Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908870 | RHN45450.1 | 95.455 | 176 | 8 | 0 | 31 | 206 | 6 | 181 | 1.79e-116 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069500 | Msa0908870 | 0.824394 | 8.267523e-54 | -8.615850e-47 |
| Msa0697990 | Msa0908870 | 0.840372 | 9.044973e-58 | -8.615850e-47 |
| Msa0908830 | Msa0908870 | 0.873379 | 1.538766e-67 | -8.615850e-47 |
| Msa0908840 | Msa0908870 | 0.862282 | 5.657969e-64 | -8.615850e-47 |
| Msa0908850 | Msa0908870 | 0.907156 | 6.866841e-81 | -8.615850e-47 |
| Msa0908870 | Msa0908920 | 0.830916 | 2.243352e-55 | -8.615850e-47 |
| Msa0908870 | Msa0908930 | 0.883853 | 3.155788e-71 | -8.615850e-47 |
| Msa0908870 | Msa0919990 | 0.807216 | 5.631987e-50 | -8.615850e-47 |
| Msa0908870 | Msa0920060 | 0.851921 | 6.476683e-61 | -8.615850e-47 |
| Msa0908870 | Msa0944900 | 0.965607 | 7.985429e-125 | -8.615850e-47 |
| Msa0908870 | Msa0944920 | 0.894011 | 3.681470e-75 | -8.615850e-47 |
| Msa0908870 | Msa0944930 | 0.846340 | 2.310456e-59 | -8.615850e-47 |
| Msa0908870 | Msa0944940 | 0.858073 | 1.058087e-62 | -8.615850e-47 |
| Msa0908870 | Msa0944990 | 0.864232 | 1.410480e-64 | -8.615850e-47 |
| Msa0908870 | Msa0983170 | 0.853011 | 3.167177e-61 | -8.615850e-47 |
| Msa0908870 | Msa0983180 | 0.858966 | 5.728255e-63 | -8.615850e-47 |
| Msa0908870 | Msa0983190 | 0.904782 | 8.559298e-80 | -8.615850e-47 |
| Msa0908870 | Msa0983210 | 0.960461 | 1.388971e-118 | -8.615850e-47 |
| Msa0908870 | Msa0983220 | 0.830771 | 2.433619e-55 | -8.615850e-47 |
| Msa0908870 | Msa0983260 | 0.865936 | 4.111682e-65 | -8.615850e-47 |
| Msa0908870 | Msa0983300 | 0.872820 | 2.369942e-67 | -8.615850e-47 |
| Msa0908870 | Msa0983320 | 0.849603 | 2.908145e-60 | -8.615850e-47 |
| Msa0908870 | Msa0983350 | 0.858140 | 1.010496e-62 | -8.615850e-47 |
| Msa0908870 | Msa0983360 | 0.808349 | 3.235673e-50 | -8.615850e-47 |
| Msa0908870 | Msa0983460 | 0.900270 | 8.663845e-78 | -8.615850e-47 |
| Msa0908870 | Msa0983490 | 0.839951 | 1.165452e-57 | -8.615850e-47 |
| Msa0908870 | Msa0983500 | 0.950830 | 7.302459e-109 | -8.615850e-47 |
| Msa0908870 | Msa0983520 | 0.887838 | 1.003951e-72 | -8.615850e-47 |
| Msa0908870 | Msa0983530 | 0.847743 | 9.534000e-60 | -8.615850e-47 |
| Msa0908870 | Msa0983540 | 0.846649 | 1.901604e-59 | -8.615850e-47 |
| Msa0908870 | Msa1228620 | 0.827607 | 1.425107e-54 | -8.615850e-47 |
| Msa0908870 | Msa1391970 | 0.856254 | 3.641744e-62 | -8.615850e-47 |
| Msa0908870 | Msa1392010 | 0.846548 | 2.026865e-59 | -8.615850e-47 |
| Msa0908870 | Msa1392030 | 0.871300 | 7.589959e-67 | -8.615850e-47 |
| Msa0908870 | Msa1392120 | 0.892948 | 9.911854e-75 | -8.615850e-47 |
| Msa0908870 | Msa1392160 | 0.889129 | 3.193100e-73 | -8.615850e-47 |
| Msa0908870 | Msa1453860 | 0.810148 | 1.331565e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908870 | MtrunA17_MTg0491251 | 98.544 | 206 | 3 | 0 | 1 | 206 | 8 | 213 | 9.43e-147 | 407 |
| Msa0908870 | MtrunA17_Chr7g0231341 | 95.455 | 176 | 8 | 0 | 31 | 206 | 6 | 181 | 1.65e-120 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTACTCGGCTCGGGTTC+GGG | 0.146792 | 6_2:-9940923 | Msa0908870:CDS |
| AAGCCGACGCCGACCCATTT+TGG | 0.210676 | 6_2:+9940739 | None:intergenic |
| CTCTTTGGATGTATCCTTCT+GGG | 0.227156 | 6_2:-9940839 | Msa0908870:CDS |
| CCTCTTTGGATGTATCCTTC+TGG | 0.235353 | 6_2:-9940840 | Msa0908870:CDS |
| AGACTTCGTTGCAAATAAAT+TGG | 0.238736 | 6_2:-9940619 | Msa0908870:CDS |
| CCCGCCGCTCCTATCCAAAA+TGG | 0.239934 | 6_2:-9940753 | Msa0908870:CDS |
| CTCTTTACTCGGCTCGGGTT+CGG | 0.247183 | 6_2:-9940924 | Msa0908870:CDS |
| TCAAAGAATGTCTAATTCTT+TGG | 0.276750 | 6_2:-9941057 | None:intergenic |
| TCAATAGAAATGCCAAAATA+AGG | 0.312304 | 6_2:+9941009 | None:intergenic |
| CGTAGCGCTTGCTCATAAAT+TGG | 0.318064 | 6_2:+9940573 | None:intergenic |
| AACCTCCTCTTTACTCGGCT+CGG | 0.370554 | 6_2:-9940930 | Msa0908870:CDS |
| ATTGGACCCTGCGGCTGCCC+CGG | 0.373068 | 6_2:+9940591 | None:intergenic |
| GATAGGAGCGGCGGGTCCGC+CGG | 0.375170 | 6_2:+9940761 | None:intergenic |
| GTTTAGAGACCTGCTGAAAA+AGG | 0.379768 | 6_2:+9940950 | None:intergenic |
| TATCCTTCTGGGGCTGATGC+TGG | 0.380202 | 6_2:-9940828 | Msa0908870:CDS |
| AGCGGCGGGTCCGCCGGGGC+GGG | 0.390016 | 6_2:+9940767 | None:intergenic |
| TATGGTTTCGCGGCCGGAGC+TGG | 0.394590 | 6_2:+9940696 | None:intergenic |
| GGGAAGGCTGATGCTGCTCT+TGG | 0.402499 | 6_2:+9940787 | None:intergenic |
| GCGGGTCCGCCGGGGCGGGA+AGG | 0.403262 | 6_2:+9940771 | None:intergenic |
| CTTTACTCGGCTCGGGTTCG+GGG | 0.407970 | 6_2:-9940922 | Msa0908870:CDS |
| GTGCCGAGGAAATCCCTCTT+TGG | 0.408347 | 6_2:-9940854 | Msa0908870:CDS |
| TTGGACCCTGCGGCTGCCCC+GGG | 0.438206 | 6_2:+9940592 | None:intergenic |
| GGAAGACCCGGGGCAGCCGC+AGG | 0.439885 | 6_2:-9940598 | Msa0908870:CDS |
| CCACTTTACTTTCAAAAGAT+CGG | 0.450190 | 6_2:+9940974 | None:intergenic |
| ACCTCCTCTTTACTCGGCTC+GGG | 0.456204 | 6_2:-9940929 | Msa0908870:CDS |
| TAGGAGCGGCGGGTCCGCCG+GGG | 0.472146 | 6_2:+9940763 | None:intergenic |
| TTCCGTGGAGCAGCCAGCTC+CGG | 0.472407 | 6_2:-9940709 | Msa0908870:CDS |
| GGCCGGAGCTGGCTGCTCCA+CGG | 0.474217 | 6_2:+9940707 | None:intergenic |
| CTCTAAACCTCCTCTTTACT+CGG | 0.475617 | 6_2:-9940935 | Msa0908870:CDS |
| TGCAAATAAATTGGAAGACC+CGG | 0.488016 | 6_2:-9940610 | Msa0908870:CDS |
| CAGCATCAGCCTTCCCGCCC+CGG | 0.489074 | 6_2:-9940780 | Msa0908870:CDS |
| CCGCCGCTCCTATCCAAAAT+GGG | 0.493631 | 6_2:-9940752 | Msa0908870:CDS |
| GGACGAACTTCAGCGCTGGC+TGG | 0.506906 | 6_2:-9940508 | Msa0908870:CDS |
| AGCGCTGGCTGGTTTCACTA+AGG | 0.509513 | 6_2:-9940497 | Msa0908870:CDS |
| AATACGATTGCCAAGGCGGC+CGG | 0.515316 | 6_2:+9940897 | None:intergenic |
| AGCTGAAGGAGGGCTATGTA+TGG | 0.518841 | 6_2:+9940678 | None:intergenic |
| CGAACCCGAGCCGAGTAAAG+AGG | 0.520061 | 6_2:+9940925 | None:intergenic |
| GCGCTGGCTGGTTTCACTAA+GGG | 0.521276 | 6_2:-9940496 | Msa0908870:CDS |
| GCTATGTATGGTTTCGCGGC+CGG | 0.522221 | 6_2:+9940690 | None:intergenic |
| GAGGGCTATGTATGGTTTCG+CGG | 0.534222 | 6_2:+9940686 | None:intergenic |
| AGCAAGCGCTACGCCTGGTA+TGG | 0.535586 | 6_2:-9940563 | Msa0908870:CDS |
| TTTACTCGGCTCGGGTTCGG+GGG | 0.543290 | 6_2:-9940921 | Msa0908870:CDS |
| TTATGAGCAAGCGCTACGCC+TGG | 0.557111 | 6_2:-9940568 | Msa0908870:CDS |
| CGCTCCTATCCAAAATGGGT+CGG | 0.568858 | 6_2:-9940748 | Msa0908870:CDS |
| GATCGATGGCAGTACTAACC+AGG | 0.569954 | 6_2:-9940529 | Msa0908870:CDS |
| GCAAATAAATTGGAAGACCC+GGG | 0.573068 | 6_2:-9940609 | Msa0908870:CDS |
| ATAGCCCTCCTTCAGCTAGA+GGG | 0.580354 | 6_2:-9940672 | Msa0908870:CDS |
| ACCAGGACGAACTTCAGCGC+TGG | 0.584629 | 6_2:-9940512 | Msa0908870:CDS |
| GAAGACCCGGGGCAGCCGCA+GGG | 0.585751 | 6_2:-9940597 | Msa0908870:CDS |
| GCCAGCGCTGAAGTTCGTCC+TGG | 0.586980 | 6_2:+9940511 | None:intergenic |
| TCTTTGGATGTATCCTTCTG+GGG | 0.587601 | 6_2:-9940838 | Msa0908870:CDS |
| TGGCTGCTCCACGGAACTAG+TGG | 0.588921 | 6_2:+9940716 | None:intergenic |
| AAGAAATACGATTGCCAAGG+CGG | 0.590719 | 6_2:+9940893 | None:intergenic |
| CAAAAGAAATACGATTGCCA+AGG | 0.602322 | 6_2:+9940890 | None:intergenic |
| AAAATGGATTTGTATTGTCG+GGG | 0.604607 | 6_2:+9940468 | None:intergenic |
| TCTCGAGTTCATACCATACC+AGG | 0.605945 | 6_2:+9940550 | None:intergenic |
| TGGTATGAACTCGAGATCGA+TGG | 0.622194 | 6_2:-9940543 | Msa0908870:CDS |
| CAGAAGGATACATCCAAAGA+GGG | 0.626664 | 6_2:+9940841 | None:intergenic |
| GCGAGCACTATTCAGTGCCG+AGG | 0.627117 | 6_2:-9940868 | Msa0908870:CDS |
| TAGCCCTCCTTCAGCTAGAG+GGG | 0.628752 | 6_2:-9940671 | Msa0908870:CDS |
| CATCCAAAGAGGGATTTCCT+CGG | 0.631260 | 6_2:+9940851 | None:intergenic |
| TATCCAAAATGGGTCGGCGT+CGG | 0.631571 | 6_2:-9940742 | Msa0908870:CDS |
| GAGCCAGCATCAGCCCCAGA+AGG | 0.632838 | 6_2:+9940825 | None:intergenic |
| CCAGAAGGATACATCCAAAG+AGG | 0.635005 | 6_2:+9940840 | None:intergenic |
| TGCTCATAAATTGGACCCTG+CGG | 0.637696 | 6_2:+9940582 | None:intergenic |
| CATAGCCCTCCTTCAGCTAG+AGG | 0.642446 | 6_2:-9940673 | Msa0908870:CDS |
| AGCCCTCCTTCAGCTAGAGG+GGG | 0.644919 | 6_2:-9940670 | Msa0908870:CDS |
| AAATGGATTTGTATTGTCGG+GGG | 0.651927 | 6_2:+9940469 | None:intergenic |
| ACCCGAGCCGAGTAAAGAGG+AGG | 0.667486 | 6_2:+9940928 | None:intergenic |
| CAAATAAATTGGAAGACCCG+GGG | 0.684347 | 6_2:-9940608 | Msa0908870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTCTTCCTTATTT+TGG | - | chr6_2:9940469-9940488 | Msa0908870:CDS | 20.0% |
| ! | TCAATAGAAATGCCAAAATA+AGG | + | chr6_2:9940484-9940503 | None:intergenic | 25.0% |
| !! | AAAAATGGATTTGTATTGTC+GGG | + | chr6_2:9941026-9941045 | None:intergenic | 25.0% |
| !! | CAAAAATGGATTTGTATTGT+CGG | + | chr6_2:9941027-9941046 | None:intergenic | 25.0% |
| CCACTTTACTTTCAAAAGAT+CGG | + | chr6_2:9940519-9940538 | None:intergenic | 30.0% | |
| AGACTTCGTTGCAAATAAAT+TGG | - | chr6_2:9940871-9940890 | Msa0908870:CDS | 30.0% | |
| ! | AAAATGGATTTGTATTGTCG+GGG | + | chr6_2:9941025-9941044 | None:intergenic | 30.0% |
| ! | CGACAATACAAATCCATTTT+TGG | - | chr6_2:9941025-9941044 | Msa0908870:CDS | 30.0% |
| !! | CCGATCTTTTGAAAGTAAAG+TGG | - | chr6_2:9940516-9940535 | Msa0908870:CDS | 35.0% |
| CAAAAGAAATACGATTGCCA+AGG | + | chr6_2:9940603-9940622 | None:intergenic | 35.0% | |
| TGCAAATAAATTGGAAGACC+CGG | - | chr6_2:9940880-9940899 | Msa0908870:CDS | 35.0% | |
| ! | AAATGGATTTGTATTGTCGG+GGG | + | chr6_2:9941024-9941043 | None:intergenic | 35.0% |
| !!! | TAAAGTGGACCTTTTTCAGC+AGG | - | chr6_2:9940531-9940550 | Msa0908870:CDS | 40.0% |
| GTTTAGAGACCTGCTGAAAA+AGG | + | chr6_2:9940543-9940562 | None:intergenic | 40.0% | |
| CTCTAAACCTCCTCTTTACT+CGG | - | chr6_2:9940555-9940574 | Msa0908870:CDS | 40.0% | |
| AAGAAATACGATTGCCAAGG+CGG | + | chr6_2:9940600-9940619 | None:intergenic | 40.0% | |
| CAGAAGGATACATCCAAAGA+GGG | + | chr6_2:9940652-9940671 | None:intergenic | 40.0% | |
| CTCTTTGGATGTATCCTTCT+GGG | - | chr6_2:9940651-9940670 | Msa0908870:CDS | 40.0% | |
| TCTTTGGATGTATCCTTCTG+GGG | - | chr6_2:9940652-9940671 | Msa0908870:CDS | 40.0% | |
| GCAAATAAATTGGAAGACCC+GGG | - | chr6_2:9940881-9940900 | Msa0908870:CDS | 40.0% | |
| CAAATAAATTGGAAGACCCG+GGG | - | chr6_2:9940882-9940901 | Msa0908870:CDS | 40.0% | |
| !!! | AATCCATTTTTGGCTTCTCC+CGG | - | chr6_2:9941035-9941054 | Msa0908870:CDS | 40.0% |
| CATCCAAAGAGGGATTTCCT+CGG | + | chr6_2:9940642-9940661 | None:intergenic | 45.0% | |
| CCAGAAGGATACATCCAAAG+AGG | + | chr6_2:9940653-9940672 | None:intergenic | 45.0% | |
| CCTCTTTGGATGTATCCTTC+TGG | - | chr6_2:9940650-9940669 | Msa0908870:CDS | 45.0% | |
| TGCTCATAAATTGGACCCTG+CGG | + | chr6_2:9940911-9940930 | None:intergenic | 45.0% | |
| CGTAGCGCTTGCTCATAAAT+TGG | + | chr6_2:9940920-9940939 | None:intergenic | 45.0% | |
| TCTCGAGTTCATACCATACC+AGG | + | chr6_2:9940943-9940962 | None:intergenic | 45.0% | |
| TGGTATGAACTCGAGATCGA+TGG | - | chr6_2:9940947-9940966 | Msa0908870:CDS | 45.0% | |
| !!! | ATCCATTTTTGGCTTCTCCC+GGG | - | chr6_2:9941036-9941055 | Msa0908870:CDS | 45.0% |
| AACCTCCTCTTTACTCGGCT+CGG | - | chr6_2:9940560-9940579 | Msa0908870:CDS | 50.0% | |
| ! | CGACCCATTTTGGATAGGAG+CGG | + | chr6_2:9940744-9940763 | None:intergenic | 50.0% |
| CGCTCCTATCCAAAATGGGT+CGG | - | chr6_2:9940742-9940761 | Msa0908870:CDS | 50.0% | |
| TATCCAAAATGGGTCGGCGT+CGG | - | chr6_2:9940748-9940767 | Msa0908870:CDS | 50.0% | |
| GAGGGCTATGTATGGTTTCG+CGG | + | chr6_2:9940807-9940826 | None:intergenic | 50.0% | |
| AGCTGAAGGAGGGCTATGTA+TGG | + | chr6_2:9940815-9940834 | None:intergenic | 50.0% | |
| ATAGCCCTCCTTCAGCTAGA+GGG | - | chr6_2:9940818-9940837 | Msa0908870:CDS | 50.0% | |
| GATCGATGGCAGTACTAACC+AGG | - | chr6_2:9940961-9940980 | Msa0908870:CDS | 50.0% | |
| !!! | TCCATTTTTGGCTTCTCCCG+GGG | - | chr6_2:9941037-9941056 | Msa0908870:CDS | 50.0% |
| ACCTCCTCTTTACTCGGCTC+GGG | - | chr6_2:9940561-9940580 | Msa0908870:CDS | 55.0% | |
| !! | CTCTTTACTCGGCTCGGGTT+CGG | - | chr6_2:9940566-9940585 | Msa0908870:CDS | 55.0% |
| !! | TCTTTACTCGGCTCGGGTTC+GGG | - | chr6_2:9940567-9940586 | Msa0908870:CDS | 55.0% |
| AATACGATTGCCAAGGCGGC+CGG | + | chr6_2:9940596-9940615 | None:intergenic | 55.0% | |
| GTGCCGAGGAAATCCCTCTT+TGG | - | chr6_2:9940636-9940655 | Msa0908870:CDS | 55.0% | |
| !! | TATCCTTCTGGGGCTGATGC+TGG | - | chr6_2:9940662-9940681 | Msa0908870:CDS | 55.0% |
| ! | CCATTTTGGATAGGAGCGGC+GGG | + | chr6_2:9940740-9940759 | None:intergenic | 55.0% |
| ! | CCCATTTTGGATAGGAGCGG+CGG | + | chr6_2:9940741-9940760 | None:intergenic | 55.0% |
| CCGCCGCTCCTATCCAAAAT+GGG | - | chr6_2:9940738-9940757 | Msa0908870:CDS | 55.0% | |
| ! | GACGCCGACCCATTTTGGAT+AGG | + | chr6_2:9940749-9940768 | None:intergenic | 55.0% |
| GCTATGTATGGTTTCGCGGC+CGG | + | chr6_2:9940803-9940822 | None:intergenic | 55.0% | |
| CATAGCCCTCCTTCAGCTAG+AGG | - | chr6_2:9940817-9940836 | Msa0908870:CDS | 55.0% | |
| TAGCCCTCCTTCAGCTAGAG+GGG | - | chr6_2:9940819-9940838 | Msa0908870:CDS | 55.0% | |
| TTATGAGCAAGCGCTACGCC+TGG | - | chr6_2:9940922-9940941 | Msa0908870:CDS | 55.0% | |
| !! | AGCGCTGGCTGGTTTCACTA+AGG | - | chr6_2:9940993-9941012 | Msa0908870:CDS | 55.0% |
| !! | GCGCTGGCTGGTTTCACTAA+GGG | - | chr6_2:9940994-9941013 | Msa0908870:CDS | 55.0% |
| !!! | CCATTTTTGGCTTCTCCCGG+GGG | - | chr6_2:9941038-9941057 | Msa0908870:CDS | 55.0% |
| !!! | CATTTTTGGCTTCTCCCGGG+GGG | - | chr6_2:9941039-9941058 | Msa0908870:CDS | 55.0% |
| ACCCGAGCCGAGTAAAGAGG+AGG | + | chr6_2:9940565-9940584 | None:intergenic | 60.0% | |
| CGAACCCGAGCCGAGTAAAG+AGG | + | chr6_2:9940568-9940587 | None:intergenic | 60.0% | |
| !! | CTTTACTCGGCTCGGGTTCG+GGG | - | chr6_2:9940568-9940587 | Msa0908870:CDS | 60.0% |
| !! | TTTACTCGGCTCGGGTTCGG+GGG | - | chr6_2:9940569-9940588 | Msa0908870:CDS | 60.0% |
| GCGAGCACTATTCAGTGCCG+AGG | - | chr6_2:9940622-9940641 | Msa0908870:CDS | 60.0% | |
| GGGAAGGCTGATGCTGCTCT+TGG | + | chr6_2:9940706-9940725 | None:intergenic | 60.0% | |
| CCCGCCGCTCCTATCCAAAA+TGG | - | chr6_2:9940737-9940756 | Msa0908870:CDS | 60.0% | |
| ! | AAGCCGACGCCGACCCATTT+TGG | + | chr6_2:9940754-9940773 | None:intergenic | 60.0% |
| ! | GTCGGCTTCCACTAGTTCCG+TGG | - | chr6_2:9940766-9940785 | Msa0908870:CDS | 60.0% |
| TGGCTGCTCCACGGAACTAG+TGG | + | chr6_2:9940777-9940796 | None:intergenic | 60.0% | |
| AGCCCTCCTTCAGCTAGAGG+GGG | - | chr6_2:9940820-9940839 | Msa0908870:CDS | 60.0% | |
| CTCCCCCTCTAGCTGAAGGA+GGG | + | chr6_2:9940825-9940844 | None:intergenic | 60.0% | |
| TCCTTCAGCTAGAGGGGGAG+CGG | - | chr6_2:9940825-9940844 | Msa0908870:CDS | 60.0% | |
| AGCAAGCGCTACGCCTGGTA+TGG | - | chr6_2:9940927-9940946 | Msa0908870:CDS | 60.0% | |
| ACCAGGACGAACTTCAGCGC+TGG | - | chr6_2:9940978-9940997 | Msa0908870:CDS | 60.0% | |
| CCCCCGGGAGAAGCCAAAAA+TGG | + | chr6_2:9941041-9941060 | None:intergenic | 60.0% | |
| GAGCCAGCATCAGCCCCAGA+AGG | + | chr6_2:9940668-9940687 | None:intergenic | 65.0% | |
| TTCCGTGGAGCAGCCAGCTC+CGG | - | chr6_2:9940781-9940800 | Msa0908870:CDS | 65.0% | |
| TATGGTTTCGCGGCCGGAGC+TGG | + | chr6_2:9940797-9940816 | None:intergenic | 65.0% | |
| GCTCCCCCTCTAGCTGAAGG+AGG | + | chr6_2:9940826-9940845 | None:intergenic | 65.0% | |
| TCCGCTCCCCCTCTAGCTGA+AGG | + | chr6_2:9940829-9940848 | None:intergenic | 65.0% | |
| ! | GCCAGCGCTGAAGTTCGTCC+TGG | + | chr6_2:9940982-9941001 | None:intergenic | 65.0% |
| !! | GGACGAACTTCAGCGCTGGC+TGG | - | chr6_2:9940982-9941001 | Msa0908870:CDS | 65.0% |
| CAGCATCAGCCTTCCCGCCC+CGG | - | chr6_2:9940710-9940729 | Msa0908870:CDS | 70.0% | |
| ATTGGACCCTGCGGCTGCCC+CGG | + | chr6_2:9940902-9940921 | None:intergenic | 70.0% | |
| !! | TCGGCTCGGGTTCGGGGGTC+CGG | - | chr6_2:9940574-9940593 | Msa0908870:CDS | 75.0% |
| CATCAGCCTTCCCGCCCCGG+CGG | - | chr6_2:9940713-9940732 | Msa0908870:CDS | 75.0% | |
| ATAGGAGCGGCGGGTCCGCC+GGG | + | chr6_2:9940731-9940750 | None:intergenic | 75.0% | |
| GATAGGAGCGGCGGGTCCGC+CGG | + | chr6_2:9940732-9940751 | None:intergenic | 75.0% | |
| GGCCGGAGCTGGCTGCTCCA+CGG | + | chr6_2:9940786-9940805 | None:intergenic | 75.0% | |
| GAAGACCCGGGGCAGCCGCA+GGG | - | chr6_2:9940893-9940912 | Msa0908870:CDS | 75.0% | |
| TTGGACCCTGCGGCTGCCCC+GGG | + | chr6_2:9940901-9940920 | None:intergenic | 75.0% | |
| ! | GTTCGGGGGTCCGGCCGCCT+TGG | - | chr6_2:9940583-9940602 | Msa0908870:CDS | 80.0% |
| ! | TAGGAGCGGCGGGTCCGCCG+GGG | + | chr6_2:9940730-9940749 | None:intergenic | 80.0% |
| ! | GGAAGACCCGGGGCAGCCGC+AGG | - | chr6_2:9940892-9940911 | Msa0908870:CDS | 80.0% |
| ! | GCGGGTCCGCCGGGGCGGGA+AGG | + | chr6_2:9940722-9940741 | None:intergenic | 90.0% |
| ! | AGCGGCGGGTCCGCCGGGGC+GGG | + | chr6_2:9940726-9940745 | None:intergenic | 90.0% |
| ! | GAGCGGCGGGTCCGCCGGGG+CGG | + | chr6_2:9940727-9940746 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 9940440 | 9941072 | 9940440 | ID=Msa0908870;Name=Msa0908870 |
| chr6_2 | mRNA | 9940440 | 9941072 | 9940440 | ID=Msa0908870-mRNA-1;Parent=Msa0908870;Name=Msa0908870-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|210 |
| chr6_2 | exon | 9940440 | 9941072 | 9940440 | ID=Msa0908870-mRNA-1:exon:2477;Parent=Msa0908870-mRNA-1 |
| chr6_2 | CDS | 9940440 | 9941072 | 9940440 | ID=Msa0908870-mRNA-1:cds;Parent=Msa0908870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
