Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461930 | KEH23040.1 | 65.753 | 73 | 23 | 1 | 12 | 82 | 156 | 228 | 2.36e-19 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461930 | sp|Q9C5Z2|EIF3H_ARATH | 66.667 | 57 | 5 | 1 | 39 | 81 | 70 | 126 | 2.42e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461930 | A0A072UB21 | 65.753 | 73 | 23 | 1 | 12 | 82 | 156 | 228 | 1.13e-19 | 93.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1461930 | 0.802786 | 4.756265e-49 | -8.615850e-47 |
| Msa0091210 | Msa1461930 | -0.819620 | 1.055254e-52 | -8.615850e-47 |
| Msa0105070 | Msa1461930 | 0.812285 | 4.578309e-51 | -8.615850e-47 |
| Msa1392260 | Msa1461930 | 0.820238 | 7.621835e-53 | -8.615850e-47 |
| Msa1420140 | Msa1461930 | 0.800530 | 1.380622e-48 | -8.615850e-47 |
| Msa1429900 | Msa1461930 | 0.806269 | 8.927089e-50 | -8.615850e-47 |
| Msa0657970 | Msa1461930 | 0.812682 | 3.749068e-51 | -8.615850e-47 |
| Msa0688070 | Msa1461930 | 0.819948 | 8.883009e-53 | -8.615850e-47 |
| Msa0715470 | Msa1461930 | 0.814624 | 1.401515e-51 | -8.615850e-47 |
| Msa0731940 | Msa1461930 | 0.802278 | 6.052748e-49 | -8.615850e-47 |
| Msa0766630 | Msa1461930 | 0.818184 | 2.238106e-52 | -8.615850e-47 |
| Msa0779320 | Msa1461930 | 0.801735 | 7.825119e-49 | -8.615850e-47 |
| Msa0188830 | Msa1461930 | 0.824716 | 6.943995e-54 | -8.615850e-47 |
| Msa0223910 | Msa1461930 | 0.824984 | 6.000519e-54 | -8.615850e-47 |
| Msa1305340 | Msa1461930 | 0.802970 | 4.357817e-49 | -8.615850e-47 |
| Msa0426900 | Msa1461930 | 0.824350 | 8.467797e-54 | -8.615850e-47 |
| Msa0453000 | Msa1461930 | 0.804197 | 2.424450e-49 | -8.615850e-47 |
| Msa0469940 | Msa1461930 | -0.805154 | 1.530906e-49 | -8.615850e-47 |
| Msa1075220 | Msa1461930 | -0.801502 | 8.737330e-49 | -8.615850e-47 |
| Msa1082500 | Msa1461930 | 0.825042 | 5.814968e-54 | -8.615850e-47 |
| Msa0245940 | Msa1461930 | 0.800061 | 1.719845e-48 | -8.615850e-47 |
| Msa0284520 | Msa1461930 | 0.801995 | 6.920657e-49 | -8.615850e-47 |
| Msa0285450 | Msa1461930 | 0.832928 | 7.143282e-56 | -8.615850e-47 |
| Msa0305190 | Msa1461930 | 0.811194 | 7.907284e-51 | -8.615850e-47 |
| Msa0340450 | Msa1461930 | 0.804627 | 1.972460e-49 | -8.615850e-47 |
| Msa1131220 | Msa1461930 | 0.804775 | 1.837576e-49 | -8.615850e-47 |
| Msa1162550 | Msa1461930 | -0.805237 | 1.470674e-49 | -8.615850e-47 |
| Msa1224480 | Msa1461930 | 0.823745 | 1.173965e-53 | -8.615850e-47 |
| Msa0484780 | Msa1461930 | 0.821710 | 3.493836e-53 | -8.615850e-47 |
| Msa0572420 | Msa1461930 | 0.806821 | 6.828018e-50 | -8.615850e-47 |
| Msa0843260 | Msa1461930 | 0.809971 | 1.453151e-50 | -8.615850e-47 |
| Msa0870530 | Msa1461930 | 0.800155 | 1.645532e-48 | -8.615850e-47 |
| Msa0930390 | Msa1461930 | 0.807325 | 5.342108e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461930 | MtrunA17_Chr7g0222191 | 73.684 | 57 | 1 | 1 | 39 | 81 | 71 | 127 | 2.02e-18 | 79.3 |
| Msa1461930 | MtrunA17_Chr2g0325821 | 93.548 | 31 | 2 | 0 | 10 | 40 | 188 | 218 | 1.83e-12 | 63.2 |
| Msa1461930 | MtrunA17_Chr8g0360571 | 90.323 | 31 | 3 | 0 | 10 | 40 | 187 | 217 | 2.30e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461930 | AT1G10840.1 | 66.667 | 57 | 5 | 1 | 39 | 81 | 70 | 126 | 2.46e-16 | 73.9 |
Find 96 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTCAATCTCTCTTTAAT+TGG | 0.189395 | tig0041776:-10449 | Msa1461930:intron |
| CATCATTTCAAGCTGGTAAT+TGG | 0.226228 | tig0041776:+8039 | Msa1461930:intergenic |
| GAAGAATCAAATTGTTGATT+TGG | 0.249808 | tig0041776:-8869 | Msa1461930:five_prime_UTR |
| GGAGCATAGGCCAGAGAAAT+TGG | 0.276169 | tig0041776:-9145 | Msa1461930:five_prime_UTR |
| GTACTTGTGGCAAGGAGTTT+TGG | 0.289866 | tig0041776:-9224 | Msa1461930:intron |
| AATCAGCTCCACAGTTTGAT+AGG | 0.326172 | tig0041776:+7806 | Msa1461930:intergenic |
| AAGAATTTGAGGGAAGGATT+TGG | 0.327409 | tig0041776:-6751 | Msa1461930:CDS |
| CCAAGTTCCTCCAATTTCTC+TGG | 0.341847 | tig0041776:+9135 | Msa1461930:intergenic |
| ATGATTGTAAAGGATTCAAT+TGG | 0.349804 | tig0041776:-9805 | Msa1461930:five_prime_UTR |
| TATTACCTGGTAATTCATAA+AGG | 0.355740 | tig0041776:+7779 | Msa1461930:intergenic |
| TGACTCAATTCCATTCGATT+TGG | 0.359578 | tig0041776:-10015 | Msa1461930:five_prime_UTR |
| TTGGGAATTTGATGGTTGAT+AGG | 0.371806 | tig0041776:-9205 | Msa1461930:five_prime_UTR |
| GATCGAGTAGCAGTTCTAAC+AGG | 0.374242 | tig0041776:-6720 | Msa1461930:CDS |
| AGGGTGTATCCTGCGGGTTT+TGG | 0.380574 | tig0041776:-9928 | Msa1461930:five_prime_UTR |
| TGAGGGAAGGATTTGGTTTG+AGG | 0.392153 | tig0041776:-6744 | Msa1461930:CDS |
| TTCAATATCTGACTCAGTTA+TGG | 0.393256 | tig0041776:+8954 | Msa1461930:intergenic |
| CTCTGTAATTCAGAATTGTT+CGG | 0.395020 | tig0041776:-10058 | Msa1461930:five_prime_UTR |
| AAGACTCCTCTGTAAGTCTT+TGG | 0.400422 | tig0041776:-8898 | Msa1461930:five_prime_UTR |
| CTCCTGAGGTGAAGAATTTG+AGG | 0.402471 | tig0041776:-6762 | Msa1461930:CDS |
| CCAGAGAAATTGGAGGAACT+TGG | 0.403210 | tig0041776:-9135 | Msa1461930:five_prime_UTR |
| GGAGGCGTATGAGCGTTTAA+AGG | 0.407171 | tig0041776:-9830 | Msa1461930:five_prime_UTR |
| AAGCATGTGAGAAAATGATT+TGG | 0.410145 | tig0041776:+9068 | Msa1461930:intergenic |
| TCAAGTTCTTGCTTATCATC+TGG | 0.412579 | tig0041776:+8314 | Msa1461930:intergenic |
| TTCAAATTGCATATAGAAGA+AGG | 0.414598 | tig0041776:-9020 | Msa1461930:five_prime_UTR |
| TTTGAACCGTGGAAAACTCT+TGG | 0.419110 | tig0041776:-9740 | Msa1461930:five_prime_UTR |
| GAAAATACGCTTGAAGTAGA+AGG | 0.420834 | tig0041776:-9954 | Msa1461930:five_prime_UTR |
| CAGCAAAAGAAGAAAACAAA+AGG | 0.421736 | tig0041776:-10537 | Msa1461930:five_prime_UTR |
| TCCCTCAAATTCTTCACCTC+AGG | 0.427381 | tig0041776:+6760 | Msa1461930:intergenic |
| GACGAGGAAATTGAAGTTGA+TGG | 0.430594 | tig0041776:-8064 | Msa1461930:CDS |
| GCAGGACATGCTGGTAGTAT+TGG | 0.437204 | tig0041776:-10095 | Msa1461930:intron |
| TTGTCTTCATGTGCAGGATA+AGG | 0.445000 | tig0041776:-8373 | Msa1461930:CDS |
| TTTGGCGTAAGTGAGCTATA+CGG | 0.460712 | tig0041776:-9910 | Msa1461930:five_prime_UTR |
| AGGATTAAGTTAATGAAGAA+AGG | 0.470355 | tig0041776:-9000 | Msa1461930:five_prime_UTR |
| TAATCATTGTCTTCATGTGC+AGG | 0.475209 | tig0041776:-8379 | Msa1461930:CDS |
| ATGTTGACTGGTCTTGATGC+TGG | 0.481421 | tig0041776:-9108 | Msa1461930:five_prime_UTR |
| AAGGATTCAATTGGGTCTCT+AGG | 0.484738 | tig0041776:-9796 | Msa1461930:five_prime_UTR |
| CTGAAATTTGCAGGACATGC+TGG | 0.485653 | tig0041776:-10104 | Msa1461930:intron |
| TCTCATGTTGCTATGACTCA+TGG | 0.488487 | tig0041776:-9851 | Msa1461930:five_prime_UTR |
| ACGAGAGAATATTACTATTG+AGG | 0.489119 | tig0041776:-9717 | Msa1461930:intron |
| CGCATACTCGGCTGCATGGT+AGG | 0.491371 | tig0041776:+6676 | Msa1461930:intergenic |
| AGCTATCAGCAGAGTATGAA+GGG | 0.496822 | tig0041776:-9167 | Msa1461930:five_prime_UTR |
| TTTAAAGGAGATGATTGTAA+AGG | 0.497565 | tig0041776:-9815 | Msa1461930:five_prime_UTR |
| CTTTGCTGCAAAAGCATGGA+AGG | 0.500526 | tig0041776:-8810 | Msa1461930:intron |
| ACTGAGTAGGATGAGCAGTT+AGG | 0.501621 | tig0041776:+8845 | Msa1461930:intergenic |
| CAGAGTATGAAGGGGAGCAT+AGG | 0.503409 | tig0041776:-9158 | Msa1461930:five_prime_UTR |
| ACGCTTGAAGTAGAAGGTGC+AGG | 0.514637 | tig0041776:-9948 | Msa1461930:five_prime_UTR |
| GAGGGAAGGATTTGGTTTGA+GGG | 0.515868 | tig0041776:-6743 | Msa1461930:CDS |
| AAGAGAGAGGGAAAGAAAGA+AGG | 0.520533 | tig0041776:+10566 | Msa1461930:intergenic |
| TACTGCGGCTGAAGTGGCGC+AGG | 0.530940 | tig0041776:+6652 | Msa1461930:intergenic |
| AGGTACCAGTCCACATTGCT+TGG | 0.531008 | tig0041776:-7831 | Msa1461930:CDS |
| TCGGAAGAAAATAAGAAACT+TGG | 0.532104 | tig0041776:-9769 | Msa1461930:five_prime_UTR |
| GCAAGAATCACAAGAGATGA+AGG | 0.536051 | tig0041776:+10499 | Msa1461930:intergenic |
| AATTGGGTCTCTAGGAATCT+CGG | 0.539258 | tig0041776:-9788 | Msa1461930:five_prime_UTR |
| CACCAATTAAAGAGAGATTG+AGG | 0.540729 | tig0041776:+10447 | Msa1461930:intergenic |
| GAGCTATCAGCAGAGTATGA+AGG | 0.540932 | tig0041776:-9168 | Msa1461930:five_prime_UTR |
| GAAGTCTACTGCGGCTGAAG+TGG | 0.541446 | tig0041776:+6646 | Msa1461930:intergenic |
| CGCTTGAAGTAGAAGGTGCA+GGG | 0.549872 | tig0041776:-9947 | Msa1461930:five_prime_UTR |
| TGATTGTAAAGGATTCAATT+GGG | 0.552400 | tig0041776:-9804 | Msa1461930:five_prime_UTR |
| CAGAGAAATTGGAGGAACTT+GGG | 0.554710 | tig0041776:-9134 | Msa1461930:five_prime_UTR |
| CGATCTTTGCTGCAAAAGCA+TGG | 0.556290 | tig0041776:-8814 | Msa1461930:exon |
| AGGGAAGGATTTGGTTTGAG+GGG | 0.559527 | tig0041776:-6742 | Msa1461930:CDS |
| TGAAACCTTTATGAATTACC+AGG | 0.564604 | tig0041776:-7784 | Msa1461930:intron |
| AGCAAAAGAAGAAAACAAAA+GGG | 0.565828 | tig0041776:-10536 | Msa1461930:five_prime_UTR |
| CTCGGCTGCATGGTAGGAGG+AGG | 0.566371 | tig0041776:+6682 | Msa1461930:intergenic |
| AGGTGCAGGGTGTATCCTGC+GGG | 0.568506 | tig0041776:-9934 | Msa1461930:five_prime_UTR |
| AGCACCTCATCATTTCAAGC+TGG | 0.569034 | tig0041776:+8032 | Msa1461930:intergenic |
| TCGGTAGTGTGATGCTCAGA+AGG | 0.571174 | tig0041776:-9886 | Msa1461930:five_prime_UTR |
| AGTGGCGCAGGACGCATACT+CGG | 0.578170 | tig0041776:+6664 | Msa1461930:intergenic |
| TGATGAGGCTTTACAAAGAG+AGG | 0.584519 | tig0041776:-8294 | Msa1461930:intron |
| TCCTGAGGTGAAGAATTTGA+GGG | 0.587176 | tig0041776:-6761 | Msa1461930:CDS |
| AGGACGCATACTCGGCTGCA+TGG | 0.587405 | tig0041776:+6672 | Msa1461930:intergenic |
| GAACTTGGGAATATGTTGAC+TGG | 0.591152 | tig0041776:-9120 | Msa1461930:five_prime_UTR |
| GAATTTGTAACCAAATCGAA+TGG | 0.596107 | tig0041776:+10005 | Msa1461930:intergenic |
| AGGAGCCAAGCAATGTGGAC+TGG | 0.600974 | tig0041776:+7826 | Msa1461930:intergenic |
| TTGCTGGAACGTAAGAGAGA+GGG | 0.602319 | tig0041776:+10554 | Msa1461930:intergenic |
| AAGGTGCAGGGTGTATCCTG+CGG | 0.603468 | tig0041776:-9935 | Msa1461930:five_prime_UTR |
| GATCGACGAATCGACTGAGT+AGG | 0.604180 | tig0041776:+8832 | Msa1461930:intergenic |
| TTTGCTGGAACGTAAGAGAG+AGG | 0.610219 | tig0041776:+10553 | Msa1461930:intergenic |
| GAGGTGAAGAATTTGAGGGA+AGG | 0.615886 | tig0041776:-6757 | Msa1461930:CDS |
| TCACTTACGCCAAAACCCGC+AGG | 0.631510 | tig0041776:+9919 | Msa1461930:intergenic |
| CTTGGCCGAACTTTGAACCG+TGG | 0.633002 | tig0041776:-9751 | Msa1461930:five_prime_UTR |
| AGTGTGATGCTCAGAAGGTG+AGG | 0.634388 | tig0041776:-9881 | Msa1461930:five_prime_UTR |
| ATACTCGGCTGCATGGTAGG+AGG | 0.637947 | tig0041776:+6679 | Msa1461930:intergenic |
| TGATAAGCAAGAACTTGATG+AGG | 0.638900 | tig0041776:-8309 | Msa1461930:CDS |
| GCATAGGCCAGAGAAATTGG+AGG | 0.639696 | tig0041776:-9142 | Msa1461930:five_prime_UTR |
| ATCGAGTAGCAGTTCTAACA+GGG | 0.639723 | tig0041776:-6719 | Msa1461930:CDS |
| ATTACCAGCTTGAAATGATG+AGG | 0.641532 | tig0041776:-8036 | Msa1461930:intron |
| CGTAAGTGAGCTATACGGAT+CGG | 0.648406 | tig0041776:-9905 | Msa1461930:five_prime_UTR |
| GCAGATGAGGGAAGAAGACG+AGG | 0.653304 | tig0041776:-8080 | Msa1461930:intron |
| TTGATAGGAGCCAAGCAATG+TGG | 0.673414 | tig0041776:+7821 | Msa1461930:intergenic |
| ATGAGTCATAGCAACATGAG+AGG | 0.680480 | tig0041776:+9853 | Msa1461930:intergenic |
| GCTTGGCTCCTATCAAACTG+TGG | 0.682405 | tig0041776:-7814 | Msa1461930:CDS |
| GCTATCAGCAGAGTATGAAG+GGG | 0.686527 | tig0041776:-9166 | Msa1461930:five_prime_UTR |
| AAAGCACCAAAGACTTACAG+AGG | 0.695404 | tig0041776:+8892 | Msa1461930:intergenic |
| CATGTTGCTATGACTCATGG+AGG | 0.713400 | tig0041776:-9848 | Msa1461930:five_prime_UTR |
| TGTTTCCTAGAAGTCTACTG+CGG | 0.733392 | tig0041776:+6637 | Msa1461920:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACATAATTTCAAAAT+TGG | - | tig0041776:7681-7700 | Msa1461930:intron | 10.0% |
| !!! | TTTTCAATAAAAATTTAAGT+GGG | + | tig0041776:7885-7904 | Msa1461930:intergenic | 10.0% |
| !! | AAAGTTATTAACAAATATAA+TGG | + | tig0041776:8443-8462 | Msa1461930:intergenic | 10.0% |
| !! | CAAAATTAAATACTAAAACA+GGG | + | tig0041776:6805-6824 | Msa1461930:intergenic | 15.0% |
| !!! | AATATTTTTTCATAAGCATA+AGG | + | tig0041776:7826-7845 | Msa1461930:intergenic | 15.0% |
| !! | TTTCAATAAAAATTTAAGTG+GGG | + | tig0041776:7884-7903 | Msa1461930:intergenic | 15.0% |
| !!! | CTTTTCAATAAAAATTTAAG+TGG | + | tig0041776:7886-7905 | Msa1461930:intergenic | 15.0% |
| !! | ATTTGTATAGTTATATGTTA+TGG | - | tig0041776:9522-9541 | Msa1461930:intron | 15.0% |
| !! | CCAAAATTAAATACTAAAAC+AGG | + | tig0041776:6806-6825 | Msa1461930:intergenic | 20.0% |
| !!! | CCTGTTTTAGTATTTAATTT+TGG | - | tig0041776:6803-6822 | Msa1461930:intron | 20.0% |
| !!! | TATTTAATTTTGGTTAGCTA+AGG | - | tig0041776:6813-6832 | Msa1461930:intron | 20.0% |
| !! | GATTTGAGTATTATGAAATT+AGG | - | tig0041776:6855-6874 | Msa1461930:intron | 20.0% |
| !! | TAATCTAAGCATCAAAAAAA+TGG | - | tig0041776:7005-7024 | Msa1461930:intron | 20.0% |
| !! | ATTAATAGCTATTGTTAGTT+TGG | - | tig0041776:7067-7086 | Msa1461930:intron | 20.0% |
| !! | AAAATATAATCTACCCAATT+AGG | + | tig0041776:7555-7574 | Msa1461930:intergenic | 20.0% |
| !! | CTCAATATAAAAAAAGACAT+AGG | + | tig0041776:7725-7744 | Msa1461930:intergenic | 20.0% |
| !!! | TCAAATATCAACTATTTTCA+AGG | + | tig0041776:7973-7992 | Msa1461930:intergenic | 20.0% |
| !! | TGTCATTACAATACAATTTA+TGG | - | tig0041776:8778-8797 | Msa1461930:intron | 20.0% |
| !!! | AAAGGTATCATAAAATCATT+GGG | + | tig0041776:9754-9773 | Msa1461930:intergenic | 20.0% |
| !!! | AAAAGGTATCATAAAATCAT+TGG | + | tig0041776:9755-9774 | Msa1461930:intergenic | 20.0% |
| !! | TTGAATAAAGTTATCAACTT+TGG | - | tig0041776:9793-9812 | Msa1461930:five_prime_UTR | 20.0% |
| !!! | TTGTTGTGTTTATGATTTTA+TGG | - | tig0041776:10050-10069 | Msa1461930:five_prime_UTR | 20.0% |
| !!! | TTATGATTTTATGGTAAGAA+TGG | - | tig0041776:10059-10078 | Msa1461930:five_prime_UTR | 20.0% |
| !! | GAGAATATAGAAGAAAATTA+AGG | - | tig0041776:10130-10149 | Msa1461930:intron | 20.0% |
| !! | TAGAAAGAAAAGTTTGATAA+AGG | - | tig0041776:10287-10306 | Msa1461930:intron | 20.0% |
| !! | AAAATGCCAAATATATTATG+AGG | - | tig0041776:10368-10387 | Msa1461930:intron | 20.0% |
| !! | AAATGACCTCATAATATATT+TGG | + | tig0041776:10377-10396 | Msa1461930:intergenic | 20.0% |
| !! | AAACCTAAAAATGATTGATA+TGG | + | tig0041776:10416-10435 | Msa1461930:intergenic | 20.0% |
| !!! | TCAATCATTTTTAGGTTTTT+TGG | - | tig0041776:10418-10437 | Msa1461930:intron | 20.0% |
| !!! | ATTTTTAGGTTTTTTGGAAT+GGG | - | tig0041776:10424-10443 | Msa1461930:intron | 20.0% |
| ! | AGCAAAAGAAGAAAACAAAA+GGG | - | tig0041776:6686-6705 | Msa1461930:CDS | 25.0% |
| ! | GAGTATTATGAAATTAGGTT+TGG | - | tig0041776:6860-6879 | Msa1461930:intron | 25.0% |
| ! | TATATTAAGCTGAAGTTTGA+AGG | - | tig0041776:6909-6928 | Msa1461930:intron | 25.0% |
| ! | ATGAATGATGAATTTGATGT+TGG | - | tig0041776:6962-6981 | Msa1461930:intron | 25.0% |
| !! | AATTTGATGTTGGTGAAAAT+TGG | - | tig0041776:6972-6991 | Msa1461930:intron | 25.0% |
| ! | TTTAAAGGAGATGATTGTAA+AGG | - | tig0041776:7407-7426 | Msa1461930:intron | 25.0% |
| ! | ATGATTGTAAAGGATTCAAT+TGG | - | tig0041776:7417-7436 | Msa1461930:intron | 25.0% |
| ! | TGATTGTAAAGGATTCAATT+GGG | - | tig0041776:7418-7437 | Msa1461930:intron | 25.0% |
| !! | TATTGAAAAGAAACAGCTTT+TGG | - | tig0041776:7896-7915 | Msa1461930:intron | 25.0% |
| ! | ATATTTGATGTATGTACTTG+TGG | - | tig0041776:7985-8004 | Msa1461930:intron | 25.0% |
| !! | ATTTTCTCACATGCTTAATT+TGG | - | tig0041776:8161-8180 | Msa1461930:intron | 25.0% |
| ! | TTCAAATTGCATATAGAAGA+AGG | - | tig0041776:8202-8221 | Msa1461930:intron | 25.0% |
| ! | AGGATTAAGTTAATGAAGAA+AGG | - | tig0041776:8222-8241 | Msa1461930:intron | 25.0% |
| !! | GAAGAATCAAATTGTTGATT+TGG | - | tig0041776:8353-8372 | Msa1461930:CDS | 25.0% |
| ! | TAAACATTTGTGAGACTATT+TGG | - | tig0041776:8559-8578 | Msa1461930:intron | 25.0% |
| ! | AAACATTTGTGAGACTATTT+GGG | - | tig0041776:8560-8579 | Msa1461930:intron | 25.0% |
| ! | AATAAGATGTTTATCCAAAC+AGG | - | tig0041776:8718-8737 | Msa1461930:intron | 25.0% |
| !! | CATTTATTGATTAAGCATCT+AGG | + | tig0041776:8745-8764 | Msa1461930:intergenic | 25.0% |
| ! | TTGTAATGACATGTAATTAC+AGG | + | tig0041776:8769-8788 | Msa1461930:intergenic | 25.0% |
| ! | CAATACAATTTATGGAATTG+TGG | - | tig0041776:8786-8805 | Msa1461930:intron | 25.0% |
| ! | ATGGCATCATATATTCAATA+AGG | + | tig0041776:8967-8986 | Msa1461930:intergenic | 25.0% |
| !!! | ATTTCTAAAATTTGCAGATG+AGG | - | tig0041776:9129-9148 | Msa1461930:five_prime_UTR | 25.0% |
| !!! | TTTCTAAAATTTGCAGATGA+GGG | - | tig0041776:9130-9149 | Msa1461930:five_prime_UTR | 25.0% |
| !! | ATGAGTTTTTCTAATTTCAG+TGG | - | tig0041776:9283-9302 | Msa1461930:intron | 25.0% |
| ! | GAATTATCCATATGTTAGAT+AGG | + | tig0041776:9362-9381 | Msa1461930:intergenic | 25.0% |
| ! | TATTACCTGGTAATTCATAA+AGG | + | tig0041776:9446-9465 | Msa1461930:intergenic | 25.0% |
| ! | ATAAATCAAGAACTATTACC+TGG | + | tig0041776:9459-9478 | Msa1461930:intergenic | 25.0% |
| !! | TGCATATTTTTCATTTAAGC+TGG | - | tig0041776:9489-9508 | Msa1461930:intron | 25.0% |
| ! | TCTCTAAGTTATTCAAATAG+AGG | - | tig0041776:9613-9632 | Msa1461930:intron | 25.0% |
| ! | TTATCATCAACACAAGAAAT+TGG | + | tig0041776:9700-9719 | Msa1461930:intergenic | 25.0% |
| !!! | AATTTCTTGTGTTGATGATA+AGG | - | tig0041776:9699-9718 | Msa1461930:intron | 25.0% |
| !! | TACCTTTTGAATTTTTGATG+TGG | - | tig0041776:9767-9786 | Msa1461930:five_prime_UTR | 25.0% |
| !! | ACCTTTTGAATTTTTGATGT+GGG | - | tig0041776:9768-9787 | Msa1461930:five_prime_UTR | 25.0% |
| !!! | TTTGGAGTTTTTGATTCAAT+GGG | - | tig0041776:9811-9830 | Msa1461930:five_prime_UTR | 25.0% |
| !!! | TAAAAATTCTGTGCTAGTTT+TGG | - | tig0041776:9913-9932 | Msa1461930:five_prime_UTR | 25.0% |
| !!! | AGAATGGTTGATTTGAAAAT+AGG | - | tig0041776:10075-10094 | Msa1461930:five_prime_UTR | 25.0% |
| ! | TGTATTTGTGAAAGAATTCA+TGG | - | tig0041776:10220-10239 | Msa1461930:intron | 25.0% |
| ! | TTGTTTAACAACATCAATGA+CGG | + | tig0041776:10350-10369 | Msa1461930:intergenic | 25.0% |
| !!! | GTACCATATCAATCATTTTT+AGG | - | tig0041776:10410-10429 | Msa1461930:intron | 25.0% |
| !!! | CATTTTTAGGTTTTTTGGAA+TGG | - | tig0041776:10423-10442 | Msa1461930:intron | 25.0% |
| !!! | CTTTTGTTTTCTTCTTTTGC+TGG | + | tig0041776:6687-6706 | Msa0188020:intergenic | 30.0% |
| CAGCAAAAGAAGAAAACAAA+AGG | - | tig0041776:6685-6704 | Msa1461930:CDS | 30.0% | |
| TTCCTCAATCTCTCTTTAAT+TGG | - | tig0041776:6773-6792 | Msa1461930:CDS | 30.0% | |
| CTCTGTAATTCAGAATTGTT+CGG | - | tig0041776:7164-7183 | Msa1461930:intron | 30.0% | |
| GAATTTGTAACCAAATCGAA+TGG | + | tig0041776:7220-7239 | Msa1461930:intergenic | 30.0% | |
| TCGGAAGAAAATAAGAAACT+TGG | - | tig0041776:7453-7472 | Msa1461930:intron | 30.0% | |
| ACGAGAGAATATTACTATTG+AGG | - | tig0041776:7505-7524 | Msa1461930:intron | 30.0% | |
| TATAATCTACCCAATTAGGA+GGG | + | tig0041776:7551-7570 | Msa1461930:intergenic | 30.0% | |
| ATATAATCTACCCAATTAGG+AGG | + | tig0041776:7552-7571 | Msa1461930:intergenic | 30.0% | |
| CATGCGGTAATTAACTTAAT+TGG | + | tig0041776:7596-7615 | Msa1461930:intergenic | 30.0% | |
| ! | TAATTCGGAGAAACTGTTTT+TGG | - | tig0041776:7635-7654 | Msa1461930:intron | 30.0% |
| ATAAAACCTTTAGCACACAA+AGG | + | tig0041776:7748-7767 | Msa1461930:intergenic | 30.0% | |
| ! | GCATCATATTGACATTTTTC+TGG | - | tig0041776:7856-7875 | Msa1461930:intron | 30.0% |
| AAGCATGTGAGAAAATGATT+TGG | + | tig0041776:8157-8176 | Msa1461930:intergenic | 30.0% | |
| TTCAATATCTGACTCAGTTA+TGG | + | tig0041776:8271-8290 | Msa1461930:intergenic | 30.0% | |
| GTCATAACTTAGTTGTGTTA+TGG | - | tig0041776:8465-8484 | Msa1461930:intron | 30.0% | |
| GACAATAAATGCTACAACAA+TGG | + | tig0041776:8495-8514 | Msa1461930:intergenic | 30.0% | |
| TTGTAGCATTTATTGTCTAG+AGG | - | tig0041776:8498-8517 | Msa1461930:intron | 30.0% | |
| ! | TGTTTGGATTGACTTATTTG+AGG | - | tig0041776:8523-8542 | Msa1461930:intron | 30.0% |
| ! | TTGTGGCAATTTTTGAACTA+AGG | - | tig0041776:8803-8822 | Msa1461930:intron | 30.0% |
| ! | ATGATGCCATTTCATCTATT+TGG | - | tig0041776:8977-8996 | Msa1461930:five_prime_UTR | 30.0% |
| TGAATGCCAAATAGATGAAA+TGG | + | tig0041776:8986-9005 | Msa1461930:intergenic | 30.0% | |
| GTAATCACCTATCTAACATA+TGG | - | tig0041776:9352-9371 | Msa1461930:intron | 30.0% | |
| ATGGATAATTCTCTGAATCT+AGG | - | tig0041776:9371-9390 | Msa1461930:intron | 30.0% | |
| TGAAACCTTTATGAATTACC+AGG | - | tig0041776:9438-9457 | Msa1461930:intron | 30.0% | |
| ACCCACATCAAAAATTCAAA+AGG | + | tig0041776:9772-9791 | Msa1461930:intergenic | 30.0% | |
| !!! | CTTTGGAGTTTTTGATTCAA+TGG | - | tig0041776:9810-9829 | Msa1461930:five_prime_UTR | 30.0% |
| !! | TTGGAGTTTTTGATTCAATG+GGG | - | tig0041776:9812-9831 | Msa1461930:five_prime_UTR | 30.0% |
| ! | TTTGTTTACTGCAGCATTTT+TGG | - | tig0041776:9859-9878 | Msa1461930:five_prime_UTR | 30.0% |
| TAACCACATTTCTTCTTCAA+AGG | + | tig0041776:9950-9969 | Msa1461930:intergenic | 30.0% | |
| AGAAATGTGGTTAATGTATG+AGG | - | tig0041776:9957-9976 | Msa1461930:five_prime_UTR | 30.0% | |
| TTGTGAAAGAATTCATGGTT+TGG | - | tig0041776:10225-10244 | Msa1461930:intron | 30.0% | |
| TGTGAAAGAATTCATGGTTT+GGG | - | tig0041776:10226-10245 | Msa1461930:intron | 30.0% | |
| TTGATAAAGGATATGTGATG+TGG | - | tig0041776:10300-10319 | Msa1461930:intron | 30.0% | |
| CACCAATTAAAGAGAGATTG+AGG | + | tig0041776:6778-6797 | Msa1461930:intergenic | 35.0% | |
| ATTAAGCTGAAGTTTGAAGG+TGG | - | tig0041776:6912-6931 | Msa1461930:intron | 35.0% | |
| TGACTCAATTCCATTCGATT+TGG | - | tig0041776:7207-7226 | Msa1461930:intron | 35.0% | |
| GAAAATACGCTTGAAGTAGA+AGG | - | tig0041776:7268-7287 | Msa1461930:intron | 35.0% | |
| TTCTCCGAATTATCATCACA+GGG | + | tig0041776:7627-7646 | Msa1461930:intergenic | 35.0% | |
| TTTCTCCGAATTATCATCAC+AGG | + | tig0041776:7628-7647 | Msa1461930:intergenic | 35.0% | |
| !!! | ACTGTTTTTGGTCTTGGATA+TGG | - | tig0041776:7647-7666 | Msa1461930:intron | 35.0% |
| ! | AAAGAAACAGCTTTTGGTCA+TGG | - | tig0041776:7902-7921 | Msa1461930:intron | 35.0% |
| !!! | AAGGAGTTTTGGGAATTTGA+TGG | - | tig0041776:8009-8028 | Msa1461930:intron | 35.0% |
| ! | TTGGGAATTTGATGGTTGAT+AGG | - | tig0041776:8017-8036 | Msa1461930:intron | 35.0% |
| ! | TTATTGTCTAGAGGCATGTT+TGG | - | tig0041776:8507-8526 | Msa1461930:intron | 35.0% |
| TAATCATTGTCTTCATGTGC+AGG | - | tig0041776:8843-8862 | Msa1461930:five_prime_UTR | 35.0% | |
| TCAAGTTCTTGCTTATCATC+TGG | + | tig0041776:8911-8930 | Msa1461930:intergenic | 35.0% | |
| TGATAAGCAAGAACTTGATG+AGG | - | tig0041776:8913-8932 | Msa1461930:five_prime_UTR | 35.0% | |
| CATCATTTCAAGCTGGTAAT+TGG | + | tig0041776:9186-9205 | Msa1461930:intergenic | 35.0% | |
| ATTACCAGCTTGAAATGATG+AGG | - | tig0041776:9186-9205 | Msa1461930:five_prime_UTR | 35.0% | |
| AAATCATACGTACCATCCAA+CGG | + | tig0041776:9243-9262 | Msa1461930:intergenic | 35.0% | |
| ! | TCATTTAAGCTGGAGTTTTG+TGG | - | tig0041776:9499-9518 | Msa1461930:intron | 35.0% |
| ! | CACAAGAAATTGGTGACATA+AGG | + | tig0041776:9690-9709 | Msa1461930:intergenic | 35.0% |
| !!! | TGCAGCATTTTTGGTTTTGA+AGG | - | tig0041776:9868-9887 | Msa1461930:five_prime_UTR | 35.0% |
| !!! | AGCATTTTTGGTTTTGAAGG+AGG | - | tig0041776:9871-9890 | Msa1461930:five_prime_UTR | 35.0% |
| !!! | TTTGGTTTTGAAGGAGGAAT+TGG | - | tig0041776:9877-9896 | Msa1461930:five_prime_UTR | 35.0% |
| ! | ACTCCTTTGAAGAAGAAATG+TGG | - | tig0041776:9944-9963 | Msa1461930:five_prime_UTR | 35.0% |
| CGTATAACATGAATTCCAAG+AGG | + | tig0041776:9987-10006 | Msa1461930:intergenic | 35.0% | |
| GTGAAAGAATTCATGGTTTG+GGG | - | tig0041776:10227-10246 | Msa1461930:intron | 35.0% | |
| ! | AACTTTTCTTTCTACGTGCT+TGG | + | tig0041776:10281-10300 | Msa1461930:intergenic | 35.0% |
| AAGAATTTGAGGGAAGGATT+TGG | - | tig0041776:10471-10490 | Msa1461930:five_prime_UTR | 35.0% | |
| AAGAGAGAGGGAAAGAAAGA+AGG | + | tig0041776:6659-6678 | Msa0188020:intergenic | 40.0% | |
| GCAAGAATCACAAGAGATGA+AGG | + | tig0041776:6726-6745 | Msa1461930:intergenic | 40.0% | |
| TAGCTAAGGAGTCAGAAGAA+AGG | - | tig0041776:6827-6846 | Msa1461930:intron | 40.0% | |
| AGCTAAGGAGTCAGAAGAAA+GGG | - | tig0041776:6828-6847 | Msa1461930:intron | 40.0% | |
| GGATTGTTGCTGTACTAGAT+TGG | - | tig0041776:7026-7045 | Msa1461930:intron | 40.0% | |
| ! | AGCTATTGTTAGTTTGGTCG+TGG | - | tig0041776:7073-7092 | Msa1461930:intron | 40.0% |
| AAACGTGAGCTGAAATTTGC+AGG | - | tig0041776:7109-7128 | Msa1461930:intron | 40.0% | |
| TTTGGCGTAAGTGAGCTATA+CGG | - | tig0041776:7312-7331 | Msa1461930:intron | 40.0% | |
| ATGAGTCATAGCAACATGAG+AGG | + | tig0041776:7372-7391 | Msa1461930:intergenic | 40.0% | |
| TCTCATGTTGCTATGACTCA+TGG | - | tig0041776:7371-7390 | Msa1461930:intron | 40.0% | |
| AAGGATTCAATTGGGTCTCT+AGG | - | tig0041776:7426-7445 | Msa1461930:intron | 40.0% | |
| ! | AATTGGGTCTCTAGGAATCT+CGG | - | tig0041776:7434-7453 | Msa1461930:intron | 40.0% |
| ! | GTTTTCCACGGTTCAAAGTT+CGG | + | tig0041776:7479-7498 | Msa1461930:intergenic | 40.0% |
| TTTGAACCGTGGAAAACTCT+TGG | - | tig0041776:7482-7501 | Msa1461930:intron | 40.0% | |
| TTAGGAGGGATCTAAGCTAT+AGG | + | tig0041776:7537-7556 | Msa1461930:intergenic | 40.0% | |
| TAGCTTAGATCCCTCCTAAT+TGG | - | tig0041776:7538-7557 | Msa1461930:intron | 40.0% | |
| AGCTTAGATCCCTCCTAATT+GGG | - | tig0041776:7539-7558 | Msa1461930:intron | 40.0% | |
| GTTGCCCTGTGATGATAATT+CGG | - | tig0041776:7620-7639 | Msa1461930:intron | 40.0% | |
| !!! | GGAGAAACTGTTTTTGGTCT+TGG | - | tig0041776:7641-7660 | Msa1461930:intron | 40.0% |
| ATTGAGCCTTTGTGTGCTAA+AGG | - | tig0041776:7739-7758 | Msa1461930:intron | 40.0% | |
| TGATGTATGTACTTGTGGCA+AGG | - | tig0041776:7990-8009 | Msa1461930:intron | 40.0% | |
| ! | TACTTGTGGCAAGGAGTTTT+GGG | - | tig0041776:7999-8018 | Msa1461930:intron | 40.0% |
| AGCTATCAGCAGAGTATGAA+GGG | - | tig0041776:8055-8074 | Msa1461930:CDS | 40.0% | |
| CAGAGAAATTGGAGGAACTT+GGG | - | tig0041776:8088-8107 | Msa1461930:intron | 40.0% | |
| GAACTTGGGAATATGTTGAC+TGG | - | tig0041776:8102-8121 | Msa1461930:intron | 40.0% | |
| AAGACTCCTCTGTAAGTCTT+TGG | - | tig0041776:8324-8343 | Msa1461930:CDS | 40.0% | |
| ! | AAAGCACCAAAGACTTACAG+AGG | + | tig0041776:8333-8352 | Msa1461930:intergenic | 40.0% |
| TTAAGCATCTAGGTCCTGTT+TGG | + | tig0041776:8735-8754 | Msa1461930:intergenic | 40.0% | |
| TTGTCTTCATGTGCAGGATA+AGG | - | tig0041776:8849-8868 | Msa1461930:five_prime_UTR | 40.0% | |
| TGATGAGGCTTTACAAAGAG+AGG | - | tig0041776:8928-8947 | Msa1461930:five_prime_UTR | 40.0% | |
| GACGAGGAAATTGAAGTTGA+TGG | - | tig0041776:9158-9177 | Msa1461930:five_prime_UTR | 40.0% | |
| !! | AATGATGAGGTGCTTTTGAG+AGG | - | tig0041776:9199-9218 | Msa1461930:five_prime_UTR | 40.0% |
| AGTGTGGACAATAATACCGT+TGG | - | tig0041776:9224-9243 | Msa1461930:intron | 40.0% | |
| TGGACAATAATACCGTTGGA+TGG | - | tig0041776:9228-9247 | Msa1461930:intron | 40.0% | |
| AATCAGCTCCACAGTTTGAT+AGG | + | tig0041776:9419-9438 | Msa1461930:intergenic | 40.0% | |
| !! | TTTTGATTCAATGGGGCTGA+TGG | - | tig0041776:9819-9838 | Msa1461930:five_prime_UTR | 40.0% |
| TTTGATTCAATGGGGCTGAT+GGG | - | tig0041776:9820-9839 | Msa1461930:five_prime_UTR | 40.0% | |
| AATGTATGAGGTTCTCCTCT+TGG | - | tig0041776:9969-9988 | Msa1461930:five_prime_UTR | 40.0% | |
| TCCTGAGGTGAAGAATTTGA+GGG | - | tig0041776:10461-10480 | Msa1461930:five_prime_UTR | 40.0% | |
| ! | ATCGAGTAGCAGTTCTAACA+GGG | - | tig0041776:10503-10522 | Msa1461930:five_prime_UTR | 40.0% |
| TTGCTGGAACGTAAGAGAGA+GGG | + | tig0041776:6671-6690 | Msa0188020:intergenic | 45.0% | |
| TTTGCTGGAACGTAAGAGAG+AGG | + | tig0041776:6672-6691 | Msa0188020:intergenic | 45.0% | |
| GCTAAGGAGTCAGAAGAAAG+GGG | - | tig0041776:6829-6848 | Msa1461930:intron | 45.0% | |
| CTAAGGAGTCAGAAGAAAGG+GGG | - | tig0041776:6830-6849 | Msa1461930:intron | 45.0% | |
| CTGAAATTTGCAGGACATGC+TGG | - | tig0041776:7118-7137 | Msa1461930:intron | 45.0% | |
| CGTAAGTGAGCTATACGGAT+CGG | - | tig0041776:7317-7336 | Msa1461930:intron | 45.0% | |
| CATGTTGCTATGACTCATGG+AGG | - | tig0041776:7374-7393 | Msa1461930:intron | 45.0% | |
| ! | TCTCGTCCAAGAGTTTTCCA+CGG | + | tig0041776:7491-7510 | Msa1461930:intergenic | 45.0% |
| TCACAGGGCAACTAAACATG+CGG | + | tig0041776:7612-7631 | Msa1461930:intergenic | 45.0% | |
| ! | GTACTTGTGGCAAGGAGTTT+TGG | - | tig0041776:7998-8017 | Msa1461930:intron | 45.0% |
| GAGCTATCAGCAGAGTATGA+AGG | - | tig0041776:8054-8073 | Msa1461930:CDS | 45.0% | |
| GCTATCAGCAGAGTATGAAG+GGG | - | tig0041776:8056-8075 | Msa1461930:CDS | 45.0% | |
| CCAAGTTCCTCCAATTTCTC+TGG | + | tig0041776:8090-8109 | Msa1461930:intergenic | 45.0% | |
| CCAGAGAAATTGGAGGAACT+TGG | - | tig0041776:8087-8106 | Msa1461930:intron | 45.0% | |
| !! | ATGTTGACTGGTCTTGATGC+TGG | - | tig0041776:8114-8133 | Msa1461930:intron | 45.0% |
| ACTGAGTAGGATGAGCAGTT+AGG | + | tig0041776:8380-8399 | Msa1461930:intergenic | 45.0% | |
| CGATCTTTGCTGCAAAAGCA+TGG | - | tig0041776:8408-8427 | Msa1461930:intron | 45.0% | |
| ! | CTTTGCTGCAAAAGCATGGA+AGG | - | tig0041776:8412-8431 | Msa1461930:intron | 45.0% |
| AGCACCTCATCATTTCAAGC+TGG | + | tig0041776:9193-9212 | Msa1461930:intergenic | 45.0% | |
| TTGATAGGAGCCAAGCAATG+TGG | + | tig0041776:9404-9423 | Msa1461930:intergenic | 45.0% | |
| ! | GCTTTCTTTTCTGACTCCTG+AGG | - | tig0041776:10446-10465 | Msa1461930:intron | 45.0% |
| CTCCTGAGGTGAAGAATTTG+AGG | - | tig0041776:10460-10479 | Msa1461930:five_prime_UTR | 45.0% | |
| TCCCTCAAATTCTTCACCTC+AGG | + | tig0041776:10465-10484 | Msa1461930:intergenic | 45.0% | |
| GAGGTGAAGAATTTGAGGGA+AGG | - | tig0041776:10465-10484 | Msa1461930:five_prime_UTR | 45.0% | |
| !! | TGAGGGAAGGATTTGGTTTG+AGG | - | tig0041776:10478-10497 | Msa1461930:five_prime_UTR | 45.0% |
| !! | GAGGGAAGGATTTGGTTTGA+GGG | - | tig0041776:10479-10498 | Msa1461930:five_prime_UTR | 45.0% |
| !! | AGGGAAGGATTTGGTTTGAG+GGG | - | tig0041776:10480-10499 | Msa1461930:five_prime_UTR | 45.0% |
| ! | GATCGAGTAGCAGTTCTAAC+AGG | - | tig0041776:10502-10521 | Msa1461930:five_prime_UTR | 45.0% |
| !!! | ATAATATAATTTTTCAAAAT+TGG | - | tig0041776:7947-7966 | Msa1461930:intron | 5.0% |
| GCAGGACATGCTGGTAGTAT+TGG | - | tig0041776:7127-7146 | Msa1461930:intron | 50.0% | |
| ! | ACGCTTGAAGTAGAAGGTGC+AGG | - | tig0041776:7274-7293 | Msa1461930:intron | 50.0% |
| ! | CGCTTGAAGTAGAAGGTGCA+GGG | - | tig0041776:7275-7294 | Msa1461930:intron | 50.0% |
| TCGGTAGTGTGATGCTCAGA+AGG | - | tig0041776:7336-7355 | Msa1461930:intron | 50.0% | |
| AGTGTGATGCTCAGAAGGTG+AGG | - | tig0041776:7341-7360 | Msa1461930:intron | 50.0% | |
| ! | GGAGGCGTATGAGCGTTTAA+AGG | - | tig0041776:7392-7411 | Msa1461930:intron | 50.0% |
| ! | CAGAGTATGAAGGGGAGCAT+AGG | - | tig0041776:8064-8083 | Msa1461930:CDS | 50.0% |
| GGAGCATAGGCCAGAGAAAT+TGG | - | tig0041776:8077-8096 | Msa1461930:CDS | 50.0% | |
| GCATAGGCCAGAGAAATTGG+AGG | - | tig0041776:8080-8099 | Msa1461930:intron | 50.0% | |
| GATCGACGAATCGACTGAGT+AGG | + | tig0041776:8393-8412 | Msa1461930:intergenic | 50.0% | |
| !! | GTGCTTTTGAGAGGTCAGTG+TGG | - | tig0041776:9208-9227 | Msa1461930:five_prime_UTR | 50.0% |
| AGGTACCAGTCCACATTGCT+TGG | - | tig0041776:9391-9410 | Msa1461930:intron | 50.0% | |
| GCTTGGCTCCTATCAAACTG+TGG | - | tig0041776:9408-9427 | Msa1461930:intron | 50.0% | |
| AAGGTGCAGGGTGTATCCTG+CGG | - | tig0041776:7287-7306 | Msa1461930:intron | 55.0% | |
| ! | AGGGTGTATCCTGCGGGTTT+TGG | - | tig0041776:7294-7313 | Msa1461930:intron | 55.0% |
| TCACTTACGCCAAAACCCGC+AGG | + | tig0041776:7306-7325 | Msa1461930:intergenic | 55.0% | |
| CTTGGCCGAACTTTGAACCG+TGG | - | tig0041776:7471-7490 | Msa1461930:intron | 55.0% | |
| GCAGATGAGGGAAGAAGACG+AGG | - | tig0041776:9142-9161 | Msa1461930:five_prime_UTR | 55.0% | |
| AGGAGCCAAGCAATGTGGAC+TGG | + | tig0041776:9399-9418 | Msa1461930:intergenic | 55.0% | |
| ATACTCGGCTGCATGGTAGG+AGG | + | tig0041776:10546-10565 | Msa1461930:intergenic | 55.0% | |
| AGGTGCAGGGTGTATCCTGC+GGG | - | tig0041776:7288-7307 | Msa1461930:intron | 60.0% | |
| CGCATACTCGGCTGCATGGT+AGG | + | tig0041776:10549-10568 | Msa1461930:intergenic | 60.0% | |
| AGGACGCATACTCGGCTGCA+TGG | + | tig0041776:10553-10572 | Msa1461930:intergenic | 60.0% | |
| AGTGGCGCAGGACGCATACT+CGG | + | tig0041776:10561-10580 | Msa1461930:intergenic | 60.0% | |
| CTCGGCTGCATGGTAGGAGG+AGG | + | tig0041776:10543-10562 | Msa1461930:intergenic | 65.0% | |
| TACTGCGGCTGAAGTGGCGC+AGG | + | tig0041776:10573-10592 | Msa1461930:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041776 | gene | 6651 | 10593 | 6651 | ID=Msa1461930;Name=Msa1461930 |
| tig0041776 | mRNA | 6651 | 10593 | 6651 | ID=Msa1461930-mRNA-1;Parent=Msa1461930;Name=Msa1461930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=955|0.5|0.42|0.85|0.66|0.57|7|0|134 |
| tig0041776 | exon | 6651 | 6812 | 6651 | ID=Msa1461930-mRNA-1:exon:23409;Parent=Msa1461930-mRNA-1 |
| tig0041776 | exon | 7785 | 7851 | 7785 | ID=Msa1461930-mRNA-1:exon:23408;Parent=Msa1461930-mRNA-1 |
| tig0041776 | exon | 8037 | 8098 | 8037 | ID=Msa1461930-mRNA-1:exon:23407;Parent=Msa1461930-mRNA-1 |
| tig0041776 | exon | 8295 | 8401 | 8295 | ID=Msa1461930-mRNA-1:exon:23406;Parent=Msa1461930-mRNA-1 |
| tig0041776 | exon | 8811 | 9232 | 8811 | ID=Msa1461930-mRNA-1:exon:23405;Parent=Msa1461930-mRNA-1 |
| tig0041776 | exon | 9718 | 10113 | 9718 | ID=Msa1461930-mRNA-1:exon:23404;Parent=Msa1461930-mRNA-1 |
| tig0041776 | exon | 10450 | 10593 | 10450 | ID=Msa1461930-mRNA-1:exon:23403;Parent=Msa1461930-mRNA-1 |
| tig0041776 | five_prime_UTR | 10450 | 10593 | 10450 | ID=Msa1461930-mRNA-1:five_prime_utr;Parent=Msa1461930-mRNA-1 |
| tig0041776 | five_prime_UTR | 9718 | 10113 | 9718 | ID=Msa1461930-mRNA-1:five_prime_utr;Parent=Msa1461930-mRNA-1 |
| tig0041776 | five_prime_UTR | 8818 | 9232 | 8818 | ID=Msa1461930-mRNA-1:five_prime_utr;Parent=Msa1461930-mRNA-1 |
| tig0041776 | CDS | 8811 | 8817 | 8811 | ID=Msa1461930-mRNA-1:cds;Parent=Msa1461930-mRNA-1 |
| tig0041776 | CDS | 8295 | 8401 | 8295 | ID=Msa1461930-mRNA-1:cds;Parent=Msa1461930-mRNA-1 |
| tig0041776 | CDS | 8037 | 8098 | 8037 | ID=Msa1461930-mRNA-1:cds;Parent=Msa1461930-mRNA-1 |
| tig0041776 | CDS | 7785 | 7851 | 7785 | ID=Msa1461930-mRNA-1:cds;Parent=Msa1461930-mRNA-1 |
| tig0041776 | CDS | 6651 | 6812 | 6651 | ID=Msa1461930-mRNA-1:cds;Parent=Msa1461930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
