Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531230 | XP_013454739.1 | 93.973 | 448 | 16 | 2 | 7 | 454 | 1 | 437 | 0.0 | 824 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531230 | sp|Q9C829|NU50A_ARATH | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.09e-103 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531230 | A0A072USC3 | 93.973 | 448 | 16 | 2 | 7 | 454 | 1 | 437 | 0.0 | 824 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072420 | Msa0531230 | 0.811478 | 6.861606e-51 | -8.615850e-47 |
| Msa0120880 | Msa0531230 | 0.828140 | 1.060891e-54 | -8.615850e-47 |
| Msa0149440 | Msa0531230 | 0.811646 | 6.309835e-51 | -8.615850e-47 |
| Msa0156760 | Msa0531230 | 0.813036 | 3.135722e-51 | -8.615850e-47 |
| Msa0189700 | Msa0531230 | 0.814184 | 1.753604e-51 | -8.615850e-47 |
| Msa0232010 | Msa0531230 | 0.815267 | 1.009234e-51 | -8.615850e-47 |
| Msa0232080 | Msa0531230 | 0.813956 | 1.968931e-51 | -8.615850e-47 |
| Msa0437020 | Msa0531230 | 0.851967 | 6.283453e-61 | -8.615850e-47 |
| Msa0258390 | Msa0531230 | 0.801712 | 7.910057e-49 | -8.615850e-47 |
| Msa0343500 | Msa0531230 | 0.827821 | 1.265956e-54 | -8.615850e-47 |
| Msa0357900 | Msa0531230 | 0.801008 | 1.102443e-48 | -8.615850e-47 |
| Msa0531230 | Msa0539410 | 0.805443 | 1.331410e-49 | -8.615850e-47 |
| Msa0531230 | Msa0549450 | 0.801345 | 9.409448e-49 | -8.615850e-47 |
| Msa0531230 | Msa0578140 | 0.862636 | 4.404128e-64 | -8.615850e-47 |
| Msa0531230 | Msa0581110 | 0.805262 | 1.453533e-49 | -8.615850e-47 |
| Msa0531230 | Msa0581280 | 0.812978 | 3.229233e-51 | -8.615850e-47 |
| Msa0531230 | Msa0595170 | 0.812642 | 3.825739e-51 | -8.615850e-47 |
| Msa0531230 | Msa0626630 | 0.845481 | 3.953654e-59 | -8.615850e-47 |
| Msa0531230 | Msa0626950 | 0.823483 | 1.351703e-53 | -8.615850e-47 |
| Msa0531230 | Msa0627380 | 0.832000 | 1.213354e-55 | -8.615850e-47 |
| Msa0531230 | Msa0628410 | 0.886355 | 3.674805e-72 | -8.615850e-47 |
| Msa0531230 | Msa0634890 | 0.809076 | 2.261955e-50 | -8.615850e-47 |
| Msa0531230 | Msa0664750 | 0.848116 | 7.524056e-60 | -8.615850e-47 |
| Msa0531230 | Msa0665100 | 0.868026 | 8.866274e-66 | -8.615850e-47 |
| Msa0531230 | Msa0689440 | 0.802998 | 4.298735e-49 | -8.615850e-47 |
| Msa0531230 | Msa0881290 | 0.811552 | 6.611187e-51 | -8.615850e-47 |
| Msa0531230 | Msa0958000 | 0.810733 | 9.954993e-51 | -8.615850e-47 |
| Msa0531230 | Msa1123770 | 0.865049 | 7.825181e-65 | -8.615850e-47 |
| Msa0531230 | Msa1126830 | 0.801410 | 9.123282e-49 | -8.615850e-47 |
| Msa0531230 | Msa1128280 | 0.800870 | 1.176682e-48 | -8.615850e-47 |
| Msa0531230 | Msa1148910 | 0.806497 | 7.993347e-50 | -8.615850e-47 |
| Msa0531230 | Msa1169910 | 0.863566 | 2.272681e-64 | -8.615850e-47 |
| Msa0531230 | Msa1209200 | 0.811545 | 6.636843e-51 | -8.615850e-47 |
| Msa0531230 | Msa1315890 | 0.803826 | 2.896562e-49 | -8.615850e-47 |
| Msa0531230 | Msa1329730 | 0.816074 | 6.669981e-52 | -8.615850e-47 |
| Msa0531230 | Msa1329750 | 0.802217 | 6.228683e-49 | -8.615850e-47 |
| Msa0531230 | Msa1332590 | 0.803692 | 3.087423e-49 | -8.615850e-47 |
| Msa0531230 | Msa1385720 | 0.866105 | 3.636901e-65 | -8.615850e-47 |
| Msa0531230 | Msa1411970 | 0.932571 | 6.971512e-95 | -8.615850e-47 |
| Msa0531230 | Msa1434090 | 0.867035 | 1.840430e-65 | -8.615850e-47 |
| Msa0531230 | Msa1434950 | 0.824738 | 6.860691e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531230 | MtrunA17_Chr4g0004231 | 93.973 | 448 | 16 | 2 | 7 | 454 | 1 | 437 | 0.0 | 824 |
| Msa0531230 | MtrunA17_Chr1g0210671 | 76.596 | 94 | 20 | 1 | 1 | 92 | 19 | 112 | 1.51e-32 | 122 |
| Msa0531230 | MtrunA17_Chr3g0089741 | 72.917 | 48 | 13 | 0 | 7 | 54 | 1 | 48 | 1.27e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531230 | AT1G52380.3 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa0531230 | AT1G52380.2 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa0531230 | AT1G52380.1 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa0531230 | AT1G52380.4 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa0531230 | AT3G15970.2 | 42.562 | 484 | 221 | 14 | 7 | 453 | 1 | 464 | 1.11e-91 | 286 |
| Msa0531230 | AT3G15970.1 | 42.562 | 484 | 221 | 14 | 7 | 453 | 1 | 464 | 1.11e-91 | 286 |
Find 126 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACAGGTCTTGCTGGGTC+TGG | 0.282996 | 4_1:-5435054 | Msa0531230:CDS |
| ATAGAAGTTCTTTCTGTAAT+GGG | 0.291390 | 4_1:-5435801 | Msa0531230:intron |
| TGAAATGAAGCTCACAAATA+TGG | 0.293632 | 4_1:-5434641 | Msa0531230:CDS |
| ATATTTGTGAGCTTCATTTC+AGG | 0.313432 | 4_1:+5434643 | None:intergenic |
| CCGAGTCCTTATGAGGTCTA+AGG | 0.316914 | 4_1:-5434701 | Msa0531230:CDS |
| TTATCTAACGCTGGAAGTTC+TGG | 0.321462 | 4_1:-5434919 | Msa0531230:CDS |
| TTGAAACCTGACCAGCCTTT+AGG | 0.324636 | 4_1:-5434949 | Msa0531230:CDS |
| TAAGAAGGAAGTTGCTGATA+AGG | 0.332879 | 4_1:-5435310 | Msa0531230:CDS |
| TGTTACTTTGACCATTCTTC+TGG | 0.332895 | 4_1:+5435635 | None:intergenic |
| AACGCTGGAAGTTCTGGTTT+TGG | 0.337784 | 4_1:-5434913 | Msa0531230:CDS |
| AATGCCTTCACAGGTCTTGC+TGG | 0.338943 | 4_1:-5435060 | Msa0531230:CDS |
| CCTGACCAGCCTTTAGGTCT+TGG | 0.361060 | 4_1:-5434943 | Msa0531230:CDS |
| TCATCTTCCTCGTCGTCAAT+AGG | 0.362423 | 4_1:+5435711 | None:intergenic |
| ACCTCAGGAGCTTTGCTCTC+TGG | 0.367425 | 4_1:+5435474 | None:intergenic |
| TGTAGACCCGAAGGAAAATA+AGG | 0.369166 | 4_1:+5435020 | None:intergenic |
| TCTTCATCCTTAGCTTTCTC+TGG | 0.371345 | 4_1:+5435507 | None:intergenic |
| AACAAATGATGGGTCTACTT+TGG | 0.384601 | 4_1:-5434998 | Msa0531230:CDS |
| CGTATACCAGCGAAAGGGTT+TGG | 0.386213 | 4_1:+5435588 | None:intergenic |
| GAAGCCTTGGGAGAGTTCTC+TGG | 0.387453 | 4_1:+5434469 | None:intergenic |
| AATAGAAGTTCTTTCTGTAA+TGG | 0.388348 | 4_1:-5435802 | Msa0531230:intron |
| TCTACTTTGGGTAGTGGGTC+CGG | 0.396921 | 4_1:-5434985 | Msa0531230:CDS |
| TCTTGAAAGTCCCGGCTTCA+AGG | 0.403876 | 4_1:+5435682 | None:intergenic |
| TTCCTGCAGTGTTTCAGTCT+TGG | 0.406473 | 4_1:+5434867 | None:intergenic |
| GAGCGACAGTGACAACTCTA+AGG | 0.408430 | 4_1:-5435379 | Msa0531230:CDS |
| AATTTCCCTTAGACCTCATA+AGG | 0.415992 | 4_1:+5434695 | None:intergenic |
| AGCTCAAACATCAGAAGCCT+TGG | 0.417787 | 4_1:+5434456 | None:intergenic |
| CCTTACAGTCGTCAAAGAAA+AGG | 0.420646 | 4_1:-5435764 | Msa0531230:CDS |
| CCAAGACCTAAAGGCTGGTC+AGG | 0.423398 | 4_1:+5434943 | None:intergenic |
| ACAAATGATGGGTCTACTTT+GGG | 0.423993 | 4_1:-5434997 | Msa0531230:CDS |
| GGTTGGAAGGAACGTGGAAA+GGG | 0.429315 | 4_1:-5434766 | Msa0531230:CDS |
| TTTGCATTGAAGTTCAAAGA+TGG | 0.435158 | 4_1:-5434562 | Msa0531230:CDS |
| ACTGAATCCACTGCCAAGTC+TGG | 0.437172 | 4_1:-5435552 | Msa0531230:CDS |
| TATTTGTGAGCTTCATTTCA+GGG | 0.440319 | 4_1:+5434644 | None:intergenic |
| TTCGGGTCTACAACAAATGA+TGG | 0.442733 | 4_1:-5435009 | Msa0531230:CDS |
| CCTTAGACCTCATAAGGACT+CGG | 0.444298 | 4_1:+5434701 | None:intergenic |
| GAGCAAAGCTCCTGAGGTTG+AGG | 0.446588 | 4_1:-5435469 | Msa0531230:CDS |
| AGGCAAGGAGCTTGCGGAGA+AGG | 0.452508 | 4_1:-5435403 | Msa0531230:CDS |
| GGTAGATAATGAACAGAGTA+AGG | 0.452713 | 4_1:-5435358 | Msa0531230:CDS |
| TCGTCAAAGAAAAGGGCTGC+TGG | 0.453932 | 4_1:-5435756 | Msa0531230:CDS |
| AGTAAGTGAAAGCAAGGATA+AGG | 0.460546 | 4_1:-5435187 | Msa0531230:CDS |
| GATTGAAAATGAGGATAAGA+AGG | 0.464936 | 4_1:-5435325 | Msa0531230:CDS |
| CAGGAAGTCGTTGTTGAAAC+CGG | 0.466180 | 4_1:-5434850 | Msa0531230:CDS |
| GCTCACAAATATGGAGAAGA+AGG | 0.474042 | 4_1:-5434632 | Msa0531230:CDS |
| ATGACGCTGCCCTTGAAGCC+GGG | 0.474337 | 4_1:-5435692 | Msa0531230:CDS |
| GATGACGCTGCCCTTGAAGC+CGG | 0.476093 | 4_1:-5435693 | Msa0531230:CDS |
| ATGGGTCTACTTTGGGTAGT+GGG | 0.480263 | 4_1:-5434990 | Msa0531230:CDS |
| ACTGGCTTTCTTGAAAGTCC+CGG | 0.480603 | 4_1:+5435674 | None:intergenic |
| AGTAGTAGCTTCACCAGACT+TGG | 0.481005 | 4_1:+5435539 | None:intergenic |
| GGTTGCAAGAACCTCCTCAC+TGG | 0.485123 | 4_1:+5435656 | None:intergenic |
| AAATAGTGAAAGCAAGGATA+AGG | 0.486758 | 4_1:-5435217 | Msa0531230:CDS |
| CCCTTCAGTGGCACATGCAA+AGG | 0.487875 | 4_1:+5434603 | None:intergenic |
| AGGTTGGAAGGAACGTGGAA+AGG | 0.496279 | 4_1:-5434767 | Msa0531230:CDS |
| CGTCGTCAATAGGAGTGTCT+CGG | 0.502212 | 4_1:+5435721 | None:intergenic |
| GCTGTTGAAATGATTTGAAA+GGG | 0.504844 | 4_1:+5435097 | None:intergenic |
| CTTACAGTCGTCAAAGAAAA+GGG | 0.505584 | 4_1:-5435763 | Msa0531230:CDS |
| GATGGGTCTACTTTGGGTAG+TGG | 0.506943 | 4_1:-5434991 | Msa0531230:CDS |
| TTGCATTGAAGTTCAAAGAT+GGG | 0.509535 | 4_1:-5434561 | Msa0531230:CDS |
| AGTCTTGAAATCCTCCACTA+TGG | 0.509950 | 4_1:+5434537 | None:intergenic |
| TTGGAGTAGATTTATTCTGT+TGG | 0.517375 | 4_1:+5435607 | None:intergenic |
| TTGAGTTTGCAGATGGAGGT+TGG | 0.519670 | 4_1:-5434783 | Msa0531230:CDS |
| TTAGATAAACCAAGACCTAA+AGG | 0.521590 | 4_1:+5434934 | None:intergenic |
| AGTAAGCGAAAGCAAAGATA+AGG | 0.521711 | 4_1:-5435157 | Msa0531230:CDS |
| TTGTTTGAGTTTGCAGATGG+AGG | 0.522768 | 4_1:-5434787 | Msa0531230:CDS |
| GTAGATTTGTCCTCAACCTC+AGG | 0.523191 | 4_1:+5435459 | None:intergenic |
| ATGCCTTCACAGGTCTTGCT+GGG | 0.525899 | 4_1:-5435059 | Msa0531230:CDS |
| TGGACGTAAGATTGAAAATG+AGG | 0.525984 | 4_1:-5435334 | Msa0531230:CDS |
| GTCGTCAATAGGAGTGTCTC+GGG | 0.531300 | 4_1:+5435722 | None:intergenic |
| GTGTTGTTTGAGTTTGCAGA+TGG | 0.533735 | 4_1:-5434790 | Msa0531230:CDS |
| CGGTGAAGAAAACGAGGAAG+TGG | 0.537379 | 4_1:-5434830 | Msa0531230:CDS |
| CTTGAAAGTCCCGGCTTCAA+GGG | 0.539539 | 4_1:+5435683 | None:intergenic |
| AGCTGTTGAAATGATTTGAA+AGG | 0.539560 | 4_1:+5435096 | None:intergenic |
| CTATCACAGCACACAAGGGT+GGG | 0.539717 | 4_1:-5434513 | Msa0531230:CDS |
| GTTTGCAGATGGAGGTTGGA+AGG | 0.542312 | 4_1:-5434779 | Msa0531230:CDS |
| GCTCAAACATCAGAAGCCTT+GGG | 0.542932 | 4_1:+5434457 | None:intergenic |
| GGTTCTTGCAACCAGAAGAA+TGG | 0.542934 | 4_1:-5435646 | Msa0531230:CDS |
| AGACAAAGTAAGTGAAAGCA+AGG | 0.543217 | 4_1:-5435193 | Msa0531230:CDS |
| GATAATGAACAGAGTAAGGA+TGG | 0.544320 | 4_1:-5435354 | Msa0531230:CDS |
| AAAGGGCCACCTTCAGCAGT+AGG | 0.547591 | 4_1:+5435114 | None:intergenic |
| AGCAATCAAAATGCCTTCAC+AGG | 0.548375 | 4_1:-5435069 | Msa0531230:CDS |
| ATAAACCAAGACCTAAAGGC+TGG | 0.555593 | 4_1:+5434938 | None:intergenic |
| AGCTTCACCAGACTTGGCAG+TGG | 0.560811 | 4_1:+5435545 | None:intergenic |
| AACTAGTGGAACAGAAAAGA+AGG | 0.562452 | 4_1:-5434725 | Msa0531230:CDS |
| GCCAGAGAGCAAAGCTCCTG+AGG | 0.563576 | 4_1:-5435475 | Msa0531230:CDS |
| TTCCAAGACTGAAACACTGC+AGG | 0.563759 | 4_1:-5434869 | Msa0531230:CDS |
| TAGAAGTTCTTTCTGTAATG+GGG | 0.563930 | 4_1:-5435800 | Msa0531230:CDS |
| GCAGTGGATTCAGTAGGAGC+AGG | 0.564389 | 4_1:+5435561 | None:intergenic |
| CGTCAAAGAAAAGGGCTGCT+GGG | 0.566029 | 4_1:-5435755 | Msa0531230:CDS |
| CGAGTCCTTATGAGGTCTAA+GGG | 0.566826 | 4_1:-5434700 | Msa0531230:CDS |
| CAATGCAGGCAAGGAGCTTG+CGG | 0.566828 | 4_1:-5435409 | Msa0531230:CDS |
| AAGACGGTCTTTCCCTTCAG+TGG | 0.567228 | 4_1:+5434591 | None:intergenic |
| TCTACTCCAAACCCTTTCGC+TGG | 0.571206 | 4_1:-5435594 | Msa0531230:CDS |
| AGAAGGCCCGAGTCCTTATG+AGG | 0.572817 | 4_1:-5434708 | Msa0531230:CDS |
| GGCAAGCGTATACCAGCGAA+AGG | 0.572904 | 4_1:+5435582 | None:intergenic |
| GACTGCTATCACAGCACACA+AGG | 0.572911 | 4_1:-5434518 | Msa0531230:CDS |
| CCTTTGCATGTGCCACTGAA+GGG | 0.575965 | 4_1:-5434603 | Msa0531230:CDS |
| GAACGGAAATAGTGAAAGCA+AGG | 0.577253 | 4_1:-5435223 | Msa0531230:CDS |
| ACCTTTGCATGTGCCACTGA+AGG | 0.579423 | 4_1:-5434604 | Msa0531230:CDS |
| AGACCCAGCAAGACCTGTGA+AGG | 0.582987 | 4_1:+5435056 | None:intergenic |
| GTTCAAAGATGGGTCCATAG+TGG | 0.583030 | 4_1:-5434551 | Msa0531230:CDS |
| GTGAAAGTGAATGTAACTAG+TGG | 0.595453 | 4_1:-5434739 | Msa0531230:CDS |
| TACTTCAAACAACGATGTTG+CGG | 0.596477 | 4_1:-5435439 | Msa0531230:CDS |
| GGTCTTGGTTTATCTAACGC+TGG | 0.598167 | 4_1:-5434928 | Msa0531230:CDS |
| AGTGACGAGCCTACTGCTGA+AGG | 0.599077 | 4_1:-5435123 | Msa0531230:CDS |
| CTTAGACCTCATAAGGACTC+GGG | 0.601169 | 4_1:+5434702 | None:intergenic |
| GGACAGAAACAATGCAGGCA+AGG | 0.604459 | 4_1:-5435418 | Msa0531230:CDS |
| ATCATTTGTTGTAGACCCGA+AGG | 0.607405 | 4_1:+5435011 | None:intergenic |
| TATCACAGCACACAAGGGTG+GGG | 0.607843 | 4_1:-5434512 | Msa0531230:CDS |
| TCAATGCAAATGTTGAAAGA+CGG | 0.609075 | 4_1:+5434575 | None:intergenic |
| GCTATCACAGCACACAAGGG+TGG | 0.614339 | 4_1:-5434514 | Msa0531230:CDS |
| TCGGGTCTACAACAAATGAT+GGG | 0.616965 | 4_1:-5435008 | Msa0531230:CDS |
| AGAAGTTCTTTCTGTAATGG+GGG | 0.619400 | 4_1:-5435799 | Msa0531230:CDS |
| GACGAGCCTACTGCTGAAGG+TGG | 0.621305 | 4_1:-5435120 | Msa0531230:CDS |
| GTTGCGGACAGAAACAATGC+AGG | 0.625399 | 4_1:-5435423 | Msa0531230:CDS |
| CTCACAAATATGGAGAAGAA+GGG | 0.630174 | 4_1:-5434631 | Msa0531230:CDS |
| GACTCCAGAGAACTCTCCCA+AGG | 0.630564 | 4_1:-5434473 | Msa0531230:CDS |
| AACGCAGCCAGAGAAAGCTA+AGG | 0.639096 | 4_1:-5435514 | Msa0531230:CDS |
| CAAAGATGGGTCCATAGTGG+AGG | 0.639977 | 4_1:-5434548 | Msa0531230:CDS |
| GCAAGCGTATACCAGCGAAA+GGG | 0.643938 | 4_1:+5435583 | None:intergenic |
| TTTCAAGAAAGCCAGTGAGG+AGG | 0.650952 | 4_1:-5435667 | Msa0531230:CDS |
| ACTGAGAACAGTGATAAGAA+CGG | 0.660347 | 4_1:-5435240 | Msa0531230:CDS |
| GACTTTCAAGAAAGCCAGTG+AGG | 0.667433 | 4_1:-5435670 | Msa0531230:CDS |
| GATGGAGGTTGGAAGGAACG+TGG | 0.668623 | 4_1:-5434772 | Msa0531230:CDS |
| GACTTGGCAGTGGATTCAGT+AGG | 0.688140 | 4_1:+5435555 | None:intergenic |
| TGAAACCGGTGAAGAAAACG+AGG | 0.705134 | 4_1:-5434836 | Msa0531230:CDS |
| ACTGCTATCACAGCACACAA+GGG | 0.723065 | 4_1:-5434517 | Msa0531230:CDS |
| AGACACTCCTATTGACGACG+AGG | 0.724010 | 4_1:-5435718 | Msa0531230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAATTATTATTATT+TGG | - | chr4_1:5434490-5434509 | Msa0531230:CDS | 0.0% |
| !! | AAAATAAATTATTATTATTT+GGG | - | chr4_1:5434491-5434510 | Msa0531230:CDS | 0.0% |
| !!! | ATGGATTTATTTTTAATAAA+CGG | - | chr4_1:5434575-5434594 | Msa0531230:CDS | 10.0% |
| !!! | TGAAATTTTATTTTAACATA+AGG | - | chr4_1:5434652-5434671 | Msa0531230:CDS | 10.0% |
| !!! | GAAATTTTATTTTAACATAA+GGG | - | chr4_1:5434653-5434672 | Msa0531230:CDS | 10.0% |
| !!! | TGATTATATTATCTAAAATA+AGG | + | chr4_1:5435372-5435391 | None:intergenic | 10.0% |
| !!! | TATTTTAGATAATATAATCA+CGG | - | chr4_1:5435372-5435391 | Msa0531230:CDS | 10.0% |
| !!! | CTAAAAAAGATTTTAAAAAT+AGG | - | chr4_1:5437109-5437128 | Msa0531230:intron | 10.0% |
| !!! | TTTTATAATTTGAAACGTAT+TGG | + | chr4_1:5435647-5435666 | None:intergenic | 15.0% |
| !!! | TAATTTTGAATTGATGATAA+CGG | - | chr4_1:5436328-5436347 | Msa0531230:intron | 15.0% |
| !! | CTTAACAAAATAAAAAAACT+TGG | + | chr4_1:5436685-5436704 | None:intergenic | 15.0% |
| !! | AATAGTATTATTCATGTAAT+TGG | + | chr4_1:5436872-5436891 | None:intergenic | 15.0% |
| !! | AATATAAGTTCTTTCTATAA+TGG | - | chr4_1:5437480-5437499 | Msa0531230:intron | 15.0% |
| !! | TTCAGTTAAGTTATTCAAAA+TGG | + | chr4_1:5434602-5434621 | None:intergenic | 20.0% |
| !! | TAACAGATTCAAAAATTGAA+GGG | + | chr4_1:5435033-5435052 | None:intergenic | 20.0% |
| !! | CTAATAATTTATCTGTGTTT+AGG | + | chr4_1:5435096-5435115 | None:intergenic | 20.0% |
| !! | AAATTTGACAGAAAACTAAT+TGG | - | chr4_1:5435169-5435188 | Msa0531230:CDS | 20.0% |
| !! | ATAGAAATACACATATCAAA+AGG | + | chr4_1:5435575-5435594 | None:intergenic | 20.0% |
| !! | AATGAAAAAGAAAGCTATAT+CGG | + | chr4_1:5435946-5435965 | None:intergenic | 20.0% |
| !! | TATCTATATAGAATGCTAAA+AGG | - | chr4_1:5435996-5436015 | Msa0531230:intron | 20.0% |
| !! | ATCTATATAGAATGCTAAAA+GGG | - | chr4_1:5435997-5436016 | Msa0531230:intron | 20.0% |
| !! | ATAAGTAGCTTATAACAATT+TGG | + | chr4_1:5436143-5436162 | None:intergenic | 20.0% |
| !! | ATTGTTATAAGCTACTTATA+AGG | - | chr4_1:5436144-5436163 | Msa0531230:intron | 20.0% |
| !! | TTGTTATAAGCTACTTATAA+GGG | - | chr4_1:5436145-5436164 | Msa0531230:intron | 20.0% |
| !! | TCAATTCAAAATTATGATAC+TGG | + | chr4_1:5436322-5436341 | None:intergenic | 20.0% |
| !!! | CATAATTTTATTAATCGAGA+TGG | - | chr4_1:5436352-5436371 | Msa0531230:intron | 20.0% |
| !!! | ATGACTTTTATTAGTTGATA+AGG | - | chr4_1:5436630-5436649 | Msa0531230:intron | 20.0% |
| !! | AGAAAAAGTTGAAAAATGTT+AGG | - | chr4_1:5437063-5437082 | Msa0531230:intron | 20.0% |
| !! | GAAAAAGTTGAAAAATGTTA+GGG | - | chr4_1:5437064-5437083 | Msa0531230:intron | 20.0% |
| !!! | GTTTATGTTTTTTGTTTCAA+AGG | - | chr4_1:5437343-5437362 | Msa0531230:intron | 20.0% |
| !! | AGCAAATATATAAATGTTGT+GGG | - | chr4_1:5437400-5437419 | Msa0531230:intron | 20.0% |
| !! | TGAAATTTGATAACAGTTTC+TGG | + | chr4_1:5435001-5435020 | None:intergenic | 25.0% |
| ! | GTAACAGATTCAAAAATTGA+AGG | + | chr4_1:5435034-5435053 | None:intergenic | 25.0% |
| !! | TTCTTTTCTACATTTCAATG+AGG | + | chr4_1:5435069-5435088 | None:intergenic | 25.0% |
| !! | AATTCTACCTAAGAGTTTTA+AGG | - | chr4_1:5435306-5435325 | Msa0531230:CDS | 25.0% |
| ! | AAGACGGATACTTTAATAAA+GGG | - | chr4_1:5435447-5435466 | Msa0531230:CDS | 25.0% |
| ! | AATGCAAAATTGCTCTATTT+AGG | + | chr4_1:5435511-5435530 | None:intergenic | 25.0% |
| !! | TAAATAGAGCAATTTTGCAT+TGG | - | chr4_1:5435510-5435529 | Msa0531230:CDS | 25.0% |
| !!! | TGAGATTTTTGGGTAAATTT+TGG | - | chr4_1:5436094-5436113 | Msa0531230:intron | 25.0% |
| ! | ATCTCATTAAAAACAAGAAC+TGG | + | chr4_1:5436188-5436207 | None:intergenic | 25.0% |
| ! | ATGAAACAATTTCAAAAGCT+AGG | + | chr4_1:5436257-5436276 | None:intergenic | 25.0% |
| ! | GTTGCTTATATGTATGAAAA+TGG | - | chr4_1:5436289-5436308 | Msa0531230:intron | 25.0% |
| !!! | GAATGTTTGCTGTATAAATT+TGG | - | chr4_1:5436403-5436422 | Msa0531230:intron | 25.0% |
| !! | TAAGATTGCTGTGTAAATTT+TGG | - | chr4_1:5436426-5436445 | Msa0531230:intron | 25.0% |
| !!! | ATCTTTTTTAGAGCATTTTG+AGG | + | chr4_1:5437100-5437119 | None:intergenic | 25.0% |
| ! | TTAATTAGAAGTTACCACTA+TGG | - | chr4_1:5437272-5437291 | Msa0531230:intron | 25.0% |
| ! | GAGCAAATATATAAATGTTG+TGG | - | chr4_1:5437399-5437418 | Msa0531230:intron | 25.0% |
| ! | ATAAGTTCTTTCTATAATGG+TGG | - | chr4_1:5437483-5437502 | Msa0531230:intron | 25.0% |
| ! | TGATGTTGTCAATATGATAT+TGG | - | chr4_1:5437674-5437693 | Msa0531230:intron | 25.0% |
| ! | GATGTTGTCAATATGATATT+GGG | - | chr4_1:5437675-5437694 | Msa0531230:intron | 25.0% |
| ! | GCTTCATATAGATACTAAAA+AGG | + | chr4_1:5437732-5437751 | None:intergenic | 25.0% |
| ! | AATAGAAGTTCTTTCTGTAA+TGG | - | chr4_1:5437865-5437884 | Msa0531230:intron | 25.0% |
| ! | ATAGAAGTTCTTTCTGTAAT+GGG | - | chr4_1:5437866-5437885 | Msa0531230:intron | 25.0% |
| !!! | TCAGTATTTTTTTCTTCTGT+AGG | + | chr4_1:5438412-5438431 | None:intergenic | 25.0% |
| ! | TTTCAATCCAAAAATAGAAC+CGG | + | chr4_1:5438704-5438723 | None:intergenic | 25.0% |
| TTGTTTGGTACAAGAAAGAA+AGG | + | chr4_1:5434730-5434749 | None:intergenic | 30.0% | |
| GAGAAATAAGGTAGATTTGA+TGG | + | chr4_1:5434754-5434773 | None:intergenic | 30.0% | |
| ACTACCTGAGTAGTATAAAT+AGG | - | chr4_1:5434863-5434882 | Msa0531230:CDS | 30.0% | |
| CTACCTGAGTAGTATAAATA+GGG | - | chr4_1:5434864-5434883 | Msa0531230:CDS | 30.0% | |
| TACCTGAGTAGTATAAATAG+GGG | - | chr4_1:5434865-5434884 | Msa0531230:CDS | 30.0% | |
| TTGAATCTGTTACAATGAGT+CGG | - | chr4_1:5435041-5435060 | Msa0531230:CDS | 30.0% | |
| GATAAATCTCTGCAATTACA+TGG | + | chr4_1:5435253-5435272 | None:intergenic | 30.0% | |
| AACATTGTAATGTTCCAACT+TGG | + | chr4_1:5435336-5435355 | None:intergenic | 30.0% | |
| CAAGACGGATACTTTAATAA+AGG | - | chr4_1:5435446-5435465 | Msa0531230:CDS | 30.0% | |
| AAAATGCGAACATAGCAAAA+TGG | - | chr4_1:5435663-5435682 | Msa0531230:CDS | 30.0% | |
| !!! | TCGTTTTTTTCTCTCTTTAG+TGG | + | chr4_1:5435786-5435805 | None:intergenic | 30.0% |
| TAAGAATCATGAAACAAACG+CGG | + | chr4_1:5435975-5435994 | None:intergenic | 30.0% | |
| !! | GGTAAATTTTGGTGTAGTTT+AGG | - | chr4_1:5436105-5436124 | Msa0531230:intron | 30.0% |
| ! | GTGTAGTTTAGGATTTAGAT+AGG | - | chr4_1:5436116-5436135 | Msa0531230:intron | 30.0% |
| !! | GTAAATTTTGGTAGCTTAGA+TGG | - | chr4_1:5436438-5436457 | Msa0531230:intron | 30.0% |
| ACAAGAAGCTTACAAAGATT+TGG | + | chr4_1:5436466-5436485 | None:intergenic | 30.0% | |
| !! | TCTTTGTAAGCTTCTTGTTT+TGG | - | chr4_1:5436468-5436487 | Msa0531230:intron | 30.0% |
| AACCCCAAAAAACAAAAGAT+AGG | - | chr4_1:5436962-5436981 | Msa0531230:intron | 30.0% | |
| ACCCCAAAAAACAAAAGATA+GGG | - | chr4_1:5436963-5436982 | Msa0531230:intron | 30.0% | |
| !!! | TCCCCTATCTTTTGTTTTTT+GGG | + | chr4_1:5436968-5436987 | None:intergenic | 30.0% |
| !!! | TTCCCCTATCTTTTGTTTTT+TGG | + | chr4_1:5436969-5436988 | None:intergenic | 30.0% |
| AACACACTCTTCTATCTTAT+GGG | + | chr4_1:5437022-5437041 | None:intergenic | 30.0% | |
| AAACACACTCTTCTATCTTA+TGG | + | chr4_1:5437023-5437042 | None:intergenic | 30.0% | |
| TTTGTCAGTGTCATCTTAAT+GGG | - | chr4_1:5437370-5437389 | Msa0531230:intron | 30.0% | |
| TTATGAATAAGCAACCCAAT+TGG | - | chr4_1:5437572-5437591 | Msa0531230:intron | 30.0% | |
| TAATATAATGTCCCACTTTG+TGG | - | chr4_1:5437635-5437654 | Msa0531230:intron | 30.0% | |
| AATATAATGTCCCACTTTGT+GGG | - | chr4_1:5437636-5437655 | Msa0531230:intron | 30.0% | |
| !! | TTTCTGAGCTGATTTTTAAC+AGG | - | chr4_1:5437699-5437718 | Msa0531230:intron | 30.0% |
| TAGAAGTTCTTTCTGTAATG+GGG | - | chr4_1:5437867-5437886 | Msa0531230:intron | 30.0% | |
| TTGGAGTAGATTTATTCTGT+TGG | + | chr4_1:5438063-5438082 | None:intergenic | 30.0% | |
| GATTGAAAATGAGGATAAGA+AGG | - | chr4_1:5438342-5438361 | Msa0531230:intron | 30.0% | |
| !!! | GTATTTTTTTCTTCTGTAGG+AGG | + | chr4_1:5438409-5438428 | None:intergenic | 30.0% |
| AAATAGTGAAAGCAAGGATA+AGG | - | chr4_1:5438450-5438469 | Msa0531230:intron | 30.0% | |
| GCTGTTGAAATGATTTGAAA+GGG | + | chr4_1:5438573-5438592 | None:intergenic | 30.0% | |
| AGCTGTTGAAATGATTTGAA+AGG | + | chr4_1:5438574-5438593 | None:intergenic | 30.0% | |
| !!! | TCTTCTTCCTTATTTTCCTT+CGG | - | chr4_1:5438640-5438659 | Msa0531230:intron | 30.0% |
| TTAGATAAACCAAGACCTAA+AGG | + | chr4_1:5438736-5438755 | None:intergenic | 30.0% | |
| TATTTGTGAGCTTCATTTCA+GGG | + | chr4_1:5439026-5439045 | None:intergenic | 30.0% | |
| ATATTTGTGAGCTTCATTTC+AGG | + | chr4_1:5439027-5439046 | None:intergenic | 30.0% | |
| TGAAATGAAGCTCACAAATA+TGG | - | chr4_1:5439026-5439045 | Msa0531230:intron | 30.0% | |
| TCAATGCAAATGTTGAAAGA+CGG | + | chr4_1:5439095-5439114 | None:intergenic | 30.0% | |
| TTTGCATTGAAGTTCAAAGA+TGG | - | chr4_1:5439105-5439124 | Msa0531230:intron | 30.0% | |
| TTGCATTGAAGTTCAAAGAT+GGG | - | chr4_1:5439106-5439125 | Msa0531230:intron | 30.0% | |
| GGGTTAATACTTGAATTGCT+TGG | - | chr4_1:5434461-5434480 | Msa0531230:CDS | 35.0% | |
| !! | GGTAGATTTGATGGATTGTT+TGG | + | chr4_1:5434745-5434764 | None:intergenic | 35.0% |
| AGAGAAAGAGGTGAGAAATA+AGG | + | chr4_1:5434766-5434785 | None:intergenic | 35.0% | |
| GAAGTTGTGAAGAGAGAAAT+AGG | + | chr4_1:5434808-5434827 | None:intergenic | 35.0% | |
| GGTAGTAATGAAATCCTTCA+GGG | + | chr4_1:5434849-5434868 | None:intergenic | 35.0% | |
| AGGTAGTAATGAAATCCTTC+AGG | + | chr4_1:5434850-5434869 | None:intergenic | 35.0% | |
| ATCCCCTATTTATACTACTC+AGG | + | chr4_1:5434870-5434889 | None:intergenic | 35.0% | |
| AATTACATGGAGAGAATACG+TGG | + | chr4_1:5435240-5435259 | None:intergenic | 35.0% | |
| AATTCTCGTGAGACACAAAA+TGG | - | chr4_1:5435277-5435296 | Msa0531230:CDS | 35.0% | |
| !!! | CTACCTAAGAGTTTTAAGGT+CGG | - | chr4_1:5435310-5435329 | Msa0531230:CDS | 35.0% |
| AAATATACACCCGATATTCG+CGG | - | chr4_1:5435404-5435423 | Msa0531230:CDS | 35.0% | |
| ! | AGATTTTATCCGCGAATATC+GGG | + | chr4_1:5435416-5435435 | None:intergenic | 35.0% |
| ! | CAGATTTTATCCGCGAATAT+CGG | + | chr4_1:5435417-5435436 | None:intergenic | 35.0% |
| !! | TCATGTTAACTTGTGCTCTT+AGG | - | chr4_1:5435470-5435489 | Msa0531230:CDS | 35.0% |
| !! | CATGTTAACTTGTGCTCTTA+GGG | - | chr4_1:5435471-5435490 | Msa0531230:CDS | 35.0% |
| ! | GAAACGTATTGGACACTTTT+CGG | + | chr4_1:5435636-5435655 | None:intergenic | 35.0% |
| AGAACACGTGAGAATATAGT+AGG | - | chr4_1:5435695-5435714 | Msa0531230:CDS | 35.0% | |
| GAACACGTGAGAATATAGTA+GGG | - | chr4_1:5435696-5435715 | Msa0531230:CDS | 35.0% | |
| GAGAAAGTAAATCTGAAGAC+AGG | - | chr4_1:5435721-5435740 | Msa0531230:CDS | 35.0% | |
| ! | TTCTCTCTTTAGTGGATCAT+GGG | + | chr4_1:5435778-5435797 | None:intergenic | 35.0% |
| ! | TTTCTCTCTTTAGTGGATCA+TGG | + | chr4_1:5435779-5435798 | None:intergenic | 35.0% |
| !! | TGTAGCTCTTCGTTGTTTTA+GGG | + | chr4_1:5435847-5435866 | None:intergenic | 35.0% |
| !! | ATGTAGCTCTTCGTTGTTTT+AGG | + | chr4_1:5435848-5435867 | None:intergenic | 35.0% |
| ! | TTATGCGTTGCTGAGATTTT+TGG | - | chr4_1:5436083-5436102 | Msa0531230:intron | 35.0% |
| ! | TATGCGTTGCTGAGATTTTT+GGG | - | chr4_1:5436084-5436103 | Msa0531230:intron | 35.0% |
| !!! | TTGTAAGCTTCTTGTTTTGG+TGG | - | chr4_1:5436471-5436490 | Msa0531230:intron | 35.0% |
| GTGTATGTGTGTGTAACTTT+AGG | - | chr4_1:5436537-5436556 | Msa0531230:intron | 35.0% | |
| GAGTGACAGTGTAATAATGT+GGG | + | chr4_1:5436586-5436605 | None:intergenic | 35.0% | |
| TGAGTGACAGTGTAATAATG+TGG | + | chr4_1:5436587-5436606 | None:intergenic | 35.0% | |
| TAAGTTGTGAGCTGCTATAA+TGG | - | chr4_1:5436742-5436761 | Msa0531230:intron | 35.0% | |
| !! | TATACGCTATCTCACTTTTG+GGG | + | chr4_1:5436799-5436818 | None:intergenic | 35.0% |
| !! | CTATACGCTATCTCACTTTT+GGG | + | chr4_1:5436800-5436819 | None:intergenic | 35.0% |
| AAAAGTGAGATAGCGTATAG+CGG | - | chr4_1:5436800-5436819 | Msa0531230:intron | 35.0% | |
| TATAGCGGTATGACAAATAG+CGG | - | chr4_1:5436815-5436834 | Msa0531230:intron | 35.0% | |
| !!! | CCCCTATCTTTTGTTTTTTG+GGG | + | chr4_1:5436967-5436986 | None:intergenic | 35.0% |
| CCCCAAAAAACAAAAGATAG+GGG | - | chr4_1:5436964-5436983 | Msa0531230:intron | 35.0% | |
| !! | AGATAGAAGAGTGTGTTTTG+CGG | - | chr4_1:5437025-5437044 | Msa0531230:intron | 35.0% |
| !! | AGCTGCTACTTGATTTTAGT+AGG | + | chr4_1:5437151-5437170 | None:intergenic | 35.0% |
| CTTTGTCAGTGTCATCTTAA+TGG | - | chr4_1:5437369-5437388 | Msa0531230:intron | 35.0% | |
| GTGTCATCTTAATGGGATTT+CGG | - | chr4_1:5437377-5437396 | Msa0531230:intron | 35.0% | |
| AGAAGTTCTTTCTGTAATGG+GGG | - | chr4_1:5437868-5437887 | Msa0531230:intron | 35.0% | |
| CTTACAGTCGTCAAAGAAAA+GGG | - | chr4_1:5437904-5437923 | Msa0531230:intron | 35.0% | |
| !! | TGTTACTTTGACCATTCTTC+TGG | + | chr4_1:5438035-5438054 | None:intergenic | 35.0% |
| TACTTCAAACAACGATGTTG+CGG | - | chr4_1:5438228-5438247 | Msa0531230:intron | 35.0% | |
| GGTAGATAATGAACAGAGTA+AGG | - | chr4_1:5438309-5438328 | Msa0531230:intron | 35.0% | |
| GATAATGAACAGAGTAAGGA+TGG | - | chr4_1:5438313-5438332 | Msa0531230:intron | 35.0% | |
| TGGACGTAAGATTGAAAATG+AGG | - | chr4_1:5438333-5438352 | Msa0531230:intron | 35.0% | |
| TAAGAAGGAAGTTGCTGATA+AGG | - | chr4_1:5438357-5438376 | Msa0531230:intron | 35.0% | |
| ACTGAGAACAGTGATAAGAA+CGG | - | chr4_1:5438427-5438446 | Msa0531230:intron | 35.0% | |
| AGACAAAGTAAGTGAAAGCA+AGG | - | chr4_1:5438474-5438493 | Msa0531230:intron | 35.0% | |
| AGTAAGTGAAAGCAAGGATA+AGG | - | chr4_1:5438480-5438499 | Msa0531230:intron | 35.0% | |
| AGTAAGCGAAAGCAAAGATA+AGG | - | chr4_1:5438510-5438529 | Msa0531230:intron | 35.0% | |
| !!! | CTTCTTCCTTATTTTCCTTC+GGG | - | chr4_1:5438641-5438660 | Msa0531230:intron | 35.0% |
| !! | AACAAATGATGGGTCTACTT+TGG | - | chr4_1:5438669-5438688 | Msa0531230:intron | 35.0% |
| !! | ACAAATGATGGGTCTACTTT+GGG | - | chr4_1:5438670-5438689 | Msa0531230:intron | 35.0% |
| GTGAAAGTGAATGTAACTAG+TGG | - | chr4_1:5438928-5438947 | Msa0531230:intron | 35.0% | |
| AACTAGTGGAACAGAAAAGA+AGG | - | chr4_1:5438942-5438961 | Msa0531230:intron | 35.0% | |
| AATTTCCCTTAGACCTCATA+AGG | + | chr4_1:5438975-5438994 | None:intergenic | 35.0% | |
| CTCACAAATATGGAGAAGAA+GGG | - | chr4_1:5439036-5439055 | Msa0531230:intron | 35.0% | |
| GTTCCTAATCGTAAGCATAG+TGG | - | chr4_1:5434529-5434548 | Msa0531230:CDS | 40.0% | |
| ACTCCACTATGCTTACGATT+AGG | + | chr4_1:5434535-5434554 | None:intergenic | 40.0% | |
| GAGTTTGAGAAGAGAGAAAG+AGG | + | chr4_1:5434778-5434797 | None:intergenic | 40.0% | |
| AATTTCCAACTCACAAGGAG+TGG | + | chr4_1:5434977-5434996 | None:intergenic | 40.0% | |
| CTGGAAATTTCCAACTCACA+AGG | + | chr4_1:5434982-5435001 | None:intergenic | 40.0% | |
| TTGTGTCTCACGAGAATTGA+AGG | + | chr4_1:5435275-5435294 | None:intergenic | 40.0% | |
| CACTGAACTATTCTTCTTCC+CGG | - | chr4_1:5435881-5435900 | Msa0531230:intron | 40.0% | |
| ! | TGAAGTTTCTCACCGTTTTC+CGG | + | chr4_1:5435923-5435942 | None:intergenic | 40.0% |
| ACATACACGCTAAAAAAGCG+CGG | + | chr4_1:5436525-5436544 | None:intergenic | 40.0% | |
| TGTCACTCATCCATATACGA+CGG | - | chr4_1:5436598-5436617 | Msa0531230:intron | 40.0% | |
| TCCATATACGACGGTATTAG+AGG | - | chr4_1:5436607-5436626 | Msa0531230:intron | 40.0% | |
| TCCTCTAATACCGTCGTATA+TGG | + | chr4_1:5436611-5436630 | None:intergenic | 40.0% | |
| ! | GCTATACGCTATCTCACTTT+TGG | + | chr4_1:5436801-5436820 | None:intergenic | 40.0% |
| AAATCAAGTAGCAGCTGAAG+CGG | - | chr4_1:5437155-5437174 | Msa0531230:intron | 40.0% | |
| ! | ATAAGCAACCCAATTGGCTT+TGG | - | chr4_1:5437578-5437597 | Msa0531230:intron | 40.0% |
| ACCAAGAACCAAAGCCAATT+GGG | + | chr4_1:5437589-5437608 | None:intergenic | 40.0% | |
| AACCAAGAACCAAAGCCAAT+TGG | + | chr4_1:5437590-5437609 | None:intergenic | 40.0% | |
| !! | ATTGGCTTTGGTTCTTGGTT+TGG | - | chr4_1:5437590-5437609 | Msa0531230:intron | 40.0% |
| ! | CAAACCTTTTCCCACAAAGT+GGG | + | chr4_1:5437649-5437668 | None:intergenic | 40.0% |
| ! | CCTTTTCTTTGACGACTGTA+AGG | + | chr4_1:5437906-5437925 | None:intergenic | 40.0% |
| CCTTACAGTCGTCAAAGAAA+AGG | - | chr4_1:5437903-5437922 | Msa0531230:intron | 40.0% | |
| ! | TCTTCATCCTTAGCTTTCTC+TGG | + | chr4_1:5438163-5438182 | None:intergenic | 40.0% |
| !!! | AGGTTCTTTTTCGATCTCAC+TGG | + | chr4_1:5438389-5438408 | None:intergenic | 40.0% |
| GAACGGAAATAGTGAAAGCA+AGG | - | chr4_1:5438444-5438463 | Msa0531230:intron | 40.0% | |
| AGCAATCAAAATGCCTTCAC+AGG | - | chr4_1:5438598-5438617 | Msa0531230:intron | 40.0% | |
| TGTAGACCCGAAGGAAAATA+AGG | + | chr4_1:5438650-5438669 | None:intergenic | 40.0% | |
| !! | ATCATTTGTTGTAGACCCGA+AGG | + | chr4_1:5438659-5438678 | None:intergenic | 40.0% |
| TTCGGGTCTACAACAAATGA+TGG | - | chr4_1:5438658-5438677 | Msa0531230:intron | 40.0% | |
| TCGGGTCTACAACAAATGAT+GGG | - | chr4_1:5438659-5438678 | Msa0531230:intron | 40.0% | |
| ATAAACCAAGACCTAAAGGC+TGG | + | chr4_1:5438732-5438751 | None:intergenic | 40.0% | |
| TTATCTAACGCTGGAAGTTC+TGG | - | chr4_1:5438748-5438767 | Msa0531230:intron | 40.0% | |
| !!! | AGTTCTGGTTTTGGAACATC+AGG | - | chr4_1:5438763-5438782 | Msa0531230:intron | 40.0% |
| !! | GTGTTGTTTGAGTTTGCAGA+TGG | - | chr4_1:5438877-5438896 | Msa0531230:intron | 40.0% |
| ! | TTGTTTGAGTTTGCAGATGG+AGG | - | chr4_1:5438880-5438899 | Msa0531230:intron | 40.0% |
| GCTCACAAATATGGAGAAGA+AGG | - | chr4_1:5439035-5439054 | Msa0531230:intron | 40.0% | |
| AGTCTTGAAATCCTCCACTA+TGG | + | chr4_1:5439133-5439152 | None:intergenic | 40.0% | |
| GAAATCCTTCAGGGTGTGTT+TGG | + | chr4_1:5434840-5434859 | None:intergenic | 45.0% | |
| ACTATCCACTCCTTGTGAGT+TGG | - | chr4_1:5434969-5434988 | Msa0531230:CDS | 45.0% | |
| CTCGTGAGACACAAAATGGA+TGG | - | chr4_1:5435281-5435300 | Msa0531230:CDS | 45.0% | |
| TGGCCGACCTTAAAACTCTT+AGG | + | chr4_1:5435316-5435335 | None:intergenic | 45.0% | |
| !!! | AGTTTTAAGGTCGGCCAAGT+TGG | - | chr4_1:5435319-5435338 | Msa0531230:CDS | 45.0% |
| TTCGCGGATAAAATCTGTCC+CGG | - | chr4_1:5435420-5435439 | Msa0531230:CDS | 45.0% | |
| ! | TAAAGTATCCGTCTTGTGCC+CGG | + | chr4_1:5435442-5435461 | None:intergenic | 45.0% |
| CACGTGAGAATATAGTAGGG+TGG | - | chr4_1:5435699-5435718 | Msa0531230:CDS | 45.0% | |
| !! | CTTGAATGTGGATTGGGCTT+TGG | + | chr4_1:5435755-5435774 | None:intergenic | 45.0% |
| CATGGGCTTGAATGTGGATT+GGG | + | chr4_1:5435761-5435780 | None:intergenic | 45.0% | |
| TCATGGGCTTGAATGTGGAT+TGG | + | chr4_1:5435762-5435781 | None:intergenic | 45.0% | |
| ! | CATACACGCTAAAAAAGCGC+GGG | + | chr4_1:5436524-5436543 | None:intergenic | 45.0% |
| GCTGCTATAATGGTGAATCC+CGG | - | chr4_1:5436752-5436771 | Msa0531230:intron | 45.0% | |
| TAATGGTGAATCCCGGATAG+CGG | - | chr4_1:5436759-5436778 | Msa0531230:intron | 45.0% | |
| AGCGCTGCTATTGTCTACTA+TGG | - | chr4_1:5437247-5437266 | Msa0531230:intron | 45.0% | |
| CAGGCAAAACGAAACCATAG+TGG | + | chr4_1:5437289-5437308 | None:intergenic | 45.0% | |
| ! | TACAGCAACTTAGGAAGCAC+AGG | + | chr4_1:5437308-5437327 | None:intergenic | 45.0% |
| TGTGCTTCCTAAGTTGCTGT+AGG | - | chr4_1:5437307-5437326 | Msa0531230:intron | 45.0% | |
| AGAGAAGCCTACAGCAACTT+AGG | + | chr4_1:5437317-5437336 | None:intergenic | 45.0% | |
| !! | ACCCAATTGGCTTTGGTTCT+TGG | - | chr4_1:5437585-5437604 | Msa0531230:intron | 45.0% |
| !! | GCTTTGGTTCTTGGTTTGGA+TGG | - | chr4_1:5437594-5437613 | Msa0531230:intron | 45.0% |
| ATGTCCCACTTTGTGGGAAA+AGG | - | chr4_1:5437642-5437661 | Msa0531230:intron | 45.0% | |
| ! | CCAAACCTTTTCCCACAAAG+TGG | + | chr4_1:5437650-5437669 | None:intergenic | 45.0% |
| CCACTTTGTGGGAAAAGGTT+TGG | - | chr4_1:5437647-5437666 | Msa0531230:intron | 45.0% | |
| TCATCTTCCTCGTCGTCAAT+AGG | + | chr4_1:5437959-5437978 | None:intergenic | 45.0% | |
| !! | ACTGGCTTTCTTGAAAGTCC+CGG | + | chr4_1:5437996-5438015 | None:intergenic | 45.0% |
| GACTTTCAAGAAAGCCAGTG+AGG | - | chr4_1:5437997-5438016 | Msa0531230:intron | 45.0% | |
| TTTCAAGAAAGCCAGTGAGG+AGG | - | chr4_1:5438000-5438019 | Msa0531230:intron | 45.0% | |
| GGTTCTTGCAACCAGAAGAA+TGG | - | chr4_1:5438021-5438040 | Msa0531230:intron | 45.0% | |
| AGTAGTAGCTTCACCAGACT+TGG | + | chr4_1:5438131-5438150 | None:intergenic | 45.0% | |
| GTAGATTTGTCCTCAACCTC+AGG | + | chr4_1:5438211-5438230 | None:intergenic | 45.0% | |
| ATGGGTCTACTTTGGGTAGT+GGG | - | chr4_1:5438677-5438696 | Msa0531230:intron | 45.0% | |
| ! | AGTGGGTCCGGTTCTATTTT+TGG | - | chr4_1:5438694-5438713 | Msa0531230:intron | 45.0% |
| TTGAAACCTGACCAGCCTTT+AGG | - | chr4_1:5438718-5438737 | Msa0531230:intron | 45.0% | |
| GGTCTTGGTTTATCTAACGC+TGG | - | chr4_1:5438739-5438758 | Msa0531230:intron | 45.0% | |
| !!! | AACGCTGGAAGTTCTGGTTT+TGG | - | chr4_1:5438754-5438773 | Msa0531230:intron | 45.0% |
| TTCCAAGACTGAAACACTGC+AGG | - | chr4_1:5438798-5438817 | Msa0531230:intron | 45.0% | |
| TTCCTGCAGTGTTTCAGTCT+TGG | + | chr4_1:5438803-5438822 | None:intergenic | 45.0% | |
| CAGGAAGTCGTTGTTGAAAC+CGG | - | chr4_1:5438817-5438836 | Msa0531230:intron | 45.0% | |
| TGAAACCGGTGAAGAAAACG+AGG | - | chr4_1:5438831-5438850 | Msa0531230:intron | 45.0% | |
| ! | CACTTCCTCGTTTTCTTCAC+CGG | + | chr4_1:5438839-5438858 | None:intergenic | 45.0% |
| TTGAGTTTGCAGATGGAGGT+TGG | - | chr4_1:5438884-5438903 | Msa0531230:intron | 45.0% | |
| CTTAGACCTCATAAGGACTC+GGG | + | chr4_1:5438968-5438987 | None:intergenic | 45.0% | |
| CCTTAGACCTCATAAGGACT+CGG | + | chr4_1:5438969-5438988 | None:intergenic | 45.0% | |
| CGAGTCCTTATGAGGTCTAA+GGG | - | chr4_1:5438967-5438986 | Msa0531230:intron | 45.0% | |
| GTTCAAAGATGGGTCCATAG+TGG | - | chr4_1:5439116-5439135 | Msa0531230:intron | 45.0% | |
| ACTGCTATCACAGCACACAA+GGG | - | chr4_1:5439150-5439169 | Msa0531230:intron | 45.0% | |
| !!! | TAAAAAAGATTTTAAAAATA+GGG | - | chr4_1:5437110-5437129 | Msa0531230:intron | 5.0% |
| CAGCTGAGCTGATGCATCAA+TGG | - | chr4_1:5434556-5434575 | Msa0531230:CDS | 50.0% | |
| CTACACCAAACACACCCTGA+AGG | - | chr4_1:5434832-5434851 | Msa0531230:CDS | 50.0% | |
| TCGCGGATAAAATCTGTCCC+GGG | - | chr4_1:5435421-5435440 | Msa0531230:CDS | 50.0% | |
| ! | AAAGTATCCGTCTTGTGCCC+GGG | + | chr4_1:5435441-5435460 | None:intergenic | 50.0% |
| GTGGATCATGGGCTTGAATG+TGG | + | chr4_1:5435767-5435786 | None:intergenic | 50.0% | |
| TTCTTCCCGGAATCGCTCTT+CGG | - | chr4_1:5435894-5435913 | Msa0531230:intron | 50.0% | |
| ! | AGTTTCTCACCGTTTTCCGG+TGG | + | chr4_1:5435920-5435939 | None:intergenic | 50.0% |
| !! | AAGAGTGTGTTTTGCGGCAC+AGG | - | chr4_1:5437031-5437050 | Msa0531230:intron | 50.0% |
| AGCGGCGCAGAATCAAATAG+CGG | + | chr4_1:5437181-5437200 | None:intergenic | 50.0% | |
| TCGTCAAAGAAAAGGGCTGC+TGG | - | chr4_1:5437911-5437930 | Msa0531230:intron | 50.0% | |
| CGTCAAAGAAAAGGGCTGCT+GGG | - | chr4_1:5437912-5437931 | Msa0531230:intron | 50.0% | |
| !! | GTCGTCAATAGGAGTGTCTC+GGG | + | chr4_1:5437948-5437967 | None:intergenic | 50.0% |
| !! | CGTCGTCAATAGGAGTGTCT+CGG | + | chr4_1:5437949-5437968 | None:intergenic | 50.0% |
| AGACACTCCTATTGACGACG+AGG | - | chr4_1:5437949-5437968 | Msa0531230:intron | 50.0% | |
| CTTGAAAGTCCCGGCTTCAA+GGG | + | chr4_1:5437987-5438006 | None:intergenic | 50.0% | |
| TCTTGAAAGTCCCGGCTTCA+AGG | + | chr4_1:5437988-5438007 | None:intergenic | 50.0% | |
| TCTACTCCAAACCCTTTCGC+TGG | - | chr4_1:5438073-5438092 | Msa0531230:intron | 50.0% | |
| CGTATACCAGCGAAAGGGTT+TGG | + | chr4_1:5438082-5438101 | None:intergenic | 50.0% | |
| GCAAGCGTATACCAGCGAAA+GGG | + | chr4_1:5438087-5438106 | None:intergenic | 50.0% | |
| ! | GACTTGGCAGTGGATTCAGT+AGG | + | chr4_1:5438115-5438134 | None:intergenic | 50.0% |
| ACTGAATCCACTGCCAAGTC+TGG | - | chr4_1:5438115-5438134 | Msa0531230:intron | 50.0% | |
| AACGCAGCCAGAGAAAGCTA+AGG | - | chr4_1:5438153-5438172 | Msa0531230:intron | 50.0% | |
| GTTGCGGACAGAAACAATGC+AGG | - | chr4_1:5438244-5438263 | Msa0531230:intron | 50.0% | |
| GGACAGAAACAATGCAGGCA+AGG | - | chr4_1:5438249-5438268 | Msa0531230:intron | 50.0% | |
| GAGCGACAGTGACAACTCTA+AGG | - | chr4_1:5438288-5438307 | Msa0531230:intron | 50.0% | |
| AATGCCTTCACAGGTCTTGC+TGG | - | chr4_1:5438607-5438626 | Msa0531230:intron | 50.0% | |
| ATGCCTTCACAGGTCTTGCT+GGG | - | chr4_1:5438608-5438627 | Msa0531230:intron | 50.0% | |
| GATGGGTCTACTTTGGGTAG+TGG | - | chr4_1:5438676-5438695 | Msa0531230:intron | 50.0% | |
| !! | TCTACTTTGGGTAGTGGGTC+CGG | - | chr4_1:5438682-5438701 | Msa0531230:intron | 50.0% |
| CGGTGAAGAAAACGAGGAAG+TGG | - | chr4_1:5438837-5438856 | Msa0531230:intron | 50.0% | |
| GTTTGCAGATGGAGGTTGGA+AGG | - | chr4_1:5438888-5438907 | Msa0531230:intron | 50.0% | |
| AGGTTGGAAGGAACGTGGAA+AGG | - | chr4_1:5438900-5438919 | Msa0531230:intron | 50.0% | |
| GGTTGGAAGGAACGTGGAAA+GGG | - | chr4_1:5438901-5438920 | Msa0531230:intron | 50.0% | |
| CCGAGTCCTTATGAGGTCTA+AGG | - | chr4_1:5438966-5438985 | Msa0531230:intron | 50.0% | |
| ! | ACCTTTGCATGTGCCACTGA+AGG | - | chr4_1:5439063-5439082 | Msa0531230:intron | 50.0% |
| ! | CCTTTGCATGTGCCACTGAA+GGG | - | chr4_1:5439064-5439083 | Msa0531230:intron | 50.0% |
| AAGACGGTCTTTCCCTTCAG+TGG | + | chr4_1:5439079-5439098 | None:intergenic | 50.0% | |
| CAAAGATGGGTCCATAGTGG+AGG | - | chr4_1:5439119-5439138 | Msa0531230:intron | 50.0% | |
| GACTGCTATCACAGCACACA+AGG | - | chr4_1:5439149-5439168 | Msa0531230:intron | 50.0% | |
| CTATCACAGCACACAAGGGT+GGG | - | chr4_1:5439154-5439173 | Msa0531230:intron | 50.0% | |
| TATCACAGCACACAAGGGTG+GGG | - | chr4_1:5439155-5439174 | Msa0531230:intron | 50.0% | |
| AATCTGTCCCGGGCACAAGA+CGG | - | chr4_1:5435431-5435450 | Msa0531230:CDS | 55.0% | |
| CGCTACACTGATCGTCGTAG+CGG | + | chr4_1:5437199-5437218 | None:intergenic | 55.0% | |
| CGCTACGACGATCAGTGTAG+CGG | - | chr4_1:5437197-5437216 | Msa0531230:intron | 55.0% | |
| GGTTGCAAGAACCTCCTCAC+TGG | + | chr4_1:5438014-5438033 | None:intergenic | 55.0% | |
| GGCAAGCGTATACCAGCGAA+AGG | + | chr4_1:5438088-5438107 | None:intergenic | 55.0% | |
| ! | GCAGTGGATTCAGTAGGAGC+AGG | + | chr4_1:5438109-5438128 | None:intergenic | 55.0% |
| AGCTTCACCAGACTTGGCAG+TGG | + | chr4_1:5438125-5438144 | None:intergenic | 55.0% | |
| ACCTCAGGAGCTTTGCTCTC+TGG | + | chr4_1:5438196-5438215 | None:intergenic | 55.0% | |
| GAGCAAAGCTCCTGAGGTTG+AGG | - | chr4_1:5438198-5438217 | Msa0531230:intron | 55.0% | |
| CAATGCAGGCAAGGAGCTTG+CGG | - | chr4_1:5438258-5438277 | Msa0531230:intron | 55.0% | |
| AGTGACGAGCCTACTGCTGA+AGG | - | chr4_1:5438544-5438563 | Msa0531230:intron | 55.0% | |
| AAAGGGCCACCTTCAGCAGT+AGG | + | chr4_1:5438556-5438575 | None:intergenic | 55.0% | |
| AGACCCAGCAAGACCTGTGA+AGG | + | chr4_1:5438614-5438633 | None:intergenic | 55.0% | |
| TTCACAGGTCTTGCTGGGTC+TGG | - | chr4_1:5438613-5438632 | Msa0531230:intron | 55.0% | |
| ! | CCAAGACCTAAAGGCTGGTC+AGG | + | chr4_1:5438727-5438746 | None:intergenic | 55.0% |
| CCTGACCAGCCTTTAGGTCT+TGG | - | chr4_1:5438724-5438743 | Msa0531230:intron | 55.0% | |
| GATGGAGGTTGGAAGGAACG+TGG | - | chr4_1:5438895-5438914 | Msa0531230:intron | 55.0% | |
| AGAAGGCCCGAGTCCTTATG+AGG | - | chr4_1:5438959-5438978 | Msa0531230:intron | 55.0% | |
| CCCTTCAGTGGCACATGCAA+AGG | + | chr4_1:5439067-5439086 | None:intergenic | 55.0% | |
| GCTATCACAGCACACAAGGG+TGG | - | chr4_1:5439153-5439172 | Msa0531230:intron | 55.0% | |
| GACTCCAGAGAACTCTCCCA+AGG | - | chr4_1:5439194-5439213 | Msa0531230:intron | 55.0% | |
| GAAGCCTTGGGAGAGTTCTC+TGG | + | chr4_1:5439201-5439220 | None:intergenic | 55.0% | |
| GCTCTTCGGCCACCGGAAAA+CGG | - | chr4_1:5435908-5435927 | Msa0531230:intron | 60.0% | |
| GCTATAGCTGCCGTGCGTAG+CGG | + | chr4_1:5437230-5437249 | None:intergenic | 60.0% | |
| GATGACGCTGCCCTTGAAGC+CGG | - | chr4_1:5437974-5437993 | Msa0531230:intron | 60.0% | |
| ATGACGCTGCCCTTGAAGCC+GGG | - | chr4_1:5437975-5437994 | Msa0531230:intron | 60.0% | |
| GCCAGAGAGCAAAGCTCCTG+AGG | - | chr4_1:5438192-5438211 | Msa0531230:intron | 60.0% | |
| AGGCAAGGAGCTTGCGGAGA+AGG | - | chr4_1:5438264-5438283 | Msa0531230:intron | 60.0% | |
| GACGAGCCTACTGCTGAAGG+TGG | - | chr4_1:5438547-5438566 | Msa0531230:intron | 60.0% | |
| GGTGGCCGAAGAGCGATTCC+GGG | + | chr4_1:5435902-5435921 | None:intergenic | 65.0% | |
| CGGTGGCCGAAGAGCGATTC+CGG | + | chr4_1:5435903-5435922 | None:intergenic | 65.0% | |
| CGGAATCGCTCTTCGGCCAC+CGG | - | chr4_1:5435901-5435920 | Msa0531230:intron | 65.0% | |
| ! | TCCCGGATAGCGGTGCGTAG+CGG | - | chr4_1:5436769-5436788 | Msa0531230:intron | 65.0% |
| ACCGCTACGCACCGCTATCC+GGG | + | chr4_1:5436773-5436792 | None:intergenic | 65.0% | |
| GACCGCTACGCACCGCTATC+CGG | + | chr4_1:5436774-5436793 | None:intergenic | 65.0% | |
| CGGTTCGTCGCCGCTACGCA+CGG | - | chr4_1:5437217-5437236 | Msa0531230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 5434459 | 5439230 | 5434459 | ID=Msa0531230;Name=Msa0531230 |
| chr4_1 | mRNA | 5434459 | 5439230 | 5434459 | ID=Msa0531230-mRNA-1;Parent=Msa0531230;Name=Msa0531230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|0|0|2|0|454 |
| chr4_1 | exon | 5439227 | 5439230 | 5439227 | ID=Msa0531230-mRNA-1:exon:1766;Parent=Msa0531230-mRNA-1 |
| chr4_1 | exon | 5434459 | 5435819 | 5434459 | ID=Msa0531230-mRNA-1:exon:1765;Parent=Msa0531230-mRNA-1 |
| chr4_1 | CDS | 5439227 | 5439230 | 5439227 | ID=Msa0531230-mRNA-1:cds;Parent=Msa0531230-mRNA-1 |
| chr4_1 | CDS | 5434459 | 5435819 | 5434459 | ID=Msa0531230-mRNA-1:cds;Parent=Msa0531230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
