AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899350 MtrunA17_Chr6g0485241 96.809 376 6 3 1 376 1 370 0.0 726
Msa0899350 MtrunA17_Chr2g0331931 52.193 228 97 5 133 355 273 493 2.55e-58 197
Msa0899350 MtrunA17_Chr8g0344681 28.731 268 143 6 134 354 68 334 1.50e-21 94.7
Msa0899350 MtrunA17_Chr4g0041151 37.190 121 58 4 120 223 5 124 6.03e-17 80.5
Msa0899350 MtrunA17_Chr1g0179531 38.235 102 60 2 132 232 131 230 5.13e-16 79.3
Msa0899350 MtrunA17_Chr2g0283871 35.106 94 56 2 134 223 23 115 2.47e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899350 AT3G24490.1 56.522 230 92 2 133 362 89 310 2.73e-82 254
Msa0899350 AT3G58630.2 27.397 292 155 7 116 354 7 294 1.72e-27 110
Msa0899350 AT3G58630.1 27.397 292 155 7 116 354 7 294 2.08e-27 110
Msa0899350 AT3G10030.2 36.641 131 77 3 97 226 127 252 4.48e-18 86.3
Msa0899350 AT3G10030.1 36.641 131 77 3 97 226 127 252 6.13e-18 85.9
Msa0899350 AT5G05550.3 33.333 231 120 8 134 352 24 232 1.25e-17 82.0
Msa0899350 AT5G05550.1 33.333 231 120 8 134 352 24 232 1.63e-17 81.6
Msa0899350 AT3G14180.1 37.405 131 65 4 105 228 58 178 1.72e-17 84.0
Msa0899350 AT5G05550.2 33.333 231 120 8 134 352 24 232 2.12e-17 81.3
Msa0899350 AT1G54060.1 28.846 260 140 8 134 352 94 349 1.61e-16 80.9
Msa0899350 AT3G11100.1 33.333 231 125 7 134 352 22 235 2.63e-16 78.2
Msa0899350 AT3G24860.1 35.870 92 53 1 134 225 65 150 6.98e-13 69.3
Msa0899350 AT3G54390.1 23.741 278 172 8 121 370 25 290 1.54e-12 68.2
Msa0899350 AT3G54390.2 23.741 278 172 8 121 370 41 306 1.99e-12 67.8

Find 100 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTGTGGTGTTGATTC+AGG 0.144578 6_1:-94320348 Msa0899350:CDS
TCATTTGGGTTCTCTGACTA+TGG 0.163004 6_1:-94316325 Msa0899350:three_prime_UTR
GTTGCAGAAGAAGCAGATTT+TGG 0.210644 6_1:-94320037 Msa0899350:CDS
GGAGGCTTCGTATAGGATTT+TGG 0.224205 6_1:-94320169 Msa0899350:CDS
CTGAAAGAGTGCACCAGTTT+TGG 0.226370 6_1:-94316383 Msa0899350:three_prime_UTR
GGTGAGAAGTTTCTTCAAAT+TGG 0.239028 6_1:-94320606 Msa0899350:CDS
CGTTTGTGTTGTTAGAGATA+TGG 0.280545 6_1:-94320629 Msa0899350:CDS
TGGGTTTAAGTTCTTGTAAA+TGG 0.286067 6_1:-94320428 Msa0899350:CDS
ATGAAGGTTGTCAACTCATT+TGG 0.290670 6_1:-94316340 Msa0899350:three_prime_UTR
AGTGGCCCTAGTGGCGGTTT+TGG 0.306452 6_1:-94320789 Msa0899350:CDS
TCGAGTTCTGTCCATTCCTC+TGG 0.317779 6_1:-94320678 Msa0899350:CDS
TGATATTGTAAGTTACGAAT+TGG 0.332259 6_1:+94320960 None:intergenic
TAGAATGGATGAAATGGGTT+TGG 0.334179 6_1:-94320448 Msa0899350:CDS
GAAGAGTAGAATGGATGAAA+TGG 0.336184 6_1:-94320454 Msa0899350:CDS
TGCAATCTTGCCTCCAAAAC+TGG 0.346573 6_1:+94316370 None:intergenic
GTTATAATCATCGAATTCTT+CGG 0.353879 6_1:+94320896 None:intergenic
AGAATGGATGAAATGGGTTT+GGG 0.358595 6_1:-94320447 Msa0899350:CDS
TTATAATCATCGAATTCTTC+GGG 0.363359 6_1:+94320897 None:intergenic
GTGAGAAGTTTCTTCAAATT+GGG 0.369920 6_1:-94320605 Msa0899350:CDS
TGAAGGTTGTCAACTCATTT+GGG 0.376173 6_1:-94316339 Msa0899350:three_prime_UTR
ACAATTGCACAACAATTTGC+AGG 0.379950 6_1:+94316262 None:intergenic
TTTCTTGTGGTGTTGATTCA+GGG 0.398718 6_1:-94320347 Msa0899350:CDS
AACGTAGATGAAGACGGAAT+TGG 0.404212 6_1:-94320876 Msa0899350:CDS
GATGAAGACGGAATTGGAAA+TGG 0.406005 6_1:-94320870 Msa0899350:CDS
GTTTGTGTTGTTAGAGATAT+GGG 0.412812 6_1:-94320628 Msa0899350:CDS
GATATTGTAAGTTACGAATT+GGG 0.429997 6_1:+94320961 None:intergenic
ATACCAGGGTTTATTTGAAT+AGG 0.432946 6_1:-94320308 Msa0899350:CDS
AAGAGTAGAATGGATGAAAT+GGG 0.435287 6_1:-94320453 Msa0899350:CDS
CCACCACCAAAACCGCCACT+AGG 0.438484 6_1:+94320783 None:intergenic
TAAGAAAGAGAAGAGTAGAA+TGG 0.459638 6_1:-94320463 Msa0899350:CDS
TATAACTAGAAGTTTAATGC+TGG 0.461483 6_1:-94316170 Msa0899350:three_prime_UTR
TTATGAATTGTTGCCGCCAT+GGG 0.464247 6_1:-94320739 Msa0899350:CDS
CTGAGGAGTTGAAAGTTGAA+AGG 0.467561 6_1:-94320533 Msa0899350:CDS
GATTCAAGATACCCATCAAA+AGG 0.470251 6_1:-94321026 Msa0899350:CDS
GGAGTTGGAGAAGGTGAGGT+TGG 0.470646 6_1:-94320079 Msa0899350:CDS
AAGCTTATATTCAGCTGAGT+AGG 0.471698 6_1:+94316213 None:intergenic
GGCTGAAATATCGAAAATAC+AGG 0.472979 6_1:-94320004 Msa0899350:CDS
GGAATTGGAAATGGGTATGT+TGG 0.473631 6_1:-94320861 Msa0899350:CDS
CGAGTTCTGTCCATTCCTCT+GGG 0.474330 6_1:-94320677 Msa0899350:CDS
TACTAAGAGGCAACAGATGA+TGG 0.477066 6_1:-94320100 Msa0899350:CDS
ATGAAGACGGAATTGGAAAT+GGG 0.477798 6_1:-94320869 Msa0899350:CDS
TCGAGTGCGAGACAAGAGTA+TGG 0.478047 6_1:-94320372 Msa0899350:CDS
ATTCCTCTGGGTCGGAGGAA+TGG 0.482329 6_1:-94320665 Msa0899350:CDS
TTCTGTCCATTCCTCTGGGT+CGG 0.485623 6_1:-94320673 Msa0899350:CDS
GTGTAGGAGTGTATTGGATA+AGG 0.493185 6_1:-94320499 Msa0899350:CDS
AAGAGGAGGAGGCTTCGTAT+AGG 0.493270 6_1:-94320176 Msa0899350:CDS
GTGTATTGGATAAGGTGAAG+AGG 0.499755 6_1:-94320491 Msa0899350:CDS
ATTATGAATTGTTGCCGCCA+TGG 0.507987 6_1:-94320740 Msa0899350:CDS
GGATGATGTCGATAGGGAAG+AGG 0.514505 6_1:-94320193 Msa0899350:CDS
GAATGGATTTGATGAGATGA+GGG 0.516784 6_1:-94320283 Msa0899350:CDS
TTCTTGTGGTGTTGATTCAG+GGG 0.516904 6_1:-94320346 Msa0899350:CDS
GAGGCAACAGATGATGGAGT+TGG 0.516973 6_1:-94320094 Msa0899350:CDS
AGCTTATATTCAGCTGAGTA+GGG 0.521954 6_1:+94316214 None:intergenic
TGATGTCGATAGGGAAGAGG+AGG 0.521958 6_1:-94320190 Msa0899350:CDS
TGTCGATAGGGAAGAGGAGG+AGG 0.528458 6_1:-94320187 Msa0899350:CDS
CTTCAATTCAATGGACGACA+TGG 0.528859 6_1:-94321054 Msa0899350:exon
AGAAGATTGAGAATACTAAG+AGG 0.534145 6_1:-94320113 Msa0899350:CDS
CGAATGGATTTGATGAGATG+AGG 0.535045 6_1:-94320284 Msa0899350:CDS
ATAACTAGAAGTTTAATGCT+GGG 0.539651 6_1:-94316169 Msa0899350:three_prime_UTR
CACCACCAAAACCGCCACTA+GGG 0.545654 6_1:+94320784 None:intergenic
CGATGAGGATGATGTCGATA+GGG 0.548936 6_1:-94320199 Msa0899350:CDS
GGATGATGATGATGAGGATG+AGG 0.549901 6_1:-94320232 Msa0899350:CDS
AGTATGTGTTTATGAATACC+AGG 0.551827 6_1:-94320323 Msa0899350:CDS
AAGATTGCATAGAAGTATGA+AGG 0.552988 6_1:-94316356 Msa0899350:three_prime_UTR
ATTCCTCCGACCCAGAGGAA+TGG 0.555282 6_1:+94320667 None:intergenic
TTGTTGCCGCCATGGGGCAG+TGG 0.558563 6_1:-94320732 Msa0899350:CDS
AGAAGTTTCTTCAAATTGGG+AGG 0.559816 6_1:-94320602 Msa0899350:CDS
GTTTATTTGAATAGGTCGAA+TGG 0.561187 6_1:-94320300 Msa0899350:CDS
GGCACAGTGTAGGAGTGTAT+TGG 0.561474 6_1:-94320505 Msa0899350:CDS
ACAGATGATGGAGTTGGAGA+AGG 0.562220 6_1:-94320088 Msa0899350:CDS
AAAGGAATGTGGCACAGTGT+AGG 0.572005 6_1:-94320515 Msa0899350:CDS
ATTCAAGATACCCATCAAAA+GGG 0.572324 6_1:-94321025 Msa0899350:CDS
GCGATGAGGATGATGTCGAT+AGG 0.584075 6_1:-94320200 Msa0899350:CDS
CAAGAGTATGGACTTTCTTG+TGG 0.584215 6_1:-94320360 Msa0899350:CDS
GAGTCTACGTAGGCTCGAGA+AGG 0.585980 6_1:+94316558 None:intergenic
TGTCCATTCCTCTGGGTCGG+AGG 0.586004 6_1:-94320670 Msa0899350:CDS
GAGGAATAGTTTGAGATCAG+AGG 0.586253 6_1:-94320583 Msa0899350:CDS
TTCTGAGGATGATGATGATG+AGG 0.586254 6_1:-94320238 Msa0899350:CDS
TCAGAACTCTCAGACTCACC+AGG 0.597701 6_1:+94320255 None:intergenic
TGGTGAGTCTGAGAGTTCTG+AGG 0.600777 6_1:-94320253 Msa0899350:CDS
TGATGGAGTTGGAGAAGGTG+AGG 0.617953 6_1:-94320083 Msa0899350:CDS
ATAGTTTGAGATCAGAGGAA+TGG 0.618950 6_1:-94320578 Msa0899350:CDS
ATGCGAAGTGGCCCTAGTGG+CGG 0.619751 6_1:-94320795 Msa0899350:CDS
GAAAATTTACCACTGCCCCA+TGG 0.622030 6_1:+94320723 None:intergenic
AGTTGCTGAGAAAGTTTCTG+AGG 0.628405 6_1:-94320550 Msa0899350:CDS
AGTCTACGTAGGCTCGAGAA+GGG 0.633900 6_1:+94316559 None:intergenic
CGACCTATTCAAATAAACCC+TGG 0.636066 6_1:+94320305 None:intergenic
GATTATAACGTAGATGAAGA+CGG 0.641525 6_1:-94320882 Msa0899350:CDS
TATGAATTGTTGCCGCCATG+GGG 0.651070 6_1:-94320738 Msa0899350:CDS
GATGAGATGAGGGATAGTCC+TGG 0.652387 6_1:-94320273 Msa0899350:CDS
GTTGAAAGTTGAAAGGAATG+TGG 0.654797 6_1:-94320526 Msa0899350:CDS
TTTGTGTTGTTAGAGATATG+GGG 0.660660 6_1:-94320627 Msa0899350:CDS
GTATGTGTTTATGAATACCA+GGG 0.664776 6_1:-94320322 Msa0899350:CDS
AAAATGCGAAGTGGCCCTAG+TGG 0.671315 6_1:-94320798 Msa0899350:CDS
TGTCCATTCCTCCGACCCAG+AGG 0.680725 6_1:+94320662 None:intergenic
TATGAGTCGAGTCTACAGTA+CGG 0.695136 6_1:-94316583 Msa0899350:three_prime_UTR
TGATGCTGATGGTGACGATG+AGG 0.699210 6_1:-94319971 Msa0899350:CDS
GAAGCAGTAGATGATGCTGA+TGG 0.735151 6_1:-94319982 Msa0899350:CDS
AATTTACCACTGCCCCATGG+CGG 0.737952 6_1:+94320726 None:intergenic
TCAAACTTGAGAGTCTACGT+AGG 0.738284 6_1:+94316548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAATTTGAATTTTTT+TGG + chr6_1:94316204-94316223 None:intergenic 10.0%
!! AAAAAAAAAACTATTGAAAT+AGG - chr6_1:94318252-94318271 Msa0899350:intron 10.0%
!!! NNNNNNNNNATTGTTCTTTT+AGG - chr6_1:94319902-94319921 Msa0899350:intron 10.0%
!!! AACTGTTTAATTTTTTAAAA+TGG - chr6_1:94319968-94319987 Msa0899350:CDS 10.0%
!!! AATTTGAATTTTTTTGGTTA+GGG + chr6_1:94316198-94316217 None:intergenic 15.0%
!!! AAATTTGAATTTTTTTGGTT+AGG + chr6_1:94316199-94316218 None:intergenic 15.0%
!! TTTATCAATAAAACCATTAA+GGG + chr6_1:94319662-94319681 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr6_1:94320488-94320507 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr6_1:94320396-94320415 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - chr6_1:94320296-94320315 Msa0899350:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr6_1:94320488-94320507 Msa0899350:CDS 15.0%
!!! TTTTACATTTTTTCTGTTTT+AGG - chr6_1:94320881-94320900 Msa0899350:CDS 15.0%
!!! TTTTAGGTATTAAATAATCT+TGG - chr6_1:94320897-94320916 Msa0899350:CDS 15.0%
!!! TTTCGTTTTTTTTGTTTGTT+TGG + chr6_1:94316145-94316164 None:intergenic 20.0%
!! ATTGAATTGAAGAAAAATTG+GGG + chr6_1:94316256-94316275 None:intergenic 20.0%
!! CATTGAATTGAAGAAAAATT+GGG + chr6_1:94316257-94316276 None:intergenic 20.0%
!!! GAAATTTTGAAGAAAATGTT+GGG - chr6_1:94316479-94316498 Msa0899350:intron 20.0%
!! ATTGCTTATGATTTGATTAT+AGG - chr6_1:94317472-94317491 Msa0899350:intron 20.0%
!!! TTTATATTTTTATACAAGCG+AGG + chr6_1:94318005-94318024 None:intergenic 20.0%
!! CAAAAAAAAAAATCAAACTC+AGG + chr6_1:94318994-94319013 None:intergenic 20.0%
!! GTTTATCAATAAAACCATTA+AGG + chr6_1:94319663-94319682 None:intergenic 20.0%
!! AAATCAAGCTCATAAATAAA+AGG + chr6_1:94319760-94319779 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - chr6_1:94320331-94320350 Msa0899350:CDS 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr6_1:94320425-94320444 Msa0899350:CDS 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr6_1:94320426-94320445 Msa0899350:CDS 20.0%
!!! TTTTGGCAACAAATTTATTA+AGG - chr6_1:94320630-94320649 Msa0899350:CDS 20.0%
!!! TTTATTAAGGAGTTTGAAAT+TGG - chr6_1:94320643-94320662 Msa0899350:CDS 20.0%
!!! AATTTTCAATTATTTCTCTC+TGG - chr6_1:94321197-94321216 Msa0899350:five_prime_UTR 20.0%
!!! TTTGTGTTTTTGTTCAGTTT+GGG + chr6_1:94316174-94316193 None:intergenic 25.0%
!!! TTTTGTGTTTTTGTTCAGTT+TGG + chr6_1:94316175-94316194 None:intergenic 25.0%
! CCATTGAATTGAAGAAAAAT+TGG + chr6_1:94316258-94316277 None:intergenic 25.0%
!! CCAATTTTTCTTCAATTCAA+TGG - chr6_1:94316255-94316274 Msa0899350:three_prime_UTR 25.0%
! GATATTGTAAGTTACGAATT+GGG + chr6_1:94316360-94316379 None:intergenic 25.0%
! TGATATTGTAAGTTACGAAT+TGG + chr6_1:94316361-94316380 None:intergenic 25.0%
! TTATAATCATCGAATTCTTC+GGG + chr6_1:94316424-94316443 None:intergenic 25.0%
! GTTATAATCATCGAATTCTT+CGG + chr6_1:94316425-94316444 None:intergenic 25.0%
!!! GGAAATTTTGAAGAAAATGT+TGG - chr6_1:94316478-94316497 Msa0899350:intron 25.0%
!! AAATTTTCGAACTTTAATCG+TGG - chr6_1:94316610-94316629 Msa0899350:intron 25.0%
! ATATCCATCTTCTTGAAAAA+TGG + chr6_1:94316916-94316935 None:intergenic 25.0%
!! CTGATTCGATTCAAAAATTT+GGG - chr6_1:94317172-94317191 Msa0899350:intron 25.0%
! ATAATCTCAGTGAATAATGT+AGG - chr6_1:94317388-94317407 Msa0899350:intron 25.0%
! ATTGTAGCACTAAACAAATT+TGG + chr6_1:94317516-94317535 None:intergenic 25.0%
!!! GTTTTTTTTTGTGTTTTGAC+CGG - chr6_1:94317723-94317742 Msa0899350:intron 25.0%
! ATAAGATTAATTCCCAATGA+AGG - chr6_1:94317746-94317765 Msa0899350:intron 25.0%
! TAAGATTAATTCCCAATGAA+GGG - chr6_1:94317747-94317766 Msa0899350:intron 25.0%
!! TTTTTCTGACTAAATGTGAA+TGG - chr6_1:94318177-94318196 Msa0899350:intron 25.0%
! TTTCTTAAACAAAACAACTG+AGG + chr6_1:94318664-94318683 None:intergenic 25.0%
! CATTCTTTACACAAATTGAT+TGG - chr6_1:94318712-94318731 Msa0899350:intron 25.0%
! CTGTATTTGTAATTGTATCA+TGG - chr6_1:94318833-94318852 Msa0899350:intron 25.0%
! TACAAAATTGCTTTCTAATG+TGG - chr6_1:94318931-94318950 Msa0899350:intron 25.0%
! ACAAAATTGCTTTCTAATGT+GGG - chr6_1:94318932-94318951 Msa0899350:intron 25.0%
! AAAATATTGCTTCCTAAGTT+AGG - chr6_1:94319406-94319425 Msa0899350:intron 25.0%
! AAATATTGCTTCCTAAGTTA+GGG - chr6_1:94319407-94319426 Msa0899350:intron 25.0%
!! TAATGGATATGAAGTAATCA+AGG + chr6_1:94319506-94319525 None:intergenic 25.0%
! ATTAGATGTTGCAAATTCAT+GGG - chr6_1:94319522-94319541 Msa0899350:intron 25.0%
!! TTAAGCAACAACAAATTTTC+AGG - chr6_1:94319778-94319797 Msa0899350:intron 25.0%
! CTATACTACATAAGCAAAAA+AGG + chr6_1:94319995-94320014 None:intergenic 25.0%
! CTTATGTAGTATAGAAAGAA+GGG - chr6_1:94320001-94320020 Msa0899350:CDS 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr6_1:94320136-94320155 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr6_1:94320137-94320156 None:intergenic 25.0%
! AGGGCAAAAAAACAAAATTA+GGG - chr6_1:94320459-94320478 Msa0899350:CDS 25.0%
! AGTAGCAAAATGTAAAGATA+GGG + chr6_1:94320581-94320600 None:intergenic 25.0%
!!! TGACGAAGTTTTTTGTTTTT+TGG - chr6_1:94320613-94320632 Msa0899350:CDS 25.0%
!!! TCTATATATGTGTCATTTAC+AGG - chr6_1:94320696-94320715 Msa0899350:CDS 25.0%
!!! CTATATATGTGTCATTTACA+GGG - chr6_1:94320697-94320716 Msa0899350:CDS 25.0%
!!! TATATATGTGTCATTTACAG+GGG - chr6_1:94320698-94320717 Msa0899350:CDS 25.0%
! TATAACTAGAAGTTTAATGC+TGG - chr6_1:94321148-94321167 Msa0899350:five_prime_UTR 25.0%
! ATAACTAGAAGTTTAATGCT+GGG - chr6_1:94321149-94321168 Msa0899350:five_prime_UTR 25.0%
!! TTGTGTTTTTGTTCAGTTTG+GGG + chr6_1:94316173-94316192 None:intergenic 30.0%
ATTCAAGATACCCATCAAAA+GGG - chr6_1:94316293-94316312 Msa0899350:three_prime_UTR 30.0%
GATTATAACGTAGATGAAGA+CGG - chr6_1:94316436-94316455 Msa0899350:intron 30.0%
AAAAAGAGAAAAATGCGAAG+TGG - chr6_1:94316511-94316530 Msa0899350:intron 30.0%
! GTTTGTGTTGTTAGAGATAT+GGG - chr6_1:94316690-94316709 Msa0899350:intron 30.0%
! TTTGTGTTGTTAGAGATATG+GGG - chr6_1:94316691-94316710 Msa0899350:intron 30.0%
GTGAGAAGTTTCTTCAAATT+GGG - chr6_1:94316713-94316732 Msa0899350:intron 30.0%
TAAGAAAGAGAAGAGTAGAA+TGG - chr6_1:94316855-94316874 Msa0899350:intron 30.0%
AAGAGTAGAATGGATGAAAT+GGG - chr6_1:94316865-94316884 Msa0899350:intron 30.0%
! TGGGTTTAAGTTCTTGTAAA+TGG - chr6_1:94316890-94316909 Msa0899350:intron 30.0%
AGTATGTGTTTATGAATACC+AGG - chr6_1:94316995-94317014 Msa0899350:intron 30.0%
GTATGTGTTTATGAATACCA+GGG - chr6_1:94316996-94317015 Msa0899350:intron 30.0%
ATACCAGGGTTTATTTGAAT+AGG - chr6_1:94317010-94317029 Msa0899350:intron 30.0%
GTTTATTTGAATAGGTCGAA+TGG - chr6_1:94317018-94317037 Msa0899350:intron 30.0%
!! GCTGATTCGATTCAAAAATT+TGG - chr6_1:94317171-94317190 Msa0899350:intron 30.0%
AGAAGATTGAGAATACTAAG+AGG - chr6_1:94317205-94317224 Msa0899350:intron 30.0%
!! GTTGGATTTTAATAGGGAAT+TGG - chr6_1:94317257-94317276 Msa0899350:intron 30.0%
CATTGGGAATTAATCTTATC+CGG + chr6_1:94317745-94317764 None:intergenic 30.0%
! ATCACTTGGTGAAATGAATT+TGG - chr6_1:94317976-94317995 Msa0899350:intron 30.0%
AATGTGAATGGAAGAACATT+AGG - chr6_1:94318189-94318208 Msa0899350:intron 30.0%
TGATGTCAAATAACCTTGAA+TGG - chr6_1:94318457-94318476 Msa0899350:intron 30.0%
GATGTCAAATAACCTTGAAT+GGG - chr6_1:94318458-94318477 Msa0899350:intron 30.0%
AAAATAACATGACCCATTCA+AGG + chr6_1:94318473-94318492 None:intergenic 30.0%
! CTTAGTCTCTATACATGTTT+TGG + chr6_1:94318501-94318520 None:intergenic 30.0%
GAAAAGTGAAACACAAGAAA+TGG - chr6_1:94318595-94318614 Msa0899350:intron 30.0%
AAATGTCGCTAATGCATAAA+AGG + chr6_1:94318738-94318757 None:intergenic 30.0%
! TTTTATGCATTAGCGACATT+TGG - chr6_1:94318737-94318756 Msa0899350:intron 30.0%
!!! TTTGGTTTTTATGCTTTCAC+TGG - chr6_1:94318755-94318774 Msa0899350:intron 30.0%
! TATGTGAGTAAACTCGTTTT+GGG + chr6_1:94318913-94318932 None:intergenic 30.0%
TCACCAATTCTTGAATTCTA+AGG - chr6_1:94319044-94319063 Msa0899350:intron 30.0%
CACCAATTCTTGAATTCTAA+GGG - chr6_1:94319045-94319064 Msa0899350:intron 30.0%
AACCCTTAGAATTCAAGAAT+TGG + chr6_1:94319050-94319069 None:intergenic 30.0%
CAAACCAGACAAAAACAAAA+CGG + chr6_1:94319240-94319259 None:intergenic 30.0%
!!! TCATTTTTTCATGCTCTGTT+TGG - chr6_1:94319332-94319351 Msa0899350:intron 30.0%
! GACTTGAATTTTTGAATCAC+CGG + chr6_1:94319484-94319503 None:intergenic 30.0%
CATGAATTTGCAACATCTAA+TGG + chr6_1:94319523-94319542 None:intergenic 30.0%
CATTAGATGTTGCAAATTCA+TGG - chr6_1:94319521-94319540 Msa0899350:intron 30.0%
! TTAAGCTCAATTGATTTCCA+TGG - chr6_1:94319616-94319635 Msa0899350:intron 30.0%
TGAAATTGTTGGAATTTGCA+TGG + chr6_1:94319705-94319724 None:intergenic 30.0%
GCAAATTCCAACAATTTCAT+TGG - chr6_1:94319706-94319725 Msa0899350:intron 30.0%
GCTTATGTAGTATAGAAAGA+AGG - chr6_1:94320000-94320019 Msa0899350:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr6_1:94320519-94320538 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr6_1:94320518-94320537 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr6_1:94320503-94320522 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr6_1:94320199-94320218 Msa0899350:CDS 30.0%
CAGGGCAAAAAAACAAAATT+AGG - chr6_1:94320458-94320477 Msa0899350:CDS 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr6_1:94320503-94320522 Msa0899350:CDS 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr6_1:94320518-94320537 Msa0899350:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr6_1:94320519-94320538 Msa0899350:CDS 30.0%
! TCTAGGGTTAATTATGTTTC+TGG + chr6_1:94320546-94320565 None:intergenic 30.0%
ATTAACCCTAGAAAGAAACT+AGG - chr6_1:94320554-94320573 Msa0899350:CDS 30.0%
CAGTAGCAAAATGTAAAGAT+AGG + chr6_1:94320582-94320601 None:intergenic 30.0%
! AAGATTGCATAGAAGTATGA+AGG - chr6_1:94320962-94320981 Msa0899350:CDS 30.0%
GATTCAAGATACCCATCAAA+AGG - chr6_1:94316292-94316311 Msa0899350:three_prime_UTR 35.0%
!! GGTGTTTTTGACGAAGATTA+GGG + chr6_1:94316339-94316358 None:intergenic 35.0%
ATGAAGACGGAATTGGAAAT+GGG - chr6_1:94316449-94316468 Msa0899350:intron 35.0%
! TTTTCGAACTTTAATCGTGG+TGG - chr6_1:94316613-94316632 Msa0899350:intron 35.0%
! CGTTTGTGTTGTTAGAGATA+TGG - chr6_1:94316689-94316708 Msa0899350:intron 35.0%
GGTGAGAAGTTTCTTCAAAT+TGG - chr6_1:94316712-94316731 Msa0899350:intron 35.0%
AGAAGTTTCTTCAAATTGGG+AGG - chr6_1:94316716-94316735 Msa0899350:intron 35.0%
! ATAGTTTGAGATCAGAGGAA+TGG - chr6_1:94316740-94316759 Msa0899350:intron 35.0%
GTTGAAAGTTGAAAGGAATG+TGG - chr6_1:94316792-94316811 Msa0899350:intron 35.0%
GAAGAGTAGAATGGATGAAA+TGG - chr6_1:94316864-94316883 Msa0899350:intron 35.0%
! TAGAATGGATGAAATGGGTT+TGG - chr6_1:94316870-94316889 Msa0899350:intron 35.0%
! AGAATGGATGAAATGGGTTT+GGG - chr6_1:94316871-94316890 Msa0899350:intron 35.0%
!!! ATGGCCATTTTTCAAGAAGA+TGG - chr6_1:94316909-94316928 Msa0899350:intron 35.0%
!! TTTCTTGTGGTGTTGATTCA+GGG - chr6_1:94316971-94316990 Msa0899350:intron 35.0%
! GAATGGATTTGATGAGATGA+GGG - chr6_1:94317035-94317054 Msa0899350:intron 35.0%
!! AGGTGAGGTTGGATTTTAAT+AGG - chr6_1:94317250-94317269 Msa0899350:intron 35.0%
!! GGTGAGGTTGGATTTTAATA+GGG - chr6_1:94317251-94317270 Msa0899350:intron 35.0%
! AGAAGAAGCAGATTTTGGAT+AGG - chr6_1:94317286-94317305 Msa0899350:intron 35.0%
! GAAGAAGCAGATTTTGGATA+GGG - chr6_1:94317287-94317306 Msa0899350:intron 35.0%
GGCTGAAATATCGAAAATAC+AGG - chr6_1:94317314-94317333 Msa0899350:intron 35.0%
TCTCAGTGAATAATGTAGGT+AGG - chr6_1:94317392-94317411 Msa0899350:intron 35.0%
TTTCTGGATGAATAGCTTCT+TGG - chr6_1:94317654-94317673 Msa0899350:intron 35.0%
TTCTGGATGAATAGCTTCTT+GGG - chr6_1:94317655-94317674 Msa0899350:intron 35.0%
CCTATAATCAACCCTTCATT+GGG + chr6_1:94317761-94317780 None:intergenic 35.0%
TCCTATAATCAACCCTTCAT+TGG + chr6_1:94317762-94317781 None:intergenic 35.0%
ATCAAATCACATTCAAGCCA+AGG + chr6_1:94317819-94317838 None:intergenic 35.0%
! GTTTCCTAATCGACTTATCT+TGG - chr6_1:94317923-94317942 Msa0899350:intron 35.0%
CTAACCAAGATAAGTCGATT+AGG + chr6_1:94317930-94317949 None:intergenic 35.0%
ACAACCTTACTATTACACAG+AGG - chr6_1:94318377-94318396 Msa0899350:intron 35.0%
GTTACAACACTTCCTTTAGA+GGG + chr6_1:94318407-94318426 None:intergenic 35.0%
TGTTACAACACTTCCTTTAG+AGG + chr6_1:94318408-94318427 None:intergenic 35.0%
AGTGTTGTAACATTGTGAGA+TGG - chr6_1:94318416-94318435 Msa0899350:intron 35.0%
!! AGTCTCTATACATGTTTTGG+AGG + chr6_1:94318498-94318517 None:intergenic 35.0%
TAAGACGAGTAAGAAGGTTA+AGG + chr6_1:94318641-94318660 None:intergenic 35.0%
! GTATGTGAGTAAACTCGTTT+TGG + chr6_1:94318914-94318933 None:intergenic 35.0%
! GTGAATCCTTTTATCTTCTC+TGG - chr6_1:94319070-94319089 Msa0899350:intron 35.0%
AAGAGACCAGAGAAGATAAA+AGG + chr6_1:94319079-94319098 None:intergenic 35.0%
CAACATACAGTTCAACTTGT+CGG + chr6_1:94319160-94319179 None:intergenic 35.0%
AAGAGAGCAAAACAGAAAAG+AGG + chr6_1:94319289-94319308 None:intergenic 35.0%
!! TTTGGCTCTTTGTTTCATTC+TGG - chr6_1:94319350-94319369 Msa0899350:intron 35.0%
TCTGATGTATGCACCTATAT+TGG - chr6_1:94319550-94319569 Msa0899350:intron 35.0%
CTCACAGTAGAATCCAATAT+AGG + chr6_1:94319566-94319585 None:intergenic 35.0%
GATTGTGCCAATGAAATTGT+TGG + chr6_1:94319716-94319735 None:intergenic 35.0%
!!! TTTGCGATAATTTTTTGCGG+AGG - chr6_1:94320334-94320353 Msa0899350:CDS 35.0%
! TACTTTTCACCATCTGAACT+TGG + chr6_1:94320826-94320845 None:intergenic 35.0%
ATGAAGGTTGTCAACTCATT+TGG - chr6_1:94320978-94320997 Msa0899350:CDS 35.0%
TGAAGGTTGTCAACTCATTT+GGG - chr6_1:94320979-94320998 Msa0899350:CDS 35.0%
ACAATTGCACAACAATTTGC+AGG + chr6_1:94321059-94321078 None:intergenic 35.0%
AGCTTATATTCAGCTGAGTA+GGG + chr6_1:94321107-94321126 None:intergenic 35.0%
AAGCTTATATTCAGCTGAGT+AGG + chr6_1:94321108-94321127 None:intergenic 35.0%
CTTCAATTCAATGGACGACA+TGG - chr6_1:94316264-94316283 Msa0899350:three_prime_UTR 40.0%
!!! GTAAAGGGTACCCTTTTGAT+GGG + chr6_1:94316306-94316325 None:intergenic 40.0%
! TAGGGTTTTTGCGTCGTAAA+GGG + chr6_1:94316321-94316340 None:intergenic 40.0%
! TTAGGGTTTTTGCGTCGTAA+AGG + chr6_1:94316322-94316341 None:intergenic 40.0%
!! GGGTGTTTTTGACGAAGATT+AGG + chr6_1:94316340-94316359 None:intergenic 40.0%
AACGTAGATGAAGACGGAAT+TGG - chr6_1:94316442-94316461 Msa0899350:intron 40.0%
GATGAAGACGGAATTGGAAA+TGG - chr6_1:94316448-94316467 Msa0899350:intron 40.0%
GGAATTGGAAATGGGTATGT+TGG - chr6_1:94316457-94316476 Msa0899350:intron 40.0%
ATTATGAATTGTTGCCGCCA+TGG - chr6_1:94316578-94316597 Msa0899350:three_prime_UTR 40.0%
TTATGAATTGTTGCCGCCAT+GGG - chr6_1:94316579-94316598 Msa0899350:three_prime_UTR 40.0%
! GAGGAATAGTTTGAGATCAG+AGG - chr6_1:94316735-94316754 Msa0899350:intron 40.0%
AGTTGCTGAGAAAGTTTCTG+AGG - chr6_1:94316768-94316787 Msa0899350:intron 40.0%
CTGAGGAGTTGAAAGTTGAA+AGG - chr6_1:94316785-94316804 Msa0899350:intron 40.0%
! GTGTAGGAGTGTATTGGATA+AGG - chr6_1:94316819-94316838 Msa0899350:intron 40.0%
GTGTATTGGATAAGGTGAAG+AGG - chr6_1:94316827-94316846 Msa0899350:intron 40.0%
! CAAGAGTATGGACTTTCTTG+TGG - chr6_1:94316958-94316977 Msa0899350:intron 40.0%
!! CTTTCTTGTGGTGTTGATTC+AGG - chr6_1:94316970-94316989 Msa0899350:intron 40.0%
!! TTCTTGTGGTGTTGATTCAG+GGG - chr6_1:94316972-94316991 Msa0899350:intron 40.0%
CGACCTATTCAAATAAACCC+TGG + chr6_1:94317016-94317035 None:intergenic 40.0%
! CGAATGGATTTGATGAGATG+AGG - chr6_1:94317034-94317053 Msa0899350:intron 40.0%
! TTCTGAGGATGATGATGATG+AGG - chr6_1:94317080-94317099 Msa0899350:intron 40.0%
! GATGAGGATGAGGATTTTGA+TGG - chr6_1:94317096-94317115 Msa0899350:intron 40.0%
TACTAAGAGGCAACAGATGA+TGG - chr6_1:94317218-94317237 Msa0899350:intron 40.0%
! GTTGCAGAAGAAGCAGATTT+TGG - chr6_1:94317281-94317300 Msa0899350:intron 40.0%
ATGTAGGTAGGTGTGTATGT+TGG - chr6_1:94317404-94317423 Msa0899350:intron 40.0%
ACCACACATGTGAGTATTTC+TGG - chr6_1:94317638-94317657 Msa0899350:intron 40.0%
TCCAGAAATACTCACATGTG+TGG + chr6_1:94317642-94317661 None:intergenic 40.0%
TAGCTTCTTGGGACTTATCT+TGG - chr6_1:94317666-94317685 Msa0899350:intron 40.0%
! CCCAATGAAGGGTTGATTAT+AGG - chr6_1:94317758-94317777 Msa0899350:intron 40.0%
! GAGTTTGATTTAAGCTGCCT+TGG - chr6_1:94317799-94317818 Msa0899350:intron 40.0%
AAAGCGTGGACAAGATAAAG+AGG + chr6_1:94317883-94317902 None:intergenic 40.0%
TCCACGCTTTCCTTATCAAT+GGG - chr6_1:94317893-94317912 Msa0899350:intron 40.0%
TTCCTTATCAATGGGGTAGA+TGG - chr6_1:94317901-94317920 Msa0899350:intron 40.0%
AACCATCTACCCCATTGATA+AGG + chr6_1:94317906-94317925 None:intergenic 40.0%
ACACGAATTGTCAGATCACT+TGG - chr6_1:94317962-94317981 Msa0899350:intron 40.0%
TTGAGTGTAGTACAGACTCA+AGG - chr6_1:94318048-94318067 Msa0899350:intron 40.0%
! TCGACTTTTCATGCTTATCC+CGG - chr6_1:94318084-94318103 Msa0899350:intron 40.0%
! TTTTGACCTAGAGATCACAC+AGG + chr6_1:94318353-94318372 None:intergenic 40.0%
TGTGTGATCTCTAGGTCAAA+AGG - chr6_1:94318352-94318371 Msa0899350:intron 40.0%
AGAGCCTCTGTGTAATAGTA+AGG + chr6_1:94318384-94318403 None:intergenic 40.0%
GACTATCTATCACTAGAAGC+TGG - chr6_1:94318526-94318545 Msa0899350:intron 40.0%
! ACTCTTCCTTCTTTTCATCC+CGG - chr6_1:94318782-94318801 Msa0899350:intron 40.0%
TTACTCGTGAACTGCAATTC+CGG + chr6_1:94318804-94318823 None:intergenic 40.0%
TGCGAGTCAACTTATAGACT+CGG - chr6_1:94318866-94318885 Msa0899350:intron 40.0%
ACAAAAACAAAACGGAGACG+AGG + chr6_1:94319232-94319251 None:intergenic 40.0%
!!! GTCTCCGTTTTGTTTTTGTC+TGG - chr6_1:94319233-94319252 Msa0899350:intron 40.0%
! GCTCTTTGTTTCATTCTGGT+TGG - chr6_1:94319354-94319373 Msa0899350:intron 40.0%
TATTGCTTCCTAAGTTAGGG+TGG - chr6_1:94319410-94319429 Msa0899350:intron 40.0%
GATACACTACAGCAAGTCTT+TGG + chr6_1:94319462-94319481 None:intergenic 40.0%
!! AAGACTTGCTGTAGTGTATC+CGG - chr6_1:94319462-94319481 Msa0899350:intron 40.0%
GATGTTGCAAATTCATGGGT+AGG - chr6_1:94319526-94319545 Msa0899350:intron 40.0%
ATAGCAGAGTTGTTATCTGG+AGG + chr6_1:94319592-94319611 None:intergenic 40.0%
GCAATAGCAGAGTTGTTATC+TGG + chr6_1:94319595-94319614 None:intergenic 40.0%
GCATGGAAAAGAGCAATATC+AGG + chr6_1:94319688-94319707 None:intergenic 40.0%
TTGAGTAGGGACTAATACTC+AGG - chr6_1:94320439-94320458 Msa0899350:CDS 40.0%
TGAGTAGGGACTAATACTCA+GGG - chr6_1:94320440-94320459 Msa0899350:CDS 40.0%
AGGGTCCTAGTTTCTTTCTA+GGG + chr6_1:94320562-94320581 None:intergenic 40.0%
TAGGGTCCTAGTTTCTTTCT+AGG + chr6_1:94320563-94320582 None:intergenic 40.0%
TATGAGTCGAGTCTACAGTA+CGG - chr6_1:94320735-94320754 Msa0899350:CDS 40.0%
TCAAACTTGAGAGTCTACGT+AGG + chr6_1:94320773-94320792 None:intergenic 40.0%
TTTCTACTGCCAAGTTCAGA+TGG - chr6_1:94320814-94320833 Msa0899350:CDS 40.0%
! TCATTTGGGTTCTCTGACTA+TGG - chr6_1:94320993-94321012 Msa0899350:CDS 40.0%
!!! CGTAAAGGGTACCCTTTTGA+TGG + chr6_1:94316307-94316326 None:intergenic 45.0%
TATGAATTGTTGCCGCCATG+GGG - chr6_1:94316580-94316599 Msa0899350:three_prime_UTR 45.0%
GAAAATTTACCACTGCCCCA+TGG + chr6_1:94316598-94316617 None:intergenic 45.0%
AAAGGAATGTGGCACAGTGT+AGG - chr6_1:94316803-94316822 Msa0899350:intron 45.0%
! GGATGATGATGATGAGGATG+AGG - chr6_1:94317086-94317105 Msa0899350:intron 45.0%
!!! TGAGGATTTTGATGGCGATG+AGG - chr6_1:94317104-94317123 Msa0899350:intron 45.0%
CGATGAGGATGATGTCGATA+GGG - chr6_1:94317119-94317138 Msa0899350:intron 45.0%
! GGAGGCTTCGTATAGGATTT+TGG - chr6_1:94317149-94317168 Msa0899350:intron 45.0%
!! ACAGATGATGGAGTTGGAGA+AGG - chr6_1:94317230-94317249 Msa0899350:intron 45.0%
GAAGCAGTAGATGATGCTGA+TGG - chr6_1:94317336-94317355 Msa0899350:intron 45.0%
GTCCACGCTTTCCTTATCAA+TGG - chr6_1:94317892-94317911 Msa0899350:intron 45.0%
CCACGCTTTCCTTATCAATG+GGG - chr6_1:94317894-94317913 Msa0899350:intron 45.0%
TTCATGCTTATCCCGGTATC+TGG - chr6_1:94318091-94318110 Msa0899350:intron 45.0%
TCCTGCTTCAATCCAGATAC+CGG + chr6_1:94318106-94318125 None:intergenic 45.0%
ACTATTGAAATAGGCGACCC+TGG - chr6_1:94318261-94318280 Msa0899350:intron 45.0%
TAGGTTCCTGTGTGATCTCT+AGG - chr6_1:94318344-94318363 Msa0899350:intron 45.0%
CTGAGGTAAGACGAGTAAGA+AGG + chr6_1:94318647-94318666 None:intergenic 45.0%
GCAATTCCGGGATGAAAAGA+AGG + chr6_1:94318791-94318810 None:intergenic 45.0%
TACTCGTGAACTGCAATTCC+GGG + chr6_1:94318803-94318822 None:intergenic 45.0%
GGTAGCTGGACTTGTAAACT+TGG + chr6_1:94318892-94318911 None:intergenic 45.0%
!! GTAAACTCGTTTTGGGTAGC+TGG + chr6_1:94318906-94318925 None:intergenic 45.0%
CTTTCTAATGTGGGCAGACT+CGG - chr6_1:94318941-94318960 Msa0899350:intron 45.0%
TTTCTAATGTGGGCAGACTC+GGG - chr6_1:94318942-94318961 Msa0899350:intron 45.0%
CAGTAACAGCGTCACAAAGA+TGG + chr6_1:94319114-94319133 None:intergenic 45.0%
CTGCACTTAGTTGGAAACCA+TGG + chr6_1:94319636-94319655 None:intergenic 45.0%
CATGGTTTCCAACTAAGTGC+AGG - chr6_1:94319634-94319653 Msa0899350:intron 45.0%
TAAGGGTTCCTGCACTTAGT+TGG + chr6_1:94319645-94319664 None:intergenic 45.0%
CTAAGTGCAGGAACCCTTAA+TGG - chr6_1:94319646-94319665 Msa0899350:intron 45.0%
!! CTGAAAGAGTGCACCAGTTT+TGG - chr6_1:94320935-94320954 Msa0899350:CDS 45.0%
!! AAAGAGTGCACCAGTTTTGG+AGG - chr6_1:94320938-94320957 Msa0899350:CDS 45.0%
TGCAATCTTGCCTCCAAAAC+TGG + chr6_1:94320951-94320970 None:intergenic 45.0%
!!! ATAAGTAATTTTTTTTTATA+GGG + chr6_1:94320104-94320123 None:intergenic 5.0%
!!! TATAAGTAATTTTTTTTTAT+AGG + chr6_1:94320105-94320124 None:intergenic 5.0%
AAAATGCGAAGTGGCCCTAG+TGG - chr6_1:94316520-94316539 Msa0899350:intron 50.0%
AATTTACCACTGCCCCATGG+CGG + chr6_1:94316595-94316614 None:intergenic 50.0%
TCGAGTTCTGTCCATTCCTC+TGG - chr6_1:94316640-94316659 Msa0899350:intron 50.0%
CGAGTTCTGTCCATTCCTCT+GGG - chr6_1:94316641-94316660 Msa0899350:intron 50.0%
TTCTGTCCATTCCTCTGGGT+CGG - chr6_1:94316645-94316664 Msa0899350:intron 50.0%
! GGCACAGTGTAGGAGTGTAT+TGG - chr6_1:94316813-94316832 Msa0899350:intron 50.0%
TCGAGTGCGAGACAAGAGTA+TGG - chr6_1:94316946-94316965 Msa0899350:intron 50.0%
GATGAGATGAGGGATAGTCC+TGG - chr6_1:94317045-94317064 Msa0899350:intron 50.0%
TCAGAACTCTCAGACTCACC+AGG + chr6_1:94317066-94317085 None:intergenic 50.0%
TGGTGAGTCTGAGAGTTCTG+AGG - chr6_1:94317065-94317084 Msa0899350:intron 50.0%
GCGATGAGGATGATGTCGAT+AGG - chr6_1:94317118-94317137 Msa0899350:intron 50.0%
GGATGATGTCGATAGGGAAG+AGG - chr6_1:94317125-94317144 Msa0899350:intron 50.0%
TGATGTCGATAGGGAAGAGG+AGG - chr6_1:94317128-94317147 Msa0899350:intron 50.0%
AAGAGGAGGAGGCTTCGTAT+AGG - chr6_1:94317142-94317161 Msa0899350:intron 50.0%
!! GAGGCAACAGATGATGGAGT+TGG - chr6_1:94317224-94317243 Msa0899350:intron 50.0%
TGATGGAGTTGGAGAAGGTG+AGG - chr6_1:94317235-94317254 Msa0899350:intron 50.0%
! GCAGATTTTGGATAGGGCTC+AGG - chr6_1:94317293-94317312 Msa0899350:intron 50.0%
! TGATGCTGATGGTGACGATG+AGG - chr6_1:94317347-94317366 Msa0899350:intron 50.0%
CCCCATTGATAAGGAAAGCG+TGG + chr6_1:94317897-94317916 None:intergenic 50.0%
CCTGCTTCAATCCAGATACC+GGG + chr6_1:94318105-94318124 None:intergenic 50.0%
ATTGAAATAGGCGACCCTGG+TGG - chr6_1:94318264-94318283 Msa0899350:intron 50.0%
TTGAAATAGGCGACCCTGGT+GGG - chr6_1:94318265-94318284 Msa0899350:intron 50.0%
TCTAGAGACCAGGGTCTAGA+GGG - chr6_1:94318289-94318308 Msa0899350:intron 50.0%
!! GGGGAGGCTGTTTCTTAGAT+AGG - chr6_1:94318325-94318344 Msa0899350:intron 50.0%
GTGATGCAGCACTGCATTTC+GGG + chr6_1:94319028-94319047 None:intergenic 50.0%
GGTGATGCAGCACTGCATTT+CGG + chr6_1:94319029-94319048 None:intergenic 50.0%
AACTTGTCGGAGACTAACGC+TGG + chr6_1:94319147-94319166 None:intergenic 50.0%
TCCTAAGTTAGGGTGGCTAG+TGG - chr6_1:94319417-94319436 Msa0899350:intron 50.0%
TCCACTAGCCACCCTAACTT+AGG + chr6_1:94319421-94319440 None:intergenic 50.0%
AGGGTGGCTAGTGGAATCTT+TGG - chr6_1:94319426-94319445 Msa0899350:intron 50.0%
AGTCTACGTAGGCTCGAGAA+GGG + chr6_1:94320762-94320781 None:intergenic 50.0%
CACCACCAAAACCGCCACTA+GGG + chr6_1:94316537-94316556 None:intergenic 55.0%
ATTCCTCCGACCCAGAGGAA+TGG + chr6_1:94316654-94316673 None:intergenic 55.0%
ATTCCTCTGGGTCGGAGGAA+TGG - chr6_1:94316653-94316672 Msa0899350:intron 55.0%
TGTCGATAGGGAAGAGGAGG+AGG - chr6_1:94317131-94317150 Msa0899350:intron 55.0%
GGAGTTGGAGAAGGTGAGGT+TGG - chr6_1:94317239-94317258 Msa0899350:intron 55.0%
CCCGGTATCTGGATTGAAGC+AGG - chr6_1:94318102-94318121 Msa0899350:intron 55.0%
TGAAATAGGCGACCCTGGTG+GGG - chr6_1:94318266-94318285 Msa0899350:intron 55.0%
GTCTAGAGACCAGGGTCTAG+AGG - chr6_1:94318288-94318307 Msa0899350:intron 55.0%
TAGAGGGTAGCCTCGGAAGT+GGG - chr6_1:94318305-94318324 Msa0899350:intron 55.0%
CACAGAGGCTCTCCCTCTAA+AGG - chr6_1:94318392-94318411 Msa0899350:intron 55.0%
GAGTCTACGTAGGCTCGAGA+AGG + chr6_1:94320763-94320782 None:intergenic 55.0%
ATGCGAAGTGGCCCTAGTGG+CGG - chr6_1:94316523-94316542 Msa0899350:intron 60.0%
! AGTGGCCCTAGTGGCGGTTT+TGG - chr6_1:94316529-94316548 Msa0899350:intron 60.0%
CCACCACCAAAACCGCCACT+AGG + chr6_1:94316538-94316557 None:intergenic 60.0%
!! CCTAGTGGCGGTTTTGGTGG+TGG - chr6_1:94316535-94316554 Msa0899350:three_prime_UTR 60.0%
!!! AGTGGCGGTTTTGGTGGTGG+TGG - chr6_1:94316538-94316557 Msa0899350:three_prime_UTR 60.0%
!!! GGTTTTGGTGGTGGTGGTGG+TGG - chr6_1:94316544-94316563 Msa0899350:three_prime_UTR 60.0%
TGTCCATTCCTCTGGGTCGG+AGG - chr6_1:94316648-94316667 Msa0899350:intron 60.0%
TGTCCATTCCTCCGACCCAG+AGG + chr6_1:94316659-94316678 None:intergenic 60.0%
CTGGTCTCTAGACCCCACCA+GGG + chr6_1:94318281-94318300 None:intergenic 60.0%
CTGGTGGGGTCTAGAGACCA+GGG - chr6_1:94318280-94318299 Msa0899350:intron 60.0%
CAGGGTCTAGAGGGTAGCCT+CGG - chr6_1:94318298-94318317 Msa0899350:intron 60.0%
CTAGAGGGTAGCCTCGGAAG+TGG - chr6_1:94318304-94318323 Msa0899350:intron 60.0%
AGAGGGTAGCCTCGGAAGTG+GGG - chr6_1:94318306-94318325 Msa0899350:intron 60.0%
AAACAGCCTCCCCACTTCCG+AGG + chr6_1:94318318-94318337 None:intergenic 60.0%
!! GGCCCTAGTGGCGGTTTTGG+TGG - chr6_1:94316532-94316551 Msa0899350:intron 65.0%
!!! GGCGGTTTTGGTGGTGGTGG+TGG - chr6_1:94316541-94316560 Msa0899350:three_prime_UTR 65.0%
TTGTTGCCGCCATGGGGCAG+TGG - chr6_1:94316586-94316605 Msa0899350:three_prime_UTR 65.0%
CCTGGTCTCTAGACCCCACC+AGG + chr6_1:94318282-94318301 None:intergenic 65.0%
CCTGGTGGGGTCTAGAGACC+AGG - chr6_1:94318279-94318298 Msa0899350:intron 65.0%
CGAGGCTACCCTCTAGACCC+TGG + chr6_1:94318300-94318319 None:intergenic 65.0%
GGGTAGCCTCGGAAGTGGGG+AGG - chr6_1:94318309-94318328 Msa0899350:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 94316105 94321235 94316105 ID=Msa0899350;Name=Msa0899350
chr6_1 mRNA 94316105 94321235 94316105 ID=Msa0899350-mRNA-1;Parent=Msa0899350;Name=Msa0899350-mRNA-1;_AED=0.26;_eAED=0.26;_QI=169|0.5|0.66|1|0|0.33|3|421|376
chr6_1 exon 94316105 94316437 94316105 ID=Msa0899350-mRNA-1:exon:16112;Parent=Msa0899350-mRNA-1
chr6_1 exon 94316535 94316622 94316535 ID=Msa0899350-mRNA-1:exon:16111;Parent=Msa0899350-mRNA-1
chr6_1 exon 94319936 94321235 94319936 ID=Msa0899350-mRNA-1:exon:16110;Parent=Msa0899350-mRNA-1
chr6_1 five_prime_UTR 94321067 94321235 94321067 ID=Msa0899350-mRNA-1:five_prime_utr;Parent=Msa0899350-mRNA-1
chr6_1 CDS 94319936 94321066 94319936 ID=Msa0899350-mRNA-1:cds;Parent=Msa0899350-mRNA-1
chr6_1 three_prime_UTR 94316535 94316622 94316535 ID=Msa0899350-mRNA-1:three_prime_utr;Parent=Msa0899350-mRNA-1
chr6_1 three_prime_UTR 94316105 94316437 94316105 ID=Msa0899350-mRNA-1:three_prime_utr;Parent=Msa0899350-mRNA-1
Gene Sequence

>Msa0899350

ATGGACGACATGGAAGACGATTCAAGATACCCATCAAAAGGGTACCCTTTACGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGTAACTTACAATATCAACGCTACAACGATCGCGAAGAAGATTTCGAAGACGATGAACCCGAAGAATTCGATGATTATAACGTAGATGAAGACGGAATTGGAAATGGGTATGTTGGAAATTTTGAAGAAAATGTTGGGTTTGTTAGAAAAAAGAGAAAAATGCGAAGTGGCCCTAGTGGCGGTTTTGGTGGTGGTGGTGGTGGTTCTATGTCGAATTATGAATTGTTGCCGCCATGGGGCAGTGGTAAATTTTCGAACTTTAATCGTGGTGGAAGTTCGAGTTCTGTCCATTCCTCTGGGTCGGAGGAATGGACAGAACACGCGACGTTTGTGTTGTTAGAGATATGGGGTGAGAAGTTTCTTCAAATTGGGAGGAATAGTTTGAGATCAGAGGAATGGCATGAAGTTGCTGAGAAAGTTTCTGAGGAGTTGAAAGTTGAAAGGAATGTGGCACAGTGTAGGAGTGTATTGGATAAGGTGAAGAGGAGATATAAGAAAGAGAAGAGTAGAATGGATGAAATGGGTTTGGGTTTAAGTTCTTGTAAATGGCCATTTTTCAAGAAGATGGATATGTTGATGTCGTCGAGTGCGAGACAAGAGTATGGACTTTCTTGTGGTGTTGATTCAGGGGAGTATGTGTTTATGAATACCAGGGTTTATTTGAATAGGTCGAATGGATTTGATGAGATGAGGGATAGTCCTGGTGAGTCTGAGAGTTCTGAGGATGATGATGATGAGGATGAGGATTTTGATGGCGATGAGGATGATGTCGATAGGGAAGAGGAGGAGGCTTCGTATAGGATTTTGGCTGATTCGATTCAAAAATTTGGGAATATATATGAGAAGATTGAGAATACTAAGAGGCAACAGATGATGGAGTTGGAGAAGGTGAGGTTGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGATAGGGCTCAGGCTGAAATATCGAAAATACAGGAAGCAGTAGATGATGCTGATGGTGACGATGAGGACACAGACACTTCTGCTGATAATCTCAGTGAATAA

Protein sequence

>Msa0899350

MDDMEDDSRYPSKGYPLRRKNPNLRQKHPIRNLQYQRYNDREEDFEDDEPEEFDDYNVDEDGIGNGYVGNFEENVGFVRKKRKMRSGPSGGFGGGGGGSMSNYELLPPWGSGKFSNFNRGGSSSSVHSSGSEEWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHEVAEKVSEELKVERNVAQCRSVLDKVKRRYKKEKSRMDEMGLGLSSCKWPFFKKMDMLMSSSARQEYGLSCGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESSEDDDDEDEDFDGDEDDVDREEEEASYRILADSIQKFGNIYEKIENTKRQQMMELEKVRLDFNRELELQKKQILDRAQAEISKIQEAVDDADGDDEDTDTSADNLSE*