AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0188690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188690 MtrunA17_Chr2g0277001 98.718 936 11 1 1 936 1 935 0.0 1919
Msa0188690 MtrunA17_Chr1g0155771 98.184 936 16 1 1 936 1 935 0.0 1905
Msa0188690 MtrunA17_Chr7g0275381 92.545 939 64 6 1 936 1 936 0.0 1637
Msa0188690 MtrunA17_Chr6g0468211 57.759 580 132 10 259 834 62 532 0.0 570
Msa0188690 MtrunA17_Chr2g0316781 51.852 405 49 7 164 567 12 271 1.77e-113 349
Msa0188690 MtrunA17_Chr2g0303811 82.581 155 27 0 565 719 1 155 2.18e-86 273
Msa0188690 MtrunA17_Chr6g0468421 57.752 258 41 3 322 579 1 190 1.47e-83 267
Msa0188690 MtrunA17_Chr6g0468011 60.606 198 47 4 259 454 12 180 6.82e-65 216
Msa0188690 MtrunA17_Chr6g0468411 75.556 135 29 1 556 686 5 139 3.57e-63 211
Msa0188690 MtrunA17_Chr2g0303821 62.385 109 40 1 727 834 1 109 8.73e-38 138
Msa0188690 MtrunA17_Chr6g0467931 67.000 100 31 2 726 823 1 100 5.61e-32 120
Msa0188690 MtrunA17_Chr6g0467941 47.917 144 23 2 543 686 1 92 4.00e-31 118
Msa0188690 MtrunA17_Chr6g0468001 58.559 111 24 3 726 834 1 91 5.80e-29 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188690 AT3G56150.2 66.843 944 261 15 1 936 1 900 0.0 1147
Msa0188690 AT3G56150.1 66.843 944 261 15 1 936 1 900 0.0 1147
Msa0188690 AT3G22860.1 64.123 616 202 6 243 848 181 787 0.0 796

Find 268 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAGTTCAAAGAGATTC+TGG 0.204715 2_1:+3893878 Msa0188690:CDS
GGCTAATCTGTTGTTGATTT+AGG 0.213717 2_1:+3892811 Msa0188690:five_prime_UTR
GCTGGGACTCATCTTCTTCT+TGG 0.219134 2_1:-3893514 None:intergenic
TGTAAAGATTAGGGATCTTT+TGG 0.232109 2_1:-3893434 None:intergenic
ACATGATCCCTGACAGTTTC+AGG 0.235192 2_1:-3896093 None:intergenic
TGTTTGTCTGAACTTTATTC+TGG 0.235265 2_1:+3894851 Msa0188690:CDS
CAATAATGTCAAAGGCCTTC+TGG 0.238181 2_1:-3896152 None:intergenic
GGTTTCCGCGCCACAAGTTC+CGG 0.248793 2_1:-3894551 None:intergenic
GCCACAAGGGTTCTTATTAA+TGG 0.250263 2_1:+3896123 Msa0188690:CDS
AAGCTGTAATACTGAATAAA+TGG 0.260781 2_1:-3896874 None:intergenic
TGCTCAGGCTTCTGCTAATA+AGG 0.263529 2_1:+3893488 Msa0188690:CDS
GGAAAATAGCAGGACCTTAA+TGG 0.268698 2_1:+3894583 Msa0188690:CDS
GCTAATCTGTTGTTGATTTA+GGG 0.278783 2_1:+3892812 Msa0188690:five_prime_UTR
GTTGAAGGCTTTGGCATTGC+TGG 0.280294 2_1:-3893532 None:intergenic
GAATCATCAACCTTTATGTT+TGG 0.286060 2_1:-3894122 None:intergenic
CCCTTGAGTGTTCAACATTT+CGG 0.288283 2_1:-3896425 None:intergenic
TCCAGTTCCCTTCCTGCCCC+TGG 0.302069 2_1:-3893904 None:intergenic
CTTCATTGAGTTGAAGGCTT+TGG 0.318286 2_1:-3893541 None:intergenic
CAGATTTAACAACACGCTTT+TGG 0.326666 2_1:-3893269 None:intergenic
TTATGAAGCAACGAGAAAAT+TGG 0.328433 2_1:+3894436 Msa0188690:CDS
GAGATGAGTGAGGAGTTAAA+AGG 0.329554 2_1:+3894488 Msa0188690:CDS
TTGTCTTGTCTTGTCTTGTC+TGG 0.330956 2_1:-3892853 None:intergenic
TATGCACTTAATCTAGATTC+TGG 0.334171 2_1:+3896953 Msa0188690:three_prime_UTR
AATCATCAACCTTTATGTTT+GGG 0.349179 2_1:-3894121 None:intergenic
GATTATGCCGCTGCAGCTGC+TGG 0.352272 2_1:+3896573 Msa0188690:CDS
CCGGGATTTAGTACCTGTTC+TGG 0.353112 2_1:-3894935 None:intergenic
GGTGGTAGTGGAACGTCTTC+AGG 0.355830 2_1:+3896597 Msa0188690:CDS
ATTAGCCGCTGCTACAAAAT+CGG 0.356247 2_1:-3892795 None:intergenic
TAGCAAGAAAGACAGGCTTT+TGG 0.359604 2_1:+3893806 Msa0188690:CDS
TACCCGCATGGTTAGCCTTA+GGG 0.360330 2_1:+3896824 Msa0188690:CDS
GGAGGCGGCTATCAGAATTC+AGG 0.361871 2_1:+3896753 Msa0188690:CDS
ACACTCAAGGGTGCAGGCTT+TGG 0.372615 2_1:+3896437 Msa0188690:CDS
ATGATGAAGAGAAGGTAAAT+AGG 0.373547 2_1:-3896266 None:intergenic
CAATGCTTTCAAGATATTCC+TGG 0.380146 2_1:-3894343 None:intergenic
AGATTTATATGCATATGATA+TGG 0.383704 2_1:-3895919 None:intergenic
ATGACCGTAGAGGGAGATAA+TGG 0.387791 2_1:+3894464 Msa0188690:CDS
GGCGCGGAAACCCACCTTCC+CGG 0.387923 2_1:+3894562 Msa0188690:CDS
GCAAGCTGGGATCAGCCAAC+TGG 0.390557 2_1:+3896390 Msa0188690:CDS
TCCGGCTTCCTGAGCTGATC+AGG 0.393176 2_1:-3893699 None:intergenic
AGATTTCAAAGCTTCTTCTA+AGG 0.393340 2_1:+3894367 Msa0188690:CDS
TAGATAATTTCTCAGTCAAC+TGG 0.394228 2_1:-3896464 None:intergenic
CTACCCGCATGGTTAGCCTT+AGG 0.397357 2_1:+3896823 Msa0188690:CDS
GCCAGGGGCAGGAAGGGAAC+TGG 0.399839 2_1:+3893903 Msa0188690:CDS
GCCTTGCCTTGTTTGAGAAT+AGG 0.400255 2_1:-3896640 None:intergenic
TGATGATGGCGATGCTCCTT+GGG 0.400541 2_1:+3893773 Msa0188690:CDS
GCTCAGTTTGATGTTAATCC+AGG 0.401276 2_1:+3894017 Msa0188690:CDS
CGGGTCCTCCTGAAACTGTC+AGG 0.402283 2_1:+3896085 Msa0188690:CDS
AGAGCCTTGATGTAAAGATT+AGG 0.402756 2_1:-3893444 None:intergenic
TACAAAATCGGGAAAGATAT+AGG 0.404456 2_1:-3892783 None:intergenic
GTGATGATGGCGATGCTCCT+TGG 0.404468 2_1:+3893772 Msa0188690:CDS
GCTTGAAGATTTCCTTGCTC+AGG 0.408980 2_1:+3893473 Msa0188690:CDS
AGATACCTGGTAAAAGAATC+TGG 0.410560 2_1:-3893014 None:intergenic
ATGTAAGATGCACTGATTCC+AGG 0.412950 2_1:-3895948 None:intergenic
GAGCCTTGATGTAAAGATTA+GGG 0.415850 2_1:-3893443 None:intergenic
ATGACGGACCCATTCATGTC+TGG 0.416244 2_1:+3894186 Msa0188690:CDS
CCGTTTGGATCGGTTGGGGC+AGG 0.418045 2_1:-3893192 None:intergenic
GCCGCTGCAGCTGCTGGTGG+TGG 0.418701 2_1:+3896579 Msa0188690:CDS
GTTTCCGCGCCACAAGTTCC+GGG 0.419096 2_1:-3894550 None:intergenic
TGATACTAACACATCCATTA+AGG 0.425287 2_1:-3894597 None:intergenic
GCAGCTGCTGGTGGTGGTAG+TGG 0.425549 2_1:+3896585 Msa0188690:CDS
AATGAGTTCAACCCTCTTCA+AGG 0.428889 2_1:-3894393 None:intergenic
AACAGGGCTATGTCACAGTT+AGG 0.435704 2_1:+3894785 Msa0188690:CDS
TTGAAGGCTTTGGCATTGCT+GGG 0.436119 2_1:-3893531 None:intergenic
TGAACATTGGCCGCCATGTT+GGG 0.437116 2_1:-3895991 None:intergenic
CGTGCAGCACCCAAACATAA+AGG 0.438376 2_1:+3894112 Msa0188690:CDS
TGCCCATCTCTTCGCCTTGG+AGG 0.438441 2_1:-3896549 None:intergenic
TCAAAGAGATTCTGGAAGCC+AGG 0.439840 2_1:+3893886 Msa0188690:CDS
GCATATAAATCTTGAGCTCC+TGG 0.445116 2_1:+3895930 Msa0188690:CDS
GGCATATGCCCACTGAGGCC+TGG 0.449256 2_1:-3894035 None:intergenic
TCTTACATCTGCTATGCTGC+TGG 0.451584 2_1:+3895963 Msa0188690:CDS
CATTGGGAATTTGGGGAAGG+GGG 0.454395 2_1:-3897034 None:intergenic
ATGAGGAGCTTCATGCAAGC+TGG 0.457408 2_1:+3896376 Msa0188690:CDS
TTCAGTCAAGCTGGTGGGAG+TGG 0.458684 2_1:+3896702 Msa0188690:CDS
AAAAGCAAATACTACGTTGA+TGG 0.462288 2_1:+3893216 Msa0188690:CDS
GGACGAGGAACGGGTGGAGG+CGG 0.464180 2_1:+3896738 Msa0188690:CDS
ATGAGAATGAAACTAAGAAA+GGG 0.464510 2_1:+3894156 Msa0188690:CDS
AAGGCAAGGCAGCGGACGTA+CGG 0.464963 2_1:+3896653 Msa0188690:CDS
TCAGAATCCGACACGGGCTC+CGG 0.466090 2_1:-3893717 None:intergenic
GTCTTGTCTTGTCTGGAAGA+TGG 0.466648 2_1:-3892846 None:intergenic
ATGAACATTGGCCGCCATGT+TGG 0.468265 2_1:-3895992 None:intergenic
AATTATCTTTCAGGAAAGGT+TGG 0.471050 2_1:+3895879 Msa0188690:intron
TCCTGCCCATCTCTTCGCCT+TGG 0.472750 2_1:-3896552 None:intergenic
TTAGCCGCTGCTACAAAATC+GGG 0.473817 2_1:-3892794 None:intergenic
AACTGTCAGGGATCATGTTA+TGG 0.475362 2_1:+3896098 Msa0188690:CDS
TATTCTAGAGGACGAGGAAC+GGG 0.476091 2_1:+3896729 Msa0188690:CDS
ACATTGGGAATTTGGGGAAG+GGG 0.484034 2_1:-3897035 None:intergenic
ATTAAGTGCATAATGATAAA+CGG 0.484508 2_1:-3896942 None:intergenic
GGGAACTGGAAGGTTTGAAC+AGG 0.485450 2_1:+3893917 Msa0188690:CDS
GATTCTGAAACTTCTGAGCT+TGG 0.486351 2_1:+3893732 Msa0188690:CDS
AGAGGACGAGGAACGGGTGG+AGG 0.486498 2_1:+3896735 Msa0188690:CDS
TAAGTTGCCCCAGACATGAA+TGG 0.490965 2_1:-3894195 None:intergenic
GTCCTTCAGCATTTCTAGCA+CGG 0.492013 2_1:-3896214 None:intergenic
TCATGAAAAGACTCCAGAAC+AGG 0.493182 2_1:+3894922 Msa0188690:CDS
GTGAATATGTTGAGAGACTC+AGG 0.493281 2_1:+3894285 Msa0188690:CDS
CAGAATTCAGGGAGGACTCA+AGG 0.493339 2_1:+3896765 Msa0188690:CDS
GAAGCAAGGTTAGGCGGCGG+TGG 0.493372 2_1:+3896516 Msa0188690:CDS
AAATCAAGGAAGAGGCGCTT+AGG 0.494321 2_1:+3896238 Msa0188690:CDS
TCCGAAATGTTGAACACTCA+AGG 0.494976 2_1:+3896424 Msa0188690:CDS
TGACGGACCCATTCATGTCT+GGG 0.497542 2_1:+3894187 Msa0188690:CDS
GGAAAAGGATGACGAGGATG+AGG 0.497694 2_1:+3893638 Msa0188690:CDS
GGCAGCGGACGTACGGGATA+CGG 0.498017 2_1:+3896660 Msa0188690:CDS
CTTGGTAATGACAGGCCTCC+TGG 0.498069 2_1:+3893750 Msa0188690:CDS
CAGGAATATCTTGAAAGCAT+TGG 0.498525 2_1:+3894344 Msa0188690:CDS
TTATTCTGGTGGACGGGTGA+AGG 0.499453 2_1:+3894865 Msa0188690:CDS
GTACGGGATACGGTGGAGGA+AGG 0.505304 2_1:+3896670 Msa0188690:CDS
CTGGAAGCCAGGGGCAGGAA+GGG 0.505830 2_1:+3893897 Msa0188690:CDS
ATGTTAATCCAGGCCTCAGT+GGG 0.508312 2_1:+3894027 Msa0188690:CDS
ACCCGCATGGTTAGCCTTAG+GGG 0.508509 2_1:+3896825 Msa0188690:CDS
AGATTCTGGAAGCCAGGGGC+AGG 0.509743 2_1:+3893892 Msa0188690:CDS
AGAATTCAGGGAGGACTCAA+GGG 0.510031 2_1:+3896766 Msa0188690:CDS
AGAATCTGCAGCTTCTGAGC+AGG 0.511073 2_1:-3893978 None:intergenic
AAGTTGCCCCAGACATGAAT+GGG 0.512091 2_1:-3894194 None:intergenic
GATGAGAATGAAACTAAGAA+AGG 0.515170 2_1:+3894155 Msa0188690:CDS
TCCAAGGCGAAGAGATGGGC+AGG 0.515359 2_1:+3896551 Msa0188690:CDS
AAGGTTAGGCGGCGGTGGGT+TGG 0.516660 2_1:+3896521 Msa0188690:CDS
ACCTGATCAGCTCAGGAAGC+CGG 0.516893 2_1:+3893698 Msa0188690:CDS
TCATTGAACCTGATCAGCTC+AGG 0.519230 2_1:+3893691 Msa0188690:CDS
TGCTCCGTTTGTTGTTACCC+CGG 0.519622 2_1:+3894532 Msa0188690:CDS
GATCCCTAATCTTTACATCA+AGG 0.521376 2_1:+3893440 Msa0188690:CDS
AGGACTTGATTATCAAATGT+AGG 0.523141 2_1:+3893595 Msa0188690:CDS
CCGAAATGTTGAACACTCAA+GGG 0.523872 2_1:+3896425 Msa0188690:CDS
CTCAACATATTCACGTGTGT+GGG 0.525787 2_1:-3894276 None:intergenic
GTGGGTTGGATCTGCCTCCA+AGG 0.528953 2_1:+3896535 Msa0188690:CDS
TCCCCTAAGGCTAACCATGC+GGG 0.529790 2_1:-3896826 None:intergenic
TGTTCTTGCACAGAATGTCC+AGG 0.530188 2_1:+3894325 Msa0188690:CDS
CTGAACTTTATTCTGGTGGA+CGG 0.530497 2_1:+3894858 Msa0188690:CDS
AAAAGCTTAGCAAGAAAGAC+AGG 0.531266 2_1:+3893799 Msa0188690:CDS
AACATTGGGAATTTGGGGAA+GGG 0.531414 2_1:-3897036 None:intergenic
TTTACCGTTTGGATCGGTTG+GGG 0.531670 2_1:-3893196 None:intergenic
GTAAAAGAATCTGGAAGTCA+TGG 0.531738 2_1:-3893005 None:intergenic
CTCTCCATTATCTCCCTCTA+CGG 0.531803 2_1:-3894468 None:intergenic
GGGCTGGTTTCTGAAGCGCA+TGG 0.535363 2_1:+3894827 Msa0188690:CDS
CCACCTTCCCGGAAAATAGC+AGG 0.535658 2_1:+3894573 Msa0188690:CDS
GACTCATAAGCAACAGATCA+CGG 0.536368 2_1:-3894712 None:intergenic
AGGCAAGGCAGCGGACGTAC+GGG 0.536672 2_1:+3896654 Msa0188690:CDS
GACAGGCCTCCTGGTGATGA+TGG 0.536973 2_1:+3893759 Msa0188690:CDS
ATGCTATCAAGATCAATGAC+TGG 0.537887 2_1:+3893343 Msa0188690:CDS
TGTTGTTACCCCGGAACTTG+TGG 0.539965 2_1:+3894541 Msa0188690:CDS
CTGCCTCCAAGGCGAAGAGA+TGG 0.540348 2_1:+3896546 Msa0188690:CDS
TTGTCTGAACTTTATTCTGG+TGG 0.542410 2_1:+3894854 Msa0188690:CDS
CAAGCTGGGATCAGCCAACT+GGG 0.543584 2_1:+3896391 Msa0188690:CDS
GTGGAACGTCTTCAGGTGGC+AGG 0.543676 2_1:+3896604 Msa0188690:CDS
AGTTCCGGGGTAACAACAAA+CGG 0.544060 2_1:-3894536 None:intergenic
TGAGGAGCTTCATGCAAGCT+GGG 0.544437 2_1:+3896377 Msa0188690:CDS
TAGGGAGAGTCCTGAGAGTG+AGG 0.545078 2_1:+3893614 Msa0188690:CDS
GGGGCAGGTTCAGTATCACT+AGG 0.547225 2_1:-3893177 None:intergenic
TATGCCGCTGCAGCTGCTGG+TGG 0.547820 2_1:+3896576 Msa0188690:CDS
TGTTGAACACTCAAGGGTGC+AGG 0.547851 2_1:+3896431 Msa0188690:CDS
GGACTTGATTATCAAATGTA+GGG 0.548379 2_1:+3893596 Msa0188690:CDS
AAGAGATGCAATAATGTCAA+AGG 0.548581 2_1:-3896160 None:intergenic
TCCTATTCTCAAACAAGGCA+AGG 0.549766 2_1:+3896639 Msa0188690:CDS
CTTCTGAGCTTGGTAATGAC+AGG 0.550457 2_1:+3893742 Msa0188690:CDS
AAGATATAGGTAGATAGATA+CGG 0.551424 2_1:-3892770 None:intergenic
CATAAAGGTTGATGATTCTG+TGG 0.552363 2_1:+3894127 Msa0188690:CDS
GAAGGACAAAATCAAGGAAG+AGG 0.552869 2_1:+3896230 Msa0188690:CDS
ACGCTTTGCATCATGAACAT+TGG 0.554176 2_1:-3896004 None:intergenic
GCGGGTAGAAGTATCTCCGT+GGG 0.555993 2_1:-3896808 None:intergenic
CTTCTAAGGTAGCCTTGAAG+AGG 0.561694 2_1:+3894381 Msa0188690:CDS
CAAAGAGATTCTGGAAGCCA+GGG 0.563451 2_1:+3893887 Msa0188690:CDS
TACGGGATACGGTGGAGGAA+GGG 0.564228 2_1:+3896671 Msa0188690:CDS
GGGGTAACAACAAACGGAGC+AGG 0.564444 2_1:-3894530 None:intergenic
TCTGGAAGCCAGGGGCAGGA+AGG 0.564829 2_1:+3893896 Msa0188690:CDS
AATGCTGAAGGACAAAATCA+AGG 0.565908 2_1:+3896224 Msa0188690:CDS
CCTGCCCCAACCGATCCAAA+CGG 0.567390 2_1:+3893192 Msa0188690:CDS
AGTGAGAAACAAACATTCAC+GGG 0.567914 2_1:+3896066 Msa0188690:CDS
CAGTGAGAAACAAACATTCA+CGG 0.568401 2_1:+3896065 Msa0188690:CDS
GCATTATCGTTCAGTCAAGC+TGG 0.568957 2_1:+3896693 Msa0188690:CDS
GTGTCCCATGTGATCTCACT+AGG 0.569429 2_1:-3893849 None:intergenic
GGACGTACGGGATACGGTGG+AGG 0.570293 2_1:+3896666 Msa0188690:CDS
CGGAAAATAATGCACCCAGT+TGG 0.571165 2_1:-3896405 None:intergenic
ATCATATGATTCTTTGAGCG+TGG 0.572793 2_1:+3896284 Msa0188690:CDS
GGAGCATCGCCATCATCACC+AGG 0.573601 2_1:-3893768 None:intergenic
TGCCTCCAAGGCGAAGAGAT+GGG 0.574902 2_1:+3896547 Msa0188690:CDS
ATCATGTTATGGCTGCCACA+AGG 0.575690 2_1:+3896109 Msa0188690:CDS
CACTGACCTCAAGCAAGCGT+CGG 0.576302 2_1:-3896047 None:intergenic
GGGAGAGTCCTGAGAGTGAG+GGG 0.577170 2_1:+3893616 Msa0188690:CDS
GAGGCGGCTATCAGAATTCA+GGG 0.577279 2_1:+3896754 Msa0188690:CDS
GCTGCTGGAGGTTCCCAACA+TGG 0.578381 2_1:+3895978 Msa0188690:CDS
AGAATCATATGATGAAGAGA+AGG 0.578443 2_1:-3896274 None:intergenic
GTATCACTGATATACAAATA+CGG 0.579558 2_1:+3894614 Msa0188690:CDS
TCTCAACATATTCACGTGTG+TGG 0.579942 2_1:-3894277 None:intergenic
TGAACTTTATTCTGGTGGAC+GGG 0.580196 2_1:+3894859 Msa0188690:CDS
AAAAGCCTAGTGAGATCACA+TGG 0.585381 2_1:+3893844 Msa0188690:CDS
AAACATTGGGAATTTGGGGA+AGG 0.586416 2_1:-3897037 None:intergenic
TACATCTGCTATGCTGCTGG+AGG 0.586476 2_1:+3895966 Msa0188690:CDS
AGGTTCAATGATCTCATCAT+CGG 0.587424 2_1:-3893679 None:intergenic
CTATTCTAGAGGACGAGGAA+CGG 0.587856 2_1:+3896728 Msa0188690:CDS
GTTGCTTCATAAACCTCATG+CGG 0.588345 2_1:-3894425 None:intergenic
GCTACAGAAGCAAGGTTAGG+CGG 0.590150 2_1:+3896510 Msa0188690:CDS
TGAGAATGAAACTAAGAAAG+GGG 0.591503 2_1:+3894157 Msa0188690:CDS
GTCAAGCACGAACTCCCCTA+AGG 0.592556 2_1:-3896839 None:intergenic
ACCACCACCAGCAGCTGCAG+CGG 0.592682 2_1:-3896580 None:intergenic
TTCTAAGGTAGCCTTGAAGA+GGG 0.593307 2_1:+3894382 Msa0188690:CDS
GAATTTCCGACGCTTGCTTG+AGG 0.593870 2_1:+3896041 Msa0188690:CDS
AGAGCTACAGAAGCAAGGTT+AGG 0.594295 2_1:+3896507 Msa0188690:CDS
GTGAAGGAATTGCTTGCGCA+AGG 0.594439 2_1:+3894881 Msa0188690:CDS
ACTCATAAGCAACAGATCAC+GGG 0.595404 2_1:-3894711 None:intergenic
AGATAATGGAGAGATGAGTG+AGG 0.595500 2_1:+3894478 Msa0188690:CDS
AAGCAAGGTTAGGCGGCGGT+GGG 0.595912 2_1:+3896517 Msa0188690:CDS
CATTTACTACAAACCGCATG+AGG 0.596878 2_1:+3894412 Msa0188690:CDS
TGCTATCAAGATCAATGACT+GGG 0.597590 2_1:+3893344 Msa0188690:CDS
AGGAAAGGTTGGAAAGAAGA+CGG 0.598493 2_1:+3895890 Msa0188690:intron
GGGAGTGGCGGCTATTCTAG+AGG 0.598572 2_1:+3896717 Msa0188690:CDS
TCTCAAACAAGGCAAGGCAG+CGG 0.598804 2_1:+3896645 Msa0188690:CDS
TTTCCGCGCCACAAGTTCCG+GGG 0.599206 2_1:-3894549 None:intergenic
AGGGAGAGTCCTGAGAGTGA+GGG 0.600175 2_1:+3893615 Msa0188690:CDS
CGGAGATACTTCTACCCGCA+TGG 0.602013 2_1:+3896812 Msa0188690:CDS
TCTAGAGGACGAGGAACGGG+TGG 0.602993 2_1:+3896732 Msa0188690:CDS
TTGGCTGAGATGACCGTAGA+GGG 0.603596 2_1:+3894455 Msa0188690:CDS
ATGAAAGAGCTACAGAAGCA+AGG 0.604351 2_1:+3896502 Msa0188690:CDS
AGTCAAGCTGGTGGGAGTGG+CGG 0.604909 2_1:+3896705 Msa0188690:CDS
AATATCAGTGGGTTCATCGT+CGG 0.606448 2_1:-3893145 None:intergenic
CAGGAAGCCGGAGCCCGTGT+CGG 0.608070 2_1:+3893710 Msa0188690:CDS
GGCGGCTATTCTAGAGGACG+AGG 0.609346 2_1:+3896723 Msa0188690:CDS
ACAAGACAAGACAAGACAAG+AGG 0.610589 2_1:+3892857 Msa0188690:five_prime_UTR
AAGAATCTGGAAGTCATGGT+AGG 0.611325 2_1:-3893001 None:intergenic
AGGTTCATCATCAATATCAG+TGG 0.614512 2_1:-3893157 None:intergenic
GGGTCCTCCTGAAACTGTCA+GGG 0.614834 2_1:+3896086 Msa0188690:CDS
GAATTCAGGGAGGACTCAAG+GGG 0.615559 2_1:+3896767 Msa0188690:CDS
TTATTGCATCTCTTGATGTG+TGG 0.615728 2_1:+3896169 Msa0188690:CDS
ACTTGTCCTATTCTCAAACA+AGG 0.620485 2_1:+3896634 Msa0188690:CDS
ACAGAAGCAAGGTTAGGCGG+CGG 0.622574 2_1:+3896513 Msa0188690:CDS
GGTTCATCATCAATATCAGT+GGG 0.623181 2_1:-3893156 None:intergenic
CGCCGTGCTAGAAATGCTGA+AGG 0.624899 2_1:+3896212 Msa0188690:CDS
TCCATTAATAAGAACCCTTG+TGG 0.625098 2_1:-3896124 None:intergenic
TATTAGCAGAAGCCTGAGCA+AGG 0.625753 2_1:-3893485 None:intergenic
TCATGTTATGGCTGCCACAA+GGG 0.627218 2_1:+3896110 Msa0188690:CDS
TATCGTTCAGTCAAGCTGGT+GGG 0.636549 2_1:+3896697 Msa0188690:CDS
GAACGTCTTCAGGTGGCAGG+TGG 0.637601 2_1:+3896607 Msa0188690:CDS
TTATCGTTCAGTCAAGCTGG+TGG 0.639308 2_1:+3896696 Msa0188690:CDS
AAGAAAGGGGATGACTATGA+CGG 0.642172 2_1:+3894170 Msa0188690:CDS
GTGTTCATAGTATTGTCAGT+AGG 0.642718 2_1:+3896343 Msa0188690:CDS
GATGACAGTGACGATGATGA+TGG 0.643930 2_1:+3893246 Msa0188690:CDS
TCAACATATTCACGTGTGTG+GGG 0.645878 2_1:-3894275 None:intergenic
GAAGTTTCAGAATCCGACAC+GGG 0.650738 2_1:-3893723 None:intergenic
TATTAATGGAGATTTCCAGA+AGG 0.655339 2_1:+3896137 Msa0188690:CDS
AAAATGCGTGCAGAATATGC+TGG 0.655482 2_1:+3894073 Msa0188690:CDS
GGGGCAGGAAGGGAACTGGA+AGG 0.655940 2_1:+3893907 Msa0188690:CDS
GCAAGAAAATGTTCACCACA+TGG 0.657602 2_1:+3894739 Msa0188690:CDS
GGTAGTGGAACGTCTTCAGG+TGG 0.658306 2_1:+3896600 Msa0188690:CDS
TGCGGGTAGAAGTATCTCCG+TGG 0.660998 2_1:-3896809 None:intergenic
CTCCCCTAAGGCTAACCATG+CGG 0.664230 2_1:-3896827 None:intergenic
TCTACTTTGAGGGGACCCCA+CGG 0.665115 2_1:+3896792 Msa0188690:CDS
TTACCCCGGAACTTGTGGCG+CGG 0.666773 2_1:+3894546 Msa0188690:CDS
CAAACTCATCAAGAAGAGCA+TGG 0.667504 2_1:-3894682 None:intergenic
GATGTTAATCCAGGCCTCAG+TGG 0.669943 2_1:+3894026 Msa0188690:CDS
CAGTAGGATGATGATCAATG+AGG 0.670922 2_1:+3896359 Msa0188690:CDS
GGAGAGTCCTGAGAGTGAGG+GGG 0.672377 2_1:+3893617 Msa0188690:CDS
AGCGGACGTACGGGATACGG+TGG 0.674527 2_1:+3896663 Msa0188690:CDS
TGTGCAAGAACAACAAACTG+AGG 0.676475 2_1:-3894314 None:intergenic
GGCATATGCCCATAAATGTG+TGG 0.678845 2_1:+3894048 Msa0188690:CDS
GACGGACCCATTCATGTCTG+GGG 0.680909 2_1:+3894188 Msa0188690:CDS
TGAATATGTTGAGAGACTCA+GGG 0.682868 2_1:+3894286 Msa0188690:CDS
AGAAGTTTCAGAATCCGACA+CGG 0.685846 2_1:-3893724 None:intergenic
ATTGGCTGAGATGACCGTAG+AGG 0.686209 2_1:+3894454 Msa0188690:CDS
CTGACAATACTATGAACACG+AGG 0.689117 2_1:-3896339 None:intergenic
GCTGGAGGTTCCCAACATGG+CGG 0.693046 2_1:+3895981 Msa0188690:CDS
ATTCTTGATCTGATCAACAG+TGG 0.701566 2_1:-3893322 None:intergenic
AAAGAGATTCTGGAAGCCAG+GGG 0.701656 2_1:+3893888 Msa0188690:CDS
GCATCGCCATCATCACCAGG+AGG 0.707685 2_1:-3893765 None:intergenic
TGATCCCTGACAGTTTCAGG+AGG 0.717851 2_1:-3896090 None:intergenic
AATTCAGGGAGGACTCAAGG+GGG 0.722566 2_1:+3896768 Msa0188690:CDS
CGGGTAGAAGTATCTCCGTG+GGG 0.734112 2_1:-3896807 None:intergenic
AAAGCCTAGTGAGATCACAT+GGG 0.747188 2_1:+3893845 Msa0188690:CDS
GAAGAACAATAAGCAATACG+AGG 0.757858 2_1:+3893575 Msa0188690:CDS
TTATGGGCATATGCCCACTG+AGG 0.770132 2_1:-3894040 None:intergenic
GCGGCTATCAGAATTCAGGG+AGG 0.799750 2_1:+3896757 Msa0188690:CDS
TTTGTGTCGAAATGTCCATG+TGG 0.823137 2_1:-3894754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATAGAAAAAATAAA+AGG + chr2_1:3895112-3895131 Msa0188690:intron 10.0%
!! CAGAAATTAAATTTGATTAT+TGG + chr2_1:3895241-3895260 Msa0188690:intron 15.0%
!!! TATTTTCCTTTAATTTTCTA+TGG - chr2_1:3895422-3895441 None:intergenic 15.0%
!!! TAAATTTTTTTGAATTGAGT+GGG - chr2_1:3895493-3895512 None:intergenic 15.0%
!!! ATAAATTTTTTTGAATTGAG+TGG - chr2_1:3895494-3895513 None:intergenic 15.0%
!!! AAAAAATTTATTTTTGCCAT+TGG + chr2_1:3895503-3895522 Msa0188690:intron 15.0%
!! AAAAGAACATATTATTGCAT+TGG - chr2_1:3893096-3893115 None:intergenic 20.0%
!!! ATATGTTCTTTTCTATTGTT+AGG + chr2_1:3893104-3893123 Msa0188690:intron 20.0%
!!! TATGTTCTTTTCTATTGTTA+GGG + chr2_1:3893105-3893124 Msa0188690:intron 20.0%
!! ATCTATTTGAAAAAAATAGC+CGG - chr2_1:3894957-3894976 None:intergenic 20.0%
!! TGTCAATGTAAAGATAAATA+AGG - chr2_1:3895161-3895180 None:intergenic 20.0%
!! TATAATATTATTGCTCAACT+TGG + chr2_1:3895208-3895227 Msa0188690:intron 20.0%
!!! TGTTTTTGTTTTTGTTTCTA+AGG + chr2_1:3895304-3895323 Msa0188690:intron 20.0%
!!! TTTTATTTTCATCTTGTTAC+TGG + chr2_1:3895338-3895357 Msa0188690:intron 20.0%
!!! TTTATTTTCATCTTGTTACT+GGG + chr2_1:3895339-3895358 Msa0188690:intron 20.0%
!! TATAAGCCATAGAAAATTAA+AGG + chr2_1:3895413-3895432 Msa0188690:intron 20.0%
!!! AAATTTTTTTGAATTGAGTG+GGG - chr2_1:3895492-3895511 None:intergenic 20.0%
!!! CATACTTTATATTGGATTTT+TGG + chr2_1:3895771-3895790 Msa0188690:intron 20.0%
!! CTATTCTTTAATTATCTTTC+AGG + chr2_1:3895870-3895889 Msa0188690:intron 20.0%
!! AGATTTATATGCATATGATA+TGG - chr2_1:3895922-3895941 None:intergenic 20.0%
!! ATTAAGTGCATAATGATAAA+CGG - chr2_1:3896945-3896964 None:intergenic 20.0%
!!! ATGCATTTTTTTTTTTTGAG+AGG + chr2_1:3897109-3897128 Msa0188690:three_prime_UTR 20.0%
! AAGATATAGGTAGATAGATA+CGG - chr2_1:3892773-3892792 None:intergenic 25.0%
!!! CATTTTTTCCACACATTTAT+GGG - chr2_1:3894059-3894078 None:intergenic 25.0%
! AATCATCAACCTTTATGTTT+GGG - chr2_1:3894124-3894143 None:intergenic 25.0%
! ATGAGAATGAAACTAAGAAA+GGG + chr2_1:3894156-3894175 Msa0188690:CDS 25.0%
! GTATCACTGATATACAAATA+CGG + chr2_1:3894614-3894633 Msa0188690:CDS 25.0%
!!! GACACAAATACTTTTTAACA+GGG + chr2_1:3894769-3894788 Msa0188690:CDS 25.0%
! TCTATTTGAAAAAAATAGCC+GGG - chr2_1:3894956-3894975 None:intergenic 25.0%
!! CTTTATTAATGTACTTGTTG+TGG + chr2_1:3894991-3895010 Msa0188690:intron 25.0%
! AGAAAAAATAAAAGGTGATC+TGG + chr2_1:3895120-3895139 Msa0188690:intron 25.0%
!! TTATTTTCATCTTGTTACTG+GGG + chr2_1:3895340-3895359 Msa0188690:intron 25.0%
! TTTCTATGGCTTATACAATA+GGG - chr2_1:3895408-3895427 None:intergenic 25.0%
!! TTTTCTATGGCTTATACAAT+AGG - chr2_1:3895409-3895428 None:intergenic 25.0%
! TTTCAGTTATGCTAAAAGTA+AGG - chr2_1:3895555-3895574 None:intergenic 25.0%
!! TAATCGTAATCCGAAATTTT+GGG - chr2_1:3895717-3895736 None:intergenic 25.0%
!! ATAATCGTAATCCGAAATTT+TGG - chr2_1:3895718-3895737 None:intergenic 25.0%
! TAAAGGCTCATACTTTATAT+TGG + chr2_1:3895763-3895782 Msa0188690:intron 25.0%
! CTTTAATTATCTTTCAGGAA+AGG + chr2_1:3895875-3895894 Msa0188690:intron 25.0%
! AAGCTGTAATACTGAATAAA+TGG - chr2_1:3896877-3896896 None:intergenic 25.0%
!! GAATATTGTTTTCTGTCTTT+CGG + chr2_1:3896912-3896931 Msa0188690:intron 25.0%
! ACAAAAAACATTGGGAATTT+GGG - chr2_1:3897045-3897064 None:intergenic 25.0%
! AACAAAAAACATTGGGAATT+TGG - chr2_1:3897046-3897065 None:intergenic 25.0%
! TTGGAACAACAAAAAACATT+GGG - chr2_1:3897053-3897072 None:intergenic 25.0%
! ATTGGAACAACAAAAAACAT+TGG - chr2_1:3897054-3897073 None:intergenic 25.0%
! CCAAAAATCAGAATAAAGAT+TGG - chr2_1:3897072-3897091 None:intergenic 25.0%
!! CCAATCTTTATTCTGATTTT+TGG + chr2_1:3897069-3897088 Msa0188690:three_prime_UTR 25.0%
!!! ATCTTTATTCTGATTTTTGG+CGG + chr2_1:3897072-3897091 Msa0188690:three_prime_UTR 25.0%
TACAAAATCGGGAAAGATAT+AGG - chr2_1:3892786-3892805 None:intergenic 30.0%
!! GCTAATCTGTTGTTGATTTA+GGG + chr2_1:3892812-3892831 Msa0188690:five_prime_UTR 30.0%
AAAGTCGAGAATTAAGGTTA+TGG - chr2_1:3892891-3892910 None:intergenic 30.0%
AACAACAAAGTCGAGAATTA+AGG - chr2_1:3892897-3892916 None:intergenic 30.0%
!! TAGTATTTGCTTTTACCGTT+TGG - chr2_1:3893210-3893229 None:intergenic 30.0%
AAAAGCAAATACTACGTTGA+TGG + chr2_1:3893216-3893235 Msa0188690:CDS 30.0%
! GTAAAGATTAGGGATCTTTT+GGG - chr2_1:3893436-3893455 None:intergenic 30.0%
! TGTAAAGATTAGGGATCTTT+TGG - chr2_1:3893437-3893456 None:intergenic 30.0%
!!! TTTTTGCTTCATTGAGTTGA+AGG - chr2_1:3893550-3893569 None:intergenic 30.0%
AGGACTTGATTATCAAATGT+AGG + chr2_1:3893595-3893614 Msa0188690:CDS 30.0%
GGACTTGATTATCAAATGTA+GGG + chr2_1:3893596-3893615 Msa0188690:CDS 30.0%
! TTTAGCAACTTTTGTTAGGA+AGG - chr2_1:3893955-3893974 None:intergenic 30.0%
!!! GTGTTTTAGCAACTTTTGTT+AGG - chr2_1:3893959-3893978 None:intergenic 30.0%
!!! GCATTTTTTCCACACATTTA+TGG - chr2_1:3894060-3894079 None:intergenic 30.0%
GAATCATCAACCTTTATGTT+TGG - chr2_1:3894125-3894144 None:intergenic 30.0%
GATGAGAATGAAACTAAGAA+AGG + chr2_1:3894155-3894174 Msa0188690:CDS 30.0%
TGAGAATGAAACTAAGAAAG+GGG + chr2_1:3894157-3894176 Msa0188690:CDS 30.0%
AGATTTCAAAGCTTCTTCTA+AGG + chr2_1:3894367-3894386 Msa0188690:CDS 30.0%
TTATGAAGCAACGAGAAAAT+TGG + chr2_1:3894436-3894455 Msa0188690:CDS 30.0%
TGATACTAACACATCCATTA+AGG - chr2_1:3894600-3894619 None:intergenic 30.0%
!! CGACACAAATACTTTTTAAC+AGG + chr2_1:3894768-3894787 Msa0188690:CDS 30.0%
TGTTTGTCTGAACTTTATTC+TGG + chr2_1:3894851-3894870 Msa0188690:CDS 30.0%
ATCTTTACATTGACATTGAG+TGG + chr2_1:3895166-3895185 Msa0188690:intron 30.0%
TCTTTACATTGACATTGAGT+GGG + chr2_1:3895167-3895186 Msa0188690:intron 30.0%
! TATTTTCATCTTGTTACTGG+GGG + chr2_1:3895341-3895360 Msa0188690:intron 30.0%
!! TATTTTTGCCATTGGTAGTT+CGG + chr2_1:3895511-3895530 Msa0188690:intron 30.0%
TAGCATAACTGAAATTGATG+AGG + chr2_1:3895561-3895580 Msa0188690:intron 30.0%
AGCATAACTGAAATTGATGA+GGG + chr2_1:3895562-3895581 Msa0188690:intron 30.0%
ATGTTCAAACCCCAAAATTT+CGG + chr2_1:3895704-3895723 Msa0188690:intron 30.0%
! AATCGTAATCCGAAATTTTG+GGG - chr2_1:3895716-3895735 None:intergenic 30.0%
GTGAATACCACAAACAATAA+AGG + chr2_1:3895746-3895765 Msa0188690:intron 30.0%
!! GGATTTTTGGAAATCCTAAT+CGG + chr2_1:3895784-3895803 Msa0188690:intron 30.0%
AATTATCTTTCAGGAAAGGT+TGG + chr2_1:3895879-3895898 Msa0188690:intron 30.0%
TATTAATGGAGATTTCCAGA+AGG + chr2_1:3896137-3896156 Msa0188690:CDS 30.0%
AAGAGATGCAATAATGTCAA+AGG - chr2_1:3896163-3896182 None:intergenic 30.0%
ATGATGAAGAGAAGGTAAAT+AGG - chr2_1:3896269-3896288 None:intergenic 30.0%
AGAATCATATGATGAAGAGA+AGG - chr2_1:3896277-3896296 None:intergenic 30.0%
TAGATAATTTCTCAGTCAAC+TGG - chr2_1:3896467-3896486 None:intergenic 30.0%
TATGCACTTAATCTAGATTC+TGG + chr2_1:3896953-3896972 Msa0188690:three_prime_UTR 30.0%
CAAAAAACATTGGGAATTTG+GGG - chr2_1:3897044-3897063 None:intergenic 30.0%
!! GGCTAATCTGTTGTTGATTT+AGG + chr2_1:3892811-3892830 Msa0188690:five_prime_UTR 35.0%
GTAAAAGAATCTGGAAGTCA+TGG - chr2_1:3893008-3893027 None:intergenic 35.0%
AGATACCTGGTAAAAGAATC+TGG - chr2_1:3893017-3893036 None:intergenic 35.0%
GAGTAAGAAATGAAGATACC+TGG - chr2_1:3893030-3893049 None:intergenic 35.0%
! GTTCTTTTCTATTGTTAGGG+TGG + chr2_1:3893108-3893127 Msa0188690:intron 35.0%
GGTTCATCATCAATATCAGT+GGG - chr2_1:3893159-3893178 None:intergenic 35.0%
AGGTTCATCATCAATATCAG+TGG - chr2_1:3893160-3893179 None:intergenic 35.0%
!! TTTGCTTTTACCGTTTGGAT+CGG - chr2_1:3893205-3893224 None:intergenic 35.0%
! CAGATTTAACAACACGCTTT+TGG - chr2_1:3893272-3893291 None:intergenic 35.0%
!! AGATAAGCGTTTTGATGAGA+TGG + chr2_1:3893296-3893315 Msa0188690:CDS 35.0%
ATTCTTGATCTGATCAACAG+TGG - chr2_1:3893325-3893344 None:intergenic 35.0%
ATGCTATCAAGATCAATGAC+TGG + chr2_1:3893343-3893362 Msa0188690:CDS 35.0%
TGCTATCAAGATCAATGACT+GGG + chr2_1:3893344-3893363 Msa0188690:CDS 35.0%
GATCCCTAATCTTTACATCA+AGG + chr2_1:3893440-3893459 Msa0188690:CDS 35.0%
GAGCCTTGATGTAAAGATTA+GGG - chr2_1:3893446-3893465 None:intergenic 35.0%
AGAGCCTTGATGTAAAGATT+AGG - chr2_1:3893447-3893466 None:intergenic 35.0%
GAAGAACAATAAGCAATACG+AGG + chr2_1:3893575-3893594 Msa0188690:CDS 35.0%
AGGTTCAATGATCTCATCAT+CGG - chr2_1:3893682-3893701 None:intergenic 35.0%
AAAAGCTTAGCAAGAAAGAC+AGG + chr2_1:3893799-3893818 Msa0188690:CDS 35.0%
CAAGAAGTTCAAAGAGATTC+TGG + chr2_1:3893878-3893897 Msa0188690:CDS 35.0%
!! CATAAAGGTTGATGATTCTG+TGG + chr2_1:3894127-3894146 Msa0188690:CDS 35.0%
TGAATATGTTGAGAGACTCA+GGG + chr2_1:3894286-3894305 Msa0188690:CDS 35.0%
CAATGCTTTCAAGATATTCC+TGG - chr2_1:3894346-3894365 None:intergenic 35.0%
! CAGGAATATCTTGAAAGCAT+TGG + chr2_1:3894344-3894363 Msa0188690:CDS 35.0%
! TGAGGAGTTAAAAGGTTTTG+AGG + chr2_1:3894496-3894515 Msa0188690:CDS 35.0%
!!! ATTAAGGTCCTGCTATTTTC+CGG - chr2_1:3894584-3894603 None:intergenic 35.0%
! AGTTAGGTCTATGTGCTTTT+CGG + chr2_1:3894801-3894820 Msa0188690:CDS 35.0%
TTGTCTGAACTTTATTCTGG+TGG + chr2_1:3894854-3894873 Msa0188690:CDS 35.0%
! CTGGAGTCTTTTCATGATAA+CGG - chr2_1:3894919-3894938 None:intergenic 35.0%
CAAATAGATGTCTCATAGCA+TGG + chr2_1:3894968-3894987 Msa0188690:intron 35.0%
ATCAGATACAATGTAAGCAC+CGG - chr2_1:3895028-3895047 None:intergenic 35.0%
!! TTTCTTTAGAGCAGTGACAT+TGG - chr2_1:3895076-3895095 None:intergenic 35.0%
CTTTACATTGACATTGAGTG+GGG + chr2_1:3895168-3895187 Msa0188690:intron 35.0%
! GTGGGGATTAATCAATTTTG+AGG + chr2_1:3895185-3895204 Msa0188690:intron 35.0%
TGTTAAACTCATAGAGCATG+AGG + chr2_1:3895446-3895465 Msa0188690:intron 35.0%
GTTAAACTCATAGAGCATGA+GGG + chr2_1:3895447-3895466 Msa0188690:intron 35.0%
TTAAACTCATAGAGCATGAG+GGG + chr2_1:3895448-3895467 Msa0188690:intron 35.0%
AAAAGTAAGGCACACTTTGT+TGG - chr2_1:3895542-3895561 None:intergenic 35.0%
! CATGCTCTTATTTCACTACA+TGG - chr2_1:3895612-3895631 None:intergenic 35.0%
! TCACAGAAAGTTTTCTGTCT+TGG + chr2_1:3895680-3895699 Msa0188690:intron 35.0%
GTATGAGCCTTTATTGTTTG+TGG - chr2_1:3895756-3895775 None:intergenic 35.0%
! TTTGCCGTATTTCTATCTAC+CGG + chr2_1:3895812-3895831 Msa0188690:intron 35.0%
CAGTGAGAAACAAACATTCA+CGG + chr2_1:3896065-3896084 Msa0188690:CDS 35.0%
AGTGAGAAACAAACATTCAC+GGG + chr2_1:3896066-3896085 Msa0188690:CDS 35.0%
TCCATTAATAAGAACCCTTG+TGG - chr2_1:3896127-3896146 None:intergenic 35.0%
TTATTGCATCTCTTGATGTG+TGG + chr2_1:3896169-3896188 Msa0188690:CDS 35.0%
AATGCTGAAGGACAAAATCA+AGG + chr2_1:3896224-3896243 Msa0188690:CDS 35.0%
ATCATATGATTCTTTGAGCG+TGG + chr2_1:3896284-3896303 Msa0188690:CDS 35.0%
GTGTTCATAGTATTGTCAGT+AGG + chr2_1:3896343-3896362 Msa0188690:CDS 35.0%
ACTTGTCCTATTCTCAAACA+AGG + chr2_1:3896634-3896653 Msa0188690:CDS 35.0%
ATTAGCCGCTGCTACAAAAT+CGG - chr2_1:3892798-3892817 None:intergenic 40.0%
TTGTCTTGTCTTGTCTTGTC+TGG - chr2_1:3892856-3892875 None:intergenic 40.0%
ACAAGACAAGACAAGACAAG+AGG + chr2_1:3892857-3892876 Msa0188690:five_prime_UTR 40.0%
AAGAATCTGGAAGTCATGGT+AGG - chr2_1:3893004-3893023 None:intergenic 40.0%
! GACTTCCAGATTCTTTTACC+AGG + chr2_1:3893009-3893028 Msa0188690:CDS 40.0%
! AATATCAGTGGGTTCATCGT+CGG - chr2_1:3893148-3893167 None:intergenic 40.0%
! TTTTACCGTTTGGATCGGTT+GGG - chr2_1:3893200-3893219 None:intergenic 40.0%
!! CTTCATTGAGTTGAAGGCTT+TGG - chr2_1:3893544-3893563 None:intergenic 40.0%
AGAAGTTTCAGAATCCGACA+CGG - chr2_1:3893727-3893746 None:intergenic 40.0%
!! GATTCTGAAACTTCTGAGCT+TGG + chr2_1:3893732-3893751 Msa0188690:CDS 40.0%
! TTGCTAAGCTTTTGATCCCA+AGG - chr2_1:3893792-3893811 None:intergenic 40.0%
! TAGCAAGAAAGACAGGCTTT+TGG + chr2_1:3893806-3893825 Msa0188690:CDS 40.0%
AAAAGCCTAGTGAGATCACA+TGG + chr2_1:3893844-3893863 Msa0188690:CDS 40.0%
AAAGCCTAGTGAGATCACAT+GGG + chr2_1:3893845-3893864 Msa0188690:CDS 40.0%
GCTCAGTTTGATGTTAATCC+AGG + chr2_1:3894017-3894036 Msa0188690:CDS 40.0%
AAAATGCGTGCAGAATATGC+TGG + chr2_1:3894073-3894092 Msa0188690:CDS 40.0%
AAGAAAGGGGATGACTATGA+CGG + chr2_1:3894170-3894189 Msa0188690:CDS 40.0%
CTGCAAGCTCTTGAAAAACT+CGG - chr2_1:3894246-3894265 None:intergenic 40.0%
TCAACATATTCACGTGTGTG+GGG - chr2_1:3894278-3894297 None:intergenic 40.0%
CTCAACATATTCACGTGTGT+GGG - chr2_1:3894279-3894298 None:intergenic 40.0%
TCTCAACATATTCACGTGTG+TGG - chr2_1:3894280-3894299 None:intergenic 40.0%
GTGAATATGTTGAGAGACTC+AGG + chr2_1:3894285-3894304 Msa0188690:CDS 40.0%
TGTGCAAGAACAACAAACTG+AGG - chr2_1:3894317-3894336 None:intergenic 40.0%
!! TTCTAAGGTAGCCTTGAAGA+GGG + chr2_1:3894382-3894401 Msa0188690:CDS 40.0%
AATGAGTTCAACCCTCTTCA+AGG - chr2_1:3894396-3894415 None:intergenic 40.0%
CATTTACTACAAACCGCATG+AGG + chr2_1:3894412-3894431 Msa0188690:CDS 40.0%
GTTGCTTCATAAACCTCATG+CGG - chr2_1:3894428-3894447 None:intergenic 40.0%
!! AGATAATGGAGAGATGAGTG+AGG + chr2_1:3894478-3894497 Msa0188690:CDS 40.0%
GAGATGAGTGAGGAGTTAAA+AGG + chr2_1:3894488-3894507 Msa0188690:CDS 40.0%
!!! TTAAGGTCCTGCTATTTTCC+GGG - chr2_1:3894583-3894602 None:intergenic 40.0%
GGAAAATAGCAGGACCTTAA+TGG + chr2_1:3894583-3894602 Msa0188690:CDS 40.0%
CAAACTCATCAAGAAGAGCA+TGG - chr2_1:3894685-3894704 None:intergenic 40.0%
ACTCATAAGCAACAGATCAC+GGG - chr2_1:3894714-3894733 None:intergenic 40.0%
GACTCATAAGCAACAGATCA+CGG - chr2_1:3894715-3894734 None:intergenic 40.0%
GCAAGAAAATGTTCACCACA+TGG + chr2_1:3894739-3894758 Msa0188690:CDS 40.0%
TTTGTGTCGAAATGTCCATG+TGG - chr2_1:3894757-3894776 None:intergenic 40.0%
! GTTAGGTCTATGTGCTTTTC+GGG + chr2_1:3894802-3894821 Msa0188690:CDS 40.0%
CTGAACTTTATTCTGGTGGA+CGG + chr2_1:3894858-3894877 Msa0188690:CDS 40.0%
! TGAACTTTATTCTGGTGGAC+GGG + chr2_1:3894859-3894878 Msa0188690:CDS 40.0%
TCATGAAAAGACTCCAGAAC+AGG + chr2_1:3894922-3894941 Msa0188690:CDS 40.0%
GAATTGAGTGGGGTAAGAAA+AGG - chr2_1:3895482-3895501 None:intergenic 40.0%
! TTGCCGTATTTCTATCTACC+GGG + chr2_1:3895813-3895832 Msa0188690:intron 40.0%
TGACCCGGTAGATAGAAATA+CGG - chr2_1:3895819-3895838 None:intergenic 40.0%
AGGAAAGGTTGGAAAGAAGA+CGG + chr2_1:3895890-3895909 Msa0188690:intron 40.0%
GCATATAAATCTTGAGCTCC+TGG + chr2_1:3895930-3895949 Msa0188690:CDS 40.0%
!! ATGTAAGATGCACTGATTCC+AGG - chr2_1:3895951-3895970 None:intergenic 40.0%
ACGCTTTGCATCATGAACAT+TGG - chr2_1:3896007-3896026 None:intergenic 40.0%
AACTGTCAGGGATCATGTTA+TGG + chr2_1:3896098-3896117 Msa0188690:CDS 40.0%
GCCACAAGGGTTCTTATTAA+TGG + chr2_1:3896123-3896142 Msa0188690:CDS 40.0%
CAATAATGTCAAAGGCCTTC+TGG - chr2_1:3896155-3896174 None:intergenic 40.0%
GAAGGACAAAATCAAGGAAG+AGG + chr2_1:3896230-3896249 Msa0188690:CDS 40.0%
CTGACAATACTATGAACACG+AGG - chr2_1:3896342-3896361 None:intergenic 40.0%
CAGTAGGATGATGATCAATG+AGG + chr2_1:3896359-3896378 Msa0188690:CDS 40.0%
TCCGAAATGTTGAACACTCA+AGG + chr2_1:3896424-3896443 Msa0188690:CDS 40.0%
CCCTTGAGTGTTCAACATTT+CGG - chr2_1:3896428-3896447 None:intergenic 40.0%
CCGAAATGTTGAACACTCAA+GGG + chr2_1:3896425-3896444 Msa0188690:CDS 40.0%
ATGAAAGAGCTACAGAAGCA+AGG + chr2_1:3896502-3896521 Msa0188690:CDS 40.0%
TCCTATTCTCAAACAAGGCA+AGG + chr2_1:3896639-3896658 Msa0188690:CDS 40.0%
AACATTGGGAATTTGGGGAA+GGG - chr2_1:3897039-3897058 None:intergenic 40.0%
AAACATTGGGAATTTGGGGA+AGG - chr2_1:3897040-3897059 None:intergenic 40.0%
! CTTTCCCGATTTTGTAGCAG+CGG + chr2_1:3892790-3892809 Msa0188690:five_prime_UTR 45.0%
TTAGCCGCTGCTACAAAATC+GGG - chr2_1:3892797-3892816 None:intergenic 45.0%
GTCTTGTCTTGTCTGGAAGA+TGG - chr2_1:3892849-3892868 None:intergenic 45.0%
TTTACCGTTTGGATCGGTTG+GGG - chr2_1:3893199-3893218 None:intergenic 45.0%
! CTTTTACCGTTTGGATCGGT+TGG - chr2_1:3893201-3893220 None:intergenic 45.0%
GATGACAGTGACGATGATGA+TGG + chr2_1:3893246-3893265 Msa0188690:CDS 45.0%
GCTTGAAGATTTCCTTGCTC+AGG + chr2_1:3893473-3893492 Msa0188690:CDS 45.0%
TATTAGCAGAAGCCTGAGCA+AGG - chr2_1:3893488-3893507 None:intergenic 45.0%
TGCTCAGGCTTCTGCTAATA+AGG + chr2_1:3893488-3893507 Msa0188690:CDS 45.0%
! TTGAAGGCTTTGGCATTGCT+GGG - chr2_1:3893534-3893553 None:intergenic 45.0%
TCATTGAACCTGATCAGCTC+AGG + chr2_1:3893691-3893710 Msa0188690:CDS 45.0%
GAAGTTTCAGAATCCGACAC+GGG - chr2_1:3893726-3893745 None:intergenic 45.0%
!! CTTCTGAGCTTGGTAATGAC+AGG + chr2_1:3893742-3893761 Msa0188690:CDS 45.0%
! TCAAAGAGATTCTGGAAGCC+AGG + chr2_1:3893886-3893905 Msa0188690:CDS 45.0%
! CAAAGAGATTCTGGAAGCCA+GGG + chr2_1:3893887-3893906 Msa0188690:CDS 45.0%
! AAAGAGATTCTGGAAGCCAG+GGG + chr2_1:3893888-3893907 Msa0188690:CDS 45.0%
! GCTGCAGATTCTTTTCAGTG+TGG + chr2_1:3893989-3894008 Msa0188690:CDS 45.0%
ATGTTAATCCAGGCCTCAGT+GGG + chr2_1:3894027-3894046 Msa0188690:CDS 45.0%
GGCATATGCCCATAAATGTG+TGG + chr2_1:3894048-3894067 Msa0188690:CDS 45.0%
AAGTTGCCCCAGACATGAAT+GGG - chr2_1:3894197-3894216 None:intergenic 45.0%
TAAGTTGCCCCAGACATGAA+TGG - chr2_1:3894198-3894217 None:intergenic 45.0%
TGTTCTTGCACAGAATGTCC+AGG + chr2_1:3894325-3894344 Msa0188690:CDS 45.0%
!! CTTCTAAGGTAGCCTTGAAG+AGG + chr2_1:3894381-3894400 Msa0188690:CDS 45.0%
ATGACCGTAGAGGGAGATAA+TGG + chr2_1:3894464-3894483 Msa0188690:CDS 45.0%
CTCTCCATTATCTCCCTCTA+CGG - chr2_1:3894471-3894490 None:intergenic 45.0%
AGTTCCGGGGTAACAACAAA+CGG - chr2_1:3894539-3894558 None:intergenic 45.0%
AACAGGGCTATGTCACAGTT+AGG + chr2_1:3894785-3894804 Msa0188690:CDS 45.0%
!!! GTCTATGTGCTTTTCGGGTT+GGG + chr2_1:3894807-3894826 Msa0188690:CDS 45.0%
CCAGAACAGGTACTAAATCC+CGG + chr2_1:3894935-3894954 Msa0188690:intron 45.0%
TGTTGTGGTCAAGTGCATAC+CGG + chr2_1:3895006-3895025 Msa0188690:intron 45.0%
TTTCATCTTGTTACTGGGGG+AGG + chr2_1:3895344-3895363 Msa0188690:intron 45.0%
TTCATCTTGTTACTGGGGGA+GGG + chr2_1:3895345-3895364 Msa0188690:intron 45.0%
! TTGCCATTGGTAGTTCGGTT+TGG + chr2_1:3895516-3895535 Msa0188690:intron 45.0%
! TACGGCAAAAGTTGCCGATT+AGG - chr2_1:3895801-3895820 None:intergenic 45.0%
GATTAAACCCTCACATGACC+CGG - chr2_1:3895834-3895853 None:intergenic 45.0%
TCTTACATCTGCTATGCTGC+TGG + chr2_1:3895963-3895982 Msa0188690:CDS 45.0%
ACATGATCCCTGACAGTTTC+AGG - chr2_1:3896096-3896115 None:intergenic 45.0%
ATCATGTTATGGCTGCCACA+AGG + chr2_1:3896109-3896128 Msa0188690:CDS 45.0%
TCATGTTATGGCTGCCACAA+GGG + chr2_1:3896110-3896129 Msa0188690:CDS 45.0%
!! GTCCTTCAGCATTTCTAGCA+CGG - chr2_1:3896217-3896236 None:intergenic 45.0%
!! AAATCAAGGAAGAGGCGCTT+AGG + chr2_1:3896238-3896257 Msa0188690:CDS 45.0%
CGGAAAATAATGCACCCAGT+TGG - chr2_1:3896408-3896427 None:intergenic 45.0%
AGAGCTACAGAAGCAAGGTT+AGG + chr2_1:3896507-3896526 Msa0188690:CDS 45.0%
!! GCCTTGCCTTGTTTGAGAAT+AGG - chr2_1:3896643-3896662 None:intergenic 45.0%
GCATTATCGTTCAGTCAAGC+TGG + chr2_1:3896693-3896712 Msa0188690:CDS 45.0%
TTATCGTTCAGTCAAGCTGG+TGG + chr2_1:3896696-3896715 Msa0188690:CDS 45.0%
TATCGTTCAGTCAAGCTGGT+GGG + chr2_1:3896697-3896716 Msa0188690:CDS 45.0%
! CTATTCTAGAGGACGAGGAA+CGG + chr2_1:3896728-3896747 Msa0188690:CDS 45.0%
! TATTCTAGAGGACGAGGAAC+GGG + chr2_1:3896729-3896748 Msa0188690:CDS 45.0%
AGAATTCAGGGAGGACTCAA+GGG + chr2_1:3896766-3896785 Msa0188690:CDS 45.0%
TCAAGGGGGTTCTACTTTGA+GGG + chr2_1:3896782-3896801 Msa0188690:CDS 45.0%
ACATTGGGAATTTGGGGAAG+GGG - chr2_1:3897038-3897057 None:intergenic 45.0%
GCTGGGACTCATCTTCTTCT+TGG - chr2_1:3893517-3893536 None:intergenic 50.0%
! GTTGAAGGCTTTGGCATTGC+TGG - chr2_1:3893535-3893554 None:intergenic 50.0%
GGAAAAGGATGACGAGGATG+AGG + chr2_1:3893638-3893657 Msa0188690:CDS 50.0%
!! TGATGATGGCGATGCTCCTT+GGG + chr2_1:3893773-3893792 Msa0188690:CDS 50.0%
GTGTCCCATGTGATCTCACT+AGG - chr2_1:3893852-3893871 None:intergenic 50.0%
GGGAACTGGAAGGTTTGAAC+AGG + chr2_1:3893917-3893936 Msa0188690:CDS 50.0%
AGAATCTGCAGCTTCTGAGC+AGG - chr2_1:3893981-3894000 None:intergenic 50.0%
GATGTTAATCCAGGCCTCAG+TGG + chr2_1:3894026-3894045 Msa0188690:CDS 50.0%
TTATGGGCATATGCCCACTG+AGG - chr2_1:3894043-3894062 None:intergenic 50.0%
CGTGCAGCACCCAAACATAA+AGG + chr2_1:3894112-3894131 Msa0188690:CDS 50.0%
!! ATGACGGACCCATTCATGTC+TGG + chr2_1:3894186-3894205 Msa0188690:CDS 50.0%
! TGACGGACCCATTCATGTCT+GGG + chr2_1:3894187-3894206 Msa0188690:CDS 50.0%
ATTGGCTGAGATGACCGTAG+AGG + chr2_1:3894454-3894473 Msa0188690:CDS 50.0%
TTGGCTGAGATGACCGTAGA+GGG + chr2_1:3894455-3894474 Msa0188690:CDS 50.0%
!! TGCTCCGTTTGTTGTTACCC+CGG + chr2_1:3894532-3894551 Msa0188690:CDS 50.0%
TGTTGTTACCCCGGAACTTG+TGG + chr2_1:3894541-3894560 Msa0188690:CDS 50.0%
!!! CTGCTATTTTCCGGGAAGGT+GGG - chr2_1:3894575-3894594 None:intergenic 50.0%
!!! GGTCTATGTGCTTTTCGGGT+TGG + chr2_1:3894806-3894825 Msa0188690:CDS 50.0%
! TTATTCTGGTGGACGGGTGA+AGG + chr2_1:3894865-3894884 Msa0188690:CDS 50.0%
GTGAAGGAATTGCTTGCGCA+AGG + chr2_1:3894881-3894900 Msa0188690:CDS 50.0%
CCGGGATTTAGTACCTGTTC+TGG - chr2_1:3894938-3894957 None:intergenic 50.0%
TCATCTTGTTACTGGGGGAG+GGG + chr2_1:3895346-3895365 Msa0188690:intron 50.0%
TGGCCAAACCGAACTACCAA+TGG - chr2_1:3895522-3895541 None:intergenic 50.0%
TCTATCTACCGGGTCATGTG+AGG + chr2_1:3895823-3895842 Msa0188690:intron 50.0%
CTATCTACCGGGTCATGTGA+GGG + chr2_1:3895824-3895843 Msa0188690:intron 50.0%
TACATCTGCTATGCTGCTGG+AGG + chr2_1:3895966-3895985 Msa0188690:CDS 50.0%
TGAACATTGGCCGCCATGTT+GGG - chr2_1:3895994-3896013 None:intergenic 50.0%
ATGAACATTGGCCGCCATGT+TGG - chr2_1:3895995-3896014 None:intergenic 50.0%
GAATTTCCGACGCTTGCTTG+AGG + chr2_1:3896041-3896060 Msa0188690:CDS 50.0%
TGATCCCTGACAGTTTCAGG+AGG - chr2_1:3896093-3896112 None:intergenic 50.0%
ATGAGGAGCTTCATGCAAGC+TGG + chr2_1:3896376-3896395 Msa0188690:CDS 50.0%
TGAGGAGCTTCATGCAAGCT+GGG + chr2_1:3896377-3896396 Msa0188690:CDS 50.0%
! TGTTGAACACTCAAGGGTGC+AGG + chr2_1:3896431-3896450 Msa0188690:CDS 50.0%
GCTACAGAAGCAAGGTTAGG+CGG + chr2_1:3896510-3896529 Msa0188690:CDS 50.0%
TCTCAAACAAGGCAAGGCAG+CGG + chr2_1:3896645-3896664 Msa0188690:CDS 50.0%
GAGGCGGCTATCAGAATTCA+GGG + chr2_1:3896754-3896773 Msa0188690:CDS 50.0%
CAGAATTCAGGGAGGACTCA+AGG + chr2_1:3896765-3896784 Msa0188690:CDS 50.0%
GAATTCAGGGAGGACTCAAG+GGG + chr2_1:3896767-3896786 Msa0188690:CDS 50.0%
AATTCAGGGAGGACTCAAGG+GGG + chr2_1:3896768-3896787 Msa0188690:CDS 50.0%
CTCAAGGGGGTTCTACTTTG+AGG + chr2_1:3896781-3896800 Msa0188690:CDS 50.0%
CAAGGGGGTTCTACTTTGAG+GGG + chr2_1:3896783-3896802 Msa0188690:CDS 50.0%
!! TACCCGCATGGTTAGCCTTA+GGG + chr2_1:3896824-3896843 Msa0188690:CDS 50.0%
CATTGGGAATTTGGGGAAGG+GGG - chr2_1:3897037-3897056 None:intergenic 50.0%
GGGGCAGGTTCAGTATCACT+AGG - chr2_1:3893180-3893199 None:intergenic 55.0%
TAGGGAGAGTCCTGAGAGTG+AGG + chr2_1:3893614-3893633 Msa0188690:CDS 55.0%
AGGGAGAGTCCTGAGAGTGA+GGG + chr2_1:3893615-3893634 Msa0188690:CDS 55.0%
TCCTGAGAGTGAGGGGGAAA+AGG + chr2_1:3893623-3893642 Msa0188690:CDS 55.0%
! TCCTTTTCCCCCTCACTCTC+AGG - chr2_1:3893627-3893646 None:intergenic 55.0%
TGAGGGGGAAAAGGATGACG+AGG + chr2_1:3893632-3893651 Msa0188690:CDS 55.0%
ACCTGATCAGCTCAGGAAGC+CGG + chr2_1:3893698-3893717 Msa0188690:CDS 55.0%
!! CTTGGTAATGACAGGCCTCC+TGG + chr2_1:3893750-3893769 Msa0188690:CDS 55.0%
!! GTGATGATGGCGATGCTCCT+TGG + chr2_1:3893772-3893791 Msa0188690:CDS 55.0%
GACGGACCCATTCATGTCTG+GGG + chr2_1:3894188-3894207 Msa0188690:CDS 55.0%
GGGGTAACAACAAACGGAGC+AGG - chr2_1:3894533-3894552 None:intergenic 55.0%
!!! CCTGCTATTTTCCGGGAAGG+TGG - chr2_1:3894576-3894595 None:intergenic 55.0%
CCACCTTCCCGGAAAATAGC+AGG + chr2_1:3894573-3894592 Msa0188690:CDS 55.0%
!!! GGTCCTGCTATTTTCCGGGA+AGG - chr2_1:3894579-3894598 None:intergenic 55.0%
!!! ATGTGCTTTTCGGGTTGGGC+TGG + chr2_1:3894811-3894830 Msa0188690:CDS 55.0%
CATCTTGTTACTGGGGGAGG+GGG + chr2_1:3895347-3895366 Msa0188690:intron 55.0%
ATAGAGCATGAGGGGAAGCG+TGG + chr2_1:3895456-3895475 Msa0188690:intron 55.0%
CACTGACCTCAAGCAAGCGT+CGG - chr2_1:3896050-3896069 None:intergenic 55.0%
GGGTCCTCCTGAAACTGTCA+GGG + chr2_1:3896086-3896105 Msa0188690:CDS 55.0%
CGCCGTGCTAGAAATGCTGA+AGG + chr2_1:3896212-3896231 Msa0188690:CDS 55.0%
CAAGCTGGGATCAGCCAACT+GGG + chr2_1:3896391-3896410 Msa0188690:CDS 55.0%
! ACACTCAAGGGTGCAGGCTT+TGG + chr2_1:3896437-3896456 Msa0188690:CDS 55.0%
ACAGAAGCAAGGTTAGGCGG+CGG + chr2_1:3896513-3896532 Msa0188690:CDS 55.0%
TGCCTCCAAGGCGAAGAGAT+GGG + chr2_1:3896547-3896566 Msa0188690:CDS 55.0%
!! GGTGGTAGTGGAACGTCTTC+AGG + chr2_1:3896597-3896616 Msa0188690:CDS 55.0%
!! GGTAGTGGAACGTCTTCAGG+TGG + chr2_1:3896600-3896619 Msa0188690:CDS 55.0%
TACGGGATACGGTGGAGGAA+GGG + chr2_1:3896671-3896690 Msa0188690:CDS 55.0%
TTCAGTCAAGCTGGTGGGAG+TGG + chr2_1:3896702-3896721 Msa0188690:CDS 55.0%
GGAGGCGGCTATCAGAATTC+AGG + chr2_1:3896753-3896772 Msa0188690:CDS 55.0%
GCGGCTATCAGAATTCAGGG+AGG + chr2_1:3896757-3896776 Msa0188690:CDS 55.0%
! TCTACTTTGAGGGGACCCCA+CGG + chr2_1:3896792-3896811 Msa0188690:CDS 55.0%
!! CGGGTAGAAGTATCTCCGTG+GGG - chr2_1:3896810-3896829 None:intergenic 55.0%
!! GCGGGTAGAAGTATCTCCGT+GGG - chr2_1:3896811-3896830 None:intergenic 55.0%
!! TGCGGGTAGAAGTATCTCCG+TGG - chr2_1:3896812-3896831 None:intergenic 55.0%
CGGAGATACTTCTACCCGCA+TGG + chr2_1:3896812-3896831 Msa0188690:CDS 55.0%
!! CTACCCGCATGGTTAGCCTT+AGG + chr2_1:3896823-3896842 Msa0188690:CDS 55.0%
!! ACCCGCATGGTTAGCCTTAG+GGG + chr2_1:3896825-3896844 Msa0188690:CDS 55.0%
TCCCCTAAGGCTAACCATGC+GGG - chr2_1:3896829-3896848 None:intergenic 55.0%
CTCCCCTAAGGCTAACCATG+CGG - chr2_1:3896830-3896849 None:intergenic 55.0%
GTCAAGCACGAACTCCCCTA+AGG - chr2_1:3896842-3896861 None:intergenic 55.0%
CCTGCCCCAACCGATCCAAA+CGG + chr2_1:3893192-3893211 Msa0188690:CDS 60.0%
GGGAGAGTCCTGAGAGTGAG+GGG + chr2_1:3893616-3893635 Msa0188690:CDS 60.0%
GGAGAGTCCTGAGAGTGAGG+GGG + chr2_1:3893617-3893636 Msa0188690:CDS 60.0%
TCCGGCTTCCTGAGCTGATC+AGG - chr2_1:3893702-3893721 None:intergenic 60.0%
TCAGAATCCGACACGGGCTC+CGG - chr2_1:3893720-3893739 None:intergenic 60.0%
! GACAGGCCTCCTGGTGATGA+TGG + chr2_1:3893759-3893778 Msa0188690:CDS 60.0%
GCATCGCCATCATCACCAGG+AGG - chr2_1:3893768-3893787 None:intergenic 60.0%
!! GGAGCATCGCCATCATCACC+AGG - chr2_1:3893771-3893790 None:intergenic 60.0%
! AGATTCTGGAAGCCAGGGGC+AGG + chr2_1:3893892-3893911 Msa0188690:CDS 60.0%
TTACCCCGGAACTTGTGGCG+CGG + chr2_1:3894546-3894565 Msa0188690:CDS 60.0%
TTTCCGCGCCACAAGTTCCG+GGG - chr2_1:3894552-3894571 None:intergenic 60.0%
GTTTCCGCGCCACAAGTTCC+GGG - chr2_1:3894553-3894572 None:intergenic 60.0%
GGTTTCCGCGCCACAAGTTC+CGG - chr2_1:3894554-3894573 None:intergenic 60.0%
!! GGGCTGGTTTCTGAAGCGCA+TGG + chr2_1:3894827-3894846 Msa0188690:CDS 60.0%
GCTGCTGGAGGTTCCCAACA+TGG + chr2_1:3895978-3895997 Msa0188690:CDS 60.0%
GCTGGAGGTTCCCAACATGG+CGG + chr2_1:3895981-3896000 Msa0188690:CDS 60.0%
CGGGTCCTCCTGAAACTGTC+AGG + chr2_1:3896085-3896104 Msa0188690:CDS 60.0%
GCAAGCTGGGATCAGCCAAC+TGG + chr2_1:3896390-3896409 Msa0188690:CDS 60.0%
AAGCAAGGTTAGGCGGCGGT+GGG + chr2_1:3896517-3896536 Msa0188690:CDS 60.0%
!! GTGGGTTGGATCTGCCTCCA+AGG + chr2_1:3896535-3896554 Msa0188690:CDS 60.0%
CTGCCTCCAAGGCGAAGAGA+TGG + chr2_1:3896546-3896565 Msa0188690:CDS 60.0%
TGCCCATCTCTTCGCCTTGG+AGG - chr2_1:3896552-3896571 None:intergenic 60.0%
TCCAAGGCGAAGAGATGGGC+AGG + chr2_1:3896551-3896570 Msa0188690:CDS 60.0%
TCCTGCCCATCTCTTCGCCT+TGG - chr2_1:3896555-3896574 None:intergenic 60.0%
GATTATGCCGCTGCAGCTGC+TGG + chr2_1:3896573-3896592 Msa0188690:CDS 60.0%
GTGGAACGTCTTCAGGTGGC+AGG + chr2_1:3896604-3896623 Msa0188690:CDS 60.0%
GAACGTCTTCAGGTGGCAGG+TGG + chr2_1:3896607-3896626 Msa0188690:CDS 60.0%
AAGGCAAGGCAGCGGACGTA+CGG + chr2_1:3896653-3896672 Msa0188690:CDS 60.0%
GTACGGGATACGGTGGAGGA+AGG + chr2_1:3896670-3896689 Msa0188690:CDS 60.0%
AGTCAAGCTGGTGGGAGTGG+CGG + chr2_1:3896705-3896724 Msa0188690:CDS 60.0%
GGGAGTGGCGGCTATTCTAG+AGG + chr2_1:3896717-3896736 Msa0188690:CDS 60.0%
! GGCGGCTATTCTAGAGGACG+AGG + chr2_1:3896723-3896742 Msa0188690:CDS 60.0%
TCTAGAGGACGAGGAACGGG+TGG + chr2_1:3896732-3896751 Msa0188690:CDS 60.0%
CCGTTTGGATCGGTTGGGGC+AGG - chr2_1:3893195-3893214 None:intergenic 65.0%
TCTGGAAGCCAGGGGCAGGA+AGG + chr2_1:3893896-3893915 Msa0188690:CDS 65.0%
CTGGAAGCCAGGGGCAGGAA+GGG + chr2_1:3893897-3893916 Msa0188690:CDS 65.0%
TCCAGTTCCCTTCCTGCCCC+TGG - chr2_1:3893907-3893926 None:intergenic 65.0%
GGGGCAGGAAGGGAACTGGA+AGG + chr2_1:3893907-3893926 Msa0188690:CDS 65.0%
GGCATATGCCCACTGAGGCC+TGG - chr2_1:3894038-3894057 None:intergenic 65.0%
GAAGCAAGGTTAGGCGGCGG+TGG + chr2_1:3896516-3896535 Msa0188690:CDS 65.0%
AAGGTTAGGCGGCGGTGGGT+TGG + chr2_1:3896521-3896540 Msa0188690:CDS 65.0%
TATGCCGCTGCAGCTGCTGG+TGG + chr2_1:3896576-3896595 Msa0188690:CDS 65.0%
ACCACCACCAGCAGCTGCAG+CGG - chr2_1:3896583-3896602 None:intergenic 65.0%
!! GCAGCTGCTGGTGGTGGTAG+TGG + chr2_1:3896585-3896604 Msa0188690:CDS 65.0%
AGGCAAGGCAGCGGACGTAC+GGG + chr2_1:3896654-3896673 Msa0188690:CDS 65.0%
GGCAGCGGACGTACGGGATA+CGG + chr2_1:3896660-3896679 Msa0188690:CDS 65.0%
AGCGGACGTACGGGATACGG+TGG + chr2_1:3896663-3896682 Msa0188690:CDS 65.0%
GGACGTACGGGATACGGTGG+AGG + chr2_1:3896666-3896685 Msa0188690:CDS 65.0%
AGAGGACGAGGAACGGGTGG+AGG + chr2_1:3896735-3896754 Msa0188690:CDS 65.0%
CAGGAAGCCGGAGCCCGTGT+CGG + chr2_1:3893710-3893729 Msa0188690:CDS 70.0%
GCCAGGGGCAGGAAGGGAAC+TGG + chr2_1:3893903-3893922 Msa0188690:CDS 70.0%
GGCGCGGAAACCCACCTTCC+CGG + chr2_1:3894562-3894581 Msa0188690:CDS 70.0%
GGACGAGGAACGGGTGGAGG+CGG + chr2_1:3896738-3896757 Msa0188690:CDS 70.0%
GCCGCTGCAGCTGCTGGTGG+TGG + chr2_1:3896579-3896598 Msa0188690:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 3892770 3897135 3892770 ID=Msa0188690;Name=Msa0188690
chr2_1 mRNA 3892770 3897135 3892770 ID=Msa0188690-mRNA-1;Parent=Msa0188690;Name=Msa0188690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=117|1|1|1|0.5|0.4|5|249|936
chr2_1 exon 3892770 3892878 3892770 ID=Msa0188690-mRNA-1:exon:1671;Parent=Msa0188690-mRNA-1
chr2_1 exon 3892999 3893030 3892999 ID=Msa0188690-mRNA-1:exon:1672;Parent=Msa0188690-mRNA-1
chr2_1 exon 3893126 3894943 3893126 ID=Msa0188690-mRNA-1:exon:1673;Parent=Msa0188690-mRNA-1
chr2_1 exon 3895892 3896908 3895892 ID=Msa0188690-mRNA-1:exon:1674;Parent=Msa0188690-mRNA-1
chr2_1 exon 3896935 3897135 3896935 ID=Msa0188690-mRNA-1:exon:1675;Parent=Msa0188690-mRNA-1
chr2_1 five_prime_UTR 3892770 3892878 3892770 ID=Msa0188690-mRNA-1:five_prime_utr;Parent=Msa0188690-mRNA-1
chr2_1 five_prime_UTR 3892999 3893006 3892999 ID=Msa0188690-mRNA-1:five_prime_utr;Parent=Msa0188690-mRNA-1
chr2_1 CDS 3893007 3893030 3893007 ID=Msa0188690-mRNA-1:cds;Parent=Msa0188690-mRNA-1
chr2_1 CDS 3893126 3894943 3893126 ID=Msa0188690-mRNA-1:cds;Parent=Msa0188690-mRNA-1
chr2_1 CDS 3895892 3896860 3895892 ID=Msa0188690-mRNA-1:cds;Parent=Msa0188690-mRNA-1
chr2_1 three_prime_UTR 3896861 3896908 3896861 ID=Msa0188690-mRNA-1:three_prime_utr;Parent=Msa0188690-mRNA-1
chr2_1 three_prime_UTR 3896935 3897135 3896935 ID=Msa0188690-mRNA-1:three_prime_utr;Parent=Msa0188690-mRNA-1
Gene Sequence

>Msa0188690

ATGACTTCCAGATTCTTTTACCAGGGTGGTGATCATAGTGATACCGACGATGAACCCACTGATATTGATGATGAACCTAGTGATACTGAACCTGCCCCAACCGATCCAAACGGTAAAAGCAAATACTACGTTGATGGTAATGCTGATGACAGTGACGATGATGATGGCCAAAAGCGTGTTGTTAAATCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTCGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCTAATCTTTACATCAAGGCTCTTGTTATGCTTGAAGATTTCCTTGCTCAGGCTTCTGCTAATAAGGATGCCAAGAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGTAGGGAGAGTCCTGAGAGTGAGGGGGAAAAGGATGACGAGGATGAGGACTCTGACGAATACGAGACCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCCGTGTCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAACTAGATGAGAATGAAACTAAGAAAGGGGATGACTATGACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCGCATGAGGTTTATGAAGCAACGAGAAAATTGGCTGAGATGACCGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATACAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTCGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAGGTTCCCAACATGGCGGCCAATGTTCATGATGCAAAGCGTAAGATCATCAGTAAGAATTTCCGACGCTTGCTTGAGGTCAGTGAGAAACAAACATTCACGGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGATGTGTGGAAATTTGTGAAAAATCGAGACGCCGTGCTAGAAATGCTGAAGGACAAAATCAAGGAAGAGGCGCTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTGAGCGTGGTTCAGCTCACAAATTTTTTCGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTATTTTCCGAAATGTTGAACACTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATTCTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGAAGAGATGGGCAGGATTATGCCGCTGCAGCTGCTGGTGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGCGGACGTACGGGATACGGTGGAGGAAGGGCATTATCGTTCAGTCAAGCTGGTGGGAGTGGCGGCTATTCTAGAGGACGAGGAACGGGTGGAGGCGGCTATCAGAATTCAGGGAGGACTCAAGGGGGTTCTACTTTGAGGGGACCCCACGGAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA
Protein sequence

>Msa0188690

MTSRFFYQGGDHSDTDDEPTDIDDEPSDTEPAPTDPNGKSKYYVDGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDDEDEDSDEYETDDEIIEPDQLRKPEPVSDSETSELGNDRPPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYDGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEELKGFEDTRIPAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYDSLSVVQLTNFFDLSLPRVHSIVSRMMINEELHASWDQPTGCIIFRNVEHSRVQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTGGGGYQNSGRTQGGSTLRGPHGDTSTRMVSLRGVRA*