Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464630 | AES72114.1 | 88.328 | 1148 | 103 | 9 | 1 | 1136 | 1 | 1129 | 0.0 | 1739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464630 | A0A396J264 | 88.415 | 1148 | 102 | 9 | 1 | 1136 | 1 | 1129 | 0.0 | 1739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1359560 | Msa1464630 | 0.800604 | 1.333099e-48 | -8.615850e-47 |
| Msa1385810 | Msa1464630 | 0.809863 | 1.533462e-50 | -8.615850e-47 |
| Msa1409260 | Msa1464630 | 0.810863 | 9.328867e-51 | -8.615850e-47 |
| Msa1424780 | Msa1464630 | 0.802944 | 4.411966e-49 | -8.615850e-47 |
| Msa0652690 | Msa1464630 | 0.812281 | 4.586908e-51 | -8.615850e-47 |
| Msa0378970 | Msa1464630 | 0.800166 | 1.637331e-48 | -8.615850e-47 |
| Msa0422340 | Msa1464630 | 0.865634 | 5.122401e-65 | -8.615850e-47 |
| Msa0428050 | Msa1464630 | 0.807622 | 4.619767e-50 | -8.615850e-47 |
| Msa0468740 | Msa1464630 | 0.882774 | 7.857549e-71 | -8.615850e-47 |
| Msa0480780 | Msa1464630 | 0.818895 | 1.544014e-52 | -8.615850e-47 |
| Msa1041210 | Msa1464630 | 0.809497 | 1.837339e-50 | -8.615850e-47 |
| Msa1133400 | Msa1464630 | 0.822982 | 1.769498e-53 | -8.615850e-47 |
| Msa1165740 | Msa1464630 | 0.805905 | 1.065188e-49 | -8.615850e-47 |
| Msa0859180 | Msa1464630 | 0.802250 | 6.134509e-49 | -8.615850e-47 |
| Msa0899350 | Msa1464630 | 0.804710 | 1.895925e-49 | -8.615850e-47 |
| Msa0937050 | Msa1464630 | 0.803616 | 3.201898e-49 | -8.615850e-47 |
| Msa0945240 | Msa1464630 | 0.816651 | 4.953485e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464630 | MtrunA17_Chr3g0123261 | 88.415 | 1148 | 102 | 9 | 1 | 1136 | 1 | 1129 | 0.0 | 1739 |
| Msa1464630 | MtrunA17_Chr2g0297201 | 42.529 | 87 | 50 | 0 | 10 | 96 | 8 | 94 | 2.26e-18 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464630 | AT5G37190.2 | 35.570 | 149 | 92 | 2 | 12 | 159 | 15 | 160 | 2.10e-20 | 98.2 |
| Msa1464630 | AT5G37190.3 | 35.570 | 149 | 92 | 2 | 12 | 159 | 15 | 160 | 2.47e-20 | 97.8 |
| Msa1464630 | AT5G37190.1 | 35.570 | 149 | 92 | 2 | 12 | 159 | 15 | 160 | 2.86e-20 | 97.8 |
| Msa1464630 | AT4G00930.3 | 47.500 | 80 | 42 | 0 | 12 | 91 | 15 | 94 | 8.17e-19 | 93.2 |
| Msa1464630 | AT4G00930.2 | 47.500 | 80 | 42 | 0 | 12 | 91 | 15 | 94 | 8.18e-19 | 93.2 |
| Msa1464630 | AT4G00930.5 | 47.500 | 80 | 42 | 0 | 12 | 91 | 15 | 94 | 8.74e-19 | 93.2 |
| Msa1464630 | AT4G00930.4 | 47.500 | 80 | 42 | 0 | 12 | 91 | 15 | 94 | 8.87e-19 | 93.2 |
| Msa1464630 | AT4G00930.1 | 47.500 | 80 | 42 | 0 | 12 | 91 | 15 | 94 | 8.89e-19 | 93.2 |
| Msa1464630 | AT4G00580.1 | 44.444 | 90 | 48 | 2 | 5 | 92 | 1 | 90 | 1.86e-18 | 88.2 |
| Msa1464630 | AT1G30060.1 | 43.182 | 88 | 49 | 1 | 11 | 97 | 9 | 96 | 3.84e-18 | 84.0 |
| Msa1464630 | AT2G01800.2 | 44.828 | 87 | 47 | 1 | 12 | 97 | 10 | 96 | 4.07e-18 | 85.9 |
| Msa1464630 | AT2G01800.3 | 44.828 | 87 | 47 | 1 | 12 | 97 | 10 | 96 | 5.90e-18 | 85.9 |
| Msa1464630 | AT2G01800.1 | 44.828 | 87 | 47 | 1 | 12 | 97 | 10 | 96 | 6.20e-18 | 86.7 |
| Msa1464630 | AT4G00920.1 | 46.512 | 86 | 44 | 1 | 12 | 97 | 15 | 98 | 2.90e-17 | 84.7 |
| Msa1464630 | AT4G00580.2 | 42.169 | 83 | 47 | 1 | 11 | 92 | 1 | 83 | 6.96e-16 | 80.5 |
| Msa1464630 | AT2G02770.1 | 45.745 | 94 | 48 | 3 | 5 | 97 | 1 | 92 | 9.61e-16 | 79.7 |
| Msa1464630 | AT1G55865.1 | 34.091 | 88 | 58 | 0 | 12 | 99 | 9 | 96 | 2.04e-13 | 72.0 |
Find 229 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTGTATTTGTCCGATTT+TGG | 0.076793 | tig0044469:-2995 | Msa1464630:intergenic |
| AATCAGACAGATTGTAAATT+AGG | 0.129571 | tig0044469:+2702 | Msa1464630:five_prime_UTR |
| GTCATCCTTAGTGCCTTTAT+TGG | 0.184884 | tig0044469:-4379 | Msa1464630:intergenic |
| TATATATACTCAAGGGTTTA+TGG | 0.195938 | tig0044469:-2659 | Msa1464630:intergenic |
| TCACATTCAATATGTGAATT+TGG | 0.206092 | tig0044469:-4345 | Msa1464630:intergenic |
| TCGCATTGAGTATGTGAATT+TGG | 0.220669 | tig0044469:-4690 | Msa1464630:intergenic |
| AAAAGAAGCTATAAAGAATT+TGG | 0.234461 | tig0044469:+4314 | Msa1464630:CDS |
| TCAAGCTTTGCAGTTGAAAT+AGG | 0.236952 | tig0044469:-6201 | Msa1464630:intergenic |
| AAATATCGCAACAATGCTTC+TGG | 0.279385 | tig0044469:+6141 | Msa1464630:CDS |
| TGGATCTGATAAAGGCATTA+AGG | 0.283780 | tig0044469:+4719 | Msa1464630:CDS |
| TTCTTAGGCTTCTTCTTTAG+AGG | 0.290983 | tig0044469:-5038 | Msa1464630:intergenic |
| ATCAGACAGATTGTAAATTA+GGG | 0.297305 | tig0044469:+2703 | Msa1464630:five_prime_UTR |
| AATAATGCTTTAGTTGGTTC+TGG | 0.300663 | tig0044469:+3301 | Msa1464630:CDS |
| TGCAGATAAAGAAGTAATTA+AGG | 0.308455 | tig0044469:+4917 | Msa1464630:CDS |
| GCTTGAAGGTTCCAACAAAA+TGG | 0.312808 | tig0044469:+6218 | Msa1464630:CDS |
| TATTCTTCAACAATTGCAAC+TGG | 0.332657 | tig0044469:-3360 | Msa1464630:intergenic |
| GGTTCTGGTGGCGATAATAA+TGG | 0.333510 | tig0044469:+3316 | Msa1464630:CDS |
| GAAGAAAAGCTTGTTGTTAG+AGG | 0.334479 | tig0044469:+6305 | Msa1464630:CDS |
| TGGACCTGGTGGAGGAAATA+AGG | 0.335426 | tig0044469:+3798 | Msa1464630:CDS |
| CATATTGAATGTGAAGTAGA+TGG | 0.341253 | tig0044469:+4015 | Msa1464630:CDS |
| AATATTGAATGTGAAGTAGA+TGG | 0.344604 | tig0044469:+3778 | Msa1464630:CDS |
| CAATGCTTCTGGGAAAAGTA+TGG | 0.345200 | tig0044469:+6152 | Msa1464630:CDS |
| AATACAGATTCATGGCATTA+AGG | 0.348777 | tig0044469:+3008 | Msa1464630:CDS |
| CGGACAATATTCCGCTTAAC+TGG | 0.348908 | tig0044469:-4876 | Msa1464630:intergenic |
| CAAAACGAATCTTGACAAAA+TGG | 0.349538 | tig0044469:+5321 | Msa1464630:CDS |
| TTCTGGGAAAAGTATGGATT+TGG | 0.352289 | tig0044469:+6158 | Msa1464630:CDS |
| CTTTCATGCTTTCCCAAAAT+CGG | 0.353022 | tig0044469:+2982 | Msa1464630:CDS |
| AAGGACAGGGCATAAGATAA+AGG | 0.358550 | tig0044469:+2624 | None:intergenic |
| CTTCGTCAGGTGGAATCTAT+TGG | 0.359366 | tig0044469:+3271 | Msa1464630:CDS |
| GGAAGGGATGGTAATGTTGC+AGG | 0.360140 | tig0044469:+5786 | Msa1464630:CDS |
| ATCATCCTTATTTCTTTCAC+TGG | 0.361468 | tig0044469:-4040 | Msa1464630:intergenic |
| CACCTGAAAATTGTTGAAAC+TGG | 0.364926 | tig0044469:-4565 | Msa1464630:intergenic |
| TGGATCCAGTGAAAGAAATA+AGG | 0.367960 | tig0044469:+4035 | Msa1464630:CDS |
| TACCTGAAAATCATTGAAAC+TGG | 0.372298 | tig0044469:-4220 | Msa1464630:intergenic |
| TTCTGTTAGGTTAAACGTAA+TGG | 0.377573 | tig0044469:+3112 | Msa1464630:intron |
| TCCTGTTTGTTCCTTGATTG+AGG | 0.378018 | tig0044469:-4243 | Msa1464630:intergenic |
| TAAAGGAGGTGTCGCGAATA+TGG | 0.379116 | tig0044469:+3441 | Msa1464630:CDS |
| ATACTCAAGGGTTTATGGTT+TGG | 0.380712 | tig0044469:-2654 | Msa1464630:intergenic |
| CGCGGACAATGCTGATTCCT+TGG | 0.381471 | tig0044469:+5861 | Msa1464630:CDS |
| GTAGAAGATTGTTTGTTGTT+TGG | 0.383134 | tig0044469:-5952 | Msa1464630:intergenic |
| ATTTCAACTGCAAAGCTTGA+AGG | 0.383535 | tig0044469:+6204 | Msa1464630:CDS |
| GAACACATGGGCGATCAAAA+AGG | 0.384695 | tig0044469:-4626 | Msa1464630:intergenic |
| GTTCTTTCTGTGACTGATAA+GGG | 0.384798 | tig0044469:+5826 | Msa1464630:CDS |
| GGAGAATGGTGTCAAATTAC+TGG | 0.387636 | tig0044469:+3462 | Msa1464630:CDS |
| GTTATCCTTCATCAGATCCT+TGG | 0.388542 | tig0044469:-5458 | Msa1464630:intergenic |
| CATACTCAATGCGAGGTAGA+TGG | 0.389642 | tig0044469:+4699 | Msa1464630:CDS |
| AATAAAGCAAGAAAAGCTTC+TGG | 0.390306 | tig0044469:+6246 | Msa1464630:CDS |
| TTCTTTCTTCTCTTTGCACT+TGG | 0.393142 | tig0044469:-3862 | Msa1464630:intergenic |
| ATTGAAACTGGATGTCCTTT+CGG | 0.393196 | tig0044469:-4208 | Msa1464630:intergenic |
| ACCTCATGGTTCACTTCGTC+AGG | 0.399138 | tig0044469:+3258 | Msa1464630:CDS |
| GTTCTGGTGGCGATAATAAT+GGG | 0.403199 | tig0044469:+3317 | Msa1464630:CDS |
| GAAGTAGATGGGCTTGATAA+AGG | 0.404129 | tig0044469:+3583 | Msa1464630:CDS |
| TGTTCTTTCTGTGACTGATA+AGG | 0.406117 | tig0044469:+5825 | Msa1464630:CDS |
| GAAACAAGTGGGCGGTCAAA+AGG | 0.412157 | tig0044469:-4279 | Msa1464630:intergenic |
| CCTATGGAATGTGAAGTAGA+TGG | 0.412757 | tig0044469:+3571 | Msa1464630:CDS |
| AGAGAAAACGGAAGAGTAAG+AGG | 0.422602 | tig0044469:+3665 | Msa1464630:CDS |
| TTATCACTTATCTGATTCAA+TGG | 0.425726 | tig0044469:+3141 | Msa1464630:CDS |
| GAGGACATGGCGCTGTTAGA+TGG | 0.426197 | tig0044469:-6102 | Msa1464630:intergenic |
| TGAAGAATAAGAAAGATAAG+AGG | 0.426865 | tig0044469:+3374 | Msa1464630:CDS |
| CTTCTTCTTTGCACTTTGTA+CGG | 0.427088 | tig0044469:-4778 | Msa1464630:intergenic |
| ATCTGCATTCTCTGCAAAGA+TGG | 0.429838 | tig0044469:-4901 | Msa1464630:intergenic |
| TAAACAAGGTGATATTGAAA+TGG | 0.432155 | tig0044469:+5408 | Msa1464630:CDS |
| AGAAGAAGCATAAGAGTGTA+AGG | 0.435465 | tig0044469:+4793 | Msa1464630:CDS |
| TGTCGAGTCTTGTGTGCATT+TGG | 0.436581 | tig0044469:-6060 | Msa1464630:intergenic |
| AATCTTGACAAAATGGAGAT+TGG | 0.437924 | tig0044469:+5328 | Msa1464630:CDS |
| GCACTTGGCACTGATATTGA+AGG | 0.443827 | tig0044469:-3847 | Msa1464630:intergenic |
| TTATCCTTCATCAGATCCTT+GGG | 0.446924 | tig0044469:-5457 | Msa1464630:intergenic |
| ATCGGACAAATACAGATTCA+TGG | 0.447220 | tig0044469:+3000 | Msa1464630:CDS |
| TCCGGAAAATGCTGCAACAC+AGG | 0.447565 | tig0044469:+5738 | Msa1464630:CDS |
| CATATCTGATGTGCTCTTTG+AGG | 0.447860 | tig0044469:-5974 | None:intergenic |
| AGGACAGGGCATAAGATAAA+GGG | 0.448059 | tig0044469:+2625 | None:intergenic |
| CTCAAGGGTTTATGGTTTGG+TGG | 0.451141 | tig0044469:-2651 | Msa1464630:intergenic |
| GGATCTGATAAAGGCATTAA+GGG | 0.453956 | tig0044469:+4720 | Msa1464630:CDS |
| GCACTTGGCACAGATATTGA+AGG | 0.457016 | tig0044469:-4084 | Msa1464630:intergenic |
| CATACACTTAGAGCAGATAA+TGG | 0.458702 | tig0044469:+5649 | Msa1464630:CDS |
| AAAACCAGCAAAGGAACATA+AGG | 0.459013 | tig0044469:+5594 | Msa1464630:CDS |
| CAGTCTCCAACAAAAGAAAC+AGG | 0.460870 | tig0044469:+5376 | Msa1464630:CDS |
| GAAGAATAAGAAAGATAAGA+GGG | 0.463642 | tig0044469:+3375 | Msa1464630:CDS |
| GCTGGTAAAATCGAGGGAGC+TGG | 0.466007 | tig0044469:+5517 | Msa1464630:CDS |
| TAATTCTATAGAACCTTTGA+AGG | 0.467020 | tig0044469:+5082 | Msa1464630:CDS |
| GGTGTCGATTCACGACAAAA+TGG | 0.471685 | tig0044469:+6462 | Msa1464630:CDS |
| AGAAACTGTTTGTGATCCTC+CGG | 0.472976 | tig0044469:+5720 | Msa1464630:CDS |
| GACTCTATTGTATGTGAGAA+AGG | 0.473574 | tig0044469:+4744 | Msa1464630:CDS |
| AAACCAGCAAAGGAACATAA+GGG | 0.474216 | tig0044469:+5595 | Msa1464630:CDS |
| AGAAGCTCCAAGTTTACCTA+TGG | 0.479624 | tig0044469:+3555 | Msa1464630:CDS |
| CTCTTGACCTTCATCTTCAG+AGG | 0.482855 | tig0044469:-6358 | Msa1464630:intergenic |
| TCACATTCCATAGGTAAACT+TGG | 0.484317 | tig0044469:-3562 | Msa1464630:intergenic |
| GGGAGATACATCATCTCAAA+AGG | 0.486619 | tig0044469:+5103 | Msa1464630:CDS |
| ATTGTGAATAATGCTTTAGT+TGG | 0.487927 | tig0044469:+3295 | Msa1464630:CDS |
| TAAAGAAGAAGCCTAAGAAA+AGG | 0.490052 | tig0044469:+5042 | Msa1464630:CDS |
| TCACATTCAATATTTAAACT+TGG | 0.490981 | tig0044469:-3769 | Msa1464630:intergenic |
| TTATTGGTGTCAACAAAAGC+TGG | 0.491773 | tig0044469:+3179 | Msa1464630:CDS |
| CTGGTAAAATCGAGGGAGCT+GGG | 0.497522 | tig0044469:+5518 | Msa1464630:CDS |
| ACCTCAATCAAGGAACAAAC+AGG | 0.501114 | tig0044469:+4242 | Msa1464630:CDS |
| TCACATTCAATATGTAAACT+TGG | 0.505226 | tig0044469:-4006 | Msa1464630:intergenic |
| TGAACTTGTAAGTAAGAGAC+TGG | 0.506719 | tig0044469:+5921 | Msa1464630:CDS |
| AATATCGCAACAATGCTTCT+GGG | 0.507535 | tig0044469:+6142 | Msa1464630:CDS |
| GTTTCTGAACATACTGCTAA+AGG | 0.510342 | tig0044469:+3424 | Msa1464630:CDS |
| CTTTCGGATGGACAATCGAC+AGG | 0.511134 | tig0044469:-4192 | Msa1464630:intergenic |
| ACGGTACCGGAGTCAGAAAT+CGG | 0.513527 | tig0044469:-2757 | Msa1464630:intergenic |
| AAACTGGATGCCCTTTCAGA+TGG | 0.514071 | tig0044469:-4549 | Msa1464630:intergenic |
| TGCAGAGTGGGAAGAGAAAA+CGG | 0.514904 | tig0044469:+3653 | Msa1464630:CDS |
| GATACGGCGATTCCATTGCT+TGG | 0.515224 | tig0044469:+3493 | Msa1464630:CDS |
| TAGTGTTGATGTTTCTGCAT+TGG | 0.516697 | tig0044469:+3207 | Msa1464630:CDS |
| TATGGATTTGGATAAACAAA+GGG | 0.516899 | tig0044469:+6170 | Msa1464630:CDS |
| AAACAAGTGGGCGGTCAAAA+GGG | 0.517875 | tig0044469:-4278 | Msa1464630:intergenic |
| CGTGTTCATATATATACTCA+AGG | 0.517895 | tig0044469:-2667 | Msa1464630:intergenic |
| CTAAATCAAACTGAAGAGGA+AGG | 0.518575 | tig0044469:+5769 | Msa1464630:CDS |
| ATCGATGAAGACGACGGTAC+CGG | 0.519160 | tig0044469:-2770 | Msa1464630:intergenic |
| TCTGTGTGCTCTGGAACACA+TGG | 0.519830 | tig0044469:-4639 | Msa1464630:intergenic |
| CTGATGGAGCTCACGAGGAA+AGG | 0.521888 | tig0044469:+5141 | Msa1464630:CDS |
| GATGAAGCACAAACGGCTGA+TGG | 0.523174 | tig0044469:+5125 | Msa1464630:CDS |
| TCAAAAGGATGAAGCACAAA+CGG | 0.524012 | tig0044469:+5118 | Msa1464630:CDS |
| GACTCTATTGTATGTGAGGA+AGG | 0.524881 | tig0044469:+4399 | Msa1464630:CDS |
| GAGGTAGATGAATCCAATAA+AGG | 0.524924 | tig0044469:+4366 | Msa1464630:CDS |
| CATTCTCTGCAAAGATGGCT+CGG | 0.525179 | tig0044469:-4896 | Msa1464630:intergenic |
| TTTCTTTCAAAGTGTCATCT+CGG | 0.526131 | tig0044469:-4833 | Msa1464630:intergenic |
| AAGGATAACGAGAATGTTGT+CGG | 0.527978 | tig0044469:+5472 | Msa1464630:CDS |
| CACACGCATACTATTTAGAC+GGG | 0.528271 | tig0044469:+6427 | Msa1464630:CDS |
| CTCTCGACTGTCCATCTGAA+AGG | 0.528617 | tig0044469:+4538 | Msa1464630:CDS |
| CTATGGAATGTGAAGTAGAT+GGG | 0.530261 | tig0044469:+3572 | Msa1464630:CDS |
| CATTGTCATGAAAGTGAAGC+TGG | 0.530304 | tig0044469:+5499 | Msa1464630:CDS |
| AAAATCGAGGGAGCTGGGGA+AGG | 0.530324 | tig0044469:+5523 | Msa1464630:CDS |
| ACATCAGATATGCTCACAAA+TGG | 0.531038 | tig0044469:+5985 | Msa1464630:CDS |
| TGAATCCAATAAAGGCACTA+AGG | 0.531478 | tig0044469:+4374 | Msa1464630:CDS |
| AAAAGAAGCCACTGTGGTAG+GGG | 0.532643 | tig0044469:+3897 | Msa1464630:CDS |
| TCTCGACTGTCCATCTGAAA+GGG | 0.532726 | tig0044469:+4539 | Msa1464630:CDS |
| CGATGTACACAGGATTGATA+AGG | 0.533392 | tig0044469:+6035 | Msa1464630:CDS |
| GAAACACGTGGGTGATCAGA+AGG | 0.536575 | tig0044469:-3940 | Msa1464630:intergenic |
| CGATAATAACACTGCGAACG+AGG | 0.536966 | tig0044469:+4974 | Msa1464630:CDS |
| TCACACGCATACTATTTAGA+CGG | 0.538385 | tig0044469:+6426 | Msa1464630:CDS |
| GATGATGTATCTCCCTTCAA+AGG | 0.545208 | tig0044469:-5095 | Msa1464630:intergenic |
| AAACTGGATGTCCTTTCGGA+TGG | 0.545328 | tig0044469:-4204 | Msa1464630:intergenic |
| AAGAAAAGCTTGTTGTTAGA+GGG | 0.546491 | tig0044469:+6306 | Msa1464630:CDS |
| GAGGTAGATGGATCTGATAA+AGG | 0.552169 | tig0044469:+4711 | Msa1464630:CDS |
| CAGCTTCACTTTCATGACAA+TGG | 0.552308 | tig0044469:-5498 | Msa1464630:intergenic |
| TTGGGCTCATTCACATCTGA+AGG | 0.553810 | tig0044469:-5439 | Msa1464630:intergenic |
| TAGAGCAGATAATGGTCTTG+TGG | 0.553835 | tig0044469:+5657 | Msa1464630:CDS |
| AATCAGATAAGTGATAAAAG+TGG | 0.555386 | tig0044469:-3135 | Msa1464630:intergenic |
| ACGTCTACGATCATCTGTCT+TGG | 0.557416 | tig0044469:-3524 | Msa1464630:intergenic |
| AAATAAAGATGATGATAATG+TGG | 0.557657 | tig0044469:+3606 | Msa1464630:CDS |
| GTATGGATTTGGATAAACAA+AGG | 0.561010 | tig0044469:+6169 | Msa1464630:CDS |
| AATAAGAAAGATAAGAGGGA+AGG | 0.561237 | tig0044469:+3379 | Msa1464630:CDS |
| GTCGGAGACGGTATCGTGAT+CGG | 0.561541 | tig0044469:-2827 | Msa1464630:intergenic |
| AACATCTAATGCTGAAAATG+TGG | 0.561789 | tig0044469:+5897 | Msa1464630:CDS |
| TACAAACCTCGATACTCACT+TGG | 0.566654 | tig0044469:+2792 | Msa1464630:CDS |
| TAGAGGAGATTTGAGTTCTG+AGG | 0.567085 | tig0044469:-5021 | Msa1464630:intergenic |
| GTCAGATGGAGTTCTAGTGC+TGG | 0.567675 | tig0044469:-6400 | Msa1464630:intergenic |
| AGCTATAAAGAATTTGGAGA+TGG | 0.567916 | tig0044469:+4320 | Msa1464630:CDS |
| AGATGATGATAATGTGGGTG+TGG | 0.568988 | tig0044469:+3612 | Msa1464630:CDS |
| TCTTCTAAATCAAACTGAAG+AGG | 0.569044 | tig0044469:+5765 | Msa1464630:CDS |
| AGCTGTCACACATTTGGAGA+TGG | 0.570498 | tig0044469:+4665 | Msa1464630:CDS |
| AATGCTTTAGTTGGTTCTGG+TGG | 0.570622 | tig0044469:+3304 | Msa1464630:CDS |
| GACGGTATCGTGATCGGAGA+CGG | 0.572722 | tig0044469:-2821 | Msa1464630:intergenic |
| CTGTTGTTGTACCAGTTAAG+CGG | 0.572827 | tig0044469:+4865 | Msa1464630:CDS |
| ATTCTTCAACAATTGCAACT+GGG | 0.574037 | tig0044469:-3359 | Msa1464630:intergenic |
| GGTTAATGCTGTGACAATGA+AGG | 0.574150 | tig0044469:+4995 | Msa1464630:CDS |
| TTGGAGTTTGAACCAAGCAA+TGG | 0.575376 | tig0044469:-3505 | Msa1464630:intergenic |
| ATTACTGGGTGATAATGATA+CGG | 0.575467 | tig0044469:+3477 | Msa1464630:CDS |
| GTGTTCATATATATACTCAA+GGG | 0.576015 | tig0044469:-2666 | Msa1464630:intergenic |
| CCGGAAAATGCTGCAACACA+GGG | 0.576365 | tig0044469:+5739 | Msa1464630:CDS |
| GAAGGGATGGTAATGTTGCA+GGG | 0.579243 | tig0044469:+5787 | Msa1464630:CDS |
| GCAACACGCAGACGATCAGA+AGG | 0.583703 | tig0044469:-3703 | Msa1464630:intergenic |
| AGAAAGAGCGCGATGTACAC+AGG | 0.584380 | tig0044469:+6025 | Msa1464630:CDS |
| CTTCAATGTCTGTGCAGAGT+GGG | 0.585400 | tig0044469:+3641 | Msa1464630:CDS |
| TCATCCTTATTTCCTCCACC+AGG | 0.586395 | tig0044469:-3802 | Msa1464630:intergenic |
| TCAAACTGAAGAGGAAGGGA+TGG | 0.587094 | tig0044469:+5774 | Msa1464630:CDS |
| TGAGCCCAAGGATCTGATGA+AGG | 0.587164 | tig0044469:+5453 | Msa1464630:CDS |
| TGACGACGTGAATAGAATGA+AGG | 0.588356 | tig0044469:+5564 | Msa1464630:CDS |
| AGCAGTTCCTCTGAAGATGA+AGG | 0.592851 | tig0044469:+6351 | Msa1464630:CDS |
| CCATCTACTTCACATTCCAT+AGG | 0.594220 | tig0044469:-3571 | Msa1464630:intergenic |
| AAATTCACATATTGAATGTG+AGG | 0.595332 | tig0044469:+4347 | Msa1464630:CDS |
| TGCGTAAGCAGTGTGCGAGA+TGG | 0.595355 | tig0044469:+2729 | Msa1464630:exon |
| AGCTTCTGGAAATCATGTCA+TGG | 0.596316 | tig0044469:+6260 | Msa1464630:CDS |
| AAAGGTAAGAATAAAGGCGG+AGG | 0.597083 | tig0044469:+5625 | Msa1464630:CDS |
| GGTGTCGCGAATATGGAGAA+TGG | 0.597432 | tig0044469:+3448 | Msa1464630:CDS |
| CAGTGTTACGTGAAACAAGT+GGG | 0.602671 | tig0044469:-4290 | Msa1464630:intergenic |
| TAAATCAAACTGAAGAGGAA+GGG | 0.603370 | tig0044469:+5770 | Msa1464630:CDS |
| AATTCTATAGAACCTTTGAA+GGG | 0.604101 | tig0044469:+5083 | Msa1464630:CDS |
| TCATGGTTCACTTCGTCAGG+TGG | 0.604108 | tig0044469:+3261 | Msa1464630:CDS |
| GGATGACTCTATTGTATGTG+AGG | 0.604480 | tig0044469:+4395 | Msa1464630:CDS |
| TTCAGATGTGAATGAGCCCA+AGG | 0.607289 | tig0044469:+5441 | Msa1464630:CDS |
| CTTTCAGATGGACAGTCGAG+AGG | 0.612247 | tig0044469:-4537 | Msa1464630:intergenic |
| GTAGGGGATAGATCAAAAGA+AGG | 0.614468 | tig0044469:+3913 | Msa1464630:CDS |
| GAAGTAGATGGACCTGGTGG+AGG | 0.614605 | tig0044469:+3790 | Msa1464630:CDS |
| TGTTGCAGAGCAGAATGAAA+AGG | 0.617143 | tig0044469:+3720 | Msa1464630:CDS |
| TGAAGATGAAGGTCAAGAGA+AGG | 0.620985 | tig0044469:+6362 | Msa1464630:CDS |
| TTAGACGGGAATGACAGTCC+AGG | 0.621565 | tig0044469:+6441 | Msa1464630:CDS |
| GGAACCTGTAAAACCAGCAA+AGG | 0.623921 | tig0044469:+5585 | Msa1464630:CDS |
| CTGTCGATTGTCCATCCGAA+AGG | 0.624082 | tig0044469:+4193 | Msa1464630:CDS |
| AAGGGATGGTAATGTTGCAG+GGG | 0.628382 | tig0044469:+5788 | Msa1464630:CDS |
| AATAAAGATGATGATAATGT+GGG | 0.628938 | tig0044469:+3607 | Msa1464630:CDS |
| AACGGCTGATGGAGCTCACG+AGG | 0.630247 | tig0044469:+5136 | Msa1464630:CDS |
| AACCAGCAAAGGAACATAAG+GGG | 0.634243 | tig0044469:+5596 | Msa1464630:CDS |
| TGGTAAAATCGAGGGAGCTG+GGG | 0.636192 | tig0044469:+5519 | Msa1464630:CDS |
| GAGAATGGTGTCAAATTACT+GGG | 0.636399 | tig0044469:+3463 | Msa1464630:CDS |
| AAACACGTGGGTGATCAGAA+GGG | 0.637541 | tig0044469:-3939 | Msa1464630:intergenic |
| AGTGAAGCTGGTAAAATCGA+GGG | 0.640437 | tig0044469:+5511 | Msa1464630:CDS |
| GGACAGGGCATAAGATAAAG+GGG | 0.643211 | tig0044469:+2626 | None:intergenic |
| ACCAGCAAAGGAACATAAGG+GGG | 0.644082 | tig0044469:+5597 | Msa1464630:CDS |
| TCAGTGTTACGTGAAACAAG+TGG | 0.647489 | tig0044469:-4291 | Msa1464630:intergenic |
| TATGCGTGTGAATTGTCAGA+TGG | 0.648565 | tig0044469:-6414 | Msa1464630:intergenic |
| CAACACGCAGACGATCAGAA+GGG | 0.649775 | tig0044469:-3702 | Msa1464630:intergenic |
| AACACGCAGACGATCAGAAG+GGG | 0.653252 | tig0044469:-3701 | Msa1464630:intergenic |
| TGATCTATCCCCTACCACAG+TGG | 0.654268 | tig0044469:-3905 | Msa1464630:intergenic |
| GAGGAAAGGAAAGAATCAGA+AGG | 0.654785 | tig0044469:+5155 | Msa1464630:CDS |
| AGGGATGGTAATGTTGCAGG+GGG | 0.659114 | tig0044469:+5789 | Msa1464630:CDS |
| TAATGCTGTGACAATGAAGG+AGG | 0.660473 | tig0044469:+4998 | Msa1464630:CDS |
| CTTGGCACTGATATTGAAGG+TGG | 0.661039 | tig0044469:-3844 | Msa1464630:intergenic |
| TGACAAAATGGAGATTGGAG+CGG | 0.661881 | tig0044469:+5333 | Msa1464630:CDS |
| TCTTCAATGTCTGTGCAGAG+TGG | 0.662030 | tig0044469:+3640 | Msa1464630:CDS |
| CTGTGTGCTCTGGAACACAT+GGG | 0.664614 | tig0044469:-4638 | Msa1464630:intergenic |
| AAGTGAAGCTGGTAAAATCG+AGG | 0.665943 | tig0044469:+5510 | Msa1464630:CDS |
| AAATTCACATACTCAATGCG+AGG | 0.667311 | tig0044469:+4692 | Msa1464630:CDS |
| GGTTCTATAGAATTATGAGT+CGG | 0.668323 | tig0044469:-5074 | Msa1464630:intergenic |
| AATTGCAACTGGGAATCACA+AGG | 0.668666 | tig0044469:-3349 | Msa1464630:intergenic |
| GCAGTATGTTCAGAAACACA+AGG | 0.673143 | tig0044469:-3418 | Msa1464630:intergenic |
| ACAGGAAATAATAATAAACA+AGG | 0.678613 | tig0044469:+5394 | Msa1464630:CDS |
| GCGACGCCGATTTCTGACTC+CGG | 0.688844 | tig0044469:+2751 | Msa1464630:CDS |
| TCAGTGTGCTCTGAAACACG+TGG | 0.697465 | tig0044469:-3952 | Msa1464630:intergenic |
| TCTGAACATACTGCTAAAGG+AGG | 0.700816 | tig0044469:+3427 | Msa1464630:CDS |
| GAATGTGAAGTAGATGGACC+TGG | 0.706472 | tig0044469:+3784 | Msa1464630:CDS |
| CAGTATGTTCAGAAACACAA+GGG | 0.708570 | tig0044469:-3417 | Msa1464630:intergenic |
| TGAGAGCCAAGTGAGTATCG+AGG | 0.730669 | tig0044469:-2798 | Msa1464630:intergenic |
| CAGTGTGCTCTGAAACACGT+GGG | 0.731588 | tig0044469:-3951 | Msa1464630:intergenic |
| TGTGAAGTAGATGGACCTGG+TGG | 0.732563 | tig0044469:+3787 | Msa1464630:CDS |
| GTTTGTATCGATGAAGACGA+CGG | 0.749057 | tig0044469:-2776 | Msa1464620:intergenic |
| TGTTACGTGAAACAAGTGGG+CGG | 0.765301 | tig0044469:-4287 | Msa1464620:intergenic |
| ACCTGACGAAGTGAACCATG+AGG | 0.777791 | tig0044469:-3259 | Msa1464620:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAACACAAAAATTAAT+AGG | - | tig0044469:5221-5240 | Msa1464630:intergenic | 10.0% |
| !!! | AAATAAAGATGATGATAATG+TGG | + | tig0044469:3606-3625 | Msa1464630:CDS | 20.0% |
| !!! | AATAAAGATGATGATAATGT+GGG | + | tig0044469:3607-3626 | Msa1464630:CDS | 20.0% |
| !! | TCACATTCAATATTTAAACT+TGG | - | tig0044469:3772-3791 | Msa1464630:intergenic | 20.0% |
| !! | AAAAGAAGCTATAAAGAATT+TGG | + | tig0044469:4314-4333 | Msa1464630:CDS | 20.0% |
| !! | TAACACAAAAATTAATAGGA+AGG | - | tig0044469:5217-5236 | Msa1464630:intergenic | 20.0% |
| !! | CCACAAAAATAACAATAATT+GGG | - | tig0044469:5284-5303 | Msa1464630:intergenic | 20.0% |
| !!! | CCAATTATTGTTATTTTTGT+GGG | + | tig0044469:5282-5301 | Msa1464630:intron | 20.0% |
| !! | ACAGGAAATAATAATAAACA+AGG | + | tig0044469:5394-5413 | Msa1464630:CDS | 20.0% |
| !! | GTAAAAAAAGGTAAGAATAA+AGG | + | tig0044469:5619-5638 | Msa1464630:CDS | 20.0% |
| !!! | TTTATTTTGAACCATTTTGT+TGG | - | tig0044469:6232-6251 | Msa1464630:intergenic | 20.0% |
| ! | TATATATACTCAAGGGTTTA+TGG | - | tig0044469:2662-2681 | None:intergenic | 25.0% |
| ! | GTGTTCATATATATACTCAA+GGG | - | tig0044469:2669-2688 | None:intergenic | 25.0% |
| ! | AATCAGACAGATTGTAAATT+AGG | + | tig0044469:2702-2721 | Msa1464630:five_prime_UTR | 25.0% |
| ! | ATCAGACAGATTGTAAATTA+GGG | + | tig0044469:2703-2722 | Msa1464630:five_prime_UTR | 25.0% |
| ! | AATCATTATTTGAACAACAG+TGG | - | tig0044469:3049-3068 | Msa1464630:intergenic | 25.0% |
| !!! | TATTCGTTTTTGTTTCTGTT+AGG | + | tig0044469:3099-3118 | Msa1464630:intron | 25.0% |
| ! | AATCAGATAAGTGATAAAAG+TGG | - | tig0044469:3138-3157 | Msa1464630:intergenic | 25.0% |
| ! | TTATCACTTATCTGATTCAA+TGG | + | tig0044469:3141-3160 | Msa1464630:CDS | 25.0% |
| !! | TGAGGTAACAATTTTTCATT+CGG | - | tig0044469:3244-3263 | Msa1464630:intergenic | 25.0% |
| ! | AATGAAAAATTGTTACCTCA+TGG | + | tig0044469:3244-3263 | Msa1464630:CDS | 25.0% |
| ! | ATTGTGAATAATGCTTTAGT+TGG | + | tig0044469:3295-3314 | Msa1464630:CDS | 25.0% |
| ! | TGAAGAATAAGAAAGATAAG+AGG | + | tig0044469:3374-3393 | Msa1464630:CDS | 25.0% |
| ! | GAAGAATAAGAAAGATAAGA+GGG | + | tig0044469:3375-3394 | Msa1464630:CDS | 25.0% |
| ! | AATATTGAATGTGAAGTAGA+TGG | + | tig0044469:3778-3797 | Msa1464630:CDS | 25.0% |
| ! | TCACATTCAATATGTAAACT+TGG | - | tig0044469:4009-4028 | Msa1464630:intergenic | 25.0% |
| ! | AAAGAATAAGAAAAACACTG+TGG | + | tig0044469:4128-4147 | Msa1464630:CDS | 25.0% |
| ! | AAGAATAAGAAAAACACTGT+GGG | + | tig0044469:4129-4148 | Msa1464630:CDS | 25.0% |
| ! | TCACATTCAATATGTGAATT+TGG | - | tig0044469:4348-4367 | Msa1464630:intergenic | 25.0% |
| ! | AAATTCACATATTGAATGTG+AGG | + | tig0044469:4347-4366 | Msa1464630:CDS | 25.0% |
| ! | AAAGAAAAAAAAAGACACTG+TGG | + | tig0044469:4473-4492 | Msa1464630:CDS | 25.0% |
| ! | AAGAAAAAAAAAGACACTGT+GGG | + | tig0044469:4474-4493 | Msa1464630:CDS | 25.0% |
| ! | TGCAGATAAAGAAGTAATTA+AGG | + | tig0044469:4917-4936 | Msa1464630:CDS | 25.0% |
| ! | TAATTCTATAGAACCTTTGA+AGG | + | tig0044469:5082-5101 | Msa1464630:CDS | 25.0% |
| ! | AATTCTATAGAACCTTTGAA+GGG | + | tig0044469:5083-5102 | Msa1464630:CDS | 25.0% |
| !!! | CCCAATTATTGTTATTTTTG+TGG | + | tig0044469:5281-5300 | Msa1464630:intron | 25.0% |
| ! | CCCACAAAAATAACAATAAT+TGG | - | tig0044469:5285-5304 | Msa1464630:intergenic | 25.0% |
| !!! | TTATTTCCTGTTTCTTTTGT+TGG | - | tig0044469:5385-5404 | Msa1464630:intergenic | 25.0% |
| ! | TAAACAAGGTGATATTGAAA+TGG | + | tig0044469:5408-5427 | Msa1464630:CDS | 25.0% |
| ! | AAAAAAGGTAAGAATAAAGG+CGG | + | tig0044469:5622-5641 | Msa1464630:CDS | 25.0% |
| !! | TTTTCGATTTTCAACAATTG+AGG | - | tig0044469:6124-6143 | Msa1464630:intergenic | 25.0% |
| ! | TATGGATTTGGATAAACAAA+GGG | + | tig0044469:6170-6189 | Msa1464630:CDS | 25.0% |
| CGTGTTCATATATATACTCA+AGG | - | tig0044469:2670-2689 | None:intergenic | 30.0% | |
| TTCATGCTTCTTATATGTAG+AGG | + | tig0044469:2942-2961 | Msa1464630:intron | 30.0% | |
| ! | ATCTGTATTTGTCCGATTTT+GGG | - | tig0044469:2997-3016 | Msa1464630:intergenic | 30.0% |
| ! | AATCTGTATTTGTCCGATTT+TGG | - | tig0044469:2998-3017 | Msa1464630:intergenic | 30.0% |
| AATACAGATTCATGGCATTA+AGG | + | tig0044469:3008-3027 | Msa1464630:CDS | 30.0% | |
| TTCTGTTAGGTTAAACGTAA+TGG | + | tig0044469:3112-3131 | Msa1464630:intron | 30.0% | |
| ! | AATAATGCTTTAGTTGGTTC+TGG | + | tig0044469:3301-3320 | Msa1464630:CDS | 30.0% |
| ATTCTTCAACAATTGCAACT+GGG | - | tig0044469:3362-3381 | Msa1464630:intergenic | 30.0% | |
| TATTCTTCAACAATTGCAAC+TGG | - | tig0044469:3363-3382 | Msa1464630:intergenic | 30.0% | |
| AATAAGAAAGATAAGAGGGA+AGG | + | tig0044469:3379-3398 | Msa1464630:CDS | 30.0% | |
| ! | ATTACTGGGTGATAATGATA+CGG | + | tig0044469:3477-3496 | Msa1464630:CDS | 30.0% |
| AAAGGATGCTGTCAAAAATT+CGG | + | tig0044469:3738-3757 | Msa1464630:CDS | 30.0% | |
| AGAAGCTGTGAAAAATTTAG+AGG | + | tig0044469:3978-3997 | Msa1464630:CDS | 30.0% | |
| CATATTGAATGTGAAGTAGA+TGG | + | tig0044469:4015-4034 | Msa1464630:CDS | 30.0% | |
| ! | ATCATCCTTATTTCTTTCAC+TGG | - | tig0044469:4043-4062 | Msa1464630:intergenic | 30.0% |
| ! | ATCCAGTTTCAATGATTTTC+AGG | + | tig0044469:4218-4237 | Msa1464630:CDS | 30.0% |
| TACCTGAAAATCATTGAAAC+TGG | - | tig0044469:4223-4242 | Msa1464630:intergenic | 30.0% | |
| AGCTATAAAGAATTTGGAGA+TGG | + | tig0044469:4320-4339 | Msa1464630:CDS | 30.0% | |
| ! | TTCTTCTTTTTCTTTGCACT+TGG | - | tig0044469:4441-4460 | Msa1464630:intergenic | 30.0% |
| ! | ATCCAGTTTCAACAATTTTC+AGG | + | tig0044469:4563-4582 | Msa1464630:CDS | 30.0% |
| ! | TTTCTTTCAAAGTGTCATCT+CGG | - | tig0044469:4836-4855 | Msa1464630:intergenic | 30.0% |
| TAAAGAAGAAGCCTAAGAAA+AGG | + | tig0044469:5042-5061 | Msa1464630:CDS | 30.0% | |
| GGTTCTATAGAATTATGAGT+CGG | - | tig0044469:5077-5096 | Msa1464630:intergenic | 30.0% | |
| CAAAACGAATCTTGACAAAA+TGG | + | tig0044469:5321-5340 | Msa1464630:CDS | 30.0% | |
| AATCTTGACAAAATGGAGAT+TGG | + | tig0044469:5328-5347 | Msa1464630:CDS | 30.0% | |
| TCTTCTAAATCAAACTGAAG+AGG | + | tig0044469:5765-5784 | Msa1464630:CDS | 30.0% | |
| TAAATCAAACTGAAGAGGAA+GGG | + | tig0044469:5770-5789 | Msa1464630:CDS | 30.0% | |
| AACATCTAATGCTGAAAATG+TGG | + | tig0044469:5897-5916 | Msa1464630:CDS | 30.0% | |
| !! | GTAGAAGATTGTTTGTTGTT+TGG | - | tig0044469:5955-5974 | Msa1464630:intergenic | 30.0% |
| ! | ATTTTCAACAATTGAGGACA+TGG | - | tig0044469:6118-6137 | Msa1464630:intergenic | 30.0% |
| GTATGGATTTGGATAAACAA+AGG | + | tig0044469:6169-6188 | Msa1464630:CDS | 30.0% | |
| AATAAAGCAAGAAAAGCTTC+TGG | + | tig0044469:6246-6265 | Msa1464630:CDS | 30.0% | |
| !! | AAGAAAAGCTTGTTGTTAGA+GGG | + | tig0044469:6306-6325 | Msa1464630:CDS | 30.0% |
| ATACTCAAGGGTTTATGGTT+TGG | - | tig0044469:2657-2676 | None:intergenic | 35.0% | |
| !!! | AGAGAGATTACTTTTGAGGT+CGG | - | tig0044469:2848-2867 | Msa1464630:intergenic | 35.0% |
| !! | AGAGAGAGAGATTACTTTTG+AGG | - | tig0044469:2852-2871 | Msa1464630:intergenic | 35.0% |
| CTTTCATGCTTTCCCAAAAT+CGG | + | tig0044469:2982-3001 | Msa1464630:CDS | 35.0% | |
| ATCGGACAAATACAGATTCA+TGG | + | tig0044469:3000-3019 | Msa1464630:CDS | 35.0% | |
| !!! | GTTGTGAGAAGTGCTTTTAT+TGG | + | tig0044469:3163-3182 | Msa1464630:CDS | 35.0% |
| !! | TTATTGGTGTCAACAAAAGC+TGG | + | tig0044469:3179-3198 | Msa1464630:CDS | 35.0% |
| !! | TAGTGTTGATGTTTCTGCAT+TGG | + | tig0044469:3207-3226 | Msa1464630:CDS | 35.0% |
| CAGTATGTTCAGAAACACAA+GGG | - | tig0044469:3420-3439 | Msa1464630:intergenic | 35.0% | |
| GTTTCTGAACATACTGCTAA+AGG | + | tig0044469:3424-3443 | Msa1464630:CDS | 35.0% | |
| ! | GAGAATGGTGTCAAATTACT+GGG | + | tig0044469:3463-3482 | Msa1464630:CDS | 35.0% |
| TCACATTCCATAGGTAAACT+TGG | - | tig0044469:3565-3584 | Msa1464630:intergenic | 35.0% | |
| CTATGGAATGTGAAGTAGAT+GGG | + | tig0044469:3572-3591 | Msa1464630:CDS | 35.0% | |
| TTCTTTCTTCTCTTTGCACT+TGG | - | tig0044469:3865-3884 | Msa1464630:intergenic | 35.0% | |
| AAAGAAAAAAGAAGCCACTG+TGG | + | tig0044469:3891-3910 | Msa1464630:CDS | 35.0% | |
| AGCTGTGAAAAATTTAGAGG+TGG | + | tig0044469:3981-4000 | Msa1464630:CDS | 35.0% | |
| TGGATCCAGTGAAAGAAATA+AGG | + | tig0044469:4035-4054 | Msa1464630:CDS | 35.0% | |
| !!! | TTGCTTTTTCTCTTTGCACT+TGG | - | tig0044469:4102-4121 | Msa1464630:intergenic | 35.0% |
| AATAAGAAAAACACTGTGGG+AGG | + | tig0044469:4132-4151 | Msa1464630:CDS | 35.0% | |
| ATTGAAACTGGATGTCCTTT+CGG | - | tig0044469:4211-4230 | Msa1464630:intergenic | 35.0% | |
| !!! | ATTTTCAGGTACCTCAATCA+AGG | + | tig0044469:4232-4251 | Msa1464630:CDS | 35.0% |
| GAGGTAGATGAATCCAATAA+AGG | + | tig0044469:4366-4385 | Msa1464630:CDS | 35.0% | |
| !! | TGAATCCAATAAAGGCACTA+AGG | + | tig0044469:4374-4393 | Msa1464630:CDS | 35.0% |
| AAAAAAAAAGACACTGTGGG+AGG | + | tig0044469:4477-4496 | Msa1464630:CDS | 35.0% | |
| CACCTGAAAATTGTTGAAAC+TGG | - | tig0044469:4568-4587 | Msa1464630:intergenic | 35.0% | |
| AGAAAAAGCTGTCACACATT+TGG | + | tig0044469:4659-4678 | Msa1464630:CDS | 35.0% | |
| TCGCATTGAGTATGTGAATT+TGG | - | tig0044469:4693-4712 | Msa1464630:intergenic | 35.0% | |
| AAATTCACATACTCAATGCG+AGG | + | tig0044469:4692-4711 | Msa1464630:CDS | 35.0% | |
| !! | TGGATCTGATAAAGGCATTA+AGG | + | tig0044469:4719-4738 | Msa1464630:CDS | 35.0% |
| !! | GGATCTGATAAAGGCATTAA+GGG | + | tig0044469:4720-4739 | Msa1464630:CDS | 35.0% |
| GACTCTATTGTATGTGAGAA+AGG | + | tig0044469:4744-4763 | Msa1464630:CDS | 35.0% | |
| CTTCTTCTTTGCACTTTGTA+CGG | - | tig0044469:4781-4800 | Msa1464630:intergenic | 35.0% | |
| ! | AGAAGAAGCATAAGAGTGTA+AGG | + | tig0044469:4793-4812 | Msa1464630:CDS | 35.0% |
| !! | TAAGGCAACTGAAGTTTTGA+AGG | + | tig0044469:4935-4954 | Msa1464630:CDS | 35.0% |
| TTCTTAGGCTTCTTCTTTAG+AGG | - | tig0044469:5041-5060 | Msa1464630:intergenic | 35.0% | |
| TCAAAAGGATGAAGCACAAA+CGG | + | tig0044469:5118-5137 | Msa1464630:CDS | 35.0% | |
| AGGTGATACTACTCAGTAAA+TGG | + | tig0044469:5175-5194 | Msa1464630:intron | 35.0% | |
| GGTGATACTACTCAGTAAAT+GGG | + | tig0044469:5176-5195 | Msa1464630:intron | 35.0% | |
| TTATCCTTCATCAGATCCTT+GGG | - | tig0044469:5460-5479 | Msa1464630:intergenic | 35.0% | |
| AAGGATAACGAGAATGTTGT+CGG | + | tig0044469:5472-5491 | Msa1464630:CDS | 35.0% | |
| AAAACCAGCAAAGGAACATA+AGG | + | tig0044469:5594-5613 | Msa1464630:CDS | 35.0% | |
| AAACCAGCAAAGGAACATAA+GGG | + | tig0044469:5595-5614 | Msa1464630:CDS | 35.0% | |
| GAACATAAGGGGGTAAAAAA+AGG | + | tig0044469:5607-5626 | Msa1464630:CDS | 35.0% | |
| CATACACTTAGAGCAGATAA+TGG | + | tig0044469:5649-5668 | Msa1464630:CDS | 35.0% | |
| CTAAATCAAACTGAAGAGGA+AGG | + | tig0044469:5769-5788 | Msa1464630:CDS | 35.0% | |
| TGTTCTTTCTGTGACTGATA+AGG | + | tig0044469:5825-5844 | Msa1464630:CDS | 35.0% | |
| GTTCTTTCTGTGACTGATAA+GGG | + | tig0044469:5826-5845 | Msa1464630:CDS | 35.0% | |
| !!! | TGTTGTTTTAGTTTGCTCCA+AGG | - | tig0044469:5881-5900 | Msa1464630:intergenic | 35.0% |
| TGAACTTGTAAGTAAGAGAC+TGG | + | tig0044469:5921-5940 | Msa1464630:CDS | 35.0% | |
| ACATCAGATATGCTCACAAA+TGG | + | tig0044469:5985-6004 | Msa1464630:CDS | 35.0% | |
| AAATATCGCAACAATGCTTC+TGG | + | tig0044469:6141-6160 | Msa1464630:CDS | 35.0% | |
| AATATCGCAACAATGCTTCT+GGG | + | tig0044469:6142-6161 | Msa1464630:CDS | 35.0% | |
| ! | TTCTGGGAAAAGTATGGATT+TGG | + | tig0044469:6158-6177 | Msa1464630:CDS | 35.0% |
| TCAAGCTTTGCAGTTGAAAT+AGG | - | tig0044469:6204-6223 | Msa1464630:intergenic | 35.0% | |
| ATTTCAACTGCAAAGCTTGA+AGG | + | tig0044469:6204-6223 | Msa1464630:CDS | 35.0% | |
| !! | GAAGAAAAGCTTGTTGTTAG+AGG | + | tig0044469:6305-6324 | Msa1464630:CDS | 35.0% |
| TCACACGCATACTATTTAGA+CGG | + | tig0044469:6426-6445 | Msa1464630:CDS | 35.0% | |
| ! | GTTTGTATCGATGAAGACGA+CGG | - | tig0044469:2779-2798 | Msa1464630:intergenic | 40.0% |
| TACAAACCTCGATACTCACT+TGG | + | tig0044469:2792-2811 | Msa1464630:CDS | 40.0% | |
| !!! | ATTACTTTTGAGGTCGGAGA+CGG | - | tig0044469:2842-2861 | Msa1464630:intergenic | 40.0% |
| !! | AATGCTTTAGTTGGTTCTGG+TGG | + | tig0044469:3304-3323 | Msa1464630:CDS | 40.0% |
| ! | GTTCTGGTGGCGATAATAAT+GGG | + | tig0044469:3317-3336 | Msa1464630:CDS | 40.0% |
| AATTGCAACTGGGAATCACA+AGG | - | tig0044469:3352-3371 | Msa1464630:intergenic | 40.0% | |
| GCAGTATGTTCAGAAACACA+AGG | - | tig0044469:3421-3440 | Msa1464630:intergenic | 40.0% | |
| TCTGAACATACTGCTAAAGG+AGG | + | tig0044469:3427-3446 | Msa1464630:CDS | 40.0% | |
| ! | GGAGAATGGTGTCAAATTAC+TGG | + | tig0044469:3462-3481 | Msa1464630:CDS | 40.0% |
| TTGGAGTTTGAACCAAGCAA+TGG | - | tig0044469:3508-3527 | Msa1464630:intergenic | 40.0% | |
| AGAAGCTCCAAGTTTACCTA+TGG | + | tig0044469:3555-3574 | Msa1464630:CDS | 40.0% | |
| CCATCTACTTCACATTCCAT+AGG | - | tig0044469:3574-3593 | Msa1464630:intergenic | 40.0% | |
| CCTATGGAATGTGAAGTAGA+TGG | + | tig0044469:3571-3590 | Msa1464630:CDS | 40.0% | |
| ! | GAAGTAGATGGGCTTGATAA+AGG | + | tig0044469:3583-3602 | Msa1464630:CDS | 40.0% |
| ! | AGATGATGATAATGTGGGTG+TGG | + | tig0044469:3612-3631 | Msa1464630:CDS | 40.0% |
| AGAGAAAACGGAAGAGTAAG+AGG | + | tig0044469:3665-3684 | Msa1464630:CDS | 40.0% | |
| TGTTGCAGAGCAGAATGAAA+AGG | + | tig0044469:3720-3739 | Msa1464630:CDS | 40.0% | |
| TGCTGTCAAAAATTCGGAGA+TGG | + | tig0044469:3744-3763 | Msa1464630:CDS | 40.0% | |
| AAAAAAGAAGCCACTGTGGT+AGG | + | tig0044469:3895-3914 | Msa1464630:CDS | 40.0% | |
| AAAAAGAAGCCACTGTGGTA+GGG | + | tig0044469:3896-3915 | Msa1464630:CDS | 40.0% | |
| GTAGGGGATAGATCAAAAGA+AGG | + | tig0044469:3913-3932 | Msa1464630:CDS | 40.0% | |
| ACCTCAATCAAGGAACAAAC+AGG | + | tig0044469:4242-4261 | Msa1464630:CDS | 40.0% | |
| TCCTGTTTGTTCCTTGATTG+AGG | - | tig0044469:4246-4265 | Msa1464630:intergenic | 40.0% | |
| CAGTGTTACGTGAAACAAGT+GGG | - | tig0044469:4293-4312 | Msa1464630:intergenic | 40.0% | |
| TCAGTGTTACGTGAAACAAG+TGG | - | tig0044469:4294-4313 | Msa1464630:intergenic | 40.0% | |
| GTCATCCTTAGTGCCTTTAT+TGG | - | tig0044469:4382-4401 | Msa1464630:intergenic | 40.0% | |
| GGATGACTCTATTGTATGTG+AGG | + | tig0044469:4395-4414 | Msa1464630:CDS | 40.0% | |
| GACTCTATTGTATGTGAGGA+AGG | + | tig0044469:4399-4418 | Msa1464630:CDS | 40.0% | |
| !!! | TTTTTCTTTGCACTTGGTGC+GGG | - | tig0044469:4435-4454 | Msa1464630:intergenic | 40.0% |
| !! | CTTTTTCTTTGCACTTGGTG+CGG | - | tig0044469:4436-4455 | Msa1464630:intergenic | 40.0% |
| GAGGTAGATGGATCTGATAA+AGG | + | tig0044469:4711-4730 | Msa1464630:CDS | 40.0% | |
| CTGTTGTTGTACCAGTTAAG+CGG | + | tig0044469:4865-4884 | Msa1464630:CDS | 40.0% | |
| ATCTGCATTCTCTGCAAAGA+TGG | - | tig0044469:4904-4923 | Msa1464630:intergenic | 40.0% | |
| GGTTAATGCTGTGACAATGA+AGG | + | tig0044469:4995-5014 | Msa1464630:CDS | 40.0% | |
| TAATGCTGTGACAATGAAGG+AGG | + | tig0044469:4998-5017 | Msa1464630:CDS | 40.0% | |
| ! | TAGAGGAGATTTGAGTTCTG+AGG | - | tig0044469:5024-5043 | Msa1464630:intergenic | 40.0% |
| ! | GGAGATCTCTTCCTTTTCTT+AGG | - | tig0044469:5056-5075 | Msa1464630:intergenic | 40.0% |
| GATGATGTATCTCCCTTCAA+AGG | - | tig0044469:5098-5117 | Msa1464630:intergenic | 40.0% | |
| GGGAGATACATCATCTCAAA+AGG | + | tig0044469:5103-5122 | Msa1464630:CDS | 40.0% | |
| GAGGAAAGGAAAGAATCAGA+AGG | + | tig0044469:5155-5174 | Msa1464630:CDS | 40.0% | |
| TGACAAAATGGAGATTGGAG+CGG | + | tig0044469:5333-5352 | Msa1464630:CDS | 40.0% | |
| CAGTCTCCAACAAAAGAAAC+AGG | + | tig0044469:5376-5395 | Msa1464630:CDS | 40.0% | |
| GTTATCCTTCATCAGATCCT+TGG | - | tig0044469:5461-5480 | Msa1464630:intergenic | 40.0% | |
| CAGCTTCACTTTCATGACAA+TGG | - | tig0044469:5501-5520 | Msa1464630:intergenic | 40.0% | |
| CATTGTCATGAAAGTGAAGC+TGG | + | tig0044469:5499-5518 | Msa1464630:CDS | 40.0% | |
| AAGTGAAGCTGGTAAAATCG+AGG | + | tig0044469:5510-5529 | Msa1464630:CDS | 40.0% | |
| AGTGAAGCTGGTAAAATCGA+GGG | + | tig0044469:5511-5530 | Msa1464630:CDS | 40.0% | |
| !! | CTATTCACGTCGTCATTTTG+TGG | - | tig0044469:5559-5578 | Msa1464630:intergenic | 40.0% |
| TGACGACGTGAATAGAATGA+AGG | + | tig0044469:5564-5583 | Msa1464630:CDS | 40.0% | |
| !!! | TGTTCCTTTGCTGGTTTTAC+AGG | - | tig0044469:5592-5611 | Msa1464630:intergenic | 40.0% |
| AACCAGCAAAGGAACATAAG+GGG | + | tig0044469:5596-5615 | Msa1464630:CDS | 40.0% | |
| AAAGGTAAGAATAAAGGCGG+AGG | + | tig0044469:5625-5644 | Msa1464630:CDS | 40.0% | |
| ! | TAGAGCAGATAATGGTCTTG+TGG | + | tig0044469:5657-5676 | Msa1464630:CDS | 40.0% |
| AGAAACTGTTTGTGATCCTC+CGG | + | tig0044469:5720-5739 | Msa1464630:CDS | 40.0% | |
| !! | TAAGGGAAGTGATTTTAGCG+CGG | + | tig0044469:5843-5862 | Msa1464630:CDS | 40.0% |
| CATATCTGATGTGCTCTTTG+AGG | - | tig0044469:5977-5996 | Msa1464630:intergenic | 40.0% | |
| CGATGTACACAGGATTGATA+AGG | + | tig0044469:6035-6054 | Msa1464630:CDS | 40.0% | |
| ! | CAATGCTTCTGGGAAAAGTA+TGG | + | tig0044469:6152-6171 | Msa1464630:CDS | 40.0% |
| GCTTGAAGGTTCCAACAAAA+TGG | + | tig0044469:6218-6237 | Msa1464630:CDS | 40.0% | |
| ! | AGCTTCTGGAAATCATGTCA+TGG | + | tig0044469:6260-6279 | Msa1464630:CDS | 40.0% |
| ! | GTTAGAGGGAGCAATTTTCA+AGG | + | tig0044469:6320-6339 | Msa1464630:CDS | 40.0% |
| TGAAGATGAAGGTCAAGAGA+AGG | + | tig0044469:6362-6381 | Msa1464630:CDS | 40.0% | |
| TATGCGTGTGAATTGTCAGA+TGG | - | tig0044469:6417-6436 | Msa1464630:intergenic | 40.0% | |
| CACACGCATACTATTTAGAC+GGG | + | tig0044469:6427-6446 | Msa1464630:CDS | 40.0% | |
| ! | CTCAAGGGTTTATGGTTTGG+TGG | - | tig0044469:2654-2673 | None:intergenic | 45.0% |
| CTTCGTCAGGTGGAATCTAT+TGG | + | tig0044469:3271-3290 | Msa1464630:CDS | 45.0% | |
| ! | GGTTCTGGTGGCGATAATAA+TGG | + | tig0044469:3316-3335 | Msa1464630:CDS | 45.0% |
| !! | TAAAGGAGGTGTCGCGAATA+TGG | + | tig0044469:3441-3460 | Msa1464630:CDS | 45.0% |
| ACGTCTACGATCATCTGTCT+TGG | - | tig0044469:3527-3546 | Msa1464630:intergenic | 45.0% | |
| TCTTCAATGTCTGTGCAGAG+TGG | + | tig0044469:3640-3659 | Msa1464630:CDS | 45.0% | |
| CTTCAATGTCTGTGCAGAGT+GGG | + | tig0044469:3641-3660 | Msa1464630:CDS | 45.0% | |
| TGCAGAGTGGGAAGAGAAAA+CGG | + | tig0044469:3653-3672 | Msa1464630:CDS | 45.0% | |
| GAATGTGAAGTAGATGGACC+TGG | + | tig0044469:3784-3803 | Msa1464630:CDS | 45.0% | |
| ! | TCATCCTTATTTCCTCCACC+AGG | - | tig0044469:3805-3824 | Msa1464630:intergenic | 45.0% |
| !! | CTTGGCACTGATATTGAAGG+TGG | - | tig0044469:3847-3866 | Msa1464630:intergenic | 45.0% |
| !! | GCACTTGGCACTGATATTGA+AGG | - | tig0044469:3850-3869 | Msa1464630:intergenic | 45.0% |
| AAAAGAAGCCACTGTGGTAG+GGG | + | tig0044469:3897-3916 | Msa1464630:CDS | 45.0% | |
| AAACACGTGGGTGATCAGAA+GGG | - | tig0044469:3942-3961 | Msa1464630:intergenic | 45.0% | |
| GCACTTGGCACAGATATTGA+AGG | - | tig0044469:4087-4106 | Msa1464630:intergenic | 45.0% | |
| AAACTGGATGTCCTTTCGGA+TGG | - | tig0044469:4207-4226 | Msa1464630:intergenic | 45.0% | |
| AAACAAGTGGGCGGTCAAAA+GGG | - | tig0044469:4281-4300 | Msa1464630:intergenic | 45.0% | |
| TGTTACGTGAAACAAGTGGG+CGG | - | tig0044469:4290-4309 | Msa1464630:intergenic | 45.0% | |
| TCTCGACTGTCCATCTGAAA+GGG | + | tig0044469:4539-4558 | Msa1464630:CDS | 45.0% | |
| AAACTGGATGCCCTTTCAGA+TGG | - | tig0044469:4552-4571 | Msa1464630:intergenic | 45.0% | |
| GAACACATGGGCGATCAAAA+AGG | - | tig0044469:4629-4648 | Msa1464630:intergenic | 45.0% | |
| !! | ACAGCTTTTTCTGTGTGCTC+TGG | - | tig0044469:4651-4670 | Msa1464630:intergenic | 45.0% |
| AGCTGTCACACATTTGGAGA+TGG | + | tig0044469:4665-4684 | Msa1464630:CDS | 45.0% | |
| CATACTCAATGCGAGGTAGA+TGG | + | tig0044469:4699-4718 | Msa1464630:CDS | 45.0% | |
| CGGACAATATTCCGCTTAAC+TGG | - | tig0044469:4879-4898 | Msa1464630:intergenic | 45.0% | |
| CATTCTCTGCAAAGATGGCT+CGG | - | tig0044469:4899-4918 | Msa1464630:intergenic | 45.0% | |
| CGATAATAACACTGCGAACG+AGG | + | tig0044469:4974-4993 | Msa1464630:CDS | 45.0% | |
| TTGGGCTCATTCACATCTGA+AGG | - | tig0044469:5442-5461 | Msa1464630:intergenic | 45.0% | |
| TTCAGATGTGAATGAGCCCA+AGG | + | tig0044469:5441-5460 | Msa1464630:CDS | 45.0% | |
| GGAACCTGTAAAACCAGCAA+AGG | + | tig0044469:5585-5604 | Msa1464630:CDS | 45.0% | |
| ACCAGCAAAGGAACATAAGG+GGG | + | tig0044469:5597-5616 | Msa1464630:CDS | 45.0% | |
| TCAAACTGAAGAGGAAGGGA+TGG | + | tig0044469:5774-5793 | Msa1464630:CDS | 45.0% | |
| ! | GAAGGGATGGTAATGTTGCA+GGG | + | tig0044469:5787-5806 | Msa1464630:CDS | 45.0% |
| ! | AAGGGATGGTAATGTTGCAG+GGG | + | tig0044469:5788-5807 | Msa1464630:CDS | 45.0% |
| ATGTTGCAGGGGGAAATACA+AGG | + | tig0044469:5799-5818 | Msa1464630:CDS | 45.0% | |
| TGTTGCAGGGGGAAATACAA+GGG | + | tig0044469:5800-5819 | Msa1464630:CDS | 45.0% | |
| ! | TGTCGAGTCTTGTGTGCATT+TGG | - | tig0044469:6063-6082 | Msa1464630:intergenic | 45.0% |
| ! | AGCAGTTCCTCTGAAGATGA+AGG | + | tig0044469:6351-6370 | Msa1464630:CDS | 45.0% |
| CTCTTGACCTTCATCTTCAG+AGG | - | tig0044469:6361-6380 | Msa1464630:intergenic | 45.0% | |
| ! | TTTTGTCGTGAATCGACACC+TGG | - | tig0044469:6462-6481 | Msa1464630:intergenic | 45.0% |
| ! | ACGGTACCGGAGTCAGAAAT+CGG | - | tig0044469:2760-2779 | Msa1464630:intergenic | 50.0% |
| ATCGATGAAGACGACGGTAC+CGG | - | tig0044469:2773-2792 | Msa1464630:intergenic | 50.0% | |
| ! | TGAGAGCCAAGTGAGTATCG+AGG | - | tig0044469:2801-2820 | Msa1464630:intergenic | 50.0% |
| ACCTCATGGTTCACTTCGTC+AGG | + | tig0044469:3258-3277 | Msa1464630:CDS | 50.0% | |
| ACCTGACGAAGTGAACCATG+AGG | - | tig0044469:3262-3281 | Msa1464630:intergenic | 50.0% | |
| TCATGGTTCACTTCGTCAGG+TGG | + | tig0044469:3261-3280 | Msa1464630:CDS | 50.0% | |
| ! | GGTGTCGCGAATATGGAGAA+TGG | + | tig0044469:3448-3467 | Msa1464630:CDS | 50.0% |
| GATACGGCGATTCCATTGCT+TGG | + | tig0044469:3493-3512 | Msa1464630:CDS | 50.0% | |
| AACACGCAGACGATCAGAAG+GGG | - | tig0044469:3704-3723 | Msa1464630:intergenic | 50.0% | |
| CAACACGCAGACGATCAGAA+GGG | - | tig0044469:3705-3724 | Msa1464630:intergenic | 50.0% | |
| TGTGAAGTAGATGGACCTGG+TGG | + | tig0044469:3787-3806 | Msa1464630:CDS | 50.0% | |
| TGGACCTGGTGGAGGAAATA+AGG | + | tig0044469:3798-3817 | Msa1464630:CDS | 50.0% | |
| TGATCTATCCCCTACCACAG+TGG | - | tig0044469:3908-3927 | Msa1464630:intergenic | 50.0% | |
| GAAACACGTGGGTGATCAGA+AGG | - | tig0044469:3943-3962 | Msa1464630:intergenic | 50.0% | |
| !! | CAGTGTGCTCTGAAACACGT+GGG | - | tig0044469:3954-3973 | Msa1464630:intergenic | 50.0% |
| !! | TCAGTGTGCTCTGAAACACG+TGG | - | tig0044469:3955-3974 | Msa1464630:intergenic | 50.0% |
| CTTTCGGATGGACAATCGAC+AGG | - | tig0044469:4195-4214 | Msa1464630:intergenic | 50.0% | |
| ! | CTGTCGATTGTCCATCCGAA+AGG | + | tig0044469:4193-4212 | Msa1464630:CDS | 50.0% |
| GAAACAAGTGGGCGGTCAAA+AGG | - | tig0044469:4282-4301 | Msa1464630:intergenic | 50.0% | |
| CTTTCAGATGGACAGTCGAG+AGG | - | tig0044469:4540-4559 | Msa1464630:intergenic | 50.0% | |
| CTCTCGACTGTCCATCTGAA+AGG | + | tig0044469:4538-4557 | Msa1464630:CDS | 50.0% | |
| !! | CTGTGTGCTCTGGAACACAT+GGG | - | tig0044469:4641-4660 | Msa1464630:intergenic | 50.0% |
| !! | TCTGTGTGCTCTGGAACACA+TGG | - | tig0044469:4642-4661 | Msa1464630:intergenic | 50.0% |
| GATGAAGCACAAACGGCTGA+TGG | + | tig0044469:5125-5144 | Msa1464630:CDS | 50.0% | |
| TGAGCCCAAGGATCTGATGA+AGG | + | tig0044469:5453-5472 | Msa1464630:CDS | 50.0% | |
| CTGGTAAAATCGAGGGAGCT+GGG | + | tig0044469:5518-5537 | Msa1464630:CDS | 50.0% | |
| TGGTAAAATCGAGGGAGCTG+GGG | + | tig0044469:5519-5538 | Msa1464630:CDS | 50.0% | |
| ACCCCCTTATGTTCCTTTGC+TGG | - | tig0044469:5601-5620 | Msa1464630:intergenic | 50.0% | |
| ! | TGTGTTGCAGCATTTTCCGG+AGG | - | tig0044469:5739-5758 | Msa1464630:intergenic | 50.0% |
| TCCGGAAAATGCTGCAACAC+AGG | + | tig0044469:5738-5757 | Msa1464630:CDS | 50.0% | |
| ! | CCCTGTGTTGCAGCATTTTC+CGG | - | tig0044469:5742-5761 | Msa1464630:intergenic | 50.0% |
| CCGGAAAATGCTGCAACACA+GGG | + | tig0044469:5739-5758 | Msa1464630:CDS | 50.0% | |
| ! | GGAAGGGATGGTAATGTTGC+AGG | + | tig0044469:5786-5805 | Msa1464630:CDS | 50.0% |
| ! | AGGGATGGTAATGTTGCAGG+GGG | + | tig0044469:5789-5808 | Msa1464630:CDS | 50.0% |
| ! | AGAAAGAGCGCGATGTACAC+AGG | + | tig0044469:6025-6044 | Msa1464630:CDS | 50.0% |
| ! | GTCAGATGGAGTTCTAGTGC+TGG | - | tig0044469:6403-6422 | Msa1464630:intergenic | 50.0% |
| TTAGACGGGAATGACAGTCC+AGG | + | tig0044469:6441-6460 | Msa1464630:CDS | 50.0% | |
| TGCGTAAGCAGTGTGCGAGA+TGG | + | tig0044469:2729-2748 | Msa1464630:exon | 55.0% | |
| GACGGTATCGTGATCGGAGA+CGG | - | tig0044469:2824-2843 | Msa1464630:intergenic | 55.0% | |
| GTCGGAGACGGTATCGTGAT+CGG | - | tig0044469:2830-2849 | Msa1464630:intergenic | 55.0% | |
| GCAACACGCAGACGATCAGA+AGG | - | tig0044469:3706-3725 | Msa1464630:intergenic | 55.0% | |
| GAAGTAGATGGACCTGGTGG+AGG | + | tig0044469:3790-3809 | Msa1464630:CDS | 55.0% | |
| CTGATGGAGCTCACGAGGAA+AGG | + | tig0044469:5141-5160 | Msa1464630:CDS | 55.0% | |
| GCTGGTAAAATCGAGGGAGC+TGG | + | tig0044469:5517-5536 | Msa1464630:CDS | 55.0% | |
| AAAATCGAGGGAGCTGGGGA+AGG | + | tig0044469:5523-5542 | Msa1464630:CDS | 55.0% | |
| !! | CGCGGACAATGCTGATTCCT+TGG | + | tig0044469:5861-5880 | Msa1464630:CDS | 55.0% |
| GAGGACATGGCGCTGTTAGA+TGG | - | tig0044469:6105-6124 | Msa1464630:intergenic | 55.0% | |
| !! | GCGACGCCGATTTCTGACTC+CGG | + | tig0044469:2751-2770 | Msa1464630:CDS | 60.0% |
| AACGGCTGATGGAGCTCACG+AGG | + | tig0044469:5136-5155 | Msa1464630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044469 | gene | 2629 | 6482 | 2629 | ID=Msa1464630;Name=Msa1464630 |
| tig0044469 | mRNA | 2629 | 6482 | 2629 | ID=Msa1464630-mRNA-1;Parent=Msa1464630;Name=Msa1464630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119|1|0.75|1|1|1|4|0|1136 |
| tig0044469 | exon | 2629 | 2856 | 2629 | ID=Msa1464630-mRNA-1:exon:24518;Parent=Msa1464630-mRNA-1 |
| tig0044469 | exon | 2962 | 3029 | 2962 | ID=Msa1464630-mRNA-1:exon:24519;Parent=Msa1464630-mRNA-1 |
| tig0044469 | exon | 3121 | 5176 | 3121 | ID=Msa1464630-mRNA-1:exon:24520;Parent=Msa1464630-mRNA-1 |
| tig0044469 | exon | 5308 | 6482 | 5308 | ID=Msa1464630-mRNA-1:exon:24521;Parent=Msa1464630-mRNA-1 |
| tig0044469 | five_prime_UTR | 2629 | 2747 | 2629 | ID=Msa1464630-mRNA-1:five_prime_utr;Parent=Msa1464630-mRNA-1 |
| tig0044469 | CDS | 2748 | 2856 | 2748 | ID=Msa1464630-mRNA-1:cds;Parent=Msa1464630-mRNA-1 |
| tig0044469 | CDS | 2962 | 3029 | 2962 | ID=Msa1464630-mRNA-1:cds;Parent=Msa1464630-mRNA-1 |
| tig0044469 | CDS | 3121 | 5176 | 3121 | ID=Msa1464630-mRNA-1:cds;Parent=Msa1464630-mRNA-1 |
| tig0044469 | CDS | 5308 | 6482 | 5308 | ID=Msa1464630-mRNA-1:cds;Parent=Msa1464630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
