenic | 40.0% |
!! | TTTGGATTCGTTTTGTTGCG+AGG | - | tig0027598:31581-31600 | None:intergenic | 40.0% |
GATACGTCGAAAACTACCAT+CGG | + | tig0027598:31742-31761 | Msa1434950:CDS | 40.0% | |
ATTGGACTTGATGTGATTCG+TGG | + | tig0027598:31778-31797 | Msa1434950:CDS | 40.0% | |
TTGTTACCGGATTCGATGTT+TGG | + | tig0027598:31892-31911 | Msa1434950:CDS | 40.0% | |
TGTTACCGGATTCGATGTTT+GGG | + | tig0027598:31893-31912 | Msa1434950:CDS | 40.0% | |
GATGTTTGGGAAGGAGATAA+GGG | + | tig0027598:31906-31925 | Msa1434950:CDS | 40.0% | |
TTAGCCAAGGTGAATGATTC+AGG | + | tig0027598:31934-31953 | Msa1434950:CDS | 40.0% | |
TAGCCAAGGTGAATGATTCA+GGG | + | tig0027598:31935-31954 | Msa1434950:CDS | 40.0% | |
! | GTGAATGATTCAGGGAGTTT+TGG | + | tig0027598:31943-31962 | Msa1434950:CDS | 40.0% |
TGAGAGGTTGAAGAAAGTGA+GGG | + | tig0027598:32065-32084 | Msa1434950:CDS | 40.0% | |
GTTGAAGAAAGTGAGGGAAA+TGG | + | tig0027598:32071-32090 | Msa1434950:CDS | 40.0% | |
GATGATAGACTAGAGAAGCT+TGG | + | tig0027598:32295-32314 | Msa1434950:intron | 40.0% | |
CAAAAGGGTTTCCTCTTTAG+AGG | - | tig0027598:32332-32351 | None:intergenic | 40.0% | |
GATAAAGTTCATTCGCTGTC+GGG | - | tig0027598:32481-32500 | None:intergenic | 40.0% | |
CTAGATAAGGTAGCTGATAG+CGG | + | tig0027598:32508-32527 | Msa1434950:intron | 40.0% | |
TGTTGTCAATTAGGGGCTAT+AGG | + | tig0027598:32763-32782 | Msa1434950:intron | 40.0% | |
ATATTGCATCTCTGGTCATG+TGG | + | tig0027598:32864-32883 | Msa1434950:intron | 40.0% | |
TCAACAAGATGCTCTTTAGG+AGG | - | tig0027598:33092-33111 | None:intergenic | 40.0% | |
CTGTCCTTCTTGAATTGTTG+AGG | + | tig0027598:33166-33185 | Msa1434950:intron | 40.0% | |
AGCACCTCAACAATTCAAGA+AGG | - | tig0027598:33173-33192 | None:intergenic | 40.0% | |
AAAATAATCCAGACACCACG+AGG | - | tig0027598:33498-33517 | None:intergenic | 40.0% | |
GTACTGGAATCAACATAGAG+TGG | - | tig0027598:33592-33611 | None:intergenic | 40.0% | |
! | TGTTATCTGGGTGAAAGTAC+TGG | - | tig0027598:33608-33627 | None:intergenic | 40.0% |
TCATGATTGGATCGAGTGTT+TGG | + | tig0027598:33817-33836 | Msa1434950:intron | 40.0% | |
TGAATGTGCTTCTGTTAGGT+AGG | + | tig0027598:34207-34226 | Msa1434950:intron | 40.0% | |
! | CCAATGCCATTTAACAACAC+TGG | - | tig0027598:34315-34334 | None:intergenic | 40.0% |
! | CCAGTGTTGTTAAATGGCAT+TGG | + | tig0027598:34312-34331 | Msa1434950:intron | 40.0% |
CCTTCACAAAATGCCTATAG+TGG | - | tig0027598:34358-34377 | None:intergenic | 40.0% | |
! | CCACTATAGGCATTTTGTGA+AGG | + | tig0027598:34355-34374 | Msa1434950:intron | 40.0% |
! | CTATAGGCATTTTGTGAAGG+GGG | + | tig0027598:34358-34377 | Msa1434950:intron | 40.0% |
GTCATATAAACACACCACTG+CGG | - | tig0027598:34384-34403 | None:intergenic | 40.0% | |
GCAGTGGTGTGTTTATATGA+CGG | + | tig0027598:34383-34402 | Msa1434950:intron | 40.0% | |
CCAATGTTGTTAATGGCAGA+TGG | - | tig0027598:34417-34436 | None:intergenic | 40.0% | |
CCATCTGCCATTAACAACAT+TGG | + | tig0027598:34414-34433 | Msa1434950:intron | 40.0% | |
GGTGTGACCAATGTTGTTAA+TGG | - | tig0027598:34424-34443 | None:intergenic | 40.0% | |
CCAATCATGATCGTGCATTA+TGG | - | tig0027598:34485-34504 | None:intergenic | 40.0% | |
CCATAATGCACGATCATGAT+TGG | + | tig0027598:34482-34501 | Msa1434950:intron | 40.0% | |
TGTTGAAATTTAGCCGTTCC+AGG | + | tig0027598:34700-34719 | Msa1434950:intron | 40.0% | |
GTTGAAATTTAGCCGTTCCA+GGG | + | tig0027598:34701-34720 | Msa1434950:intron | 40.0% | |
GAGATTGAGATGGTAGACAA+CGG | - | tig0027598:34755-34774 | None:intergenic | 40.0% | |
TTGGTAGATTGGATGAAAGC+TGG | + | tig0027598:35149-35168 | Msa1434950:intron | 40.0% | |
TGGTAGATTGGATGAAAGCT+GGG | + | tig0027598:35150-35169 | Msa1434950:intron | 40.0% | |
GACTGACATGGCTTAATAGA+TGG | + | tig0027598:35322-35341 | Msa1434950:intron | 40.0% | |
CTATTCATTGCACACTAGGA+TGG | - | tig0027598:35683-35702 | None:intergenic | 40.0% | |
TGACTGGGAGTAATTAAGGA+CGG | - | tig0027598:35735-35754 | None:intergenic | 40.0% | |
GCAATCTTTCCTCTTTGACT+GGG | - | tig0027598:35750-35769 | None:intergenic | 40.0% | |
AGCAATCTTTCCTCTTTGAC+TGG | - | tig0027598:35751-35770 | None:intergenic | 40.0% | |
GAAAGATTGCTACATAGCTC+CGG | + | tig0027598:35760-35779 | Msa1434950:intron | 40.0% | |
!! | TGCTTTAGGATGTGCATTCT+CGG | + | tig0027598:35829-35848 | Msa1434950:intron | 40.0% |
TATACTTATAAAGCCCGGAC+TGG | + | tig0027598:35969-35988 | Msa1434950:CDS | 40.0% | |
ATTGACTAAGCTGCTTGAAC+TGG | - | tig0027598:36094-36113 | None:intergenic | 40.0% | |
AGTTCAAGCAGCTTAGTCAA+TGG | + | tig0027598:36093-36112 | Msa1434950:three_prime_UTR | 40.0% | |
TGGTGGAGAAAGAGAAAGAG+GGG | - | tig0027598:31353-31372 | None:intergenic | 45.0% | |
! | GTGGTGGAGAAAGAGAAAGA+GGG | - | tig0027598:31354-31373 | None:intergenic | 45.0% |
!! | AGAGTAGGGTTTGGGTTTTG+TGG | - | tig0027598:31410-31429 | None:intergenic | 45.0% |
TGTAAGGATTCGGAGAAGGA+GGG | - | tig0027598:31496-31515 | None:intergenic | 45.0% | |
TTGTAAGGATTCGGAGAAGG+AGG | - | tig0027598:31497-31516 | None:intergenic | 45.0% | |
!! | GAAGGTGTTGTGTTTGACGT+TGG | - | tig0027598:31547-31566 | None:intergenic | 45.0% |
!!! | TGGTTTTGGAACGGAAGCTT+TGG | - | tig0027598:31624-31643 | None:intergenic | 45.0% |
TAGATCATCGGAATCAGGTG+CGG | - | tig0027598:31647-31666 | None:intergenic | 45.0% | |
GAAGAAGCCAATCTCGTTTC+AGG | + | tig0027598:31675-31694 | Msa1434950:CDS | 45.0% | |
TCGATCCAAAGATTCCGCTT+CGG | + | tig0027598:31720-31739 | Msa1434950:CDS | 45.0% | |
! | AGTTTTCGACGTATCCGAAG+CGG | - | tig0027598:31737-31756 | None:intergenic | 45.0% |
AAATTCGACGAATCAGACGC+CGG | + | tig0027598:31819-31838 | Msa1434950:CDS | 45.0% | |
CTATTCCCCGCTGACATATT+CGG | - | tig0027598:31862-31881 | None:intergenic | 45.0% | |
AATATGTCAGCGGGGAATAG+TGG | + | tig0027598:31862-31881 | Msa1434950:CDS | 45.0% | |
ATATGTCAGCGGGGAATAGT+GGG | + | tig0027598:31863-31882 | Msa1434950:CDS | 45.0% | |
!! | TAGTGGGACGAGTTTGTTAC+CGG | + | tig0027598:31879-31898 | Msa1434950:CDS | 45.0% |
TCCTTCCCAAACATCGAATC+CGG | - | tig0027598:31901-31920 | None:intergenic | 45.0% | |
CGATGTTTGGGAAGGAGATA+AGG | + | tig0027598:31905-31924 | Msa1434950:CDS | 45.0% | |
TTGGGAAGGAGATAAGGGAT+AGG | + | tig0027598:31911-31930 | Msa1434950:CDS | 45.0% | |
! | GATAAGGGATAGGTTAGCCA+AGG | + | tig0027598:31921-31940 | Msa1434950:CDS | 45.0% |
ACTCCCTGAATCATTCACCT+TGG | - | tig0027598:31941-31960 | None:intergenic | 45.0% | |
!! | CAGGGAGTTTTGGTACTGTT+AGG | + | tig0027598:31953-31972 | Msa1434950:CDS | 45.0% |
CTTCAACCTCTCACTCAACT+CGG | - | tig0027598:32058-32077 | None:intergenic | 45.0% | |
GTGAGAGGTTGAAGAAAGTG+AGG | + | tig0027598:32064-32083 | Msa1434950:CDS | 45.0% | |
ATAAAGCTCTTGCCAAGTGG+AGG | + | tig0027598:32937-32956 | Msa1434950:intron | 45.0% | |
TAAAGCTCTTGCCAAGTGGA+GGG | + | tig0027598:32938-32957 | Msa1434950:intron | 45.0% | |
AGGGTTGTGGTCATGTTGTA+AGG | + | tig0027598:32957-32976 | Msa1434950:intron | 45.0% | |
GATATGTTGTCCCTGATTGG+TGG | + | tig0027598:33044-33063 | Msa1434950:CDS | 45.0% | |
AACGTCAAAGTCAAAGCCTG+TGG | + | tig0027598:33221-33240 | Msa1434950:intron | 45.0% | |
CGGCCTACAACTCTCAATTA+CGG | - | tig0027598:33457-33476 | None:intergenic | 45.0% | |
TGAATTAACCTCGTGGTGTC+TGG | + | tig0027598:33487-33506 | Msa1434950:intron | 45.0% | |
TGCTTCACATGTCGATGGAT+AGG | + | tig0027598:33517-33536 | Msa1434950:intron | 45.0% | |
CAGCAGAGGACATGTTATCT+GGG | - | tig0027598:33620-33639 | None:intergenic | 45.0% | |
TCAGCAGAGGACATGTTATC+TGG | - | tig0027598:33621-33640 | None:intergenic | 45.0% | |
AAGATGTCCGAGTCAGATTG+TGG | + | tig0027598:33681-33700 | Msa1434950:CDS | 45.0% | |
TCTGCTCGTGTTCAAGGTAA+AGG | + | tig0027598:33705-33724 | Msa1434950:intron | 45.0% | |
GGTTATGATGACTCGCCATA+CGG | - | tig0027598:34294-34313 | None:intergenic | 45.0% | |
AAAAGCTTCCGAGGAATGCT+AGG | + | tig0027598:34569-34588 | Msa1434950:intron | 45.0% | |
AAAGCTTCCGAGGAATGCTA+GGG | + | tig0027598:34570-34589 | Msa1434950:intron | 45.0% | |
TGTATGACCCTAGCATTCCT+CGG | - | tig0027598:34580-34599 | None:intergenic | 45.0% | |
AACTTACAGGGCCAGTTAAC+TGG | - | tig0027598:34662-34681 | None:intergenic | 45.0% | |
AGATGGTAGACAACGGAAAG+CGG | - | tig0027598:34748-34767 | None:intergenic | 45.0% | |
! | GTTTATGTAGCAAGCTCTGG+TGG | + | tig0027598:34827-34846 | Msa1434950:intron | 45.0% |
GGTAGATTGGATGAAAGCTG+GGG | + | tig0027598:35151-35170 | Msa1434950:intron | 45.0% | |
! | TTGCAAGAGCAGGACAGTTT+TGG | + | tig0027598:35214-35233 | Msa1434950:intron | 45.0% |
CTGGAGATGGTGAGTATAGA+AGG | + | tig0027598:35243-35262 | Msa1434950:intron | 45.0% | |
AGGGCTATTCATTGCACACT+AGG | - | tig0027598:35687-35706 | None:intergenic | 45.0% | |
TAGGATGTGCATTCTCGGAA+AGG | + | tig0027598:35834-35853 | Msa1434950:intron | 45.0% | |
TCGGAAAGGTCTGATAGCAA+TGG | + | tig0027598:35848-35867 | Msa1434950:CDS | 45.0% | |
AATACCTCAGAAGAACCGAC+TGG | + | tig0027598:35895-35914 | Msa1434950:CDS | 45.0% | |
ATACCTCAGAAGAACCGACT+GGG | + | tig0027598:35896-35915 | Msa1434950:CDS | 45.0% | |
!! | TAAAGCCCGGACTGGTAAAT+CGG | + | tig0027598:35977-35996 | Msa1434950:CDS | 45.0% |
AGCAACACATTCTTCAGCCA+TGG | - | tig0027598:36158-36177 | None:intergenic | 45.0% | |
!! | GGTGGTGGAGAAAGAGAAAG+AGG | - | tig0027598:31355-31374 | None:intergenic | 50.0% |
TTCTCCACCACCACCAACAA+TGG | + | tig0027598:31363-31382 | Msa1434950:exon | 50.0% | |
!! | AGAAGAAGCGCCATTGTTGG+TGG | - | tig0027598:31376-31395 | None:intergenic | 50.0% |
! | AGTGGTGGAGAGTAGGGTTT+GGG | - | tig0027598:31418-31437 | None:intergenic | 50.0% |
! | TGATGGAGTGGTGGAGAGTA+GGG | - | tig0027598:31424-31443 | None:intergenic | 50.0% |
TCCAACTCCGGTGACAATGA+CGG | + | tig0027598:31457-31476 | Msa1434950:CDS | 50.0% | |
! | TTTTGTTGCGAGGGAGAGAG+AGG | - | tig0027598:31571-31590 | None:intergenic | 50.0% |
CGTATCCGAAGCGGAATCTT+TGG | - | tig0027598:31728-31747 | None:intergenic | 50.0% | |
ACGTCGAAAACTACCATCGG+TGG | + | tig0027598:31745-31764 | Msa1434950:CDS | 50.0% | |
TCGAAAACTACCATCGGTGG+TGG | + | tig0027598:31748-31767 | Msa1434950:CDS | 50.0% | |
! | AAAACTACCATCGGTGGTGG+TGG | + | tig0027598:31751-31770 | Msa1434950:CDS | 50.0% |
! | AAACTACCATCGGTGGTGGT+GGG | + | tig0027598:31752-31771 | Msa1434950:CDS | 50.0% |
GACATATTCGGTCTCCACCT+CGG | - | tig0027598:31850-31869 | None:intergenic | 50.0% | |
GTGGAGACCGAATATGTCAG+CGG | + | tig0027598:31852-31871 | Msa1434950:CDS | 50.0% | |
TGGAGACCGAATATGTCAGC+GGG | + | tig0027598:31853-31872 | Msa1434950:CDS | 50.0% | |
ACCGGATTCGATGTTTGGGA+AGG | + | tig0027598:31897-31916 | Msa1434950:CDS | 50.0% | |
GCGTCGCTATTCGACAACAT+CGG | - | tig0027598:32366-32385 | None:intergenic | 50.0% | |
GCTTGGAGTTCCACCAATCA+GGG | - | tig0027598:33057-33076 | None:intergenic | 50.0% | |
AGCTTGGAGTTCCACCAATC+AGG | - | tig0027598:33058-33077 | None:intergenic | 50.0% | |
! | GGAGGCTTTGACAAGTAGCT+TGG | - | tig0027598:33074-33093 | None:intergenic | 50.0% |
AGCAGAGCCACAATCTGACT+CGG | - | tig0027598:33691-33710 | None:intergenic | 50.0% | |
TGATGACTCGCCATACGGTA+GGG | - | tig0027598:34289-34308 | None:intergenic | 50.0% | |
ATGATGACTCGCCATACGGT+AGG | - | tig0027598:34290-34309 | None:intergenic | 50.0% | |
GATGGTAGACAACGGAAAGC+GGG | - | tig0027598:34747-34766 | None:intergenic | 50.0% | |
CCTGCTCTTGCAAGTTCTCT+TGG | - | tig0027598:35207-35226 | None:intergenic | 50.0% | |
CCAAGAGAACTTGCAAGAGC+AGG | + | tig0027598:35204-35223 | Msa1434950:intron | 50.0% | |
!! | CAAGAGCAGGACAGTTTTGG+TGG | + | tig0027598:35217-35236 | Msa1434950:intron | 50.0% |
!! | AGGACAGTTTTGGTGGAGAC+TGG | + | tig0027598:35224-35243 | Msa1434950:intron | 50.0% |
!! | GTTTTGGTGGAGACTGGAGA+TGG | + | tig0027598:35230-35249 | Msa1434950:intron | 50.0% |
GGGGTGGACAATGTAATCTG+CGG | + | tig0027598:35483-35502 | Msa1434950:intron | 50.0% | |
ATTGCTACATAGCTCCGGTC+TGG | + | tig0027598:35765-35784 | Msa1434950:intron | 50.0% | |
! | AATCCCAGTCGGTTCTTCTG+AGG | - | tig0027598:35902-35921 | None:intergenic | 50.0% |
!! | AAAGCCCGGACTGGTAAATC+GGG | + | tig0027598:35978-35997 | Msa1434950:CDS | 50.0% |
! | GGCTAGTCAGACACTTAGAC+TGG | - | tig0027598:36073-36092 | None:intergenic | 50.0% |
!! | AGAAGCGCCATTGTTGGTGG+TGG | - | tig0027598:31373-31392 | None:intergenic | 55.0% |
!! | CGGAGAAGAAGCGCCATTGT+TGG | - | tig0027598:31379-31398 | None:intergenic | 55.0% |
! | GAGTGGTGGAGAGTAGGGTT+TGG | - | tig0027598:31419-31438 | None:intergenic | 55.0% |
! | GTGATGGAGTGGTGGAGAGT+AGG | - | tig0027598:31425-31444 | None:intergenic | 55.0% |
!! | GAGAAGAGGTGATGGAGTGG+TGG | - | tig0027598:31433-31452 | None:intergenic | 55.0% |
!! | GTGGAGAAGAGGTGATGGAG+TGG | - | tig0027598:31436-31455 | None:intergenic | 55.0% |
TGGAGGTGGAGAAGAGGTGA+TGG | - | tig0027598:31441-31460 | None:intergenic | 55.0% | |
CTCTTCTCCACCTCCAACTC+CGG | + | tig0027598:31445-31464 | Msa1434950:CDS | 55.0% | |
ATTGTCACCGGAGTTGGAGG+TGG | - | tig0027598:31455-31474 | None:intergenic | 55.0% | |
GTCATTGTCACCGGAGTTGG+AGG | - | tig0027598:31458-31477 | None:intergenic | 55.0% | |
ACCGTCATTGTCACCGGAGT+TGG | - | tig0027598:31461-31480 | None:intergenic | 55.0% | |
AACTCCGGTGACAATGACGG+TGG | + | tig0027598:31460-31479 | Msa1434950:CDS | 55.0% | |
!!! | CAGGTGCGGTGGTTTTGGAA+CGG | - | tig0027598:31633-31652 | None:intergenic | 55.0% |
! | GGAATCAGGTGCGGTGGTTT+TGG | - | tig0027598:31638-31657 | None:intergenic | 55.0% |
ATCATCGGAATCAGGTGCGG+TGG | - | tig0027598:31644-31663 | None:intergenic | 55.0% | |
! | AACTACCATCGGTGGTGGTG+GGG | + | tig0027598:31753-31772 | Msa1434950:CDS | 55.0% |
GGAGACCGAATATGTCAGCG+GGG | + | tig0027598:31854-31873 | Msa1434950:CDS | 55.0% | |
! | CGATTGCCGAGTTGAGTGAG+AGG | + | tig0027598:32049-32068 | Msa1434950:CDS | 55.0% |
GTGATGTCAATCGCGGATCG+CGG | - | tig0027598:32829-32848 | None:intergenic | 55.0% | |
TCTTGCCAAGTGGAGGGTTG+TGG | + | tig0027598:32944-32963 | Msa1434950:intron | 55.0% | |
CATGACCACAACCCTCCACT+TGG | - | tig0027598:32952-32971 | None:intergenic | 55.0% | |
! | TGTGGCTCTGCTCGTGTTCA+AGG | + | tig0027598:33699-33718 | Msa1434950:CDS | 55.0% |
GTGGAGATGAGACCCTGGAA+CGG | - | tig0027598:34716-34735 | None:intergenic | 55.0% | |
GTCACCCGATTTACCAGTCC+GGG | - | tig0027598:35985-36004 | None:intergenic | 55.0% | |
CGTCACCCGATTTACCAGTC+CGG | - | tig0027598:35986-36005 | None:intergenic | 55.0% | |
!! | AGCGCCATTGTTGGTGGTGG+TGG | - | tig0027598:31370-31389 | None:intergenic | 60.0% |
CGGAGTTGGAGGTGGAGAAG+AGG | - | tig0027598:31447-31466 | None:intergenic | 60.0% | |
GTCGCCACCGTCATTGTCAC+CGG | - | tig0027598:31467-31486 | None:intergenic | 60.0% | |
TGCGAGGGAGAGAGAGGAGA+AGG | - | tig0027598:31565-31584 | None:intergenic | 60.0% | |
!! | ACTACCATCGGTGGTGGTGG+GGG | + | tig0027598:31754-31773 | Msa1434950:CDS | 60.0% |
AATACCCCCACCACCACCGA+TGG | - | tig0027598:31761-31780 | None:intergenic | 60.0% | |
!! | ATCGGTGGTGGTGGGGGTAT+TGG | + | tig0027598:31760-31779 | Msa1434950:CDS | 60.0% |
! | TTTTGTGAAGGGGGCCGCAG+TGG | + | tig0027598:34367-34386 | Msa1434950:intron | 60.0% |
GTGTCGTGGAGATGAGACCC+TGG | - | tig0027598:34721-34740 | None:intergenic | 60.0% | |
ATCAGACGCCGGTGACGCCG+AGG | + | tig0027598:31830-31849 | Msa1434950:CDS | 70.0% | |
GGTCTCCACCTCGGCGTCAC+CGG | - | tig0027598:31841-31860 | None:intergenic | 70.0% | |
! | CGGAAAGCGGGCTCGTGTCG+TGG | - | tig0027598:34735-34754 | None:intergenic | 70.0% |
AGACGCCGGTGACGCCGAGG+TGG | + | tig0027598:31833-31852 | Msa1434950:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0027598 | gene | 31310 | 36385 | 31310 | ID=Msa1434950;Name=Msa1434950 |
tig0027598 | mRNA | 31310 | 36385 | 31310 | ID=Msa1434950-mRNA-1;Parent=Msa1434950;Name=Msa1434950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=72|0.6|0.66|0.83|1|1|6|369|444 |
tig0027598 | exon | 31310 | 32213 | 31310 | ID=Msa1434950-mRNA-1:exon:9400;Parent=Msa1434950-mRNA-1 |
tig0027598 | exon | 33033 | 33123 | 33033 | ID=Msa1434950-mRNA-1:exon:9401;Parent=Msa1434950-mRNA-1 |
tig0027598 | exon | 33389 | 33455 | 33389 | ID=Msa1434950-mRNA-1:exon:9402;Parent=Msa1434950-mRNA-1 |
tig0027598 | exon | 33609 | 33720 | 33609 | ID=Msa1434950-mRNA-1:exon:9403;Parent=Msa1434950-mRNA-1 |
tig0027598 | exon | 33901 | 33953 | 33901 | ID=Msa1434950-mRNA-1:exon:9404;Parent=Msa1434950-mRNA-1 |
tig0027598 | exon | 35837 | 36385 | 35837 | ID=Msa1434950-mRNA-1:exon:9405;Parent=Msa1434950-mRNA-1 |
tig0027598 | five_prime_UTR | 31310 | 31381 | 31310 | ID=Msa1434950-mRNA-1:five_prime_utr;Parent=Msa1434950-mRNA-1 |
tig0027598 | CDS | 31382 | 32213 | 31382 | ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1 |
tig0027598 | CDS | 33033 | 33123 | 33033 | ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1 |
tig0027598 | CDS | 33389 | 33455 | 33389 | ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1 |
tig0027598 | CDS | 33609 | 33720 | 33609 | ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1 |
tig0027598 | CDS | 33901 | 33953 | 33901 | ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1 |
tig0027598 | CDS | 35837 | 36016 | 35837 | ID=Msa1434950-mRNA-1:cds;Parent=Msa1434950-mRNA-1 |
tig0027598 | three_prime_UTR | 36017 | 36385 | 36017 | ID=Msa1434950-mRNA-1:three_prime_utr;Parent=Msa1434950-mRNA-1 |
Gene Sequence |
Protein sequence |