AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1443300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443300 MtrunA17_Chr2g0277001 98.718 936 11 1 1 936 1 935 0.0 1919
Msa1443300 MtrunA17_Chr1g0155771 98.184 936 16 1 1 936 1 935 0.0 1905
Msa1443300 MtrunA17_Chr7g0275381 92.545 939 64 6 1 936 1 936 0.0 1637
Msa1443300 MtrunA17_Chr6g0468211 57.759 580 132 10 259 834 62 532 0.0 570
Msa1443300 MtrunA17_Chr2g0316781 51.852 405 49 7 164 567 12 271 1.77e-113 349
Msa1443300 MtrunA17_Chr2g0303811 82.581 155 27 0 565 719 1 155 2.18e-86 273
Msa1443300 MtrunA17_Chr6g0468421 57.752 258 41 3 322 579 1 190 1.47e-83 267
Msa1443300 MtrunA17_Chr6g0468011 60.606 198 47 4 259 454 12 180 6.82e-65 216
Msa1443300 MtrunA17_Chr6g0468411 75.556 135 29 1 556 686 5 139 3.57e-63 211
Msa1443300 MtrunA17_Chr2g0303821 62.385 109 40 1 727 834 1 109 8.73e-38 138
Msa1443300 MtrunA17_Chr6g0467931 67.000 100 31 2 726 823 1 100 5.61e-32 120
Msa1443300 MtrunA17_Chr6g0467941 47.917 144 23 2 543 686 1 92 4.00e-31 118
Msa1443300 MtrunA17_Chr6g0468001 58.559 111 24 3 726 834 1 91 5.80e-29 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443300 AT3G56150.2 66.843 944 261 15 1 936 1 900 0.0 1147
Msa1443300 AT3G56150.1 66.843 944 261 15 1 936 1 900 0.0 1147
Msa1443300 AT3G22860.1 64.123 616 202 6 243 848 181 787 0.0 796

Find 268 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAGTTCAAAGAGATTC+TGG 0.204715 tig0030416:+24073 Msa1443300:CDS
GGCTAATCTGTTGTTGATTT+AGG 0.213717 tig0030416:+22977 Msa1443300:five_prime_UTR
GCTGGGACTCATCTTCTTCT+TGG 0.219134 tig0030416:-23709 None:intergenic
TGTAAAGATTAGGGATCTTT+TGG 0.232109 tig0030416:-23629 None:intergenic
ACATGATCCCTGACAGTTTC+AGG 0.235192 tig0030416:-26288 None:intergenic
TGTTTGTCTGAACTTTATTC+TGG 0.235265 tig0030416:+25046 Msa1443300:CDS
CAATAATGTCAAAGGCCTTC+TGG 0.238181 tig0030416:-26347 None:intergenic
GGTTTCCGCGCCACAAGTTC+CGG 0.248793 tig0030416:-24746 None:intergenic
GCCACAAGGGTTCTTATTAA+TGG 0.250263 tig0030416:+26318 Msa1443300:CDS
AAGCTGTAATACTGAATAAA+TGG 0.260781 tig0030416:-27069 None:intergenic
TGCTCAGGCTTCTGCTAATA+AGG 0.263529 tig0030416:+23683 Msa1443300:CDS
GGAAAATAGCAGGACCTTAA+TGG 0.268698 tig0030416:+24778 Msa1443300:CDS
GCTAATCTGTTGTTGATTTA+GGG 0.278783 tig0030416:+22978 Msa1443300:five_prime_UTR
GTTGAAGGCTTTGGCATTGC+TGG 0.280294 tig0030416:-23727 None:intergenic
GAATCATCAACCTTTATGTT+TGG 0.286060 tig0030416:-24317 None:intergenic
CCCTTGAGTGTTCAACATTT+CGG 0.288283 tig0030416:-26620 None:intergenic
TCCAGTTCCCTTCCTGCCCC+TGG 0.302069 tig0030416:-24099 None:intergenic
CTTCATTGAGTTGAAGGCTT+TGG 0.318286 tig0030416:-23736 None:intergenic
CAGATTTAACAACACGCTTT+TGG 0.326666 tig0030416:-23464 None:intergenic
TTATGAAGCAACGAGAAAAT+TGG 0.328433 tig0030416:+24631 Msa1443300:CDS
GAGATGAGTGAGGAGTTAAA+AGG 0.329554 tig0030416:+24683 Msa1443300:CDS
TTGTCTTGTCTTGTCTTGTC+TGG 0.330956 tig0030416:-23019 None:intergenic
TATGCACTTAATCTAGATTC+TGG 0.334171 tig0030416:+27148 Msa1443300:three_prime_UTR
AATCATCAACCTTTATGTTT+GGG 0.349179 tig0030416:-24316 None:intergenic
GATTATGCCGCTGCAGCTGC+TGG 0.352272 tig0030416:+26768 Msa1443300:CDS
CCGGGATTTAGTACCTGTTC+TGG 0.353112 tig0030416:-25130 None:intergenic
GGTGGTAGTGGAACGTCTTC+AGG 0.355830 tig0030416:+26792 Msa1443300:CDS
ATTAGCCGCTGCTACAAAAT+CGG 0.356247 tig0030416:-22961 None:intergenic
TAGCAAGAAAGACAGGCTTT+TGG 0.359604 tig0030416:+24001 Msa1443300:CDS
TACCCGCATGGTTAGCCTTA+GGG 0.360330 tig0030416:+27019 Msa1443300:CDS
GGAGGCGGCTATCAGAATTC+AGG 0.361871 tig0030416:+26948 Msa1443300:CDS
ACACTCAAGGGTGCAGGCTT+TGG 0.372615 tig0030416:+26632 Msa1443300:CDS
ATGATGAAGAGAAGGTAAAT+AGG 0.373547 tig0030416:-26461 None:intergenic
CAATGCTTTCAAGATATTCC+TGG 0.380146 tig0030416:-24538 None:intergenic
AGATTTATATGCATATGATA+TGG 0.383704 tig0030416:-26114 None:intergenic
ATGACCGTAGAGGGAGATAA+TGG 0.387791 tig0030416:+24659 Msa1443300:CDS
GGCGCGGAAACCCACCTTCC+CGG 0.387923 tig0030416:+24757 Msa1443300:CDS
GCAAGCTGGGATCAGCCAAC+TGG 0.390557 tig0030416:+26585 Msa1443300:CDS
TCCGGCTTCCTGAGCTGATC+AGG 0.393176 tig0030416:-23894 None:intergenic
AGATTTCAAAGCTTCTTCTA+AGG 0.393340 tig0030416:+24562 Msa1443300:CDS
TAGATAATTTCTCAGTCAAC+TGG 0.394228 tig0030416:-26659 None:intergenic
CTACCCGCATGGTTAGCCTT+AGG 0.397357 tig0030416:+27018 Msa1443300:CDS
GCCAGGGGCAGGAAGGGAAC+TGG 0.399839 tig0030416:+24098 Msa1443300:CDS
GCCTTGCCTTGTTTGAGAAT+AGG 0.400255 tig0030416:-26835 None:intergenic
TGATGATGGCGATGCTCCTT+GGG 0.400541 tig0030416:+23968 Msa1443300:CDS
GCTCAGTTTGATGTTAATCC+AGG 0.401276 tig0030416:+24212 Msa1443300:CDS
CGGGTCCTCCTGAAACTGTC+AGG 0.402283 tig0030416:+26280 Msa1443300:CDS
AGAGCCTTGATGTAAAGATT+AGG 0.402756 tig0030416:-23639 None:intergenic
TACAAAATCGGGAAAGATAT+AGG 0.404456 tig0030416:-22949 None:intergenic
GTGATGATGGCGATGCTCCT+TGG 0.404468 tig0030416:+23967 Msa1443300:CDS
GCTTGAAGATTTCCTTGCTC+AGG 0.408980 tig0030416:+23668 Msa1443300:CDS
AGATACCTGGTAAAAGAATC+TGG 0.410560 tig0030416:-23209 None:intergenic
ATGTAAGATGCACTGATTCC+AGG 0.412950 tig0030416:-26143 None:intergenic
GAGCCTTGATGTAAAGATTA+GGG 0.415850 tig0030416:-23638 None:intergenic
ATGACGGACCCATTCATGTC+TGG 0.416244 tig0030416:+24381 Msa1443300:CDS
CCGTTTGGATCGGTTGGGGC+AGG 0.418045 tig0030416:-23387 None:intergenic
GCCGCTGCAGCTGCTGGTGG+TGG 0.418701 tig0030416:+26774 Msa1443300:CDS
GTTTCCGCGCCACAAGTTCC+GGG 0.419096 tig0030416:-24745 None:intergenic
TGATACTAACACATCCATTA+AGG 0.425287 tig0030416:-24792 None:intergenic
GCAGCTGCTGGTGGTGGTAG+TGG 0.425549 tig0030416:+26780 Msa1443300:CDS
AATGAGTTCAACCCTCTTCA+AGG 0.428889 tig0030416:-24588 None:intergenic
AACAGGGCTATGTCACAGTT+AGG 0.435704 tig0030416:+24980 Msa1443300:CDS
TTGAAGGCTTTGGCATTGCT+GGG 0.436119 tig0030416:-23726 None:intergenic
TGAACATTGGCCGCCATGTT+GGG 0.437116 tig0030416:-26186 None:intergenic
CGTGCAGCACCCAAACATAA+AGG 0.438376 tig0030416:+24307 Msa1443300:CDS
TGCCCATCTCTTCGCCTTGG+AGG 0.438441 tig0030416:-26744 None:intergenic
TCAAAGAGATTCTGGAAGCC+AGG 0.439840 tig0030416:+24081 Msa1443300:CDS
GCATATAAATCTTGAGCTCC+TGG 0.445116 tig0030416:+26125 Msa1443300:CDS
GGCATATGCCCACTGAGGCC+TGG 0.449256 tig0030416:-24230 None:intergenic
TCTTACATCTGCTATGCTGC+TGG 0.451584 tig0030416:+26158 Msa1443300:CDS
CATTGGGAATTTGGGGAAGG+GGG 0.454395 tig0030416:-27229 None:intergenic
ATGAGGAGCTTCATGCAAGC+TGG 0.457408 tig0030416:+26571 Msa1443300:CDS
TTCAGTCAAGCTGGTGGGAG+TGG 0.458684 tig0030416:+26897 Msa1443300:CDS
AAAAGCAAATACTACGTTGA+TGG 0.462288 tig0030416:+23411 Msa1443300:CDS
GGACGAGGAACGGGTGGAGG+CGG 0.464180 tig0030416:+26933 Msa1443300:CDS
ATGAGAATGAAACTAAGAAA+GGG 0.464510 tig0030416:+24351 Msa1443300:CDS
AAGGCAAGGCAGCGGACGTA+CGG 0.464963 tig0030416:+26848 Msa1443300:CDS
TCAGAATCCGACACGGGCTC+CGG 0.466090 tig0030416:-23912 None:intergenic
GTCTTGTCTTGTCTGGAAGA+TGG 0.466648 tig0030416:-23012 None:intergenic
ATGAACATTGGCCGCCATGT+TGG 0.468265 tig0030416:-26187 None:intergenic
AATTATCTTTCAGGAAAGGT+TGG 0.471050 tig0030416:+26074 Msa1443300:intron
TCCTGCCCATCTCTTCGCCT+TGG 0.472750 tig0030416:-26747 None:intergenic
TTAGCCGCTGCTACAAAATC+GGG 0.473817 tig0030416:-22960 None:intergenic
AACTGTCAGGGATCATGTTA+TGG 0.475362 tig0030416:+26293 Msa1443300:CDS
TATTCTAGAGGACGAGGAAC+GGG 0.476091 tig0030416:+26924 Msa1443300:CDS
ACATTGGGAATTTGGGGAAG+GGG 0.484034 tig0030416:-27230 None:intergenic
ATTAAGTGCATAATGATAAA+CGG 0.484508 tig0030416:-27137 None:intergenic
GGGAACTGGAAGGTTTGAAC+AGG 0.485450 tig0030416:+24112 Msa1443300:CDS
GATTCTGAAACTTCTGAGCT+TGG 0.486351 tig0030416:+23927 Msa1443300:CDS
AGAGGACGAGGAACGGGTGG+AGG 0.486498 tig0030416:+26930 Msa1443300:CDS
TAAGTTGCCCCAGACATGAA+TGG 0.490965 tig0030416:-24390 None:intergenic
GTCCTTCAGCATTTCTAGCA+CGG 0.492013 tig0030416:-26409 None:intergenic
TCATGAAAAGACTCCAGAAC+AGG 0.493182 tig0030416:+25117 Msa1443300:CDS
GTGAATATGTTGAGAGACTC+AGG 0.493281 tig0030416:+24480 Msa1443300:CDS
CAGAATTCAGGGAGGACTCA+AGG 0.493339 tig0030416:+26960 Msa1443300:CDS
GAAGCAAGGTTAGGCGGCGG+TGG 0.493372 tig0030416:+26711 Msa1443300:CDS
AAATCAAGGAAGAGGCGCTT+AGG 0.494321 tig0030416:+26433 Msa1443300:CDS
TCCGAAATGTTGAACACTCA+AGG 0.494976 tig0030416:+26619 Msa1443300:CDS
TGACGGACCCATTCATGTCT+GGG 0.497542 tig0030416:+24382 Msa1443300:CDS
GGAAAAGGATGACGAGGATG+AGG 0.497694 tig0030416:+23833 Msa1443300:CDS
GGCAGCGGACGTACGGGATA+CGG 0.498017 tig0030416:+26855 Msa1443300:CDS
CTTGGTAATGACAGGCCTCC+TGG 0.498069 tig0030416:+23945 Msa1443300:CDS
CAGGAATATCTTGAAAGCAT+TGG 0.498525 tig0030416:+24539 Msa1443300:CDS
TTATTCTGGTGGACGGGTGA+AGG 0.499453 tig0030416:+25060 Msa1443300:CDS
GTACGGGATACGGTGGAGGA+AGG 0.505304 tig0030416:+26865 Msa1443300:CDS
CTGGAAGCCAGGGGCAGGAA+GGG 0.505830 tig0030416:+24092 Msa1443300:CDS
ATGTTAATCCAGGCCTCAGT+GGG 0.508312 tig0030416:+24222 Msa1443300:CDS
ACCCGCATGGTTAGCCTTAG+GGG 0.508509 tig0030416:+27020 Msa1443300:CDS
AGATTCTGGAAGCCAGGGGC+AGG 0.509743 tig0030416:+24087 Msa1443300:CDS
AGAATTCAGGGAGGACTCAA+GGG 0.510031 tig0030416:+26961 Msa1443300:CDS
AGAATCTGCAGCTTCTGAGC+AGG 0.511073 tig0030416:-24173 None:intergenic
AAGTTGCCCCAGACATGAAT+GGG 0.512091 tig0030416:-24389 None:intergenic
GATGAGAATGAAACTAAGAA+AGG 0.515170 tig0030416:+24350 Msa1443300:CDS
TCCAAGGCGAAGAGATGGGC+AGG 0.515359 tig0030416:+26746 Msa1443300:CDS
AAGGTTAGGCGGCGGTGGGT+TGG 0.516660 tig0030416:+26716 Msa1443300:CDS
ACCTGATCAGCTCAGGAAGC+CGG 0.516893 tig0030416:+23893 Msa1443300:CDS
TCATTGAACCTGATCAGCTC+AGG 0.519230 tig0030416:+23886 Msa1443300:CDS
TGCTCCGTTTGTTGTTACCC+CGG 0.519622 tig0030416:+24727 Msa1443300:CDS
GATCCCTAATCTTTACATCA+AGG 0.521376 tig0030416:+23635 Msa1443300:CDS
AGGACTTGATTATCAAATGT+AGG 0.523141 tig0030416:+23790 Msa1443300:CDS
CCGAAATGTTGAACACTCAA+GGG 0.523872 tig0030416:+26620 Msa1443300:CDS
CTCAACATATTCACGTGTGT+GGG 0.525787 tig0030416:-24471 None:intergenic
GTGGGTTGGATCTGCCTCCA+AGG 0.528953 tig0030416:+26730 Msa1443300:CDS
TCCCCTAAGGCTAACCATGC+GGG 0.529790 tig0030416:-27021 None:intergenic
TGTTCTTGCACAGAATGTCC+AGG 0.530188 tig0030416:+24520 Msa1443300:CDS
CTGAACTTTATTCTGGTGGA+CGG 0.530497 tig0030416:+25053 Msa1443300:CDS
AAAAGCTTAGCAAGAAAGAC+AGG 0.531266 tig0030416:+23994 Msa1443300:CDS
AACATTGGGAATTTGGGGAA+GGG 0.531414 tig0030416:-27231 None:intergenic
TTTACCGTTTGGATCGGTTG+GGG 0.531670 tig0030416:-23391 None:intergenic
GTAAAAGAATCTGGAAGTCA+TGG 0.531738 tig0030416:-23200 None:intergenic
CTCTCCATTATCTCCCTCTA+CGG 0.531803 tig0030416:-24663 None:intergenic
GGGCTGGTTTCTGAAGCGCA+TGG 0.535363 tig0030416:+25022 Msa1443300:CDS
CCACCTTCCCGGAAAATAGC+AGG 0.535658 tig0030416:+24768 Msa1443300:CDS
GACTCATAAGCAACAGATCA+CGG 0.536368 tig0030416:-24907 None:intergenic
AGGCAAGGCAGCGGACGTAC+GGG 0.536672 tig0030416:+26849 Msa1443300:CDS
GACAGGCCTCCTGGTGATGA+TGG 0.536973 tig0030416:+23954 Msa1443300:CDS
ATGCTATCAAGATCAATGAC+TGG 0.537887 tig0030416:+23538 Msa1443300:CDS
TGTTGTTACCCCGGAACTTG+TGG 0.539965 tig0030416:+24736 Msa1443300:CDS
CTGCCTCCAAGGCGAAGAGA+TGG 0.540348 tig0030416:+26741 Msa1443300:CDS
TTGTCTGAACTTTATTCTGG+TGG 0.542410 tig0030416:+25049 Msa1443300:CDS
CAAGCTGGGATCAGCCAACT+GGG 0.543584 tig0030416:+26586 Msa1443300:CDS
GTGGAACGTCTTCAGGTGGC+AGG 0.543676 tig0030416:+26799 Msa1443300:CDS
AGTTCCGGGGTAACAACAAA+CGG 0.544060 tig0030416:-24731 None:intergenic
TGAGGAGCTTCATGCAAGCT+GGG 0.544437 tig0030416:+26572 Msa1443300:CDS
TAGGGAGAGTCCTGAGAGTG+AGG 0.545078 tig0030416:+23809 Msa1443300:CDS
GGGGCAGGTTCAGTATCACT+AGG 0.547225 tig0030416:-23372 None:intergenic
TATGCCGCTGCAGCTGCTGG+TGG 0.547820 tig0030416:+26771 Msa1443300:CDS
TGTTGAACACTCAAGGGTGC+AGG 0.547851 tig0030416:+26626 Msa1443300:CDS
GGACTTGATTATCAAATGTA+GGG 0.548379 tig0030416:+23791 Msa1443300:CDS
AAGAGATGCAATAATGTCAA+AGG 0.548581 tig0030416:-26355 None:intergenic
TCCTATTCTCAAACAAGGCA+AGG 0.549766 tig0030416:+26834 Msa1443300:CDS
CTTCTGAGCTTGGTAATGAC+AGG 0.550457 tig0030416:+23937 Msa1443300:CDS
AAGATATAGGTAGATAGATA+CGG 0.551424 tig0030416:-22936 None:intergenic
CATAAAGGTTGATGATTCTG+TGG 0.552363 tig0030416:+24322 Msa1443300:CDS
GAAGGACAAAATCAAGGAAG+AGG 0.552869 tig0030416:+26425 Msa1443300:CDS
ACGCTTTGCATCATGAACAT+TGG 0.554176 tig0030416:-26199 None:intergenic
GCGGGTAGAAGTATCTCCGT+GGG 0.555993 tig0030416:-27003 None:intergenic
CTTCTAAGGTAGCCTTGAAG+AGG 0.561694 tig0030416:+24576 Msa1443300:CDS
CAAAGAGATTCTGGAAGCCA+GGG 0.563451 tig0030416:+24082 Msa1443300:CDS
TACGGGATACGGTGGAGGAA+GGG 0.564228 tig0030416:+26866 Msa1443300:CDS
GGGGTAACAACAAACGGAGC+AGG 0.564444 tig0030416:-24725 None:intergenic
TCTGGAAGCCAGGGGCAGGA+AGG 0.564829 tig0030416:+24091 Msa1443300:CDS
AATGCTGAAGGACAAAATCA+AGG 0.565908 tig0030416:+26419 Msa1443300:CDS
CCTGCCCCAACCGATCCAAA+CGG 0.567390 tig0030416:+23387 Msa1443300:CDS
AGTGAGAAACAAACATTCAC+GGG 0.567914 tig0030416:+26261 Msa1443300:CDS
CAGTGAGAAACAAACATTCA+CGG 0.568401 tig0030416:+26260 Msa1443300:CDS
GCATTATCGTTCAGTCAAGC+TGG 0.568957 tig0030416:+26888 Msa1443300:CDS
GTGTCCCATGTGATCTCACT+AGG 0.569429 tig0030416:-24044 None:intergenic
GGACGTACGGGATACGGTGG+AGG 0.570293 tig0030416:+26861 Msa1443300:CDS
CGGAAAATAATGCACCCAGT+TGG 0.571165 tig0030416:-26600 None:intergenic
ATCATATGATTCTTTGAGCG+TGG 0.572793 tig0030416:+26479 Msa1443300:CDS
GGAGCATCGCCATCATCACC+AGG 0.573601 tig0030416:-23963 None:intergenic
TGCCTCCAAGGCGAAGAGAT+GGG 0.574902 tig0030416:+26742 Msa1443300:CDS
ATCATGTTATGGCTGCCACA+AGG 0.575690 tig0030416:+26304 Msa1443300:CDS
CACTGACCTCAAGCAAGCGT+CGG 0.576302 tig0030416:-26242 None:intergenic
GGGAGAGTCCTGAGAGTGAG+GGG 0.577170 tig0030416:+23811 Msa1443300:CDS
GAGGCGGCTATCAGAATTCA+GGG 0.577279 tig0030416:+26949 Msa1443300:CDS
GCTGCTGGAGGTTCCCAACA+TGG 0.578381 tig0030416:+26173 Msa1443300:CDS
AGAATCATATGATGAAGAGA+AGG 0.578443 tig0030416:-26469 None:intergenic
GTATCACTGATATACAAATA+CGG 0.579558 tig0030416:+24809 Msa1443300:CDS
TCTCAACATATTCACGTGTG+TGG 0.579942 tig0030416:-24472 None:intergenic
TGAACTTTATTCTGGTGGAC+GGG 0.580196 tig0030416:+25054 Msa1443300:CDS
AAAAGCCTAGTGAGATCACA+TGG 0.585381 tig0030416:+24039 Msa1443300:CDS
AAACATTGGGAATTTGGGGA+AGG 0.586416 tig0030416:-27232 None:intergenic
TACATCTGCTATGCTGCTGG+AGG 0.586476 tig0030416:+26161 Msa1443300:CDS
AGGTTCAATGATCTCATCAT+CGG 0.587424 tig0030416:-23874 None:intergenic
CTATTCTAGAGGACGAGGAA+CGG 0.587856 tig0030416:+26923 Msa1443300:CDS
GTTGCTTCATAAACCTCATG+CGG 0.588345 tig0030416:-24620 None:intergenic
GCTACAGAAGCAAGGTTAGG+CGG 0.590150 tig0030416:+26705 Msa1443300:CDS
TGAGAATGAAACTAAGAAAG+GGG 0.591503 tig0030416:+24352 Msa1443300:CDS
GTCAAGCACGAACTCCCCTA+AGG 0.592556 tig0030416:-27034 None:intergenic
ACCACCACCAGCAGCTGCAG+CGG 0.592682 tig0030416:-26775 None:intergenic
TTCTAAGGTAGCCTTGAAGA+GGG 0.593307 tig0030416:+24577 Msa1443300:CDS
GAATTTCCGACGCTTGCTTG+AGG 0.593870 tig0030416:+26236 Msa1443300:CDS
AGAGCTACAGAAGCAAGGTT+AGG 0.594295 tig0030416:+26702 Msa1443300:CDS
GTGAAGGAATTGCTTGCGCA+AGG 0.594439 tig0030416:+25076 Msa1443300:CDS
ACTCATAAGCAACAGATCAC+GGG 0.595404 tig0030416:-24906 None:intergenic
AGATAATGGAGAGATGAGTG+AGG 0.595500 tig0030416:+24673 Msa1443300:CDS
AAGCAAGGTTAGGCGGCGGT+GGG 0.595912 tig0030416:+26712 Msa1443300:CDS
CATTTACTACAAACCGCATG+AGG 0.596878 tig0030416:+24607 Msa1443300:CDS
TGCTATCAAGATCAATGACT+GGG 0.597590 tig0030416:+23539 Msa1443300:CDS
AGGAAAGGTTGGAAAGAAGA+CGG 0.598493 tig0030416:+26085 Msa1443300:intron
GGGAGTGGCGGCTATTCTAG+AGG 0.598572 tig0030416:+26912 Msa1443300:CDS
TCTCAAACAAGGCAAGGCAG+CGG 0.598804 tig0030416:+26840 Msa1443300:CDS
TTTCCGCGCCACAAGTTCCG+GGG 0.599206 tig0030416:-24744 None:intergenic
AGGGAGAGTCCTGAGAGTGA+GGG 0.600175 tig0030416:+23810 Msa1443300:CDS
CGGAGATACTTCTACCCGCA+TGG 0.602013 tig0030416:+27007 Msa1443300:CDS
TCTAGAGGACGAGGAACGGG+TGG 0.602993 tig0030416:+26927 Msa1443300:CDS
TTGGCTGAGATGACCGTAGA+GGG 0.603596 tig0030416:+24650 Msa1443300:CDS
ATGAAAGAGCTACAGAAGCA+AGG 0.604351 tig0030416:+26697 Msa1443300:CDS
AGTCAAGCTGGTGGGAGTGG+CGG 0.604909 tig0030416:+26900 Msa1443300:CDS
AATATCAGTGGGTTCATCGT+CGG 0.606448 tig0030416:-23340 None:intergenic
CAGGAAGCCGGAGCCCGTGT+CGG 0.608070 tig0030416:+23905 Msa1443300:CDS
GGCGGCTATTCTAGAGGACG+AGG 0.609346 tig0030416:+26918 Msa1443300:CDS
ACAAGACAAGACAAGACAAG+AGG 0.610589 tig0030416:+23023 Msa1443300:five_prime_UTR
AAGAATCTGGAAGTCATGGT+AGG 0.611325 tig0030416:-23196 None:intergenic
AGGTTCATCATCAATATCAG+TGG 0.614512 tig0030416:-23352 None:intergenic
GGGTCCTCCTGAAACTGTCA+GGG 0.614834 tig0030416:+26281 Msa1443300:CDS
GAATTCAGGGAGGACTCAAG+GGG 0.615559 tig0030416:+26962 Msa1443300:CDS
TTATTGCATCTCTTGATGTG+TGG 0.615728 tig0030416:+26364 Msa1443300:CDS
ACTTGTCCTATTCTCAAACA+AGG 0.620485 tig0030416:+26829 Msa1443300:CDS
ACAGAAGCAAGGTTAGGCGG+CGG 0.622574 tig0030416:+26708 Msa1443300:CDS
GGTTCATCATCAATATCAGT+GGG 0.623181 tig0030416:-23351 None:intergenic
CGCCGTGCTAGAAATGCTGA+AGG 0.624899 tig0030416:+26407 Msa1443300:CDS
TCCATTAATAAGAACCCTTG+TGG 0.625098 tig0030416:-26319 None:intergenic
TATTAGCAGAAGCCTGAGCA+AGG 0.625753 tig0030416:-23680 None:intergenic
TCATGTTATGGCTGCCACAA+GGG 0.627218 tig0030416:+26305 Msa1443300:CDS
TATCGTTCAGTCAAGCTGGT+GGG 0.636549 tig0030416:+26892 Msa1443300:CDS
GAACGTCTTCAGGTGGCAGG+TGG 0.637601 tig0030416:+26802 Msa1443300:CDS
TTATCGTTCAGTCAAGCTGG+TGG 0.639308 tig0030416:+26891 Msa1443300:CDS
AAGAAAGGGGATGACTATGA+CGG 0.642172 tig0030416:+24365 Msa1443300:CDS
GTGTTCATAGTATTGTCAGT+AGG 0.642718 tig0030416:+26538 Msa1443300:CDS
GATGACAGTGACGATGATGA+TGG 0.643930 tig0030416:+23441 Msa1443300:CDS
TCAACATATTCACGTGTGTG+GGG 0.645878 tig0030416:-24470 None:intergenic
GAAGTTTCAGAATCCGACAC+GGG 0.650738 tig0030416:-23918 None:intergenic
TATTAATGGAGATTTCCAGA+AGG 0.655339 tig0030416:+26332 Msa1443300:CDS
AAAATGCGTGCAGAATATGC+TGG 0.655482 tig0030416:+24268 Msa1443300:CDS
GGGGCAGGAAGGGAACTGGA+AGG 0.655940 tig0030416:+24102 Msa1443300:CDS
GCAAGAAAATGTTCACCACA+TGG 0.657602 tig0030416:+24934 Msa1443300:CDS
GGTAGTGGAACGTCTTCAGG+TGG 0.658306 tig0030416:+26795 Msa1443300:CDS
TGCGGGTAGAAGTATCTCCG+TGG 0.660998 tig0030416:-27004 None:intergenic
CTCCCCTAAGGCTAACCATG+CGG 0.664230 tig0030416:-27022 None:intergenic
TCTACTTTGAGGGGACCCCA+CGG 0.665115 tig0030416:+26987 Msa1443300:CDS
TTACCCCGGAACTTGTGGCG+CGG 0.666773 tig0030416:+24741 Msa1443300:CDS
CAAACTCATCAAGAAGAGCA+TGG 0.667504 tig0030416:-24877 None:intergenic
GATGTTAATCCAGGCCTCAG+TGG 0.669943 tig0030416:+24221 Msa1443300:CDS
CAGTAGGATGATGATCAATG+AGG 0.670922 tig0030416:+26554 Msa1443300:CDS
GGAGAGTCCTGAGAGTGAGG+GGG 0.672377 tig0030416:+23812 Msa1443300:CDS
AGCGGACGTACGGGATACGG+TGG 0.674527 tig0030416:+26858 Msa1443300:CDS
TGTGCAAGAACAACAAACTG+AGG 0.676475 tig0030416:-24509 None:intergenic
GGCATATGCCCATAAATGTG+TGG 0.678845 tig0030416:+24243 Msa1443300:CDS
GACGGACCCATTCATGTCTG+GGG 0.680909 tig0030416:+24383 Msa1443300:CDS
TGAATATGTTGAGAGACTCA+GGG 0.682868 tig0030416:+24481 Msa1443300:CDS
AGAAGTTTCAGAATCCGACA+CGG 0.685846 tig0030416:-23919 None:intergenic
ATTGGCTGAGATGACCGTAG+AGG 0.686209 tig0030416:+24649 Msa1443300:CDS
CTGACAATACTATGAACACG+AGG 0.689117 tig0030416:-26534 None:intergenic
GCTGGAGGTTCCCAACATGG+CGG 0.693046 tig0030416:+26176 Msa1443300:CDS
ATTCTTGATCTGATCAACAG+TGG 0.701566 tig0030416:-23517 None:intergenic
AAAGAGATTCTGGAAGCCAG+GGG 0.701656 tig0030416:+24083 Msa1443300:CDS
GCATCGCCATCATCACCAGG+AGG 0.707685 tig0030416:-23960 None:intergenic
TGATCCCTGACAGTTTCAGG+AGG 0.717851 tig0030416:-26285 None:intergenic
AATTCAGGGAGGACTCAAGG+GGG 0.722566 tig0030416:+26963 Msa1443300:CDS
CGGGTAGAAGTATCTCCGTG+GGG 0.734112 tig0030416:-27002 None:intergenic
AAAGCCTAGTGAGATCACAT+GGG 0.747188 tig0030416:+24040 Msa1443300:CDS
GAAGAACAATAAGCAATACG+AGG 0.757858 tig0030416:+23770 Msa1443300:CDS
TTATGGGCATATGCCCACTG+AGG 0.770132 tig0030416:-24235 None:intergenic
GCGGCTATCAGAATTCAGGG+AGG 0.799750 tig0030416:+26952 Msa1443300:CDS
TTTGTGTCGAAATGTCCATG+TGG 0.823137 tig0030416:-24949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATAGAAAAAATAAA+AGG + tig0030416:25307-25326 Msa1443300:intron 10.0%
!! CAGAAATTAAATTTGATTAT+TGG + tig0030416:25436-25455 Msa1443300:intron 15.0%
!!! TATTTTCCTTTAATTTTCTA+TGG - tig0030416:25617-25636 None:intergenic 15.0%
!!! TAAATTTTTTTGAATTGAGT+GGG - tig0030416:25688-25707 None:intergenic 15.0%
!!! ATAAATTTTTTTGAATTGAG+TGG - tig0030416:25689-25708 None:intergenic 15.0%
!!! AAAAAATTTATTTTTGCCAT+TGG + tig0030416:25698-25717 Msa1443300:intron 15.0%
!! AAAAGAACATATTATTGCAT+TGG - tig0030416:23291-23310 None:intergenic 20.0%
!!! ATATGTTCTTTTCTATTGTT+AGG + tig0030416:23299-23318 Msa1443300:intron 20.0%
!!! TATGTTCTTTTCTATTGTTA+GGG + tig0030416:23300-23319 Msa1443300:intron 20.0%
!! ATCTATTTGAAAAAAATAGC+CGG - tig0030416:25152-25171 None:intergenic 20.0%
!! TGTCAATGTAAAGATAAATA+AGG - tig0030416:25356-25375 None:intergenic 20.0%
!! TATAATATTATTGCTCAACT+TGG + tig0030416:25403-25422 Msa1443300:intron 20.0%
!!! TGTTTTTGTTTTTGTTTCTA+AGG + tig0030416:25499-25518 Msa1443300:intron 20.0%
!!! TTTTATTTTCATCTTGTTAC+TGG + tig0030416:25533-25552 Msa1443300:intron 20.0%
!!! TTTATTTTCATCTTGTTACT+GGG + tig0030416:25534-25553 Msa1443300:intron 20.0%
!! TATAAGCCATAGAAAATTAA+AGG + tig0030416:25608-25627 Msa1443300:intron 20.0%
!!! AAATTTTTTTGAATTGAGTG+GGG - tig0030416:25687-25706 None:intergenic 20.0%
!!! CATACTTTATATTGGATTTT+TGG + tig0030416:25966-25985 Msa1443300:intron 20.0%
!! CTATTCTTTAATTATCTTTC+AGG + tig0030416:26065-26084 Msa1443300:intron 20.0%
!! AGATTTATATGCATATGATA+TGG - tig0030416:26117-26136 None:intergenic 20.0%
!! ATTAAGTGCATAATGATAAA+CGG - tig0030416:27140-27159 None:intergenic 20.0%
!!! ATGCATTTTTTTTTTTTGAG+AGG + tig0030416:27304-27323 Msa1443300:three_prime_UTR 20.0%
! AAGATATAGGTAGATAGATA+CGG - tig0030416:22939-22958 None:intergenic 25.0%
! AAAATCGAGAATTAAGGTTA+TGG - tig0030416:23057-23076 None:intergenic 25.0%
! AACAACAAAATCGAGAATTA+AGG - tig0030416:23063-23082 None:intergenic 25.0%
!!! CATTTTTTCCACACATTTAT+GGG - tig0030416:24254-24273 None:intergenic 25.0%
! AATCATCAACCTTTATGTTT+GGG - tig0030416:24319-24338 None:intergenic 25.0%
! ATGAGAATGAAACTAAGAAA+GGG + tig0030416:24351-24370 Msa1443300:CDS 25.0%
! GTATCACTGATATACAAATA+CGG + tig0030416:24809-24828 Msa1443300:CDS 25.0%
!!! GACACAAATACTTTTTAACA+GGG + tig0030416:24964-24983 Msa1443300:CDS 25.0%
! TCTATTTGAAAAAAATAGCC+GGG - tig0030416:25151-25170 None:intergenic 25.0%
!! CTTTATTAATGTACTTGTTG+TGG + tig0030416:25186-25205 Msa1443300:intron 25.0%
! AGAAAAAATAAAAGGTGATC+TGG + tig0030416:25315-25334 Msa1443300:intron 25.0%
!! TTATTTTCATCTTGTTACTG+GGG + tig0030416:25535-25554 Msa1443300:intron 25.0%
! TTTCTATGGCTTATACAATA+GGG - tig0030416:25603-25622 None:intergenic 25.0%
!! TTTTCTATGGCTTATACAAT+AGG - tig0030416:25604-25623 None:intergenic 25.0%
! TTTCAGTTATGCTAAAAGTA+AGG - tig0030416:25750-25769 None:intergenic 25.0%
!! TAATCGTAATCCGAAATTTT+GGG - tig0030416:25912-25931 None:intergenic 25.0%
!! ATAATCGTAATCCGAAATTT+TGG - tig0030416:25913-25932 None:intergenic 25.0%
! TAAAGGCTCATACTTTATAT+TGG + tig0030416:25958-25977 Msa1443300:intron 25.0%
! CTTTAATTATCTTTCAGGAA+AGG + tig0030416:26070-26089 Msa1443300:intron 25.0%
! AAGCTGTAATACTGAATAAA+TGG - tig0030416:27072-27091 None:intergenic 25.0%
!! GAATATTGTTTTCTGTCTTT+CGG + tig0030416:27107-27126 Msa1443300:intron 25.0%
! ACAAAAAACATTGGGAATTT+GGG - tig0030416:27240-27259 None:intergenic 25.0%
! AACAAAAAACATTGGGAATT+TGG - tig0030416:27241-27260 None:intergenic 25.0%
! TTGGAACAACAAAAAACATT+GGG - tig0030416:27248-27267 None:intergenic 25.0%
! ATTGGAACAACAAAAAACAT+TGG - tig0030416:27249-27268 None:intergenic 25.0%
! CCAAAAATCAGAATAAAGAT+TGG - tig0030416:27267-27286 None:intergenic 25.0%
!! CCAATCTTTATTCTGATTTT+TGG + tig0030416:27264-27283 Msa1443300:three_prime_UTR 25.0%
!!! ATCTTTATTCTGATTTTTGG+CGG + tig0030416:27267-27286 Msa1443300:three_prime_UTR 25.0%
TACAAAATCGGGAAAGATAT+AGG - tig0030416:22952-22971 None:intergenic 30.0%
!! GCTAATCTGTTGTTGATTTA+GGG + tig0030416:22978-22997 Msa1443300:five_prime_UTR 30.0%
!! TAGTATTTGCTTTTACCGTT+TGG - tig0030416:23405-23424 None:intergenic 30.0%
AAAAGCAAATACTACGTTGA+TGG + tig0030416:23411-23430 Msa1443300:CDS 30.0%
! GTAAAGATTAGGGATCTTTT+GGG - tig0030416:23631-23650 None:intergenic 30.0%
! TGTAAAGATTAGGGATCTTT+TGG - tig0030416:23632-23651 None:intergenic 30.0%
!!! TTTTTGCTTCATTGAGTTGA+AGG - tig0030416:23745-23764 None:intergenic 30.0%
AGGACTTGATTATCAAATGT+AGG + tig0030416:23790-23809 Msa1443300:CDS 30.0%
GGACTTGATTATCAAATGTA+GGG + tig0030416:23791-23810 Msa1443300:CDS 30.0%
! TTTAGCAACTTTTGTTAGGA+AGG - tig0030416:24150-24169 None:intergenic 30.0%
!!! GTGTTTTAGCAACTTTTGTT+AGG - tig0030416:24154-24173 None:intergenic 30.0%
!!! GCATTTTTTCCACACATTTA+TGG - tig0030416:24255-24274 None:intergenic 30.0%
GAATCATCAACCTTTATGTT+TGG - tig0030416:24320-24339 None:intergenic 30.0%
GATGAGAATGAAACTAAGAA+AGG + tig0030416:24350-24369 Msa1443300:CDS 30.0%
TGAGAATGAAACTAAGAAAG+GGG + tig0030416:24352-24371 Msa1443300:CDS 30.0%
AGATTTCAAAGCTTCTTCTA+AGG + tig0030416:24562-24581 Msa1443300:CDS 30.0%
TTATGAAGCAACGAGAAAAT+TGG + tig0030416:24631-24650 Msa1443300:CDS 30.0%
TGATACTAACACATCCATTA+AGG - tig0030416:24795-24814 None:intergenic 30.0%
!! CGACACAAATACTTTTTAAC+AGG + tig0030416:24963-24982 Msa1443300:CDS 30.0%
TGTTTGTCTGAACTTTATTC+TGG + tig0030416:25046-25065 Msa1443300:CDS 30.0%
ATCTTTACATTGACATTGAG+TGG + tig0030416:25361-25380 Msa1443300:intron 30.0%
TCTTTACATTGACATTGAGT+GGG + tig0030416:25362-25381 Msa1443300:intron 30.0%
! TATTTTCATCTTGTTACTGG+GGG + tig0030416:25536-25555 Msa1443300:intron 30.0%
!! TATTTTTGCCATTGGTAGTT+CGG + tig0030416:25706-25725 Msa1443300:intron 30.0%
TAGCATAACTGAAATTGATG+AGG + tig0030416:25756-25775 Msa1443300:intron 30.0%
AGCATAACTGAAATTGATGA+GGG + tig0030416:25757-25776 Msa1443300:intron 30.0%
ATGTTCAAACCCCAAAATTT+CGG + tig0030416:25899-25918 Msa1443300:intron 30.0%
! AATCGTAATCCGAAATTTTG+GGG - tig0030416:25911-25930 None:intergenic 30.0%
GTGAATACCACAAACAATAA+AGG + tig0030416:25941-25960 Msa1443300:intron 30.0%
!! GGATTTTTGGAAATCCTAAT+CGG + tig0030416:25979-25998 Msa1443300:intron 30.0%
AATTATCTTTCAGGAAAGGT+TGG + tig0030416:26074-26093 Msa1443300:intron 30.0%
TATTAATGGAGATTTCCAGA+AGG + tig0030416:26332-26351 Msa1443300:CDS 30.0%
AAGAGATGCAATAATGTCAA+AGG - tig0030416:26358-26377 None:intergenic 30.0%
ATGATGAAGAGAAGGTAAAT+AGG - tig0030416:26464-26483 None:intergenic 30.0%
AGAATCATATGATGAAGAGA+AGG - tig0030416:26472-26491 None:intergenic 30.0%
TAGATAATTTCTCAGTCAAC+TGG - tig0030416:26662-26681 None:intergenic 30.0%
TATGCACTTAATCTAGATTC+TGG + tig0030416:27148-27167 Msa1443300:three_prime_UTR 30.0%
CAAAAAACATTGGGAATTTG+GGG - tig0030416:27239-27258 None:intergenic 30.0%
!! GGCTAATCTGTTGTTGATTT+AGG + tig0030416:22977-22996 Msa1443300:five_prime_UTR 35.0%
GTAAAAGAATCTGGAAGTCA+TGG - tig0030416:23203-23222 None:intergenic 35.0%
AGATACCTGGTAAAAGAATC+TGG - tig0030416:23212-23231 None:intergenic 35.0%
GAGTAAGAAATGAAGATACC+TGG - tig0030416:23225-23244 None:intergenic 35.0%
! GTTCTTTTCTATTGTTAGGG+TGG + tig0030416:23303-23322 Msa1443300:intron 35.0%
GGTTCATCATCAATATCAGT+GGG - tig0030416:23354-23373 None:intergenic 35.0%
AGGTTCATCATCAATATCAG+TGG - tig0030416:23355-23374 None:intergenic 35.0%
!! TTTGCTTTTACCGTTTGGAT+CGG - tig0030416:23400-23419 None:intergenic 35.0%
! CAGATTTAACAACACGCTTT+TGG - tig0030416:23467-23486 None:intergenic 35.0%
!! AGATAAGCGTTTTGATGAGA+TGG + tig0030416:23491-23510 Msa1443300:CDS 35.0%
ATTCTTGATCTGATCAACAG+TGG - tig0030416:23520-23539 None:intergenic 35.0%
ATGCTATCAAGATCAATGAC+TGG + tig0030416:23538-23557 Msa1443300:CDS 35.0%
TGCTATCAAGATCAATGACT+GGG + tig0030416:23539-23558 Msa1443300:CDS 35.0%
GATCCCTAATCTTTACATCA+AGG + tig0030416:23635-23654 Msa1443300:CDS 35.0%
GAGCCTTGATGTAAAGATTA+GGG - tig0030416:23641-23660 None:intergenic 35.0%
AGAGCCTTGATGTAAAGATT+AGG - tig0030416:23642-23661 None:intergenic 35.0%
GAAGAACAATAAGCAATACG+AGG + tig0030416:23770-23789 Msa1443300:CDS 35.0%
AGGTTCAATGATCTCATCAT+CGG - tig0030416:23877-23896 None:intergenic 35.0%
AAAAGCTTAGCAAGAAAGAC+AGG + tig0030416:23994-24013 Msa1443300:CDS 35.0%
CAAGAAGTTCAAAGAGATTC+TGG + tig0030416:24073-24092 Msa1443300:CDS 35.0%
!! CATAAAGGTTGATGATTCTG+TGG + tig0030416:24322-24341 Msa1443300:CDS 35.0%
TGAATATGTTGAGAGACTCA+GGG + tig0030416:24481-24500 Msa1443300:CDS 35.0%
CAATGCTTTCAAGATATTCC+TGG - tig0030416:24541-24560 None:intergenic 35.0%
! CAGGAATATCTTGAAAGCAT+TGG + tig0030416:24539-24558 Msa1443300:CDS 35.0%
! TGAGGAGTTAAAAGGTTTTG+AGG + tig0030416:24691-24710 Msa1443300:CDS 35.0%
!!! ATTAAGGTCCTGCTATTTTC+CGG - tig0030416:24779-24798 None:intergenic 35.0%
! AGTTAGGTCTATGTGCTTTT+CGG + tig0030416:24996-25015 Msa1443300:CDS 35.0%
TTGTCTGAACTTTATTCTGG+TGG + tig0030416:25049-25068 Msa1443300:CDS 35.0%
! CTGGAGTCTTTTCATGATAA+CGG - tig0030416:25114-25133 None:intergenic 35.0%
CAAATAGATGTCTCATAGCA+TGG + tig0030416:25163-25182 Msa1443300:intron 35.0%
ATCAGATACAATGTAAGCAC+CGG - tig0030416:25223-25242 None:intergenic 35.0%
!! TTTCTTTAGAGCAGTGACAT+TGG - tig0030416:25271-25290 None:intergenic 35.0%
CTTTACATTGACATTGAGTG+GGG + tig0030416:25363-25382 Msa1443300:intron 35.0%
! GTGGGGATTAATCAATTTTG+AGG + tig0030416:25380-25399 Msa1443300:intron 35.0%
TGTTAAACTCATAGAGCATG+AGG + tig0030416:25641-25660 Msa1443300:intron 35.0%
GTTAAACTCATAGAGCATGA+GGG + tig0030416:25642-25661 Msa1443300:intron 35.0%
TTAAACTCATAGAGCATGAG+GGG + tig0030416:25643-25662 Msa1443300:intron 35.0%
AAAAGTAAGGCACACTTTGT+TGG - tig0030416:25737-25756 None:intergenic 35.0%
! CATGCTCTTATTTCACTACA+TGG - tig0030416:25807-25826 None:intergenic 35.0%
! TCACAGAAAGTTTTCTGTCT+TGG + tig0030416:25875-25894 Msa1443300:intron 35.0%
GTATGAGCCTTTATTGTTTG+TGG - tig0030416:25951-25970 None:intergenic 35.0%
! TTTGCCGTATTTCTATCTAC+CGG + tig0030416:26007-26026 Msa1443300:intron 35.0%
CAGTGAGAAACAAACATTCA+CGG + tig0030416:26260-26279 Msa1443300:CDS 35.0%
AGTGAGAAACAAACATTCAC+GGG + tig0030416:26261-26280 Msa1443300:CDS 35.0%
TCCATTAATAAGAACCCTTG+TGG - tig0030416:26322-26341 None:intergenic 35.0%
TTATTGCATCTCTTGATGTG+TGG + tig0030416:26364-26383 Msa1443300:CDS 35.0%
AATGCTGAAGGACAAAATCA+AGG + tig0030416:26419-26438 Msa1443300:CDS 35.0%
ATCATATGATTCTTTGAGCG+TGG + tig0030416:26479-26498 Msa1443300:CDS 35.0%
GTGTTCATAGTATTGTCAGT+AGG + tig0030416:26538-26557 Msa1443300:CDS 35.0%
ACTTGTCCTATTCTCAAACA+AGG + tig0030416:26829-26848 Msa1443300:CDS 35.0%
ATTAGCCGCTGCTACAAAAT+CGG - tig0030416:22964-22983 None:intergenic 40.0%
TTGTCTTGTCTTGTCTTGTC+TGG - tig0030416:23022-23041 None:intergenic 40.0%
ACAAGACAAGACAAGACAAG+AGG + tig0030416:23023-23042 Msa1443300:five_prime_UTR 40.0%
AAGAATCTGGAAGTCATGGT+AGG - tig0030416:23199-23218 None:intergenic 40.0%
! GACTTCCAGATTCTTTTACC+AGG + tig0030416:23204-23223 Msa1443300:CDS 40.0%
! AATATCAGTGGGTTCATCGT+CGG - tig0030416:23343-23362 None:intergenic 40.0%
! TTTTACCGTTTGGATCGGTT+GGG - tig0030416:23395-23414 None:intergenic 40.0%
!! CTTCATTGAGTTGAAGGCTT+TGG - tig0030416:23739-23758 None:intergenic 40.0%
AGAAGTTTCAGAATCCGACA+CGG - tig0030416:23922-23941 None:intergenic 40.0%
!! GATTCTGAAACTTCTGAGCT+TGG + tig0030416:23927-23946 Msa1443300:CDS 40.0%
! TTGCTAAGCTTTTGATCCCA+AGG - tig0030416:23987-24006 None:intergenic 40.0%
! TAGCAAGAAAGACAGGCTTT+TGG + tig0030416:24001-24020 Msa1443300:CDS 40.0%
AAAAGCCTAGTGAGATCACA+TGG + tig0030416:24039-24058 Msa1443300:CDS 40.0%
AAAGCCTAGTGAGATCACAT+GGG + tig0030416:24040-24059 Msa1443300:CDS 40.0%
GCTCAGTTTGATGTTAATCC+AGG + tig0030416:24212-24231 Msa1443300:CDS 40.0%
AAAATGCGTGCAGAATATGC+TGG + tig0030416:24268-24287 Msa1443300:CDS 40.0%
AAGAAAGGGGATGACTATGA+CGG + tig0030416:24365-24384 Msa1443300:CDS 40.0%
CTGCAAGCTCTTGAAAAACT+CGG - tig0030416:24441-24460 None:intergenic 40.0%
TCAACATATTCACGTGTGTG+GGG - tig0030416:24473-24492 None:intergenic 40.0%
CTCAACATATTCACGTGTGT+GGG - tig0030416:24474-24493 None:intergenic 40.0%
TCTCAACATATTCACGTGTG+TGG - tig0030416:24475-24494 None:intergenic 40.0%
GTGAATATGTTGAGAGACTC+AGG + tig0030416:24480-24499 Msa1443300:CDS 40.0%
TGTGCAAGAACAACAAACTG+AGG - tig0030416:24512-24531 None:intergenic 40.0%
!! TTCTAAGGTAGCCTTGAAGA+GGG + tig0030416:24577-24596 Msa1443300:CDS 40.0%
AATGAGTTCAACCCTCTTCA+AGG - tig0030416:24591-24610 None:intergenic 40.0%
CATTTACTACAAACCGCATG+AGG + tig0030416:24607-24626 Msa1443300:CDS 40.0%
GTTGCTTCATAAACCTCATG+CGG - tig0030416:24623-24642 None:intergenic 40.0%
!! AGATAATGGAGAGATGAGTG+AGG + tig0030416:24673-24692 Msa1443300:CDS 40.0%
GAGATGAGTGAGGAGTTAAA+AGG + tig0030416:24683-24702 Msa1443300:CDS 40.0%
!!! TTAAGGTCCTGCTATTTTCC+GGG - tig0030416:24778-24797 None:intergenic 40.0%
GGAAAATAGCAGGACCTTAA+TGG + tig0030416:24778-24797 Msa1443300:CDS 40.0%
CAAACTCATCAAGAAGAGCA+TGG - tig0030416:24880-24899 None:intergenic 40.0%
ACTCATAAGCAACAGATCAC+GGG - tig0030416:24909-24928 None:intergenic 40.0%
GACTCATAAGCAACAGATCA+CGG - tig0030416:24910-24929 None:intergenic 40.0%
GCAAGAAAATGTTCACCACA+TGG + tig0030416:24934-24953 Msa1443300:CDS 40.0%
TTTGTGTCGAAATGTCCATG+TGG - tig0030416:24952-24971 None:intergenic 40.0%
! GTTAGGTCTATGTGCTTTTC+GGG + tig0030416:24997-25016 Msa1443300:CDS 40.0%
CTGAACTTTATTCTGGTGGA+CGG + tig0030416:25053-25072 Msa1443300:CDS 40.0%
! TGAACTTTATTCTGGTGGAC+GGG + tig0030416:25054-25073 Msa1443300:CDS 40.0%
TCATGAAAAGACTCCAGAAC+AGG + tig0030416:25117-25136 Msa1443300:CDS 40.0%
GAATTGAGTGGGGTAAGAAA+AGG - tig0030416:25677-25696 None:intergenic 40.0%
! TTGCCGTATTTCTATCTACC+GGG + tig0030416:26008-26027 Msa1443300:intron 40.0%
TGACCCGGTAGATAGAAATA+CGG - tig0030416:26014-26033 None:intergenic 40.0%
AGGAAAGGTTGGAAAGAAGA+CGG + tig0030416:26085-26104 Msa1443300:intron 40.0%
GCATATAAATCTTGAGCTCC+TGG + tig0030416:26125-26144 Msa1443300:CDS 40.0%
!! ATGTAAGATGCACTGATTCC+AGG - tig0030416:26146-26165 None:intergenic 40.0%
ACGCTTTGCATCATGAACAT+TGG - tig0030416:26202-26221 None:intergenic 40.0%
AACTGTCAGGGATCATGTTA+TGG + tig0030416:26293-26312 Msa1443300:CDS 40.0%
GCCACAAGGGTTCTTATTAA+TGG + tig0030416:26318-26337 Msa1443300:CDS 40.0%
CAATAATGTCAAAGGCCTTC+TGG - tig0030416:26350-26369 None:intergenic 40.0%
GAAGGACAAAATCAAGGAAG+AGG + tig0030416:26425-26444 Msa1443300:CDS 40.0%
CTGACAATACTATGAACACG+AGG - tig0030416:26537-26556 None:intergenic 40.0%
CAGTAGGATGATGATCAATG+AGG + tig0030416:26554-26573 Msa1443300:CDS 40.0%
TCCGAAATGTTGAACACTCA+AGG + tig0030416:26619-26638 Msa1443300:CDS 40.0%
CCCTTGAGTGTTCAACATTT+CGG - tig0030416:26623-26642 None:intergenic 40.0%
CCGAAATGTTGAACACTCAA+GGG + tig0030416:26620-26639 Msa1443300:CDS 40.0%
ATGAAAGAGCTACAGAAGCA+AGG + tig0030416:26697-26716 Msa1443300:CDS 40.0%
TCCTATTCTCAAACAAGGCA+AGG + tig0030416:26834-26853 Msa1443300:CDS 40.0%
AACATTGGGAATTTGGGGAA+GGG - tig0030416:27234-27253 None:intergenic 40.0%
AAACATTGGGAATTTGGGGA+AGG - tig0030416:27235-27254 None:intergenic 40.0%
! CTTTCCCGATTTTGTAGCAG+CGG + tig0030416:22956-22975 Msa1443300:five_prime_UTR 45.0%
TTAGCCGCTGCTACAAAATC+GGG - tig0030416:22963-22982 None:intergenic 45.0%
GTCTTGTCTTGTCTGGAAGA+TGG - tig0030416:23015-23034 None:intergenic 45.0%
TTTACCGTTTGGATCGGTTG+GGG - tig0030416:23394-23413 None:intergenic 45.0%
! CTTTTACCGTTTGGATCGGT+TGG - tig0030416:23396-23415 None:intergenic 45.0%
GATGACAGTGACGATGATGA+TGG + tig0030416:23441-23460 Msa1443300:CDS 45.0%
GCTTGAAGATTTCCTTGCTC+AGG + tig0030416:23668-23687 Msa1443300:CDS 45.0%
TATTAGCAGAAGCCTGAGCA+AGG - tig0030416:23683-23702 None:intergenic 45.0%
TGCTCAGGCTTCTGCTAATA+AGG + tig0030416:23683-23702 Msa1443300:CDS 45.0%
! TTGAAGGCTTTGGCATTGCT+GGG - tig0030416:23729-23748 None:intergenic 45.0%
TCATTGAACCTGATCAGCTC+AGG + tig0030416:23886-23905 Msa1443300:CDS 45.0%
GAAGTTTCAGAATCCGACAC+GGG - tig0030416:23921-23940 None:intergenic 45.0%
!! CTTCTGAGCTTGGTAATGAC+AGG + tig0030416:23937-23956 Msa1443300:CDS 45.0%
! TCAAAGAGATTCTGGAAGCC+AGG + tig0030416:24081-24100 Msa1443300:CDS 45.0%
! CAAAGAGATTCTGGAAGCCA+GGG + tig0030416:24082-24101 Msa1443300:CDS 45.0%
! AAAGAGATTCTGGAAGCCAG+GGG + tig0030416:24083-24102 Msa1443300:CDS 45.0%
! GCTGCAGATTCTTTTCAGTG+TGG + tig0030416:24184-24203 Msa1443300:CDS 45.0%
ATGTTAATCCAGGCCTCAGT+GGG + tig0030416:24222-24241 Msa1443300:CDS 45.0%
GGCATATGCCCATAAATGTG+TGG + tig0030416:24243-24262 Msa1443300:CDS 45.0%
AAGTTGCCCCAGACATGAAT+GGG - tig0030416:24392-24411 None:intergenic 45.0%
TAAGTTGCCCCAGACATGAA+TGG - tig0030416:24393-24412 None:intergenic 45.0%
TGTTCTTGCACAGAATGTCC+AGG + tig0030416:24520-24539 Msa1443300:CDS 45.0%
!! CTTCTAAGGTAGCCTTGAAG+AGG + tig0030416:24576-24595 Msa1443300:CDS 45.0%
ATGACCGTAGAGGGAGATAA+TGG + tig0030416:24659-24678 Msa1443300:CDS 45.0%
CTCTCCATTATCTCCCTCTA+CGG - tig0030416:24666-24685 None:intergenic 45.0%
AGTTCCGGGGTAACAACAAA+CGG - tig0030416:24734-24753 None:intergenic 45.0%
AACAGGGCTATGTCACAGTT+AGG + tig0030416:24980-24999 Msa1443300:CDS 45.0%
!!! GTCTATGTGCTTTTCGGGTT+GGG + tig0030416:25002-25021 Msa1443300:CDS 45.0%
CCAGAACAGGTACTAAATCC+CGG + tig0030416:25130-25149 Msa1443300:intron 45.0%
TGTTGTGGTCAAGTGCATAC+CGG + tig0030416:25201-25220 Msa1443300:intron 45.0%
TTTCATCTTGTTACTGGGGG+AGG + tig0030416:25539-25558 Msa1443300:intron 45.0%
TTCATCTTGTTACTGGGGGA+GGG + tig0030416:25540-25559 Msa1443300:intron 45.0%
! TTGCCATTGGTAGTTCGGTT+TGG + tig0030416:25711-25730 Msa1443300:intron 45.0%
! TACGGCAAAAGTTGCCGATT+AGG - tig0030416:25996-26015 None:intergenic 45.0%
GATTAAACCCTCACATGACC+CGG - tig0030416:26029-26048 None:intergenic 45.0%
TCTTACATCTGCTATGCTGC+TGG + tig0030416:26158-26177 Msa1443300:CDS 45.0%
ACATGATCCCTGACAGTTTC+AGG - tig0030416:26291-26310 None:intergenic 45.0%
ATCATGTTATGGCTGCCACA+AGG + tig0030416:26304-26323 Msa1443300:CDS 45.0%
TCATGTTATGGCTGCCACAA+GGG + tig0030416:26305-26324 Msa1443300:CDS 45.0%
!! GTCCTTCAGCATTTCTAGCA+CGG - tig0030416:26412-26431 None:intergenic 45.0%
!! AAATCAAGGAAGAGGCGCTT+AGG + tig0030416:26433-26452 Msa1443300:CDS 45.0%
CGGAAAATAATGCACCCAGT+TGG - tig0030416:26603-26622 None:intergenic 45.0%
AGAGCTACAGAAGCAAGGTT+AGG + tig0030416:26702-26721 Msa1443300:CDS 45.0%
!! GCCTTGCCTTGTTTGAGAAT+AGG - tig0030416:26838-26857 None:intergenic 45.0%
GCATTATCGTTCAGTCAAGC+TGG + tig0030416:26888-26907 Msa1443300:CDS 45.0%
TTATCGTTCAGTCAAGCTGG+TGG + tig0030416:26891-26910 Msa1443300:CDS 45.0%
TATCGTTCAGTCAAGCTGGT+GGG + tig0030416:26892-26911 Msa1443300:CDS 45.0%
! CTATTCTAGAGGACGAGGAA+CGG + tig0030416:26923-26942 Msa1443300:CDS 45.0%
! TATTCTAGAGGACGAGGAAC+GGG + tig0030416:26924-26943 Msa1443300:CDS 45.0%
AGAATTCAGGGAGGACTCAA+GGG + tig0030416:26961-26980 Msa1443300:CDS 45.0%
TCAAGGGGGTTCTACTTTGA+GGG + tig0030416:26977-26996 Msa1443300:CDS 45.0%
ACATTGGGAATTTGGGGAAG+GGG - tig0030416:27233-27252 None:intergenic 45.0%
GCTGGGACTCATCTTCTTCT+TGG - tig0030416:23712-23731 None:intergenic 50.0%
! GTTGAAGGCTTTGGCATTGC+TGG - tig0030416:23730-23749 None:intergenic 50.0%
GGAAAAGGATGACGAGGATG+AGG + tig0030416:23833-23852 Msa1443300:CDS 50.0%
!! TGATGATGGCGATGCTCCTT+GGG + tig0030416:23968-23987 Msa1443300:CDS 50.0%
GTGTCCCATGTGATCTCACT+AGG - tig0030416:24047-24066 None:intergenic 50.0%
GGGAACTGGAAGGTTTGAAC+AGG + tig0030416:24112-24131 Msa1443300:CDS 50.0%
AGAATCTGCAGCTTCTGAGC+AGG - tig0030416:24176-24195 None:intergenic 50.0%
GATGTTAATCCAGGCCTCAG+TGG + tig0030416:24221-24240 Msa1443300:CDS 50.0%
TTATGGGCATATGCCCACTG+AGG - tig0030416:24238-24257 None:intergenic 50.0%
CGTGCAGCACCCAAACATAA+AGG + tig0030416:24307-24326 Msa1443300:CDS 50.0%
!! ATGACGGACCCATTCATGTC+TGG + tig0030416:24381-24400 Msa1443300:CDS 50.0%
! TGACGGACCCATTCATGTCT+GGG + tig0030416:24382-24401 Msa1443300:CDS 50.0%
ATTGGCTGAGATGACCGTAG+AGG + tig0030416:24649-24668 Msa1443300:CDS 50.0%
TTGGCTGAGATGACCGTAGA+GGG + tig0030416:24650-24669 Msa1443300:CDS 50.0%
!! TGCTCCGTTTGTTGTTACCC+CGG + tig0030416:24727-24746 Msa1443300:CDS 50.0%
TGTTGTTACCCCGGAACTTG+TGG + tig0030416:24736-24755 Msa1443300:CDS 50.0%
!!! CTGCTATTTTCCGGGAAGGT+GGG - tig0030416:24770-24789 None:intergenic 50.0%
!!! GGTCTATGTGCTTTTCGGGT+TGG + tig0030416:25001-25020 Msa1443300:CDS 50.0%
! TTATTCTGGTGGACGGGTGA+AGG + tig0030416:25060-25079 Msa1443300:CDS 50.0%
GTGAAGGAATTGCTTGCGCA+AGG + tig0030416:25076-25095 Msa1443300:CDS 50.0%
CCGGGATTTAGTACCTGTTC+TGG - tig0030416:25133-25152 None:intergenic 50.0%
TCATCTTGTTACTGGGGGAG+GGG + tig0030416:25541-25560 Msa1443300:intron 50.0%
TGGCCAAACCGAACTACCAA+TGG - tig0030416:25717-25736 None:intergenic 50.0%
TCTATCTACCGGGTCATGTG+AGG + tig0030416:26018-26037 Msa1443300:intron 50.0%
CTATCTACCGGGTCATGTGA+GGG + tig0030416:26019-26038 Msa1443300:intron 50.0%
TACATCTGCTATGCTGCTGG+AGG + tig0030416:26161-26180 Msa1443300:CDS 50.0%
TGAACATTGGCCGCCATGTT+GGG - tig0030416:26189-26208 None:intergenic 50.0%
ATGAACATTGGCCGCCATGT+TGG - tig0030416:26190-26209 None:intergenic 50.0%
GAATTTCCGACGCTTGCTTG+AGG + tig0030416:26236-26255 Msa1443300:CDS 50.0%
TGATCCCTGACAGTTTCAGG+AGG - tig0030416:26288-26307 None:intergenic 50.0%
ATGAGGAGCTTCATGCAAGC+TGG + tig0030416:26571-26590 Msa1443300:CDS 50.0%
TGAGGAGCTTCATGCAAGCT+GGG + tig0030416:26572-26591 Msa1443300:CDS 50.0%
! TGTTGAACACTCAAGGGTGC+AGG + tig0030416:26626-26645 Msa1443300:CDS 50.0%
GCTACAGAAGCAAGGTTAGG+CGG + tig0030416:26705-26724 Msa1443300:CDS 50.0%
TCTCAAACAAGGCAAGGCAG+CGG + tig0030416:26840-26859 Msa1443300:CDS 50.0%
GAGGCGGCTATCAGAATTCA+GGG + tig0030416:26949-26968 Msa1443300:CDS 50.0%
CAGAATTCAGGGAGGACTCA+AGG + tig0030416:26960-26979 Msa1443300:CDS 50.0%
GAATTCAGGGAGGACTCAAG+GGG + tig0030416:26962-26981 Msa1443300:CDS 50.0%
AATTCAGGGAGGACTCAAGG+GGG + tig0030416:26963-26982 Msa1443300:CDS 50.0%
CTCAAGGGGGTTCTACTTTG+AGG + tig0030416:26976-26995 Msa1443300:CDS 50.0%
CAAGGGGGTTCTACTTTGAG+GGG + tig0030416:26978-26997 Msa1443300:CDS 50.0%
!! TACCCGCATGGTTAGCCTTA+GGG + tig0030416:27019-27038 Msa1443300:CDS 50.0%
CATTGGGAATTTGGGGAAGG+GGG - tig0030416:27232-27251 None:intergenic 50.0%
GGGGCAGGTTCAGTATCACT+AGG - tig0030416:23375-23394 None:intergenic 55.0%
TAGGGAGAGTCCTGAGAGTG+AGG + tig0030416:23809-23828 Msa1443300:CDS 55.0%
AGGGAGAGTCCTGAGAGTGA+GGG + tig0030416:23810-23829 Msa1443300:CDS 55.0%
TCCTGAGAGTGAGGGGGAAA+AGG + tig0030416:23818-23837 Msa1443300:CDS 55.0%
! TCCTTTTCCCCCTCACTCTC+AGG - tig0030416:23822-23841 None:intergenic 55.0%
TGAGGGGGAAAAGGATGACG+AGG + tig0030416:23827-23846 Msa1443300:CDS 55.0%
ACCTGATCAGCTCAGGAAGC+CGG + tig0030416:23893-23912 Msa1443300:CDS 55.0%
!! CTTGGTAATGACAGGCCTCC+TGG + tig0030416:23945-23964 Msa1443300:CDS 55.0%
!! GTGATGATGGCGATGCTCCT+TGG + tig0030416:23967-23986 Msa1443300:CDS 55.0%
GACGGACCCATTCATGTCTG+GGG + tig0030416:24383-24402 Msa1443300:CDS 55.0%
GGGGTAACAACAAACGGAGC+AGG - tig0030416:24728-24747 None:intergenic 55.0%
!!! CCTGCTATTTTCCGGGAAGG+TGG - tig0030416:24771-24790 None:intergenic 55.0%
CCACCTTCCCGGAAAATAGC+AGG + tig0030416:24768-24787 Msa1443300:CDS 55.0%
!!! GGTCCTGCTATTTTCCGGGA+AGG - tig0030416:24774-24793 None:intergenic 55.0%
!!! ATGTGCTTTTCGGGTTGGGC+TGG + tig0030416:25006-25025 Msa1443300:CDS 55.0%
CATCTTGTTACTGGGGGAGG+GGG + tig0030416:25542-25561 Msa1443300:intron 55.0%
ATAGAGCATGAGGGGAAGCG+TGG + tig0030416:25651-25670 Msa1443300:intron 55.0%
CACTGACCTCAAGCAAGCGT+CGG - tig0030416:26245-26264 None:intergenic 55.0%
GGGTCCTCCTGAAACTGTCA+GGG + tig0030416:26281-26300 Msa1443300:CDS 55.0%
CGCCGTGCTAGAAATGCTGA+AGG + tig0030416:26407-26426 Msa1443300:CDS 55.0%
CAAGCTGGGATCAGCCAACT+GGG + tig0030416:26586-26605 Msa1443300:CDS 55.0%
! ACACTCAAGGGTGCAGGCTT+TGG + tig0030416:26632-26651 Msa1443300:CDS 55.0%
ACAGAAGCAAGGTTAGGCGG+CGG + tig0030416:26708-26727 Msa1443300:CDS 55.0%
TGCCTCCAAGGCGAAGAGAT+GGG + tig0030416:26742-26761 Msa1443300:CDS 55.0%
!! GGTGGTAGTGGAACGTCTTC+AGG + tig0030416:26792-26811 Msa1443300:CDS 55.0%
!! GGTAGTGGAACGTCTTCAGG+TGG + tig0030416:26795-26814 Msa1443300:CDS 55.0%
TACGGGATACGGTGGAGGAA+GGG + tig0030416:26866-26885 Msa1443300:CDS 55.0%
TTCAGTCAAGCTGGTGGGAG+TGG + tig0030416:26897-26916 Msa1443300:CDS 55.0%
GGAGGCGGCTATCAGAATTC+AGG + tig0030416:26948-26967 Msa1443300:CDS 55.0%
GCGGCTATCAGAATTCAGGG+AGG + tig0030416:26952-26971 Msa1443300:CDS 55.0%
! TCTACTTTGAGGGGACCCCA+CGG + tig0030416:26987-27006 Msa1443300:CDS 55.0%
!! CGGGTAGAAGTATCTCCGTG+GGG - tig0030416:27005-27024 None:intergenic 55.0%
!! GCGGGTAGAAGTATCTCCGT+GGG - tig0030416:27006-27025 None:intergenic 55.0%
!! TGCGGGTAGAAGTATCTCCG+TGG - tig0030416:27007-27026 None:intergenic 55.0%
CGGAGATACTTCTACCCGCA+TGG + tig0030416:27007-27026 Msa1443300:CDS 55.0%
!! CTACCCGCATGGTTAGCCTT+AGG + tig0030416:27018-27037 Msa1443300:CDS 55.0%
!! ACCCGCATGGTTAGCCTTAG+GGG + tig0030416:27020-27039 Msa1443300:CDS 55.0%
TCCCCTAAGGCTAACCATGC+GGG - tig0030416:27024-27043 None:intergenic 55.0%
CTCCCCTAAGGCTAACCATG+CGG - tig0030416:27025-27044 None:intergenic 55.0%
GTCAAGCACGAACTCCCCTA+AGG - tig0030416:27037-27056 None:intergenic 55.0%
CCTGCCCCAACCGATCCAAA+CGG + tig0030416:23387-23406 Msa1443300:CDS 60.0%
GGGAGAGTCCTGAGAGTGAG+GGG + tig0030416:23811-23830 Msa1443300:CDS 60.0%
GGAGAGTCCTGAGAGTGAGG+GGG + tig0030416:23812-23831 Msa1443300:CDS 60.0%
TCCGGCTTCCTGAGCTGATC+AGG - tig0030416:23897-23916 None:intergenic 60.0%
TCAGAATCCGACACGGGCTC+CGG - tig0030416:23915-23934 None:intergenic 60.0%
! GACAGGCCTCCTGGTGATGA+TGG + tig0030416:23954-23973 Msa1443300:CDS 60.0%
GCATCGCCATCATCACCAGG+AGG - tig0030416:23963-23982 None:intergenic 60.0%
!! GGAGCATCGCCATCATCACC+AGG - tig0030416:23966-23985 None:intergenic 60.0%
! AGATTCTGGAAGCCAGGGGC+AGG + tig0030416:24087-24106 Msa1443300:CDS 60.0%
TTACCCCGGAACTTGTGGCG+CGG + tig0030416:24741-24760 Msa1443300:CDS 60.0%
TTTCCGCGCCACAAGTTCCG+GGG - tig0030416:24747-24766 None:intergenic 60.0%
GTTTCCGCGCCACAAGTTCC+GGG - tig0030416:24748-24767 None:intergenic 60.0%
GGTTTCCGCGCCACAAGTTC+CGG - tig0030416:24749-24768 None:intergenic 60.0%
!! GGGCTGGTTTCTGAAGCGCA+TGG + tig0030416:25022-25041 Msa1443300:CDS 60.0%
GCTGCTGGAGGTTCCCAACA+TGG + tig0030416:26173-26192 Msa1443300:CDS 60.0%
GCTGGAGGTTCCCAACATGG+CGG + tig0030416:26176-26195 Msa1443300:CDS 60.0%
CGGGTCCTCCTGAAACTGTC+AGG + tig0030416:26280-26299 Msa1443300:CDS 60.0%
GCAAGCTGGGATCAGCCAAC+TGG + tig0030416:26585-26604 Msa1443300:CDS 60.0%
AAGCAAGGTTAGGCGGCGGT+GGG + tig0030416:26712-26731 Msa1443300:CDS 60.0%
!! GTGGGTTGGATCTGCCTCCA+AGG + tig0030416:26730-26749 Msa1443300:CDS 60.0%
CTGCCTCCAAGGCGAAGAGA+TGG + tig0030416:26741-26760 Msa1443300:CDS 60.0%
TGCCCATCTCTTCGCCTTGG+AGG - tig0030416:26747-26766 None:intergenic 60.0%
TCCAAGGCGAAGAGATGGGC+AGG + tig0030416:26746-26765 Msa1443300:CDS 60.0%
TCCTGCCCATCTCTTCGCCT+TGG - tig0030416:26750-26769 None:intergenic 60.0%
GATTATGCCGCTGCAGCTGC+TGG + tig0030416:26768-26787 Msa1443300:CDS 60.0%
GTGGAACGTCTTCAGGTGGC+AGG + tig0030416:26799-26818 Msa1443300:CDS 60.0%
GAACGTCTTCAGGTGGCAGG+TGG + tig0030416:26802-26821 Msa1443300:CDS 60.0%
AAGGCAAGGCAGCGGACGTA+CGG + tig0030416:26848-26867 Msa1443300:CDS 60.0%
GTACGGGATACGGTGGAGGA+AGG + tig0030416:26865-26884 Msa1443300:CDS 60.0%
AGTCAAGCTGGTGGGAGTGG+CGG + tig0030416:26900-26919 Msa1443300:CDS 60.0%
GGGAGTGGCGGCTATTCTAG+AGG + tig0030416:26912-26931 Msa1443300:CDS 60.0%
! GGCGGCTATTCTAGAGGACG+AGG + tig0030416:26918-26937 Msa1443300:CDS 60.0%
TCTAGAGGACGAGGAACGGG+TGG + tig0030416:26927-26946 Msa1443300:CDS 60.0%
CCGTTTGGATCGGTTGGGGC+AGG - tig0030416:23390-23409 None:intergenic 65.0%
TCTGGAAGCCAGGGGCAGGA+AGG + tig0030416:24091-24110 Msa1443300:CDS 65.0%
CTGGAAGCCAGGGGCAGGAA+GGG + tig0030416:24092-24111 Msa1443300:CDS 65.0%
TCCAGTTCCCTTCCTGCCCC+TGG - tig0030416:24102-24121 None:intergenic 65.0%
GGGGCAGGAAGGGAACTGGA+AGG + tig0030416:24102-24121 Msa1443300:CDS 65.0%
GGCATATGCCCACTGAGGCC+TGG - tig0030416:24233-24252 None:intergenic 65.0%
GAAGCAAGGTTAGGCGGCGG+TGG + tig0030416:26711-26730 Msa1443300:CDS 65.0%
AAGGTTAGGCGGCGGTGGGT+TGG + tig0030416:26716-26735 Msa1443300:CDS 65.0%
TATGCCGCTGCAGCTGCTGG+TGG + tig0030416:26771-26790 Msa1443300:CDS 65.0%
ACCACCACCAGCAGCTGCAG+CGG - tig0030416:26778-26797 None:intergenic 65.0%
!! GCAGCTGCTGGTGGTGGTAG+TGG + tig0030416:26780-26799 Msa1443300:CDS 65.0%
AGGCAAGGCAGCGGACGTAC+GGG + tig0030416:26849-26868 Msa1443300:CDS 65.0%
GGCAGCGGACGTACGGGATA+CGG + tig0030416:26855-26874 Msa1443300:CDS 65.0%
AGCGGACGTACGGGATACGG+TGG + tig0030416:26858-26877 Msa1443300:CDS 65.0%
GGACGTACGGGATACGGTGG+AGG + tig0030416:26861-26880 Msa1443300:CDS 65.0%
AGAGGACGAGGAACGGGTGG+AGG + tig0030416:26930-26949 Msa1443300:CDS 65.0%
CAGGAAGCCGGAGCCCGTGT+CGG + tig0030416:23905-23924 Msa1443300:CDS 70.0%
GCCAGGGGCAGGAAGGGAAC+TGG + tig0030416:24098-24117 Msa1443300:CDS 70.0%
GGCGCGGAAACCCACCTTCC+CGG + tig0030416:24757-24776 Msa1443300:CDS 70.0%
GGACGAGGAACGGGTGGAGG+CGG + tig0030416:26933-26952 Msa1443300:CDS 70.0%
GCCGCTGCAGCTGCTGGTGG+TGG + tig0030416:26774-26793 Msa1443300:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0030416 gene 22936 27330 22936 ID=Msa1443300;Name=Msa1443300
tig0030416 mRNA 22936 27330 22936 ID=Msa1443300-mRNA-1;Parent=Msa1443300;Name=Msa1443300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=117|1|1|1|0.5|0.4|5|249|936
tig0030416 exon 22936 23044 22936 ID=Msa1443300-mRNA-1:exon:13817;Parent=Msa1443300-mRNA-1
tig0030416 exon 23194 23225 23194 ID=Msa1443300-mRNA-1:exon:13818;Parent=Msa1443300-mRNA-1
tig0030416 exon 23321 25138 23321 ID=Msa1443300-mRNA-1:exon:13819;Parent=Msa1443300-mRNA-1
tig0030416 exon 26087 27103 26087 ID=Msa1443300-mRNA-1:exon:13820;Parent=Msa1443300-mRNA-1
tig0030416 exon 27130 27330 27130 ID=Msa1443300-mRNA-1:exon:13821;Parent=Msa1443300-mRNA-1
tig0030416 five_prime_UTR 22936 23044 22936 ID=Msa1443300-mRNA-1:five_prime_utr;Parent=Msa1443300-mRNA-1
tig0030416 five_prime_UTR 23194 23201 23194 ID=Msa1443300-mRNA-1:five_prime_utr;Parent=Msa1443300-mRNA-1
tig0030416 CDS 23202 23225 23202 ID=Msa1443300-mRNA-1:cds;Parent=Msa1443300-mRNA-1
tig0030416 CDS 23321 25138 23321 ID=Msa1443300-mRNA-1:cds;Parent=Msa1443300-mRNA-1
tig0030416 CDS 26087 27055 26087 ID=Msa1443300-mRNA-1:cds;Parent=Msa1443300-mRNA-1
tig0030416 three_prime_UTR 27056 27103 27056 ID=Msa1443300-mRNA-1:three_prime_utr;Parent=Msa1443300-mRNA-1
tig0030416 three_prime_UTR 27130 27330 27130 ID=Msa1443300-mRNA-1:three_prime_utr;Parent=Msa1443300-mRNA-1
Gene Sequence

>Msa1443300

ATGACTTCCAGATTCTTTTACCAGGGTGGTGATCATAGTGATACCGACGATGAACCCACTGATATTGATGATGAACCTAGTGATACTGAACCTGCCCCAACCGATCCAAACGGTAAAAGCAAATACTACGTTGATGGTAATGCTGATGACAGTGACGATGATGATGGCCAAAAGCGTGTTGTTAAATCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTCGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCTAATCTTTACATCAAGGCTCTTGTTATGCTTGAAGATTTCCTTGCTCAGGCTTCTGCTAATAAGGATGCCAAGAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGTAGGGAGAGTCCTGAGAGTGAGGGGGAAAAGGATGACGAGGATGAGGACTCTGACGAATACGAGACCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCCGTGTCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAACTAGATGAGAATGAAACTAAGAAAGGGGATGACTATGACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCGCATGAGGTTTATGAAGCAACGAGAAAATTGGCTGAGATGACCGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATACAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTCGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAGGTTCCCAACATGGCGGCCAATGTTCATGATGCAAAGCGTAAGATCATCAGTAAGAATTTCCGACGCTTGCTTGAGGTCAGTGAGAAACAAACATTCACGGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGATGTGTGGAAATTTGTGAAAAATCGAGACGCCGTGCTAGAAATGCTGAAGGACAAAATCAAGGAAGAGGCGCTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTGAGCGTGGTTCAGCTCACAAATTTTTTCGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTATTTTCCGAAATGTTGAACACTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATTCTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGAAGAGATGGGCAGGATTATGCCGCTGCAGCTGCTGGTGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGCGGACGTACGGGATACGGTGGAGGAAGGGCATTATCGTTCAGTCAAGCTGGTGGGAGTGGCGGCTATTCTAGAGGACGAGGAACGGGTGGAGGCGGCTATCAGAATTCAGGGAGGACTCAAGGGGGTTCTACTTTGAGGGGACCCCACGGAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA
Protein sequence

>Msa1443300

MTSRFFYQGGDHSDTDDEPTDIDDEPSDTEPAPTDPNGKSKYYVDGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDDEDEDSDEYETDDEIIEPDQLRKPEPVSDSETSELGNDRPPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYDGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEELKGFEDTRIPAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYDSLSVVQLTNFFDLSLPRVHSIVSRMMINEELHASWDQPTGCIIFRNVEHSRVQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTGGGGYQNSGRTQGGSTLRGPHGDTSTRMVSLRGVRA*