Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069500 | Msa1453870 | 0.833048 | 6.669300e-56 | -8.615850e-47 |
| Msa1391970 | Msa1453870 | 0.906567 | 1.293142e-80 | -8.615850e-47 |
| Msa1391980 | Msa1453870 | 0.815940 | 7.146989e-52 | -8.615850e-47 |
| Msa1392030 | Msa1453870 | 0.814599 | 1.419155e-51 | -8.615850e-47 |
| Msa1392160 | Msa1453870 | 0.830704 | 2.527536e-55 | -8.615850e-47 |
| Msa1453860 | Msa1453870 | 0.836635 | 8.337219e-57 | -8.615850e-47 |
| Msa0983170 | Msa1453870 | 0.815269 | 1.008098e-51 | -8.615850e-47 |
| Msa0983190 | Msa1453870 | 0.820653 | 6.120655e-53 | -8.615850e-47 |
| Msa0983300 | Msa1453870 | 0.830666 | 2.582174e-55 | -8.615850e-47 |
| Msa0983350 | Msa1453870 | 0.906721 | 1.096606e-80 | -8.615850e-47 |
| Msa0983520 | Msa1453870 | 0.821239 | 4.487421e-53 | -8.615850e-47 |
| Msa0983540 | Msa1453870 | 0.808362 | 3.214645e-50 | -8.615850e-47 |
| Msa0908850 | Msa1453870 | 0.809737 | 1.632432e-50 | -8.615850e-47 |
| Msa0920000 | Msa1453870 | 0.817370 | 3.416448e-52 | -8.615850e-47 |
| Msa0920060 | Msa1453870 | 0.811369 | 7.245262e-51 | -8.615850e-47 |
| Msa0944900 | Msa1453870 | 0.800248 | 1.575417e-48 | -8.615850e-47 |
| Msa0944920 | Msa1453870 | 0.823013 | 1.740396e-53 | -8.615850e-47 |
| Msa0944940 | Msa1453870 | 0.804759 | 1.851113e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCCTTTCTTTAACAAAT+TGG | 0.214714 | tig0034911:-26324 | None:intergenic |
| ATGGCCGCGGCGATGGAATC+TGG | 0.262688 | tig0034911:+23843 | Msa1453870:CDS |
| GCTGGAGCTGCCACAGCTTA+TGG | 0.304281 | tig0034911:+23983 | Msa1453870:CDS |
| ATCCCTTTCTTTAACAAATT+GGG | 0.320797 | tig0034911:-26323 | None:intergenic |
| CCGCCCGCTTGGCGGGCGGC+AGG | 0.332763 | tig0034911:+24060 | Msa1453870:CDS |
| GCTCCTGCCGCCCGCCAAGC+GGG | 0.366253 | tig0034911:-24063 | None:intergenic |
| TCCTTACAGTTCTCTATGCC+GGG | 0.375787 | tig0034911:-24026 | None:intergenic |
| TGGCGGGCGGCAGGAGCTGC+GGG | 0.393725 | tig0034911:+24069 | Msa1453870:CDS |
| ATCCTTACAGTTCTCTATGC+CGG | 0.406330 | tig0034911:-24027 | None:intergenic |
| CAGGGGAATTGCAGTTTCAC+TGG | 0.408308 | tig0034911:+26355 | Msa1453870:CDS |
| TTGGCGGGCGGCAGGAGCTG+CGG | 0.413881 | tig0034911:+24068 | Msa1453870:CDS |
| TGTCTACTACCGTATCAGTT+TGG | 0.414989 | tig0034911:+26387 | Msa1453870:CDS |
| ATACCCAATTTGTTAAAGAA+AGG | 0.426291 | tig0034911:+26320 | Msa1453870:CDS |
| CAGCTTATGGCTAGAGCAAT+GGG | 0.447959 | tig0034911:+23996 | Msa1453870:CDS |
| AGCTCCAGCTCGAAACCAAA+GGG | 0.448212 | tig0034911:-23969 | None:intergenic |
| TACCCAATTTGTTAAAGAAA+GGG | 0.454404 | tig0034911:+26321 | Msa1453870:CDS |
| GGGCCCCTTTGGTTTCGAGC+TGG | 0.465740 | tig0034911:+23965 | Msa1453870:CDS |
| CTGCAATTCCCCTGCGGAGT+CGG | 0.468714 | tig0034911:-26346 | None:intergenic |
| GAACCAGATGGCCGCGGCGA+TGG | 0.481859 | tig0034911:+23836 | None:intergenic |
| TGGCCGCGGCGATGGAATCT+GGG | 0.496216 | tig0034911:+23844 | Msa1453870:CDS |
| GACGGCAAAGATGATTTGAC+TGG | 0.510517 | tig0034911:+26277 | Msa1453870:CDS |
| AGGGGAATTGCAGTTTCACT+GGG | 0.514956 | tig0034911:+26356 | Msa1453870:CDS |
| GGCGATGGAATCTGGGACGG+AGG | 0.517778 | tig0034911:+23851 | Msa1453870:CDS |
| AGAAAGGGATCCGACTCCGC+AGG | 0.519025 | tig0034911:+26336 | Msa1453870:CDS |
| ACAGCTTATGGCTAGAGCAA+TGG | 0.524590 | tig0034911:+23995 | Msa1453870:CDS |
| ATGGCTAGAGCAATGGGAGG+GGG | 0.529861 | tig0034911:+24002 | Msa1453870:CDS |
| TATGGCTAGAGCAATGGGAG+GGG | 0.529887 | tig0034911:+24001 | Msa1453870:CDS |
| TGGGACGAGAAACAAACAAC+GGG | 0.535214 | tig0034911:+26297 | Msa1453870:CDS |
| GAAAGGGATCCGACTCCGCA+GGG | 0.540119 | tig0034911:+26337 | Msa1453870:CDS |
| CAGCTCCAGCTCGAAACCAA+AGG | 0.542714 | tig0034911:-23970 | None:intergenic |
| CGCGGCGATGGAATCTGGGA+CGG | 0.582286 | tig0034911:+23848 | Msa1453870:CDS |
| ACCGGTGAACCAGATGGCCG+CGG | 0.591781 | tig0034911:+23830 | None:intergenic |
| GCTATCGTTCCAAACTGATA+CGG | 0.594176 | tig0034911:-26396 | None:intergenic |
| TTATGGCTAGAGCAATGGGA+GGG | 0.604810 | tig0034911:+24000 | Msa1453870:CDS |
| CCCCGGCATAGAGAACTGTA+AGG | 0.611801 | tig0034911:+24025 | Msa1453870:CDS |
| CCTTACAGTTCTCTATGCCG+GGG | 0.621235 | tig0034911:-24025 | None:intergenic |
| ACGGCAAAGATGATTTGACT+GGG | 0.671984 | tig0034911:+26278 | Msa1453870:CDS |
| CTTATGGCTAGAGCAATGGG+AGG | 0.675758 | tig0034911:+23999 | Msa1453870:CDS |
| AAAGGGATCCGACTCCGCAG+GGG | 0.687311 | tig0034911:+26338 | Msa1453870:CDS |
| CTGGGACGAGAAACAAACAA+CGG | 0.690127 | tig0034911:+26296 | Msa1453870:CDS |
| ATTGCTCTAGCCATAAGCTG+TGG | 0.691371 | tig0034911:-23993 | None:intergenic |
| GCTCCAGCTCGAAACCAAAG+GGG | 0.703117 | tig0034911:-23968 | None:intergenic |
| GTGAAACTGCAATTCCCCTG+CGG | 0.730557 | tig0034911:-26352 | None:intergenic |
| CGTCCCAGATTCCATCGCCG+CGG | 0.737524 | tig0034911:-23847 | None:intergenic |
| GGGGAATTGCAGTTTCACTG+GGG | 0.756841 | tig0034911:+26357 | Msa1453870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAATTTATTTAAATTG+GGG | + | tig0034911:24297-24316 | Msa1453870:intron | 10.0% |
| !! | AAAAAATTTATTTAAATTGG+GGG | + | tig0034911:24298-24317 | Msa1453870:intron | 10.0% |
| !!! | AATTTTGAAATGATTAAAAA+AGG | + | tig0034911:24453-24472 | Msa1453870:intron | 10.0% |
| !!! | TTTTTATATTGAAAGAAAAA+TGG | + | tig0034911:24664-24683 | Msa1453870:intron | 10.0% |
| !! | ATAAATGAAAATTAAACTAA+CGG | + | tig0034911:24827-24846 | Msa1453870:intron | 10.0% |
| !! | AATACAAAAAAAATAGATTA+GGG | - | tig0034911:24909-24928 | None:intergenic | 10.0% |
| !! | AAATACAAAAAAAATAGATT+AGG | - | tig0034911:24910-24929 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATGTATATAAAG+CGG | + | tig0034911:24928-24947 | Msa1453870:intron | 10.0% |
| !! | TTAAAAGCTAAAATAAAAAT+TGG | + | tig0034911:25867-25886 | Msa1453870:intron | 10.0% |
| !! | AAAAATTTATTTAAATTGGG+GGG | + | tig0034911:24299-24318 | Msa1453870:intron | 15.0% |
| !! | AAAAGTTAAATAAAATCAAG+AGG | - | tig0034911:24390-24409 | None:intergenic | 15.0% |
| !! | TCAATAAAATGTAGATAATT+AGG | - | tig0034911:24483-24502 | None:intergenic | 15.0% |
| !!! | TTATCTACATTTTATTGATT+TGG | + | tig0034911:24485-24504 | Msa1453870:intron | 15.0% |
| !!! | ATTTGTTTTGTGTTTTTTAT+TGG | + | tig0034911:24584-24603 | Msa1453870:intron | 15.0% |
| !!! | TTTTTATTGGTTTTGAAAAA+AGG | + | tig0034911:24597-24616 | Msa1453870:intron | 15.0% |
| !! | TTTCTCATTTATATTTACAT+TGG | + | tig0034911:24994-25013 | Msa1453870:intron | 15.0% |
| !!! | ATTTGAATGATTTTTCAAAT+GGG | + | tig0034911:25386-25405 | Msa1453870:intron | 15.0% |
| !! | CGAAAAAAATAAAAACAAAA+TGG | + | tig0034911:25543-25562 | Msa1453870:intron | 15.0% |
| !! | ATAAAAACAAAATGGTAAAA+TGG | + | tig0034911:25551-25570 | Msa1453870:intron | 15.0% |
| !!! | TTTTAAAATAAAAAGCCAAG+TGG | + | tig0034911:24620-24639 | Msa1453870:intron | 20.0% |
| !!! | TTTGAATGTTTTTGTTGTTT+TGG | + | tig0034911:24800-24819 | Msa1453870:intron | 20.0% |
| !!! | GTTGATAAAAAATGGAAAAT+TGG | + | tig0034911:25312-25331 | Msa1453870:intron | 20.0% |
| !!! | GATTTGAATGATTTTTCAAA+TGG | + | tig0034911:25385-25404 | Msa1453870:intron | 20.0% |
| !! | ACTTGAGAAAGAAAAAAAAT+TGG | + | tig0034911:25445-25464 | Msa1453870:intron | 20.0% |
| !!! | CTATATTTTTGGACAATTTT+TGG | + | tig0034911:25477-25496 | Msa1453870:intron | 20.0% |
| !! | TTTCGTTTAATTACTTCTTT+AGG | - | tig0034911:25528-25547 | None:intergenic | 20.0% |
| !! | TAAATTAAAAAAGTGAGAAG+AGG | + | tig0034911:25652-25671 | Msa1453870:intron | 20.0% |
| !!! | ACTTTGGTTTTTTTTTTACT+TGG | + | tig0034911:25799-25818 | Msa1453870:intron | 20.0% |
| !! | TAGAGTACTACGAATATTTA+GGG | - | tig0034911:24361-24380 | None:intergenic | 25.0% |
| !!! | CTACATTTTATTGATTTGGA+AGG | + | tig0034911:24489-24508 | Msa1453870:intron | 25.0% |
| !! | AAAATAGATTAGGGATTTTG+TGG | - | tig0034911:24900-24919 | None:intergenic | 25.0% |
| ! | AATGCAAGAAAATACAAGAA+AGG | + | tig0034911:25102-25121 | Msa1453870:intron | 25.0% |
| ! | ATGCAAGAAAATACAAGAAA+GGG | + | tig0034911:25103-25122 | Msa1453870:intron | 25.0% |
| !!! | GTTCTAAGGTTGATAAAAAA+TGG | + | tig0034911:25304-25323 | Msa1453870:intron | 25.0% |
| ! | TAAAAATATAAAGAGCGAAG+AGG | + | tig0034911:25979-25998 | Msa1453870:intron | 25.0% |
| ! | AAAAATATAAAGAGCGAAGA+GGG | + | tig0034911:25980-25999 | Msa1453870:intron | 25.0% |
| ! | ATCTTAAAATACCTCATGTT+TGG | - | tig0034911:26018-26037 | None:intergenic | 25.0% |
| !!! | AATAGTCTTTGACTTTTCAA+AGG | - | tig0034911:26059-26078 | None:intergenic | 25.0% |
| !! | ATGTATGAATGTAGGATTTT+AGG | + | tig0034911:26091-26110 | Msa1453870:intron | 25.0% |
| !!! | TAGGATTTTAGGTCAAAAAT+TGG | + | tig0034911:26102-26121 | Msa1453870:intron | 25.0% |
| !!! | AGGATTTTAGGTCAAAAATT+GGG | + | tig0034911:26103-26122 | Msa1453870:intron | 25.0% |
| ! | CAACATCTTAAGTCAAAAAT+TGG | - | tig0034911:26226-26245 | None:intergenic | 25.0% |
| !!! | ATACCCAATTTGTTAAAGAA+AGG | + | tig0034911:26320-26339 | Msa1453870:CDS | 25.0% |
| !!! | TACCCAATTTGTTAAAGAAA+GGG | + | tig0034911:26321-26340 | Msa1453870:CDS | 25.0% |
| ! | ATCCCTTTCTTTAACAAATT+GGG | - | tig0034911:26326-26345 | None:intergenic | 25.0% |
| ! | GTAGAGTACTACGAATATTT+AGG | - | tig0034911:24362-24381 | None:intergenic | 30.0% |
| ! | TTGAAAGAAAAATGGACTCA+AGG | + | tig0034911:24672-24691 | Msa1453870:intron | 30.0% |
| GATCACTTGATTGAAAATCA+AGG | + | tig0034911:24744-24763 | Msa1453870:intron | 30.0% | |
| CCAGCAATTAGAATGTATTT+AGG | - | tig0034911:25021-25040 | None:intergenic | 30.0% | |
| CCTAAATACATTCTAATTGC+TGG | + | tig0034911:25018-25037 | Msa1453870:intron | 30.0% | |
| AGCTCTATTTATAGGTTCTA+AGG | + | tig0034911:25290-25309 | Msa1453870:intron | 30.0% | |
| ! | ATTGGTTTAATGCACTTTGA+TGG | + | tig0034911:25330-25349 | Msa1453870:intron | 30.0% |
| TTGGTTTAATGCACTTTGAT+GGG | + | tig0034911:25331-25350 | Msa1453870:intron | 30.0% | |
| !! | TTGAATGAGATTGATGGTTT+TGG | + | tig0034911:25357-25376 | Msa1453870:intron | 30.0% |
| TGTAAAAATGGCATGATTGA+TGG | + | tig0034911:25419-25438 | Msa1453870:intron | 30.0% | |
| TGTCCAAAAATATAGTGTCA+AGG | - | tig0034911:25472-25491 | None:intergenic | 30.0% | |
| TGAAAAGTCAAAGACTATTC+AGG | + | tig0034911:26060-26079 | Msa1453870:intron | 30.0% | |
| GAAAAGTCAAAGACTATTCA+GGG | + | tig0034911:26061-26080 | Msa1453870:intron | 30.0% | |
| !! | GGATTTTAGGTCAAAAATTG+GGG | + | tig0034911:26104-26123 | Msa1453870:intron | 30.0% |
| GACGAAGAAAACTTAAATAG+GGG | - | tig0034911:26141-26160 | None:intergenic | 30.0% | |
| GGACGAAGAAAACTTAAATA+GGG | - | tig0034911:26142-26161 | None:intergenic | 30.0% | |
| !! | CTATTTAAGTTTTCTTCGTC+CGG | + | tig0034911:26141-26160 | Msa1453870:intron | 30.0% |
| AGATTTCATCTTCAAATCTC+CGG | - | tig0034911:26163-26182 | None:intergenic | 30.0% | |
| !! | AGATGAAATCTTTGAGTTGA+CGG | + | tig0034911:26172-26191 | Msa1453870:intron | 30.0% |
| GATCCCTTTCTTTAACAAAT+TGG | - | tig0034911:26327-26346 | None:intergenic | 30.0% | |
| TAAAGACCCCTTAATTCGAA+TGG | + | tig0034911:23906-23925 | Msa1453870:intron | 35.0% | |
| AAAGACCCCTTAATTCGAAT+GGG | + | tig0034911:23907-23926 | Msa1453870:intron | 35.0% | |
| ATTAAAAGCAAGGACCACTA+CGG | + | tig0034911:24190-24209 | Msa1453870:intron | 35.0% | |
| TTTATTTAAATTGGGGGGTC+CGG | + | tig0034911:24304-24323 | Msa1453870:intron | 35.0% | |
| ! | GCAATAAAAATAAAAGCGCG+TGG | + | tig0034911:24851-24870 | Msa1453870:intron | 35.0% |
| ! | TGGATTTTTGTAGTGACGTT+GGG | + | tig0034911:24871-24890 | Msa1453870:intron | 35.0% |
| ! | TGACAACTCAAGAGAACTTT+TGG | + | tig0034911:25244-25263 | Msa1453870:intron | 35.0% |
| ! | TTTGGTGTGTGAAATTGTGA+AGG | + | tig0034911:25262-25281 | Msa1453870:intron | 35.0% |
| AGGATGAGAGCTCTATTTAT+AGG | + | tig0034911:25282-25301 | Msa1453870:intron | 35.0% | |
| TGGTTTAATGCACTTTGATG+GGG | + | tig0034911:25332-25351 | Msa1453870:intron | 35.0% | |
| GGAGAGTTGACATGTAAAAA+TGG | + | tig0034911:25407-25426 | Msa1453870:intron | 35.0% | |
| ! | GGACCTTGACACTATATTTT+TGG | + | tig0034911:25466-25485 | Msa1453870:intron | 35.0% |
| !! | CTTTCTTCCCATTTTTCATC+AGG | - | tig0034911:25698-25717 | None:intergenic | 35.0% |
| !!! | TTTTGACTCTGCACTGATTA+TGG | + | tig0034911:25718-25737 | Msa1453870:intron | 35.0% |
| ! | GGCTTGGAGGAAAAATATTT+TGG | + | tig0034911:25744-25763 | Msa1453870:intron | 35.0% |
| AGTCCAAAATTAAGTGTCCA+GGG | - | tig0034911:25772-25791 | None:intergenic | 35.0% | |
| ! | TTTTGGACTCATTGACACTT+TGG | + | tig0034911:25783-25802 | Msa1453870:intron | 35.0% |
| CAAAGGAAATTTCAGCAGAA+AGG | - | tig0034911:26042-26061 | None:intergenic | 35.0% | |
| GTCAGACAATGTATGAATGT+AGG | + | tig0034911:26083-26102 | Msa1453870:intron | 35.0% | |
| CGGACGAAGAAAACTTAAAT+AGG | - | tig0034911:26143-26162 | None:intergenic | 35.0% | |
| !! | GATGAAATCTTTGAGTTGAC+GGG | + | tig0034911:26173-26192 | Msa1453870:intron | 35.0% |
| CATGATGCAATTATGAATGC+AGG | + | tig0034911:26255-26274 | Msa1453870:intron | 35.0% | |
| ATGCAATTATGAATGCAGGA+CGG | + | tig0034911:26259-26278 | Msa1453870:intron | 35.0% | |
| TCGTAGTATCTCTCTAGATC+TGG | + | tig0034911:23876-23895 | Msa1453870:intron | 40.0% | |
| AAGACCCCTTAATTCGAATG+GGG | + | tig0034911:23908-23927 | Msa1453870:intron | 40.0% | |
| ATCCTTACAGTTCTCTATGC+CGG | - | tig0034911:24030-24049 | None:intergenic | 40.0% | |
| AGTACGATAAATTAGCCCTG+CGG | + | tig0034911:24161-24180 | Msa1453870:intron | 40.0% | |
| ! | GCTTTTAATAAAGCTCCGCA+GGG | - | tig0034911:24179-24198 | None:intergenic | 40.0% |
| ! | TGCTTTTAATAAAGCTCCGC+AGG | - | tig0034911:24180-24199 | None:intergenic | 40.0% |
| !! | GCGGAGCTTTATTAAAAGCA+AGG | + | tig0034911:24180-24199 | Msa1453870:intron | 40.0% |
| TTAAAAGCAAGGACCACTAC+GGG | + | tig0034911:24191-24210 | Msa1453870:intron | 40.0% | |
| !!! | GCGTCATTTTTTGGAGATCA+AGG | + | tig0034911:24232-24251 | Msa1453870:intron | 40.0% |
| TTATTTAAATTGGGGGGTCC+GGG | + | tig0034911:24305-24324 | Msa1453870:intron | 40.0% | |
| !! | GGGTTGGTTATATTTAGGGA+AGG | + | tig0034911:24327-24346 | Msa1453870:intron | 40.0% |
| !!! | TTTTTTAACCCCGAACTACG+AGG | - | tig0034911:24554-24573 | None:intergenic | 40.0% |
| ACCAATTCTCATTTGCCACT+TGG | - | tig0034911:24638-24657 | None:intergenic | 40.0% | |
| ! | GTGGATTTTTGTAGTGACGT+TGG | + | tig0034911:24870-24889 | Msa1453870:intron | 40.0% |
| ! | CTTCGGTAATTTTGTCCCTT+CGG | - | tig0034911:25133-25152 | None:intergenic | 40.0% |
| GAAGGGACAAAATTACCGAA+GGG | + | tig0034911:25132-25151 | Msa1453870:intron | 40.0% | |
| !!! | CTCTCTTTTTTCTGTCCCTT+CGG | - | tig0034911:25165-25184 | None:intergenic | 40.0% |
| TCGTCAACACAAGCTAAATG+AGG | + | tig0034911:25201-25220 | Msa1453870:intron | 40.0% | |
| CGTCAACACAAGCTAAATGA+GGG | + | tig0034911:25202-25221 | Msa1453870:intron | 40.0% | |
| GGGGATTTGAATGAGATTGA+TGG | + | tig0034911:25351-25370 | Msa1453870:intron | 40.0% | |
| AACGCGTTCCTGATGAAAAA+TGG | + | tig0034911:25687-25706 | Msa1453870:intron | 40.0% | |
| ACGCGTTCCTGATGAAAAAT+GGG | + | tig0034911:25688-25707 | Msa1453870:intron | 40.0% | |
| !! | GGAAAAATATTTTGGACCCC+TGG | + | tig0034911:25752-25771 | Msa1453870:intron | 40.0% |
| GTCCAAAATTAAGTGTCCAG+GGG | - | tig0034911:25771-25790 | None:intergenic | 40.0% | |
| GAGTCCAAAATTAAGTGTCC+AGG | - | tig0034911:25773-25792 | None:intergenic | 40.0% | |
| ACGGCAAAGATGATTTGACT+GGG | + | tig0034911:26278-26297 | Msa1453870:CDS | 40.0% | |
| TGTCTACTACCGTATCAGTT+TGG | + | tig0034911:26387-26406 | Msa1453870:CDS | 40.0% | |
| AGACCCCTTAATTCGAATGG+GGG | + | tig0034911:23909-23928 | Msa1453870:intron | 45.0% | |
| TCAGCCCCCATTCGAATTAA+GGG | - | tig0034911:23916-23935 | None:intergenic | 45.0% | |
| ATTGCTCTAGCCATAAGCTG+TGG | - | tig0034911:23996-24015 | None:intergenic | 45.0% | |
| ACAGCTTATGGCTAGAGCAA+TGG | + | tig0034911:23995-24014 | Msa1453870:CDS | 45.0% | |
| CAGCTTATGGCTAGAGCAAT+GGG | + | tig0034911:23996-24015 | Msa1453870:CDS | 45.0% | |
| TTATGGCTAGAGCAATGGGA+GGG | + | tig0034911:24000-24019 | Msa1453870:CDS | 45.0% | |
| TCCTTACAGTTCTCTATGCC+GGG | - | tig0034911:24029-24048 | None:intergenic | 45.0% | |
| CAAAAAATGACGCGACACCT+TGG | - | tig0034911:24225-24244 | None:intergenic | 45.0% | |
| !!! | CAAGGTGTCGCGTCATTTTT+TGG | + | tig0034911:24223-24242 | Msa1453870:intron | 45.0% |
| TATTTAAATTGGGGGGTCCG+GGG | + | tig0034911:24306-24325 | Msa1453870:intron | 45.0% | |
| !! | TCCGGGGGTTGGTTATATTT+AGG | + | tig0034911:24322-24341 | Msa1453870:intron | 45.0% |
| CCCTAAATATAACCAACCCC+CGG | - | tig0034911:24326-24345 | None:intergenic | 45.0% | |
| !! | CCGGGGGTTGGTTATATTTA+GGG | + | tig0034911:24323-24342 | Msa1453870:intron | 45.0% |
| !! | TACGAGGTTTTGATCCCTCA+CGG | - | tig0034911:24538-24557 | None:intergenic | 45.0% |
| GGGATCAAAACCTCGTAGTT+CGG | + | tig0034911:24541-24560 | Msa1453870:intron | 45.0% | |
| GGATCAAAACCTCGTAGTTC+GGG | + | tig0034911:24542-24561 | Msa1453870:intron | 45.0% | |
| GATCAAAACCTCGTAGTTCG+GGG | + | tig0034911:24543-24562 | Msa1453870:intron | 45.0% | |
| GCCAAGTGGCAAATGAGAAT+TGG | + | tig0034911:24634-24653 | Msa1453870:intron | 45.0% | |
| TACAAGAAAGGGACAACCGA+AGG | + | tig0034911:25114-25133 | Msa1453870:intron | 45.0% | |
| ACAAGAAAGGGACAACCGAA+GGG | + | tig0034911:25115-25134 | Msa1453870:intron | 45.0% | |
| CGAAGGGACAAAATTACCGA+AGG | + | tig0034911:25131-25150 | Msa1453870:intron | 45.0% | |
| !! | ACTCTGCACTGATTATGGCA+TGG | + | tig0034911:25723-25742 | Msa1453870:intron | 45.0% |
| ! | GACCCCTGGACACTTAATTT+TGG | + | tig0034911:25766-25785 | Msa1453870:intron | 45.0% |
| GACGGCAAAGATGATTTGAC+TGG | + | tig0034911:26277-26296 | Msa1453870:CDS | 45.0% | |
| CTGGGACGAGAAACAAACAA+CGG | + | tig0034911:26296-26315 | Msa1453870:CDS | 45.0% | |
| TGGGACGAGAAACAAACAAC+GGG | + | tig0034911:26297-26316 | Msa1453870:CDS | 45.0% | |
| AGGGGAATTGCAGTTTCACT+GGG | + | tig0034911:26356-26375 | Msa1453870:CDS | 45.0% | |
| !! | TTGAAAAAATTTATTTAAAT+TGG | + | tig0034911:24295-24314 | Msa1453870:intron | 5.0% |
| !! | TGAAAAAATTTATTTAAATT+GGG | + | tig0034911:24296-24315 | Msa1453870:intron | 5.0% |
| !! | TTATAAAATTAAATAAAAGA+TGG | + | tig0034911:25905-25924 | Msa1453870:intron | 5.0% |
| CAGCCCCCATTCGAATTAAG+GGG | - | tig0034911:23915-23934 | None:intergenic | 50.0% | |
| GTCAGCCCCCATTCGAATTA+AGG | - | tig0034911:23917-23936 | None:intergenic | 50.0% | |
| AGCTCCAGCTCGAAACCAAA+GGG | - | tig0034911:23972-23991 | None:intergenic | 50.0% | |
| CTTATGGCTAGAGCAATGGG+AGG | + | tig0034911:23999-24018 | Msa1453870:CDS | 50.0% | |
| TATGGCTAGAGCAATGGGAG+GGG | + | tig0034911:24001-24020 | Msa1453870:CDS | 50.0% | |
| CCTTACAGTTCTCTATGCCG+GGG | - | tig0034911:24028-24047 | None:intergenic | 50.0% | |
| ATTTAAATTGGGGGGTCCGG+GGG | + | tig0034911:24307-24326 | Msa1453870:intron | 50.0% | |
| !! | ACGAGGTTTTGATCCCTCAC+GGG | - | tig0034911:24537-24556 | None:intergenic | 50.0% |
| ACCGAAGGGACTTATTCCGA+AGG | + | tig0034911:25146-25165 | Msa1453870:intron | 50.0% | |
| CCCTTCGGAATAAGTCCCTT+CGG | - | tig0034911:25150-25169 | None:intergenic | 50.0% | |
| CCGAAGGGACTTATTCCGAA+GGG | + | tig0034911:25147-25166 | Msa1453870:intron | 50.0% | |
| !! | GCACTGATTATGGCATGGCT+TGG | + | tig0034911:25728-25747 | Msa1453870:intron | 50.0% |
| ! | CTGATTATGGCATGGCTTGG+AGG | + | tig0034911:25731-25750 | Msa1453870:intron | 50.0% |
| ! | CCTCATGTTTGGTTCCGAGT+CGG | - | tig0034911:26007-26026 | None:intergenic | 50.0% |
| GTGAAACTGCAATTCCCCTG+CGG | - | tig0034911:26355-26374 | None:intergenic | 50.0% | |
| CAGGGGAATTGCAGTTTCAC+TGG | + | tig0034911:26355-26374 | Msa1453870:CDS | 50.0% | |
| GGGGAATTGCAGTTTCACTG+GGG | + | tig0034911:26357-26376 | Msa1453870:CDS | 50.0% | |
| GCTCCAGCTCGAAACCAAAG+GGG | - | tig0034911:23971-23990 | None:intergenic | 55.0% | |
| CAGCTCCAGCTCGAAACCAA+AGG | - | tig0034911:23973-23992 | None:intergenic | 55.0% | |
| ATGGCTAGAGCAATGGGAGG+GGG | + | tig0034911:24002-24021 | Msa1453870:CDS | 55.0% | |
| CCCCGGCATAGAGAACTGTA+AGG | + | tig0034911:24025-24044 | Msa1453870:CDS | 55.0% | |
| AAAGCAAGGACCACTACGGG+AGG | + | tig0034911:24194-24213 | Msa1453870:intron | 55.0% | |
| ! | CTTGGTTTGACCTCCCGTAG+TGG | - | tig0034911:24207-24226 | None:intergenic | 55.0% |
| CACTACGGGAGGTCAAACCA+AGG | + | tig0034911:24205-24224 | Msa1453870:intron | 55.0% | |
| TTGATCCCTCACGGGTACGT+AGG | - | tig0034911:24529-24548 | None:intergenic | 55.0% | |
| !! | CCGACTCGGAACCAAACATG+AGG | + | tig0034911:26004-26023 | Msa1453870:intron | 55.0% |
| GCTGGAGCTGCCACAGCTTA+TGG | + | tig0034911:23983-24002 | Msa1453870:CDS | 60.0% | |
| AGGCCAACAGCCCAGTGAAC+CGG | + | tig0034911:24104-24123 | Msa1453870:intron | 60.0% | |
| CTCTGCCTACGTACCCGTGA+GGG | + | tig0034911:24521-24540 | Msa1453870:intron | 60.0% | |
| AGAGCGAAGAGGGTCCGACT+CGG | + | tig0034911:25990-26009 | Msa1453870:intron | 60.0% | |
| AGAAAGGGATCCGACTCCGC+AGG | + | tig0034911:26336-26355 | Msa1453870:CDS | 60.0% | |
| GAAAGGGATCCGACTCCGCA+GGG | + | tig0034911:26337-26356 | Msa1453870:CDS | 60.0% | |
| AAAGGGATCCGACTCCGCAG+GGG | + | tig0034911:26338-26357 | Msa1453870:CDS | 60.0% | |
| CTGCAATTCCCCTGCGGAGT+CGG | - | tig0034911:26349-26368 | None:intergenic | 60.0% | |
| ATGGCCGCGGCGATGGAATC+TGG | + | tig0034911:23843-23862 | Msa1453870:CDS | 65.0% | |
| TGGCCGCGGCGATGGAATCT+GGG | + | tig0034911:23844-23863 | Msa1453870:CDS | 65.0% | |
| CGTCCCAGATTCCATCGCCG+CGG | - | tig0034911:23850-23869 | None:intergenic | 65.0% | |
| CGCGGCGATGGAATCTGGGA+CGG | + | tig0034911:23848-23867 | Msa1453870:CDS | 65.0% | |
| ! | GGCGATGGAATCTGGGACGG+AGG | + | tig0034911:23851-23870 | Msa1453870:CDS | 65.0% |
| GCTGACCACTGAGCCCACTC+TGG | + | tig0034911:23931-23950 | Msa1453870:intron | 65.0% | |
| ! | GGGCCCCTTTGGTTTCGAGC+TGG | + | tig0034911:23965-23984 | Msa1453870:CDS | 65.0% |
| AGGAGCTGCGGGCAAGTGCT+TGG | + | tig0034911:24080-24099 | Msa1453870:intron | 65.0% | |
| GCTGCGGGCAAGTGCTTGGT+AGG | + | tig0034911:24084-24103 | Msa1453870:intron | 65.0% | |
| GGCCAACAGCCCAGTGAACC+GGG | + | tig0034911:24105-24124 | Msa1453870:intron | 65.0% | |
| CAACAGCCCAGTGAACCGGG+CGG | + | tig0034911:24108-24127 | Msa1453870:intron | 65.0% | |
| AACAGCCCAGTGAACCGGGC+GGG | + | tig0034911:24109-24128 | Msa1453870:intron | 65.0% | |
| AAATTGGGGGGTCCGGGGGT+TGG | + | tig0034911:24311-24330 | Msa1453870:intron | 65.0% | |
| CCTCACGGGTACGTAGGCAG+AGG | - | tig0034911:24523-24542 | None:intergenic | 65.0% | |
| CCTCTGCCTACGTACCCGTG+AGG | + | tig0034911:24520-24539 | Msa1453870:intron | 65.0% | |
| ! | CGAGGCCAGAGTGGGCTCAG+TGG | - | tig0034911:23939-23958 | None:intergenic | 70.0% |
| TGAGCCCACTCTGGCCTCGC+AGG | + | tig0034911:23940-23959 | Msa1453870:intron | 70.0% | |
| GAGCCCACTCTGGCCTCGCA+GGG | + | tig0034911:23941-23960 | Msa1453870:intron | 70.0% | |
| AGAGCAATGGGAGGGGGCCC+CGG | + | tig0034911:24008-24027 | Msa1453870:CDS | 70.0% | |
| TAACGAGCGCTCCGCCCGCT+TGG | + | tig0034911:24049-24068 | Msa1453870:CDS | 70.0% | |
| CGCCCGGTTCACTGGGCTGT+TGG | - | tig0034911:24110-24129 | None:intergenic | 70.0% | |
| ACAGCCCAGTGAACCGGGCG+GGG | + | tig0034911:24110-24129 | Msa1453870:intron | 70.0% | |
| AGTGCCCCGCCCGGTTCACT+GGG | - | tig0034911:24117-24136 | None:intergenic | 70.0% | |
| CTTTCGTCGAGTGCCCCGCC+CGG | - | tig0034911:24126-24145 | None:intergenic | 70.0% | |
| ! | GGGCGGGGCACTCGACGAAA+GGG | + | tig0034911:24125-24144 | Msa1453870:intron | 70.0% |
| ! | GGCGGGGCACTCGACGAAAG+GGG | + | tig0034911:24126-24145 | Msa1453870:intron | 70.0% |
| ! | GCGGGGCACTCGACGAAAGG+GGG | + | tig0034911:24127-24146 | Msa1453870:intron | 70.0% |
| CCGCCCTGCGAGGCCAGAGT+GGG | - | tig0034911:23947-23966 | None:intergenic | 75.0% | |
| CCCACTCTGGCCTCGCAGGG+CGG | + | tig0034911:23944-23963 | Msa1453870:intron | 75.0% | |
| CCACTCTGGCCTCGCAGGGC+GGG | + | tig0034911:23945-23964 | Msa1453870:intron | 75.0% | |
| AGCTCCTGCCGCCCGCCAAG+CGG | - | tig0034911:24067-24086 | None:intergenic | 75.0% | |
| ! | TTGGCGGGCGGCAGGAGCTG+CGG | + | tig0034911:24068-24087 | Msa1453870:CDS | 75.0% |
| GAGTGCCCCGCCCGGTTCAC+TGG | - | tig0034911:24118-24137 | None:intergenic | 75.0% | |
| ! | CGGGCGGGGCACTCGACGAA+AGG | + | tig0034911:24124-24143 | Msa1453870:intron | 75.0% |
| ! | CCCGCCCTGCGAGGCCAGAG+TGG | - | tig0034911:23948-23967 | None:intergenic | 80.0% |
| ! | CCAAAGGGGCCCGCCCTGCG+AGG | - | tig0034911:23957-23976 | None:intergenic | 80.0% |
| ! | CCTCGCAGGGCGGGCCCCTT+TGG | + | tig0034911:23954-23973 | Msa1453870:intron | 80.0% |
| ! | CGAGCGCTCCGCCCGCTTGG+CGG | + | tig0034911:24052-24071 | Msa1453870:CDS | 80.0% |
| ! | GAGCGCTCCGCCCGCTTGGC+GGG | + | tig0034911:24053-24072 | Msa1453870:CDS | 80.0% |
| ! | GCTCCTGCCGCCCGCCAAGC+GGG | - | tig0034911:24066-24085 | None:intergenic | 80.0% |
| !! | TGGCGGGCGGCAGGAGCTGC+GGG | + | tig0034911:24069-24088 | Msa1453870:CDS | 80.0% |
| ! | CGCTCCGCCCGCTTGGCGGG+CGG | + | tig0034911:24056-24075 | Msa1453870:CDS | 85.0% |
| ! | CCTGCCGCCCGCCAAGCGGG+CGG | - | tig0034911:24063-24082 | None:intergenic | 85.0% |
| !! | CCGCCCGCTTGGCGGGCGGC+AGG | + | tig0034911:24060-24079 | Msa1453870:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034911 | gene | 23843 | 26417 | 23843 | ID=Msa1453870;Name=Msa1453870 |
| tig0034911 | mRNA | 23843 | 26417 | 23843 | ID=Msa1453870-mRNA-1;Parent=Msa1453870;Name=Msa1453870-mRNA-1;_AED=0.93;_eAED=1.00;_QI=0|0|0|0.33|1|1|3|0|102 |
| tig0034911 | exon | 23843 | 23877 | 23843 | ID=Msa1453870-mRNA-1:exon:19345;Parent=Msa1453870-mRNA-1 |
| tig0034911 | exon | 23962 | 24094 | 23962 | ID=Msa1453870-mRNA-1:exon:19346;Parent=Msa1453870-mRNA-1 |
| tig0034911 | exon | 26277 | 26417 | 26277 | ID=Msa1453870-mRNA-1:exon:19347;Parent=Msa1453870-mRNA-1 |
| tig0034911 | CDS | 23843 | 23877 | 23843 | ID=Msa1453870-mRNA-1:cds;Parent=Msa1453870-mRNA-1 |
| tig0034911 | CDS | 23962 | 24094 | 23962 | ID=Msa1453870-mRNA-1:cds;Parent=Msa1453870-mRNA-1 |
| tig0034911 | CDS | 26277 | 26417 | 26277 | ID=Msa1453870-mRNA-1:cds;Parent=Msa1453870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
