AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480780 MtrunA17_Chr4g0046381 98.211 1062 16 2 1 1061 1 1060 0.0 2137
Msa0480780 MtrunA17_Chr8g0367751 98.701 154 2 0 427 580 1 154 7.21e-100 311
Msa0480780 MtrunA17_Chr7g0260571 28.861 395 244 13 49 429 41 412 2.66e-31 130
Msa0480780 MtrunA17_Chr1g0184871 34.752 141 89 2 49 187 37 176 5.74e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480780 AT5G46070.1 63.501 1074 365 8 1 1059 1 1062 0.0 1320
Msa0480780 AT1G03830.2 33.487 1084 582 18 37 1061 10 1013 7.09e-160 499
Msa0480780 AT1G03830.1 32.380 1084 572 20 37 1061 10 991 3.62e-144 457
Msa0480780 AT2G38840.1 30.446 381 234 13 49 421 42 399 7.24e-33 136

Find 247 sgRNAs with CRISPR-Local

Find 633 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTCGTGTTAGAGCTTC+TGG 0.217599 3_3:-86342956 Msa0480780:CDS
TTGATGTAGGGAGTCAATTT+TGG 0.236521 3_3:+86336488 None:intergenic
GAACAGCCAGTGAGAATATC+TGG 0.241610 3_3:+86343250 None:intergenic
TCAGATTCTTGAACAACTTT+TGG 0.243272 3_3:-86336586 Msa0480780:CDS
TGAAGAATAGCGACGGCTTC+TGG 0.244650 3_3:+86344711 None:intergenic
TTTGGCTTCTGAAGTTTATA+TGG 0.244661 3_3:-86341041 Msa0480780:CDS
TTCAAATGCCATACATTCTA+TGG 0.256941 3_3:-86338583 Msa0480780:CDS
ATAATGTAGCTCGTCTAATA+TGG 0.265458 3_3:+86335779 None:intergenic
TGAATATCTCTTCGAAATTC+AGG 0.265912 3_3:+86341950 None:intergenic
CCATTCAAGGTCCTGGAAAA+TGG 0.269211 3_3:-86338240 Msa0480780:CDS
TAATTTCTTCTTATCGTTGA+TGG 0.287384 3_3:+86337909 None:intergenic
GAAGGATTTAGAAGCACTTC+TGG 0.288775 3_3:-86336640 Msa0480780:CDS
TTGGTGGCAGGACTTCTATT+TGG 0.301399 3_3:-86342753 Msa0480780:intron
AAGACTTCCGCGTCTGAAAT+AGG 0.302341 3_3:-86342929 Msa0480780:CDS
GTCAGTTCTCGCTTAAGCTT+CGG 0.302731 3_3:+86336198 None:intergenic
TCAGTTCTCGCTTAAGCTTC+GGG 0.316124 3_3:+86336199 None:intergenic
GCTTCAGAAATTCATCAAAA+AGG 0.324812 3_3:-86340801 Msa0480780:CDS
CTGCACTACTGCGGGATTTG+AGG 0.333363 3_3:+86337698 None:intergenic
AGAAGAGTTCTCTGGAACTT+TGG 0.337253 3_3:-86337500 Msa0480780:CDS
GTGCCGTAGGGCTTATGATT+TGG 0.341173 3_3:-86341059 Msa0480780:CDS
ATAGTTGCTCCAACTTGCTT+TGG 0.353087 3_3:+86341893 None:intergenic
TGTATCATAACTCCTTATCT+TGG 0.353386 3_3:+86337100 None:intergenic
TAGATTGAACCACCATCTTC+TGG 0.355525 3_3:+86336285 None:intergenic
TGTTTGTGGTCGTGCTCGCC+AGG 0.358739 3_3:-86344658 Msa0480780:CDS
ATCGGTGTCGTTTCTGTTTG+TGG 0.362431 3_3:-86344672 Msa0480780:CDS
AGGGTGAAGCATTCCCTATC+TGG 0.363281 3_3:+86342127 None:intergenic
CACATACACAGGCAAATAAC+CGG 0.367024 3_3:-86336548 Msa0480780:CDS
AACTCTGAAATTAGAGTTGA+AGG 0.370925 3_3:-86337291 Msa0480780:intron
TACTATTTCTTCCTCCTGGC+AGG 0.371704 3_3:-86341801 Msa0480780:intron
CTTGCTTTGCGGTCTGTTCA+AGG 0.378443 3_3:-86342683 Msa0480780:CDS
TTCATTCAACCGACGTTGTA+AGG 0.380049 3_3:+86338011 None:intergenic
AGGAAGGGAGAAAGATAATC+TGG 0.381254 3_3:-86336748 Msa0480780:CDS
CTTTGTATGATCCTCTTCAT+TGG 0.383035 3_3:+86336230 None:intergenic
TGCACTACTGCGGGATTTGA+GGG 0.400154 3_3:+86337699 None:intergenic
TTGCTTCCCTCTCATATGAC+TGG 0.404679 3_3:+86337009 None:intergenic
AAAAGTTACTCACTGATATC+TGG 0.406828 3_3:+86342062 None:intergenic
GACCCTGTACCAAAGGGCTT+TGG 0.408344 3_3:-86343501 Msa0480780:CDS
AGAGAAGGCAGCAATTGTTC+AGG 0.413046 3_3:-86337566 Msa0480780:CDS
CCTTGTCTACTGCGATGAAA+AGG 0.414963 3_3:-86344751 Msa0480780:CDS
TTGAAGAGGACCGCACTTGA+TGG 0.416779 3_3:-86343463 Msa0480780:CDS
AGCAATGATTATCATATTGT+AGG 0.417295 3_3:-86335905 Msa0480780:three_prime_UTR
TGCCTACTATTTCTTCCTCC+TGG 0.418883 3_3:-86341805 Msa0480780:CDS
CTTGTAATGCTTCTGATGCT+AGG 0.420952 3_3:-86338542 Msa0480780:CDS
TTCACTGGCTTCCAGCCGCT+TGG 0.422240 3_3:+86337969 None:intergenic
CATCCAAAGCCCTTTGGTAC+AGG 0.424224 3_3:+86343498 None:intergenic
TGCTGCTGCCAACCTTGCTT+CGG 0.431643 3_3:+86337675 None:intergenic
TTACAAAAGGAATGCATTCA+TGG 0.431741 3_3:-86338622 Msa0480780:CDS
CAACCGATGGTAAGCGATTG+AGG 0.435894 3_3:-86336416 Msa0480780:CDS
AGCAACAAGATCTTTCTTCA+TGG 0.439505 3_3:+86336134 None:intergenic
CTTAGGACTGGTTGTACTCC+TGG 0.439972 3_3:+86336317 None:intergenic
GATAGAGCACGGGCTGAAGC+AGG 0.446378 3_3:-86336861 Msa0480780:CDS
CTCTAGTAAGCAGGAATCCA+TGG 0.447658 3_3:-86337797 Msa0480780:CDS
TTGGAAAAGAAAATATGAAC+AGG 0.447825 3_3:-86337773 Msa0480780:CDS
CATTGTTTAAAGGCCGTACA+AGG 0.448349 3_3:+86342107 None:intergenic
CGATGCGTCACCGCAATCTC+CGG 0.449488 3_3:-86344832 Msa0480780:CDS
TGCTTCGGCTGCACTACTGC+GGG 0.453229 3_3:+86337690 None:intergenic
CGCAATCTCCGGCGCCGGCG+AGG 0.456199 3_3:-86344821 Msa0480780:CDS
TTCTAGCTTATTGAAAACAT+TGG 0.457291 3_3:-86337821 Msa0480780:CDS
CCTCTCATATGACTGGGCCT+TGG 0.458441 3_3:+86337016 None:intergenic
AACAGATCAAATAGATAGAT+AGG 0.458492 3_3:+86335725 None:intergenic
TATCTATTACCCTCTTGAAA+AGG 0.460525 3_3:+86338061 None:intergenic
GTACCAAAGGGCTTTGGATG+TGG 0.460841 3_3:-86343495 Msa0480780:CDS
ACTCACTTCCTCAGGTGGCT+TGG 0.464273 3_3:+86341003 None:intergenic
GCAAGCTAATCGTCGCTCAC+TGG 0.465514 3_3:-86337854 Msa0480780:CDS
TTGCTGTCTTCTTGCAGCAA+AGG 0.466814 3_3:-86338210 Msa0480780:intron
GCAACAAGATCTTTCTTCAT+GGG 0.467500 3_3:+86336135 None:intergenic
TGGCTGTGTGTACTTAGGAC+TGG 0.467783 3_3:+86336305 None:intergenic
AGCAAGTTCTAGATAGTCTC+GGG 0.469812 3_3:+86342700 None:intergenic
TGAAGCAGGCATGGCTCAGA+AGG 0.471929 3_3:-86336847 Msa0480780:CDS
TAAGGGGAGCTAAAAGAGCC+AGG 0.473037 3_3:-86336335 Msa0480780:CDS
ACTATCTAGAACTTGCTTTG+CGG 0.474260 3_3:-86342694 Msa0480780:CDS
GCGAATAGCTCTCGGTGGTC+CGG 0.477132 3_3:+86344773 None:intergenic
CGGAGTGATAAAGAAGCAAC+AGG 0.477719 3_3:+86336051 None:intergenic
GAATATGAAAAGTCCATTCA+AGG 0.479415 3_3:-86338253 Msa0480780:CDS
CGTGCCATCAAAACTTCCTA+TGG 0.479937 3_3:+86335882 None:intergenic
ATCTGAGTTCAAAAGATTTG+AGG 0.483402 3_3:-86336943 Msa0480780:CDS
GATTGCGGTGACGCATCGGC+GGG 0.485484 3_3:+86344837 None:intergenic
CTCATATCGCTTGATGTACT+CGG 0.485796 3_3:+86337936 None:intergenic
GCTTCTTTATCACTCCGTCT+AGG 0.486784 3_3:-86336045 Msa0480780:three_prime_UTR
GTCTTAAGAGAAGAGTTCTC+TGG 0.488034 3_3:-86337508 Msa0480780:CDS
GAAGATGGCCTCGCCGGCGC+CGG 0.491115 3_3:+86344813 None:intergenic
GAAAAGTCCATTCAAGGTCC+TGG 0.494569 3_3:-86338247 Msa0480780:CDS
GACCTTACTGACCAAGCGGC+TGG 0.494825 3_3:-86337980 Msa0480780:CDS
AGATGGTGGTTCAATCTATG+AGG 0.494878 3_3:-86336280 Msa0480780:CDS
ACTTAGTCAGCTCTTGATGT+AGG 0.496077 3_3:+86336475 None:intergenic
AGCAAGGTTGGCAGCAGCAA+GGG 0.496730 3_3:-86337671 Msa0480780:CDS
CTTGTCTACTGCGATGAAAA+GGG 0.497647 3_3:-86344750 Msa0480780:CDS
GGAAGCAATAGTATATCAGC+AGG 0.497850 3_3:-86336994 Msa0480780:CDS
AATAGATGCTTATGATCAAA+CGG 0.498795 3_3:-86343404 Msa0480780:intron
CTCGCCGGCGCCGGAGATTG+CGG 0.498820 3_3:+86344822 None:intergenic
AACATTGGACTCTAGTAAGC+AGG 0.500408 3_3:-86337806 Msa0480780:CDS
ACATTATTATTAATTAAGAC+TGG 0.500975 3_3:-86335763 Msa0480780:three_prime_UTR
TTGAAGAAGCAGAGTGCCGT+AGG 0.503816 3_3:-86341072 Msa0480780:CDS
TCTTCTGGCTGTGTGTACTT+AGG 0.505864 3_3:+86336300 None:intergenic
GAAGAGTGAGATGCAGAGAC+TGG 0.507152 3_3:-86336823 Msa0480780:CDS
TTGAACAACAGGATTACAAA+AGG 0.507556 3_3:-86338635 Msa0480780:intron
GAGTGCATCAAGATAAGATT+CGG 0.507604 3_3:+86341841 None:intergenic
GAACTGACAAAACATAACTT+TGG 0.508057 3_3:-86336183 Msa0480780:CDS
TTGTAATGCTTCTGATGCTA+GGG 0.508274 3_3:-86338541 Msa0480780:CDS
TGCTTCCCTCTCATATGACT+GGG 0.509387 3_3:+86337010 None:intergenic
GCTCCACATCCAAAGCCCTT+TGG 0.509572 3_3:+86343492 None:intergenic
TTCCAGCCGCTTGGTCAGTA+AGG 0.510381 3_3:+86337978 None:intergenic
ATTGGTACTTCTGCTCAAGA+TGG 0.512425 3_3:+86336964 None:intergenic
AGCACGGGCTGAAGCAGGCA+TGG 0.516913 3_3:-86336856 Msa0480780:CDS
TCTTCATCTTCTCAGTTCAC+CGG 0.517270 3_3:-86344792 Msa0480780:CDS
TAGTGCAGCCGAAGCAAGGT+TGG 0.519438 3_3:-86337683 Msa0480780:CDS
GATGAAGAAGATGGCCTCGC+CGG 0.522103 3_3:+86344807 None:intergenic
AGATCTTGTTGCTCTGTATG+AGG 0.522535 3_3:-86336124 Msa0480780:CDS
CCATACATTCTATGGAAAAG+AGG 0.523129 3_3:-86338575 Msa0480780:CDS
AGGAGGCTGATGAGTGGAAA+CGG 0.523697 3_3:-86337627 Msa0480780:CDS
GTAAGCAGGAATCCATGGAT+TGG 0.527042 3_3:-86337792 Msa0480780:CDS
CAAAACATAACTTTGGTGAT+CGG 0.527476 3_3:-86336176 Msa0480780:CDS
CGAGTACATCAAGCGATATG+AGG 0.528266 3_3:-86337935 Msa0480780:CDS
TGAAAATGATCTACAGCGAC+TGG 0.528388 3_3:-86342086 Msa0480780:CDS
CAATTTGTTTAACCGAAACA+AGG 0.530008 3_3:-86344865 Msa0480780:CDS
GTTTCGAATGAATGAAACAT+TGG 0.533871 3_3:-86336454 Msa0480780:CDS
TATTCTTCAGAGGTGATGAC+GGG 0.534020 3_3:-86336097 Msa0480780:exon
TTCGTGCTCTATTCCCAGAT+AGG 0.534115 3_3:-86342141 Msa0480780:CDS
CGGAGATTGCGGTGACGCAT+CGG 0.534432 3_3:+86344833 None:intergenic
CTTAGTCAGCTCTTGATGTA+GGG 0.535301 3_3:+86336476 None:intergenic
TTGCTTCGGCTGCACTACTG+CGG 0.535804 3_3:+86337689 None:intergenic
GGGAATGCTTCACCCTTGTA+CGG 0.536278 3_3:-86342120 Msa0480780:CDS
ATCTGGGAATAGAGCACGAA+TGG 0.537348 3_3:+86342144 None:intergenic
GAGACTGGCAATGGAAAGAC+TGG 0.537477 3_3:-86336808 Msa0480780:CDS
AATGCTAGTGCTGTAGGAGT+TGG 0.539159 3_3:-86340851 Msa0480780:CDS
ACAAGCTCAGTCTGCTCAAG+AGG 0.539174 3_3:-86337647 Msa0480780:CDS
CGCTATTCTTCAACTCGTCA+AGG 0.540905 3_3:-86344700 Msa0480780:CDS
CTCTTGAAAAGGTCAAGCAC+AGG 0.541952 3_3:+86338072 None:intergenic
GATAGATTACTCACTTCCTC+AGG 0.542341 3_3:+86340995 None:intergenic
GTCACCGCAATCTCCGGCGC+CGG 0.543657 3_3:-86344826 Msa0480780:CDS
TTGCTTTGCGGTCTGTTCAA+GGG 0.544567 3_3:-86342682 Msa0480780:CDS
GATTTGAGGAGGTTCAAGAA+AGG 0.544667 3_3:-86336929 Msa0480780:CDS
GCAGAGAGAGACTCTCAGCC+CGG 0.547945 3_3:+86336529 None:intergenic
CTTCCTCAGGTGGCTTGGAA+CGG 0.548072 3_3:+86341008 None:intergenic
TCGTGCTCTATTCCCAGATA+GGG 0.548667 3_3:-86342140 Msa0480780:CDS
CACATCGACCCTGTACCAAA+GGG 0.549082 3_3:-86343507 Msa0480780:CDS
AAGCAAGTTCTAGATAGTCT+CGG 0.551084 3_3:+86342699 None:intergenic
TCAAGTGCGGTCCTCTTCAA+AGG 0.551883 3_3:+86343466 None:intergenic
TGCCCTCAATCGCTTACCAT+CGG 0.552858 3_3:+86336413 None:intergenic
AACCGATGGTAAGCGATTGA+GGG 0.553509 3_3:-86336415 Msa0480780:CDS
GAGAGGAGAATTGAAACTCT+AGG 0.553809 3_3:-86336768 Msa0480780:CDS
GGGTGAAGCATTCCCTATCT+GGG 0.554975 3_3:+86342128 None:intergenic
CTGTAGGAGTTGGTGCAGCT+AGG 0.560333 3_3:-86340841 Msa0480780:CDS
GGAGAATTGAAACTCTAGGA+AGG 0.560800 3_3:-86336764 Msa0480780:CDS
ACAAGCAGTTCATAAGTCAA+TGG 0.561022 3_3:-86340882 Msa0480780:CDS
AGCAAAATCTGCTCTAGAGA+AGG 0.562179 3_3:-86337581 Msa0480780:CDS
TCGGTGATACCAATCAATAC+AGG 0.562467 3_3:+86341860 None:intergenic
AAGCAAGGTTGGCAGCAGCA+AGG 0.563979 3_3:-86337672 Msa0480780:CDS
GAAGGTGCAACAAAGAGAGA+AGG 0.564197 3_3:-86336658 Msa0480780:CDS
GTATTCTTCAGAGGTGATGA+CGG 0.567793 3_3:-86336098 Msa0480780:exon
ATCCAAAGCCCTTTGGTACA+GGG 0.569599 3_3:+86343499 None:intergenic
GTTTGTGGTCGTGCTCGCCA+GGG 0.569612 3_3:-86344657 Msa0480780:CDS
AGATTGCGGTGACGCATCGG+CGG 0.570325 3_3:+86344836 None:intergenic
AGAACAAGGCCAAAGCAAGT+TGG 0.571365 3_3:-86341902 Msa0480780:CDS
ATTCTATGGAAAAGAGGCTG+AGG 0.571876 3_3:-86338569 Msa0480780:CDS
ATGCCGTGGTTACTGACATA+CGG 0.572365 3_3:-86336004 Msa0480780:three_prime_UTR
GAGAGCAACGGATTCAGAGA+AGG 0.573561 3_3:-86336712 Msa0480780:CDS
ACACATCGACCCTGTACCAA+AGG 0.575105 3_3:-86343508 Msa0480780:CDS
AGTTGCGAAGCTCGAAGAGA+AGG 0.575118 3_3:-86336676 Msa0480780:CDS
GTTGGAGCAACTATGATGAC+AGG 0.575865 3_3:-86341884 Msa0480780:CDS
CTGCAGCTCTTAGGAAGCAG+TGG 0.576573 3_3:-86343550 Msa0480780:intron
AACTGAGAAGATGAAGAAGA+TGG 0.577774 3_3:+86344798 None:intergenic
AAGTACACACAGCCAGAAGA+TGG 0.578688 3_3:-86336297 Msa0480780:CDS
AGCTCAGTCTGCTCAAGAGG+AGG 0.581087 3_3:-86337644 Msa0480780:CDS
CACAGATTGAGAGGGCTGAG+AGG 0.582400 3_3:-86336785 Msa0480780:CDS
GCAGTAGTGCAGCCGAAGCA+AGG 0.584397 3_3:-86337687 Msa0480780:CDS
AGCTGCAAGGGCTACTGAAG+TGG 0.586115 3_3:-86336886 Msa0480780:CDS
TGAGTTCAAAAGATTTGAGG+AGG 0.586772 3_3:-86336940 Msa0480780:CDS
TGCCAGGAGGAAGAAATAGT+AGG 0.587287 3_3:+86341803 None:intergenic
ACAAACAGAAACGACACCGA+TGG 0.587350 3_3:+86344674 None:intergenic
ATGACAGGTCCTGTATTGAT+TGG 0.589135 3_3:-86341869 Msa0480780:CDS
AAAGACTGGCACAGATTGAG+AGG 0.589219 3_3:-86336794 Msa0480780:CDS
CTGAAGTGGCTGATAGAGCA+CGG 0.590845 3_3:-86336872 Msa0480780:CDS
GAGGACCGCACTTGATGGAA+CGG 0.593749 3_3:-86343458 Msa0480780:CDS
AAACAAGCAGACACAGTTGA+GGG 0.594533 3_3:-86337536 Msa0480780:CDS
GTTTCATTTACTCAGATGGG+TGG 0.594616 3_3:-86343031 Msa0480780:intron
TAGCATGTTCATTTACAACC+AGG 0.595059 3_3:-86343220 Msa0480780:intron
TTTATCAAGGCAGAAAGCTG+AGG 0.595083 3_3:-86337749 Msa0480780:CDS
GAGAATTGAAACTCTAGGAA+GGG 0.595834 3_3:-86336763 Msa0480780:CDS
TTCTCGCTTAAGCTTCGGGA+TGG 0.596156 3_3:+86336203 None:intergenic
TGAAGTGGCTGATAGAGCAC+GGG 0.596582 3_3:-86336871 Msa0480780:CDS
AACAGCCAGTGAGAATATCT+GGG 0.596996 3_3:+86343251 None:intergenic
TCTAGATCTCATTGATGCCG+TGG 0.597767 3_3:-86336018 Msa0480780:three_prime_UTR
AGGGAGAAAGATAATCTGGA+AGG 0.598572 3_3:-86336744 Msa0480780:CDS
TGAGATGCAGAGACTGGCAA+TGG 0.599747 3_3:-86336817 Msa0480780:CDS
CAAACAGAAACGACACCGAT+GGG 0.600094 3_3:+86344675 None:intergenic
TAGACAAGGCGAATAGCTCT+CGG 0.601053 3_3:+86344765 None:intergenic
CAGCTCTTAGGAAGCAGTGG+TGG 0.601493 3_3:-86343547 Msa0480780:CDS
AAGCGGCTGGAAGCCAGTGA+AGG 0.601767 3_3:-86337967 Msa0480780:CDS
CTCAAGAGGAGGCTGATGAG+TGG 0.603803 3_3:-86337633 Msa0480780:CDS
AGATTACTCACTTCCTCAGG+TGG 0.604534 3_3:+86340998 None:intergenic
AAATAGTAGGCACGGCACCA+TGG 0.605148 3_3:+86341816 None:intergenic
TTCTATGGAAAAGAGGCTGA+GGG 0.608007 3_3:-86338568 Msa0480780:CDS
TAGGGTTGATAATGTTGCAA+AGG 0.610623 3_3:-86338523 Msa0480780:intron
TGAAAAGGGAAAGTTCCGTA+TGG 0.611276 3_3:-86344736 Msa0480780:CDS
GCAGCTAGGAAGAAATATGA+AGG 0.611898 3_3:-86340827 Msa0480780:CDS
CTTCTACTATTAGACAGTGA+AGG 0.613868 3_3:-86343427 Msa0480780:CDS
ATTATCATATTGTAGGCCAT+AGG 0.614814 3_3:-86335898 Msa0480780:three_prime_UTR
GGAGGAAGAAATAGTAGGCA+CGG 0.614963 3_3:+86341808 None:intergenic
TGTGGAGCGCACCTTTGAAG+AGG 0.615203 3_3:-86343477 Msa0480780:CDS
TCTGCAGCTACAGTCTGCAC+AGG 0.615853 3_3:-86336511 Msa0480780:CDS
AGGTGAATTGCAGAGAGCAA+CGG 0.618861 3_3:-86336724 Msa0480780:CDS
CAGCACCCAGATATTCTCAC+TGG 0.619533 3_3:-86343256 Msa0480780:CDS
AATGAAATCTGAAAATGCCA+AGG 0.620388 3_3:-86337033 Msa0480780:CDS
TAGCTTGCAATTCAGTAATG+CGG 0.623157 3_3:+86337869 None:intergenic
ATGAGGAATGTATTCTTCAG+AGG 0.626001 3_3:-86336107 Msa0480780:CDS
AGAGCGTGAGGCACATACAC+AGG 0.626998 3_3:-86336559 Msa0480780:CDS
TATCTTGATGCACTCAACCA+TGG 0.627907 3_3:-86341833 Msa0480780:CDS
TAGTCAGCAAGCCAATGAAG+AGG 0.628518 3_3:-86336241 Msa0480780:CDS
TCAAGGCAGAAAGCTGAGGA+AGG 0.628836 3_3:-86337745 Msa0480780:CDS
CGACGGCTTCTGGATCCATA+CGG 0.629966 3_3:+86344721 None:intergenic
AGGCTGCTGAGTCCAAGATA+AGG 0.630324 3_3:-86337112 Msa0480780:CDS
ACATACACAGGCAAATAACC+GGG 0.631070 3_3:-86336547 Msa0480780:CDS
CAAACAAGCAGACACAGTTG+AGG 0.634550 3_3:-86337537 Msa0480780:CDS
CAAGGCCCAGTCATATGAGA+GGG 0.637107 3_3:-86337015 Msa0480780:CDS
GACGAGTTGAAGAATAGCGA+CGG 0.639893 3_3:+86344704 None:intergenic
TCTTGAAAAGGTCAAGCACA+GGG 0.640354 3_3:+86338073 None:intergenic
CCAAGGCCCAGTCATATGAG+AGG 0.640589 3_3:-86337016 Msa0480780:CDS
GATGGTGGTTCAATCTATGA+GGG 0.640909 3_3:-86336279 Msa0480780:CDS
CAACTCGTCAAGGAACCCAT+CGG 0.642449 3_3:-86344690 Msa0480780:CDS
AAGCCAAATCATAAGCCCTA+CGG 0.644770 3_3:+86341056 None:intergenic
GTTCTCTTGCCTTACAACGT+CGG 0.646107 3_3:-86338020 Msa0480780:CDS
TGCTGATTCTGTACAAGACA+TGG 0.648072 3_3:-86336376 Msa0480780:CDS
TTCAATCTATGAGGGTGCAG+AGG 0.648196 3_3:-86336271 Msa0480780:CDS
TCAGATGGGTGGTATAGATG+AGG 0.652331 3_3:-86343020 Msa0480780:intron
TGACCGTTCCAAGCCACCTG+AGG 0.652751 3_3:-86341011 Msa0480780:CDS
AGTCCGTATGTCAGTAACCA+CGG 0.654364 3_3:+86336001 None:intergenic
GAGATCTAGACAGACCTAGA+CGG 0.655685 3_3:+86336031 None:intergenic
ATTGTTTAAAGGCCGTACAA+GGG 0.658022 3_3:+86342108 None:intergenic
AGTAAGCTAAAGACAACCGA+TGG 0.658276 3_3:-86336429 Msa0480780:CDS
AGATGACCTTACTGACCAAG+CGG 0.663172 3_3:-86337984 Msa0480780:CDS
TGAAGAAGCAGAGTGCCGTA+GGG 0.666325 3_3:-86341071 Msa0480780:CDS
AAGACTGGCACAGATTGAGA+GGG 0.666890 3_3:-86336793 Msa0480780:CDS
ATTGCGGTGACGCATCGGCG+GGG 0.667360 3_3:+86344838 None:intergenic
TTGAGGGCAGAGAATGACAA+TGG 0.670638 3_3:-86336399 Msa0480780:CDS
TTTGAGTGACTAGAGAAAGA+CGG 0.676465 3_3:+86342987 None:intergenic
ATTCTTCAGAGGTGATGACG+GGG 0.682906 3_3:-86336096 Msa0480780:exon
TTCTTCAGAGGTGATGACGG+GGG 0.683154 3_3:-86336095 Msa0480780:exon
GTACTCCGTTCCATCAAGTG+CGG 0.691482 3_3:+86343453 None:intergenic
TGGATAAAGATAAAACACAC+AGG 0.695749 3_3:-86336620 Msa0480780:CDS
CAAAAGGAATGCATTCATGG+AGG 0.709466 3_3:-86338619 Msa0480780:CDS
TACACACAGCCAGAAGATGG+TGG 0.710446 3_3:-86336294 Msa0480780:CDS
TTTAAAACTAACCTGCCAGG+AGG 0.711712 3_3:+86341790 None:intergenic
GCAAGTTCTAGATAGTCTCG+GGG 0.731190 3_3:+86342701 None:intergenic
AAACTGTCCTATTTCAGACG+CGG 0.731251 3_3:+86342922 None:intergenic
ACAAGGCGAATAGCTCTCGG+TGG 0.744749 3_3:+86344768 None:intergenic
ATACAGAAATATCGTCACTG+AGG 0.776970 3_3:-86337082 Msa0480780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTTTTCAATCA+AGG - chr3_3:86341218-86341237 Msa0480780:intron 10.0%
!! CAGAATTAATAATAAAAAAA+AGG + chr3_3:86341749-86341768 None:intergenic 10.0%
!!! CTTTTTTTTATTATTAATTC+TGG - chr3_3:86341747-86341766 Msa0480780:intron 10.0%
!! TTTGCAAAAAAAAAAAAAAA+AGG - chr3_3:86342326-86342345 Msa0480780:intron 10.0%
!!! TATTTGTTGATGATTTTTTT+TGG - chr3_3:86336485-86336504 Msa0480780:CDS 15.0%
!!! ATTTGTTGATGATTTTTTTT+GGG - chr3_3:86336486-86336505 Msa0480780:CDS 15.0%
!!! AATTTTAAAAAAGGTTCATA+AGG + chr3_3:86336707-86336726 None:intergenic 15.0%
!!! ATAGGTTTTTATTCATAATT+GGG - chr3_3:86338223-86338242 Msa0480780:CDS 15.0%
!! TAAAAGTTATAAGCATATTA+GGG - chr3_3:86339953-86339972 Msa0480780:intron 15.0%
!!! ACTATTATTTTATCTGTATT+CGG - chr3_3:86340091-86340110 Msa0480780:intron 15.0%
!!! AAACTAATTATTTTGCATAA+GGG + chr3_3:86341444-86341463 None:intergenic 15.0%
!!! TCAAGTCTTTATTTTTAATA+TGG - chr3_3:86341943-86341962 Msa0480780:CDS 15.0%
!! AATAATTAATATTGAACAAC+AGG - chr3_3:86342027-86342046 Msa0480780:intron 15.0%
!! CAAAAAAAAAAAAAAAAGGA+TGG - chr3_3:86342330-86342349 Msa0480780:intron 15.0%
!!! ATATTTTTTTAGGAAAAAGA+TGG + chr3_3:86342557-86342576 None:intergenic 15.0%
!! ACATTATTATTAATTAAGAC+TGG - chr3_3:86344910-86344929 Msa0480780:five_prime_UTR 15.0%
!!! GAATTCTAGTAGATTTTTAT+CGG - chr3_3:86336071-86336090 Msa0480780:three_prime_UTR 20.0%
!!! TTTTATCGGTTTTGAAATTT+AGG - chr3_3:86336085-86336104 Msa0480780:exon 20.0%
!!! TTTATCGGTTTTGAAATTTA+GGG - chr3_3:86336086-86336105 Msa0480780:exon 20.0%
!!! TCGCAGTTAAATTTTAAAAA+AGG + chr3_3:86336716-86336735 None:intergenic 20.0%
!! GATATATATGTAGAACATTA+TGG - chr3_3:86336953-86336972 Msa0480780:CDS 20.0%
!!! TTGTTGTTATTATAGATTTG+TGG - chr3_3:86337085-86337104 Msa0480780:CDS 20.0%
!!! TACATTTATTTTTACTACAC+AGG - chr3_3:86337387-86337406 Msa0480780:intron 20.0%
!!! ACATTTATTTTTACTACACA+GGG - chr3_3:86337388-86337407 Msa0480780:intron 20.0%
!!! AATTTTTCCTAGGAAAATAT+AGG + chr3_3:86337498-86337517 None:intergenic 20.0%
!!! TTTTCATTATTTCAGAACAT+AGG - chr3_3:86338115-86338134 Msa0480780:intron 20.0%
!!! GATAGGTTTTTATTCATAAT+TGG - chr3_3:86338222-86338241 Msa0480780:CDS 20.0%
!!! AGATCATTTTCATTGTTTAA+AGG + chr3_3:86338579-86338598 None:intergenic 20.0%
!! TCTTCGTTTATTAATAACTT+TGG + chr3_3:86339456-86339475 None:intergenic 20.0%
!!! AATATTGGTTTTGTTGTTAT+TGG - chr3_3:86339567-86339586 Msa0480780:intron 20.0%
!! GTAAAAGTTATAAGCATATT+AGG - chr3_3:86339952-86339971 Msa0480780:intron 20.0%
!! TACAGATAAAATAATAGTCA+AGG + chr3_3:86340089-86340108 None:intergenic 20.0%
!! AATAGTCTAAACAAATACAT+TGG + chr3_3:86340210-86340229 None:intergenic 20.0%
!!! GTATTTGTTTAGACTATTTT+TGG - chr3_3:86340212-86340231 Msa0480780:intron 20.0%
!! AGGTTAGCATTAAAAATATT+TGG + chr3_3:86340281-86340300 None:intergenic 20.0%
!! TTCTCAAATAATTATGCAAA+CGG - chr3_3:86340843-86340862 Msa0480780:CDS 20.0%
!!! ATTTTGATCTTATAGCTTAT+AGG + chr3_3:86341402-86341421 None:intergenic 20.0%
!!! AACTAATTATTTTGCATAAG+GGG + chr3_3:86341443-86341462 None:intergenic 20.0%
!!! CAAACTAATTATTTTGCATA+AGG + chr3_3:86341445-86341464 None:intergenic 20.0%
!!! TATGCAAAATAATTAGTTTG+TGG - chr3_3:86341445-86341464 Msa0480780:intron 20.0%
!!! ATAATTAGTTTGTGGTATAT+TGG - chr3_3:86341453-86341472 Msa0480780:intron 20.0%
!! AAAATTCCAAATGATAATCA+GGG - chr3_3:86341879-86341898 Msa0480780:CDS 20.0%
!! TTAAAAATAAAGACTTGATC+TGG + chr3_3:86341941-86341960 None:intergenic 20.0%
!!! CAACAGAAACATATTTTTTT+AGG + chr3_3:86342567-86342586 None:intergenic 20.0%
!! AAACAATATGCAAAAGAAAT+GGG + chr3_3:86343231-86343250 None:intergenic 20.0%
!! TAAACAATATGCAAAAGAAA+TGG + chr3_3:86343232-86343251 None:intergenic 20.0%
! CTAATTACCAATAAATACAC+CGG + chr3_3:86336381-86336400 None:intergenic 25.0%
!! GGTGTATTTATTGGTAATTA+GGG - chr3_3:86336380-86336399 Msa0480780:CDS 25.0%
!!! TTTATTGGTAATTAGGGTTT+TGG - chr3_3:86336386-86336405 Msa0480780:CDS 25.0%
!! TGATCATTGTAGATTTTTGT+TGG - chr3_3:86336425-86336444 Msa0480780:CDS 25.0%
!! GATCATTGTAGATTTTTGTT+GGG - chr3_3:86336426-86336445 Msa0480780:CDS 25.0%
!! GAAAAGTTGAATTTTACTCT+TGG + chr3_3:86336824-86336843 None:intergenic 25.0%
! TAGAGATTAATGAGTTGTAT+AGG - chr3_3:86336925-86336944 Msa0480780:CDS 25.0%
! AGAGATTAATGAGTTGTATA+GGG - chr3_3:86336926-86336945 Msa0480780:CDS 25.0%
! TACAACAATAACAACTAACT+AGG + chr3_3:86337019-86337038 None:intergenic 25.0%
! AATAGATGCTTATGATCAAA+CGG - chr3_3:86337269-86337288 Msa0480780:intron 25.0%
!! TAACACAAGTAATTTTTCCT+AGG + chr3_3:86337508-86337527 None:intergenic 25.0%
! GAAAAGATGTACAACAAAAA+GGG + chr3_3:86337591-86337610 None:intergenic 25.0%
! AGAAAAGATGTACAACAAAA+AGG + chr3_3:86337592-86337611 None:intergenic 25.0%
!!! TTTTTGTTGTACATCTTTTC+TGG - chr3_3:86337591-86337610 Msa0480780:CDS 25.0%
! GTCATGATATTGTAGTTTAA+TGG - chr3_3:86337844-86337863 Msa0480780:CDS 25.0%
! TTATATACCTCAATTACTTC+AGG + chr3_3:86338075-86338094 None:intergenic 25.0%
! ATCCTTTACAAAATTATCCT+AGG + chr3_3:86338184-86338203 None:intergenic 25.0%
! AACAAATCAATTAAACTAGC+AGG + chr3_3:86338259-86338278 None:intergenic 25.0%
! ACAAATAGAATGATTCAAAG+TGG + chr3_3:86338381-86338400 None:intergenic 25.0%
!! CATGCATTTTCAAAAAAGTT+TGG + chr3_3:86338407-86338426 None:intergenic 25.0%
! TTTACAGCACATTGAAAAAT+TGG - chr3_3:86338436-86338455 Msa0480780:intron 25.0%
!!! AGTTTGTTTTTGAAAGAACA+AGG - chr3_3:86338757-86338776 Msa0480780:intron 25.0%
! TCATTAAGATTATCCTATCA+AGG - chr3_3:86339019-86339038 Msa0480780:intron 25.0%
!!! GATCATTTTATTTCCTTGAT+AGG + chr3_3:86339035-86339054 None:intergenic 25.0%
! TCGTATCAAATAATGTATAG+CGG + chr3_3:86339190-86339209 None:intergenic 25.0%
! AACACTTGATCACATTAAAA+GGG + chr3_3:86339387-86339406 None:intergenic 25.0%
!! AAAAATAGTTTTCCAGAGTT+CGG - chr3_3:86339503-86339522 Msa0480780:intron 25.0%
! AAAATGTAAGTCAACAATCT+CGG - chr3_3:86339531-86339550 Msa0480780:intron 25.0%
! TTGGTGAAAAATATCTTGTT+TGG - chr3_3:86340231-86340250 Msa0480780:intron 25.0%
!! TAACCTTTTAAACCTGAAAT+TGG - chr3_3:86340295-86340314 Msa0480780:intron 25.0%
!! AACCTTTTAAACCTGAAATT+GGG - chr3_3:86340296-86340315 Msa0480780:intron 25.0%
!! AATTTAAAATCCCCAATTTC+AGG + chr3_3:86340310-86340329 None:intergenic 25.0%
!!! TTAAATTTCACGCTTTTTGA+AGG - chr3_3:86340323-86340342 Msa0480780:intron 25.0%
! AAGAACATTTATTGTCTATC+AGG + chr3_3:86340532-86340551 None:intergenic 25.0%
! ATAGTTGATTGAGATCATTA+TGG + chr3_3:86340653-86340672 None:intergenic 25.0%
! TGCATAATTATTTGAGAAGA+AGG + chr3_3:86340841-86340860 None:intergenic 25.0%
! TCTCAAATAATTATGCAAAC+GGG - chr3_3:86340844-86340863 Msa0480780:CDS 25.0%
!! CAAACGGGATATTTTATAAA+TGG - chr3_3:86340859-86340878 Msa0480780:CDS 25.0%
! GAAGTTAATCACATAATTGT+CGG - chr3_3:86340951-86340970 Msa0480780:intron 25.0%
!!! TTTTTTTCAATCAAGGTTAC+AGG - chr3_3:86341225-86341244 Msa0480780:intron 25.0%
!!! TTTTTTCAATCAAGGTTACA+GGG - chr3_3:86341226-86341245 Msa0480780:intron 25.0%
! ATAAGCTCATTTGACTAAAA+AGG + chr3_3:86341370-86341389 None:intergenic 25.0%
! GTATATTGGAGTGATTATTA+TGG - chr3_3:86341467-86341486 Msa0480780:intron 25.0%
!! ACCATATCATTTTCAAATAC+AGG + chr3_3:86341523-86341542 None:intergenic 25.0%
! TTACATTTCAAATGAGACAT+AGG - chr3_3:86341576-86341595 Msa0480780:intron 25.0%
! ATATTGCACATATAAGAATC+AGG + chr3_3:86341701-86341720 None:intergenic 25.0%
! ACCCTGTTATAGTATATTTA+GGG - chr3_3:86341856-86341875 Msa0480780:CDS 25.0%
! TCCCTAAATATACTATAACA+GGG + chr3_3:86341860-86341879 None:intergenic 25.0%
! TTCCCTAAATATACTATAAC+AGG + chr3_3:86341861-86341880 None:intergenic 25.0%
! GAAAATTCCAAATGATAATC+AGG - chr3_3:86341878-86341897 Msa0480780:CDS 25.0%
!!! CTGTGAAGTTTTTTTTTTTG+TGG - chr3_3:86342503-86342522 Msa0480780:intron 25.0%
! AAAAAGATGGAAAAAAAGAC+CGG + chr3_3:86342544-86342563 None:intergenic 25.0%
! TAATTTCTTCTTATCGTTGA+TGG + chr3_3:86342767-86342786 None:intergenic 25.0%
!!! TTCTAGCTTATTGAAAACAT+TGG - chr3_3:86342852-86342871 Msa0480780:intron 25.0%
!! ATATTTTCTTTTCCAATCCA+TGG + chr3_3:86342896-86342915 None:intergenic 25.0%
! TTGGAAAAGAAAATATGAAC+AGG - chr3_3:86342900-86342919 Msa0480780:CDS 25.0%
!!! AATATGAACAGGTTTTATCA+AGG - chr3_3:86342911-86342930 Msa0480780:CDS 25.0%
!!! AGAGTTGAAGGTAATTTTTT+TGG - chr3_3:86343394-86343413 Msa0480780:intron 25.0%
!!! ATATGACAAACTCTCTTTTT+TGG - chr3_3:86343491-86343510 Msa0480780:CDS 25.0%
!!! CTTTTTTGGTGTGTTTATTT+CGG - chr3_3:86343505-86343524 Msa0480780:CDS 25.0%
!!! TTTAACTTCTTTTTTCTGTG+TGG - chr3_3:86344711-86344730 Msa0480780:CDS 25.0%
! AGCAATGATTATCATATTGT+AGG - chr3_3:86344768-86344787 Msa0480780:CDS 25.0%
!!! TAATTAAGACTGGTCTTTTA+CGG - chr3_3:86344920-86344939 Msa0480780:five_prime_UTR 25.0%
! AACAGATCAAATAGATAGAT+AGG + chr3_3:86344951-86344970 None:intergenic 25.0%
!!! TTTCGCTTTTTTTCTCTTTG+GGG + chr3_3:86335754-86335773 None:intergenic 30.0%
!!! CTTTCGCTTTTTTTCTCTTT+GGG + chr3_3:86335755-86335774 None:intergenic 30.0%
!!! ACTTTCGCTTTTTTTCTCTT+TGG + chr3_3:86335756-86335775 None:intergenic 30.0%
! CAATTTGTTTAACCGAAACA+AGG - chr3_3:86335808-86335827 Msa0480780:three_prime_UTR 30.0%
AAAAAGCTATATCTTGAACC+AGG - chr3_3:86336039-86336058 Msa0480780:three_prime_UTR 30.0%
!!! GGTTTTGAAATTTAGGGTTT+TGG - chr3_3:86336092-86336111 Msa0480780:exon 30.0%
! TTTCTTCGTAATTAGGGTTT+TGG - chr3_3:86336119-86336138 Msa0480780:CDS 30.0%
! CGGTGTATTTATTGGTAATT+AGG - chr3_3:86336379-86336398 Msa0480780:CDS 30.0%
! GTAGATTTTTGTTGGGTTTA+TGG - chr3_3:86336433-86336452 Msa0480780:CDS 30.0%
! ATCTAGTTGTTGGATTGTTT+TGG - chr3_3:86336596-86336615 Msa0480780:CDS 30.0%
! TCTAGTTGTTGGATTGTTTT+GGG - chr3_3:86336597-86336616 Msa0480780:CDS 30.0%
TATACAATTCCAACTTATCC+CGG + chr3_3:86336756-86336775 None:intergenic 30.0%
TGCTACAGTAATTATACAAG+CGG + chr3_3:86336846-86336865 None:intergenic 30.0%
! GTTACTCTGATAGTTTTTCT+AGG + chr3_3:86336891-86336910 None:intergenic 30.0%
AGGAAAATATAGGTCTTGAT+AGG + chr3_3:86337488-86337507 None:intergenic 30.0%
! ATCAAGACCTATATTTTCCT+AGG - chr3_3:86337488-86337507 Msa0480780:intron 30.0%
!!! TTGTTTTGATATTCCATGAC+CGG - chr3_3:86337532-86337551 Msa0480780:CDS 30.0%
TGATGTTTCATTTACTCAGA+TGG - chr3_3:86337638-86337657 Msa0480780:CDS 30.0%
GATGTTTCATTTACTCAGAT+GGG - chr3_3:86337639-86337658 Msa0480780:CDS 30.0%
! AGTTTTCCCCAATTTTTGTT+TGG - chr3_3:86337769-86337788 Msa0480780:CDS 30.0%
TAAGAGCCAAACAAAAATTG+GGG + chr3_3:86337778-86337797 None:intergenic 30.0%
GTAAGAGCCAAACAAAAATT+GGG + chr3_3:86337779-86337798 None:intergenic 30.0%
!!! CAATTTTTGTTTGGCTCTTA+CGG - chr3_3:86337778-86337797 Msa0480780:CDS 30.0%
!!! AATTTTTGTTTGGCTCTTAC+GGG - chr3_3:86337779-86337798 Msa0480780:CDS 30.0%
TTACGAACCATTGCAAATAT+TGG - chr3_3:86337806-86337825 Msa0480780:CDS 30.0%
GCACTATTTGTGAATAATCT+TGG - chr3_3:86337901-86337920 Msa0480780:CDS 30.0%
CTATTTGTGAATAATCTTGG+TGG - chr3_3:86337904-86337923 Msa0480780:CDS 30.0%
TACTTCAGGAATGACAAATT+AGG + chr3_3:86338061-86338080 None:intergenic 30.0%
! GACCTAGGATAATTTTGTAA+AGG - chr3_3:86338179-86338198 Msa0480780:intron 30.0%
ATGAATAAAAACCTATCCGA+GGG + chr3_3:86338219-86338238 None:intergenic 30.0%
TATGAATAAAAACCTATCCG+AGG + chr3_3:86338220-86338239 None:intergenic 30.0%
ATTAAACTAGCAGGCATAAT+GGG + chr3_3:86338250-86338269 None:intergenic 30.0%
AATTAAACTAGCAGGCATAA+TGG + chr3_3:86338251-86338270 None:intergenic 30.0%
! AGTGGCAATTTTACAGATTT+TGG + chr3_3:86338307-86338326 None:intergenic 30.0%
AAAAGTTACTCACTGATATC+TGG + chr3_3:86338614-86338633 None:intergenic 30.0%
AAAATGTCTGCAAAAGAGTA+TGG + chr3_3:86338650-86338669 None:intergenic 30.0%
!! TTTTGCTTTAAATACGCAGT+CGG - chr3_3:86338689-86338708 Msa0480780:intron 30.0%
TGAATATCTCTTCGAAATTC+AGG + chr3_3:86338726-86338745 None:intergenic 30.0%
AATGAAATGAGAAAGTCCAA+CGG + chr3_3:86339004-86339023 None:intergenic 30.0%
AACAACATTGAAGGAAATTG+TGG + chr3_3:86339121-86339140 None:intergenic 30.0%
! CTGCTATTTAACAACATTGA+AGG + chr3_3:86339130-86339149 None:intergenic 30.0%
ATCGTGGATCATGAAAAATA+TGG + chr3_3:86339270-86339289 None:intergenic 30.0%
GTGATTCAAAAGATCAATCA+AGG + chr3_3:86339350-86339369 None:intergenic 30.0%
GAACACTTGATCACATTAAA+AGG + chr3_3:86339388-86339407 None:intergenic 30.0%
AGAACCAAATTATCATGCAA+AGG - chr3_3:86339473-86339492 Msa0480780:intron 30.0%
AATGCCTTTGCATGATAATT+TGG + chr3_3:86339480-86339499 None:intergenic 30.0%
!! TTTGGCTTCTGAAGTTTATA+TGG - chr3_3:86339632-86339651 Msa0480780:intron 30.0%
AAACAGTGCAGTCAAAATTA+AGG + chr3_3:86339743-86339762 None:intergenic 30.0%
GCTTCAGAAATTCATCAAAA+AGG - chr3_3:86339872-86339891 Msa0480780:intron 30.0%
!! TTCTTTTTGTTTAGACTGCA+AGG - chr3_3:86340023-86340042 Msa0480780:intron 30.0%
!! TCTTTTTGTTTAGACTGCAA+GGG - chr3_3:86340024-86340043 Msa0480780:intron 30.0%
GATAATTGACTGTTCAAAGT+AGG - chr3_3:86340138-86340157 Msa0480780:intron 30.0%
! ACCTTTTAAACCTGAAATTG+GGG - chr3_3:86340297-86340316 Msa0480780:intron 30.0%
ATTATCCTTTGTGCCAATTT+GGG - chr3_3:86340465-86340484 Msa0480780:intron 30.0%
TGATTGAGATCATTATGGAA+TGG + chr3_3:86340648-86340667 None:intergenic 30.0%
AATCATAGTGACAAAACATC+GGG + chr3_3:86340758-86340777 None:intergenic 30.0%
CAATCATAGTGACAAAACAT+CGG + chr3_3:86340759-86340778 None:intergenic 30.0%
TGATGTTACTATGATGTGTT+TGG + chr3_3:86340931-86340950 None:intergenic 30.0%
!! TTTTTCAATCAAGGTTACAG+GGG - chr3_3:86341227-86341246 Msa0480780:intron 30.0%
ATGATATGCTATAAGCTACT+TGG - chr3_3:86341267-86341286 Msa0480780:intron 30.0%
AAAAATAAGCAATAAGCTCG+TGG - chr3_3:86341320-86341339 Msa0480780:intron 30.0%
GCCTGTATTTGAAAATGATA+TGG - chr3_3:86341519-86341538 Msa0480780:intron 30.0%
TGATGCAAAAGAAGAATTTC+TGG - chr3_3:86341800-86341819 Msa0480780:intron 30.0%
CACCCTGTTATAGTATATTT+AGG - chr3_3:86341855-86341874 Msa0480780:CDS 30.0%
!! AAATATTTGTGCCACTTTCT+TGG - chr3_3:86341969-86341988 Msa0480780:intron 30.0%
TTGAACAACAGGATTACAAA+AGG - chr3_3:86342038-86342057 Msa0480780:intron 30.0%
TTACAAAAGGAATGCATTCA+TGG - chr3_3:86342051-86342070 Msa0480780:intron 30.0%
TTCAAATGCCATACATTCTA+TGG - chr3_3:86342090-86342109 Msa0480780:CDS 30.0%
CCAACAAAATGAATGAATGA+AGG + chr3_3:86342216-86342235 None:intergenic 30.0%
! CCTTCATTCATTCATTTTGT+TGG - chr3_3:86342213-86342232 Msa0480780:intron 30.0%
CAAAGATAAAATATCCAACC+TGG + chr3_3:86342373-86342392 None:intergenic 30.0%
GAATATGAAAAGTCCATTCA+AGG - chr3_3:86342420-86342439 Msa0480780:intron 30.0%
!!! GTTTCTGTTGATAGTTTTGA+AGG - chr3_3:86342577-86342596 Msa0480780:intron 30.0%
TATCTATTACCCTCTTGAAA+AGG + chr3_3:86342615-86342634 None:intergenic 30.0%
AATATGCAAAAGAAATGGGT+GGG + chr3_3:86343227-86343246 None:intergenic 30.0%
! GACTTATTTGCTAATTATGC+AGG - chr3_3:86343304-86343323 Msa0480780:intron 30.0%
!! AACTCTGAAATTAGAGTTGA+AGG - chr3_3:86343382-86343401 Msa0480780:intron 30.0%
TGTATCATAACTCCTTATCT+TGG + chr3_3:86343576-86343595 None:intergenic 30.0%
AATGAAATCTGAAAATGCCA+AGG - chr3_3:86343640-86343659 Msa0480780:intron 30.0%
! CAAATCTTTTGAACTCAGAT+TGG + chr3_3:86343730-86343749 None:intergenic 30.0%
ATCTGAGTTCAAAAGATTTG+AGG - chr3_3:86343730-86343749 Msa0480780:intron 30.0%
TGGATAAAGATAAAACACAC+AGG - chr3_3:86344053-86344072 Msa0480780:intron 30.0%
! TCAGATTCTTGAACAACTTT+TGG - chr3_3:86344087-86344106 Msa0480780:intron 30.0%
GTTTCGAATGAATGAAACAT+TGG - chr3_3:86344219-86344238 Msa0480780:intron 30.0%
GAACTGACAAAACATAACTT+TGG - chr3_3:86344490-86344509 Msa0480780:intron 30.0%
! CAAAACATAACTTTGGTGAT+CGG - chr3_3:86344497-86344516 Msa0480780:intron 30.0%
ATTATCATATTGTAGGCCAT+AGG - chr3_3:86344775-86344794 Msa0480780:CDS 30.0%
!! TTTTGATGGCACGATTTTAT+TGG - chr3_3:86344801-86344820 Msa0480780:CDS 30.0%
ATAATGTAGCTCGTCTAATA+TGG + chr3_3:86344897-86344916 None:intergenic 30.0%
AACTGAGAAGATGAAGAAGA+TGG + chr3_3:86335878-86335897 None:intergenic 35.0%
!! TCAAGATATAGCTTTTTCCC+TGG + chr3_3:86336036-86336055 None:intergenic 35.0%
CTAGAATTCGAAAAATCACC+TGG + chr3_3:86336060-86336079 None:intergenic 35.0%
TGGTGTCTTTCTTCGTAATT+AGG - chr3_3:86336112-86336131 Msa0480780:CDS 35.0%
GGTGTCTTTCTTCGTAATTA+GGG - chr3_3:86336113-86336132 Msa0480780:CDS 35.0%
!! TTCGTAATTAGGGTTTTGGT+TGG - chr3_3:86336123-86336142 Msa0480780:CDS 35.0%
!!! TCGTAATTAGGGTTTTGGTT+GGG - chr3_3:86336124-86336143 Msa0480780:CDS 35.0%
AAAGAGCAACTTTCTGATTG+CGG + chr3_3:86336299-86336318 None:intergenic 35.0%
AAACTTGTATGCTTGTGCAT+CGG - chr3_3:86336325-86336344 Msa0480780:CDS 35.0%
!!! TGAAGTTCAGGGTTTTAGTT+TGG - chr3_3:86336351-86336370 Msa0480780:CDS 35.0%
!!! AGGGTTTTAGTTTGGATTTC+CGG - chr3_3:86336359-86336378 Msa0480780:CDS 35.0%
TGGATTTCCGGTGTATTTAT+TGG - chr3_3:86336371-86336390 Msa0480780:CDS 35.0%
CTACAATGATCACACTGAAT+GGG + chr3_3:86336417-86336436 None:intergenic 35.0%
TCTACAATGATCACACTGAA+TGG + chr3_3:86336418-86336437 None:intergenic 35.0%
!! TTTTGGGAGTAATGTGTGTT+AGG - chr3_3:86336502-86336521 Msa0480780:CDS 35.0%
AAGCAAACGAATCTAGTTGT+TGG - chr3_3:86336586-86336605 Msa0480780:CDS 35.0%
AAAAAACCACATACTCGTTG+TGG + chr3_3:86336644-86336663 None:intergenic 35.0%
AATTTAACTGCGAAGTTCAG+TGG - chr3_3:86336723-86336742 Msa0480780:CDS 35.0%
TTACTGTAGCAAGTTACTAG+AGG - chr3_3:86336855-86336874 Msa0480780:CDS 35.0%
AACAACAAAAAGCAGCAACA+AGG + chr3_3:86337070-86337089 None:intergenic 35.0%
CTTCTACTATTAGACAGTGA+AGG - chr3_3:86337246-86337265 Msa0480780:intron 35.0%
TAGCATGTTCATTTACAACC+AGG - chr3_3:86337453-86337472 Msa0480780:intron 35.0%
ATGTTCATTTACAACCAGGT+TGG - chr3_3:86337457-86337476 Msa0480780:intron 35.0%
TTTGAGTGACTAGAGAAAGA+CGG + chr3_3:86337689-86337708 None:intergenic 35.0%
CGTAAGAGCCAAACAAAAAT+TGG + chr3_3:86337780-86337799 None:intergenic 35.0%
CTGTCTTCCAATATTTGCAA+TGG + chr3_3:86337816-86337835 None:intergenic 35.0%
TGCAAATATTGGAAGACAGT+AGG - chr3_3:86337817-86337836 Msa0480780:CDS 35.0%
!! AAGCAAGTTCTAGATAGTCT+CGG + chr3_3:86337977-86337996 None:intergenic 35.0%
! ACTATCTAGAACTTGCTTTG+CGG - chr3_3:86337979-86337998 Msa0480780:CDS 35.0%
TGTCATTCCTGAAGTAATTG+AGG - chr3_3:86338065-86338084 Msa0480780:CDS 35.0%
TCAGAACATAGGAGTTAGAA+TGG - chr3_3:86338126-86338145 Msa0480780:intron 35.0%
!!! TGTAGTGTCAGTTTTGGTTT+AGG + chr3_3:86338282-86338301 None:intergenic 35.0%
! GTAAAATTGCCACTTGAATC+TGG - chr3_3:86338313-86338332 Msa0480780:intron 35.0%
!! AAGAGTATTCCAGATTCAAG+TGG + chr3_3:86338325-86338344 None:intergenic 35.0%
ATTGTTTAAAGGCCGTACAA+GGG + chr3_3:86338568-86338587 None:intergenic 35.0%
GAGTGCATCAAGATAAGATT+CGG + chr3_3:86338835-86338854 None:intergenic 35.0%
!!! TGTTTTAAAACTAACCTGCC+AGG + chr3_3:86338889-86338908 None:intergenic 35.0%
!!! TCGTCACTGATTCACTTTTA+AGG + chr3_3:86338963-86338982 None:intergenic 35.0%
AAAAGTGAATCAGTGACGAA+TGG - chr3_3:86338964-86338983 Msa0480780:intron 35.0%
!!! GGATGTTATATTTTGACCGT+TGG - chr3_3:86338985-86339004 Msa0480780:intron 35.0%
TAAAGAACTTCCTCCAATTG+CGG + chr3_3:86339326-86339345 None:intergenic 35.0%
!! GGCTTTAGTTTGCTCAATAT+TGG - chr3_3:86339552-86339571 Msa0480780:intron 35.0%
!! TTTTGACTGCACTGTTTTGT+AGG - chr3_3:86339746-86339765 Msa0480780:intron 35.0%
ACAAGCAGTTCATAAGTCAA+TGG - chr3_3:86339791-86339810 Msa0480780:intron 35.0%
ATTCATCAAAAAGGCTTTCG+AGG - chr3_3:86339881-86339900 Msa0480780:intron 35.0%
!! CTTTTTGTTTAGACTGCAAG+GGG - chr3_3:86340025-86340044 Msa0480780:intron 35.0%
GAGCAAAAAATAAGCGTGTT+TGG - chr3_3:86340166-86340185 Msa0480780:intron 35.0%
!! TCCCCAATTTCAGGTTTAAA+AGG + chr3_3:86340301-86340320 None:intergenic 35.0%
GATTATCCTTTGTGCCAATT+TGG - chr3_3:86340464-86340483 Msa0480780:intron 35.0%
TGGGACTCAAAAATGCAATT+CGG + chr3_3:86340701-86340720 None:intergenic 35.0%
! CGATGTTTTGTCACTATGAT+TGG - chr3_3:86340757-86340776 Msa0480780:intron 35.0%
! TGTTTTGTCACTATGATTGG+TGG - chr3_3:86340760-86340779 Msa0480780:intron 35.0%
AATTCTCTCAACAGAACTAG+AGG + chr3_3:86340986-86341005 None:intergenic 35.0%
AACAGACATGTAAACTACTC+AGG - chr3_3:86341026-86341045 Msa0480780:CDS 35.0%
ACAGACATGTAAACTACTCA+GGG - chr3_3:86341027-86341046 Msa0480780:CDS 35.0%
AGGGACATCTTGAATTTCTT+TGG - chr3_3:86341046-86341065 Msa0480780:CDS 35.0%
GCTGATAAGCTAACTTATAG+TGG - chr3_3:86341085-86341104 Msa0480780:intron 35.0%
!! TTATAGTGGATAGCTGATAG+CGG - chr3_3:86341099-86341118 Msa0480780:intron 35.0%
CTGATTGAATTTGCAGTGTT+TGG - chr3_3:86341131-86341150 Msa0480780:intron 35.0%
! TTTTGCATAAGGGGTCTATT+TGG + chr3_3:86341434-86341453 None:intergenic 35.0%
TGGAGTGATTATTATGGCAA+AGG - chr3_3:86341473-86341492 Msa0480780:intron 35.0%
TTATGGCAAAGGATATAAGC+AGG - chr3_3:86341484-86341503 Msa0480780:intron 35.0%
TATGGCAAAGGATATAAGCA+GGG - chr3_3:86341485-86341504 Msa0480780:intron 35.0%
!! TGGTTTGCTGTTTGTTACTT+TGG - chr3_3:86341539-86341558 Msa0480780:intron 35.0%
!! CTGTTTGTTACTTTGGAAGA+TGG - chr3_3:86341546-86341565 Msa0480780:intron 35.0%
!! TGTTACTTTGGAAGATGGTA+TGG - chr3_3:86341551-86341570 Msa0480780:intron 35.0%
CATTTCAAATGAGACATAGG+AGG - chr3_3:86341579-86341598 Msa0480780:intron 35.0%
GAGACATAGGAGGTAAATTA+AGG - chr3_3:86341589-86341608 Msa0480780:intron 35.0%
ACAGAAGGACTATTGATGAA+TGG + chr3_3:86341634-86341653 None:intergenic 35.0%
ATCAATAGTCCTTCTGTTTC+TGG - chr3_3:86341637-86341656 Msa0480780:intron 35.0%
TTTGGAGGTTATGATGTGAA+TGG - chr3_3:86341664-86341683 Msa0480780:intron 35.0%
TAATTCTGGCAAACATCATG+TGG - chr3_3:86341761-86341780 Msa0480780:intron 35.0%
!! TGGCTTTAACAAACCTAACT+TGG - chr3_3:86341820-86341839 Msa0480780:CDS 35.0%
! CCTCTTTTCCATAGAATGTA+TGG + chr3_3:86342101-86342120 None:intergenic 35.0%
CCATACATTCTATGGAAAAG+AGG - chr3_3:86342098-86342117 Msa0480780:CDS 35.0%
TTGTAATGCTTCTGATGCTA+GGG - chr3_3:86342132-86342151 Msa0480780:CDS 35.0%
!! TAGGGTTGATAATGTTGCAA+AGG - chr3_3:86342150-86342169 Msa0480780:CDS 35.0%
! TATCTTGTTTGAAACCCGAA+AGG - chr3_3:86342247-86342266 Msa0480780:intron 35.0%
! ATCTTGTTTGAAACCCGAAA+GGG - chr3_3:86342248-86342267 Msa0480780:intron 35.0%
!!! TCTTGTTTTCTTTCCCCTTT+CGG + chr3_3:86342265-86342284 None:intergenic 35.0%
! GGATATTTTATCTTTGACGC+AGG - chr3_3:86342377-86342396 Msa0480780:intron 35.0%
!!! GCAAGTTTTTTCCATTTTCC+AGG + chr3_3:86342447-86342466 None:intergenic 35.0%
!!! TTTTTTGTGGTTGAGAGTAG+TGG - chr3_3:86342516-86342535 Msa0480780:intron 35.0%
! TAGCTTGCAATTCAGTAATG+CGG + chr3_3:86342807-86342826 None:intergenic 35.0%
CAATATGCAAAAGAAATGGG+TGG + chr3_3:86343228-86343247 None:intergenic 35.0%
CCAAGTTTGCAAGGAATTAT+GGG + chr3_3:86343279-86343298 None:intergenic 35.0%
CCATAATTCCTTGCAAACTT+GGG - chr3_3:86343277-86343296 Msa0480780:intron 35.0%
! TGTTTATTTCGGTCTTTTCG+AGG - chr3_3:86343516-86343535 Msa0480780:CDS 35.0%
AATATTGTGCTTGTACTTGC+AGG - chr3_3:86343541-86343560 Msa0480780:CDS 35.0%
ATACAGAAATATCGTCACTG+AGG - chr3_3:86343591-86343610 Msa0480780:intron 35.0%
TGAGTTCAAAAGATTTGAGG+AGG - chr3_3:86343733-86343752 Msa0480780:intron 35.0%
! GAGAATTGAAACTCTAGGAA+GGG - chr3_3:86343910-86343929 Msa0480780:intron 35.0%
! TTGATGTAGGGAGTCAATTT+TGG + chr3_3:86344188-86344207 None:intergenic 35.0%
! ATGCAAGCCCTAGATTTTTA+AGG - chr3_3:86344320-86344339 Msa0480780:intron 35.0%
! TGCAAGCCCTAGATTTTTAA+GGG - chr3_3:86344321-86344340 Msa0480780:intron 35.0%
TAGCTCCCCTTAAAAATCTA+GGG + chr3_3:86344330-86344349 None:intergenic 35.0%
TTAGCTCCCCTTAAAAATCT+AGG + chr3_3:86344331-86344350 None:intergenic 35.0%
CTTTGTATGATCCTCTTCAT+TGG + chr3_3:86344446-86344465 None:intergenic 35.0%
GCAACAAGATCTTTCTTCAT+GGG + chr3_3:86344541-86344560 None:intergenic 35.0%
AGCAACAAGATCTTTCTTCA+TGG + chr3_3:86344542-86344561 None:intergenic 35.0%
ATGAGGAATGTATTCTTCAG+AGG - chr3_3:86344566-86344585 Msa0480780:intron 35.0%
!! TTCTGTGTGGTTTTGCATAT+TGG - chr3_3:86344724-86344743 Msa0480780:CDS 35.0%
TCTTCATCTTCTCAGTTCAC+CGG - chr3_3:86335881-86335900 Msa0480780:three_prime_UTR 40.0%
CTTGTCTACTGCGATGAAAA+GGG - chr3_3:86335923-86335942 Msa0480780:three_prime_UTR 40.0%
TGAAAAGGGAAAGTTCCGTA+TGG - chr3_3:86335937-86335956 Msa0480780:three_prime_UTR 40.0%
!!! TAGGGTTTTGGTTGGGATTA+TGG - chr3_3:86336131-86336150 Msa0480780:CDS 40.0%
GCAATCAGAAAGTTGCTCTT+TGG - chr3_3:86336298-86336317 Msa0480780:CDS 40.0%
!!! TGCATCGGTTTTGAAGTTCA+GGG - chr3_3:86336340-86336359 Msa0480780:CDS 40.0%
GAAGTTCAGTGGCTAATTTC+CGG - chr3_3:86336734-86336753 Msa0480780:CDS 40.0%
AAGTTCAGTGGCTAATTTCC+GGG - chr3_3:86336735-86336754 Msa0480780:CDS 40.0%
!!! TTTTTTGCACTGCAGCTCTT+AGG - chr3_3:86337114-86337133 Msa0480780:intron 40.0%
AACAGCCAGTGAGAATATCT+GGG + chr3_3:86337425-86337444 None:intergenic 40.0%
!! ATATTCCATGACCGGTTTGT+GGG - chr3_3:86337540-86337559 Msa0480780:CDS 40.0%
GTTTCATTTACTCAGATGGG+TGG - chr3_3:86337642-86337661 Msa0480780:CDS 40.0%
CATATTCGTGTTAGAGCTTC+TGG - chr3_3:86337717-86337736 Msa0480780:CDS 40.0%
AAACTGTCCTATTTCAGACG+CGG + chr3_3:86337754-86337773 None:intergenic 40.0%
! TTGTGAATAATCTTGGTGGC+AGG - chr3_3:86337908-86337927 Msa0480780:CDS 40.0%
!! AGCAAGTTCTAGATAGTCTC+GGG + chr3_3:86337976-86337995 None:intergenic 40.0%
CGATGTAGCTGCTAAAAATG+AGG - chr3_3:86338022-86338041 Msa0480780:CDS 40.0%
CATAGGAGTTAGAATGGCAT+AGG - chr3_3:86338132-86338151 Msa0480780:intron 40.0%
GGATGCGAATAATAATCCCT+CGG - chr3_3:86338200-86338219 Msa0480780:intron 40.0%
CGAATAATAATCCCTCGGAT+AGG - chr3_3:86338205-86338224 Msa0480780:intron 40.0%
! TTGGTGTGTAGTGTCAGTTT+TGG + chr3_3:86338288-86338307 None:intergenic 40.0%
AGAAAGTTAGCAACTCCAGA+GGG + chr3_3:86338481-86338500 None:intergenic 40.0%
CATTGTTTAAAGGCCGTACA+AGG + chr3_3:86338569-86338588 None:intergenic 40.0%
TGAAAATGATCTACAGCGAC+TGG - chr3_3:86338587-86338606 Msa0480780:CDS 40.0%
! CTGCAAAAGAGTATGGTACA+TGG + chr3_3:86338643-86338662 None:intergenic 40.0%
! ATAGTTGCTCCAACTTGCTT+TGG + chr3_3:86338783-86338802 None:intergenic 40.0%
! ATGACAGGTCCTGTATTGAT+TGG - chr3_3:86338804-86338823 Msa0480780:intron 40.0%
TCGGTGATACCAATCAATAC+AGG + chr3_3:86338816-86338835 None:intergenic 40.0%
TATCTTGATGCACTCAACCA+TGG - chr3_3:86338840-86338859 Msa0480780:intron 40.0%
! TTTAAAACTAACCTGCCAGG+AGG + chr3_3:86338886-86338905 None:intergenic 40.0%
!! TACGAAGCACTGTCAAATTG+TGG - chr3_3:86339205-86339224 Msa0480780:intron 40.0%
CGGACTAAATATCCACATCA+AGG + chr3_3:86339306-86339325 None:intergenic 40.0%
GTGGATATTTAGTCCGCAAT+TGG - chr3_3:86339310-86339329 Msa0480780:intron 40.0%
GATATTTAGTCCGCAATTGG+AGG - chr3_3:86339313-86339332 Msa0480780:intron 40.0%
! ACATTTTTCGTTCCGAACTC+TGG + chr3_3:86339518-86339537 None:intergenic 40.0%
AAGCCAAATCATAAGCCCTA+CGG + chr3_3:86339620-86339639 None:intergenic 40.0%
GATAGATTACTCACTTCCTC+AGG + chr3_3:86339681-86339700 None:intergenic 40.0%
!! TGTTTTGTAGGTCGCTTTGA+TGG - chr3_3:86339758-86339777 Msa0480780:intron 40.0%
! GCTTTTAATGCTAGTGCTGT+AGG - chr3_3:86339816-86339835 Msa0480780:intron 40.0%
GCAGCTAGGAAGAAATATGA+AGG - chr3_3:86339846-86339865 Msa0480780:intron 40.0%
TGAGAGATGGAAGTTTGACA+GGG + chr3_3:86340362-86340381 None:intergenic 40.0%
ATGAGAGATGGAAGTTTGAC+AGG + chr3_3:86340363-86340382 None:intergenic 40.0%
CGTCTATCTATCATGAGAGA+TGG + chr3_3:86340375-86340394 None:intergenic 40.0%
TAATCAAACCTGAGACCTTG+AGG + chr3_3:86340449-86340468 None:intergenic 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr3_3:86340481-86340500 None:intergenic 40.0%
GAATGGCTACAGAAGGAAAT+AGG + chr3_3:86340631-86340650 None:intergenic 40.0%
CATTATGGAATGGCTACAGA+AGG + chr3_3:86340638-86340657 None:intergenic 40.0%
GGGACTCAAAAATGCAATTC+GGG + chr3_3:86340700-86340719 None:intergenic 40.0%
CTTGACAAAGTCACTCAGTT+GGG + chr3_3:86340720-86340739 None:intergenic 40.0%
ACTTGACAAAGTCACTCAGT+TGG + chr3_3:86340721-86340740 None:intergenic 40.0%
! GTGACTTTGTCAAGTTTGCT+TGG - chr3_3:86340726-86340745 Msa0480780:intron 40.0%
! TTTTCTCTGATCACTCAGAG+TGG - chr3_3:86340804-86340823 Msa0480780:CDS 40.0%
TTTCTCTGATCACTCAGAGT+GGG - chr3_3:86340805-86340824 Msa0480780:CDS 40.0%
TTGACTAAAAAGGTCCCGTT+TGG + chr3_3:86341360-86341379 None:intergenic 40.0%
ATGGCAAAGGATATAAGCAG+GGG - chr3_3:86341486-86341505 Msa0480780:intron 40.0%
CCAAATATGCCAGAAACAGA+AGG + chr3_3:86341649-86341668 None:intergenic 40.0%
!! CCTTCTGTTTCTGGCATATT+TGG - chr3_3:86341646-86341665 Msa0480780:intron 40.0%
!! TCTGTTTCTGGCATATTTGG+AGG - chr3_3:86341649-86341668 Msa0480780:intron 40.0%
GTAAGCACAAAAGCCAAGTT+AGG + chr3_3:86341836-86341855 None:intergenic 40.0%
CACACACCCTGATTATCATT+TGG + chr3_3:86341888-86341907 None:intergenic 40.0%
CAAAAGGAATGCATTCATGG+AGG - chr3_3:86342054-86342073 Msa0480780:intron 40.0%
ATTCTATGGAAAAGAGGCTG+AGG - chr3_3:86342104-86342123 Msa0480780:CDS 40.0%
TTCTATGGAAAAGAGGCTGA+GGG - chr3_3:86342105-86342124 Msa0480780:CDS 40.0%
CTTGTAATGCTTCTGATGCT+AGG - chr3_3:86342131-86342150 Msa0480780:CDS 40.0%
! TCTTGTTTGAAACCCGAAAG+GGG - chr3_3:86342249-86342268 Msa0480780:intron 40.0%
!! CTTGTTTTCTTTCCCCTTTC+GGG + chr3_3:86342264-86342283 None:intergenic 40.0%
AAGGGGAAAGAAAACAAGAG+AGG - chr3_3:86342266-86342285 Msa0480780:intron 40.0%
TCTTGAAAAGGTCAAGCACA+GGG + chr3_3:86342603-86342622 None:intergenic 40.0%
!! TGTGCTTGACCTTTTCAAGA+GGG - chr3_3:86342603-86342622 Msa0480780:intron 40.0%
TTCATTCAACCGACGTTGTA+AGG + chr3_3:86342665-86342684 None:intergenic 40.0%
CTCATATCGCTTGATGTACT+CGG + chr3_3:86342740-86342759 None:intergenic 40.0%
AACATTGGACTCTAGTAAGC+AGG - chr3_3:86342867-86342886 Msa0480780:intron 40.0%
TTTATCAAGGCAGAAAGCTG+AGG - chr3_3:86342924-86342943 Msa0480780:CDS 40.0%
!! AGCAAAATCTGCTCTAGAGA+AGG - chr3_3:86343092-86343111 Msa0480780:intron 40.0%
AAACAAGCAGACACAGTTGA+GGG - chr3_3:86343137-86343156 Msa0480780:intron 40.0%
GTCTTAAGAGAAGAGTTCTC+TGG - chr3_3:86343165-86343184 Msa0480780:intron 40.0%
!! AGAAGAGTTCTCTGGAACTT+TGG - chr3_3:86343173-86343192 Msa0480780:intron 40.0%
AAAAGAAATGGGTGGGTATC+AGG + chr3_3:86343220-86343239 None:intergenic 40.0%
CCCATAATTCCTTGCAAACT+TGG - chr3_3:86343276-86343295 Msa0480780:intron 40.0%
CCCAAGTTTGCAAGGAATTA+TGG + chr3_3:86343280-86343299 None:intergenic 40.0%
!! GCTTCTTAGAAGTGTTGTCT+CGG - chr3_3:86343416-86343435 Msa0480780:CDS 40.0%
TTGTCTCGGCACTATTATGA+AGG - chr3_3:86343430-86343449 Msa0480780:CDS 40.0%
TGTCTCGGCACTATTATGAA+GGG - chr3_3:86343431-86343450 Msa0480780:CDS 40.0%
GGAAGCAATAGTATATCAGC+AGG - chr3_3:86343679-86343698 Msa0480780:intron 40.0%
ATTGGTACTTCTGCTCAAGA+TGG + chr3_3:86343712-86343731 None:intergenic 40.0%
GATTTGAGGAGGTTCAAGAA+AGG - chr3_3:86343744-86343763 Msa0480780:intron 40.0%
TGCTGAAAAAGAAGCTGCAA+GGG - chr3_3:86343775-86343794 Msa0480780:intron 40.0%
GAGAGGAGAATTGAAACTCT+AGG - chr3_3:86343905-86343924 Msa0480780:intron 40.0%
! GGAGAATTGAAACTCTAGGA+AGG - chr3_3:86343909-86343928 Msa0480780:intron 40.0%
AGGAAGGGAGAAAGATAATC+TGG - chr3_3:86343925-86343944 Msa0480780:intron 40.0%
AGGGAGAAAGATAATCTGGA+AGG - chr3_3:86343929-86343948 Msa0480780:intron 40.0%
!! GAAGGATTTAGAAGCACTTC+TGG - chr3_3:86344033-86344052 Msa0480780:intron 40.0%
CACATACACAGGCAAATAAC+CGG - chr3_3:86344125-86344144 Msa0480780:intron 40.0%
ACATACACAGGCAAATAACC+GGG - chr3_3:86344126-86344145 Msa0480780:intron 40.0%
CTTAGTCAGCTCTTGATGTA+GGG + chr3_3:86344200-86344219 None:intergenic 40.0%
ACTTAGTCAGCTCTTGATGT+AGG + chr3_3:86344201-86344220 None:intergenic 40.0%
AGTAAGCTAAAGACAACCGA+TGG - chr3_3:86344244-86344263 Msa0480780:intron 40.0%
!! TGCTGATTCTGTACAAGACA+TGG - chr3_3:86344297-86344316 Msa0480780:intron 40.0%
!! GCAAGCCCTAGATTTTTAAG+GGG - chr3_3:86344322-86344341 Msa0480780:intron 40.0%
TAGATTGAACCACCATCTTC+TGG + chr3_3:86344391-86344410 None:intergenic 40.0%
! AGATGGTGGTTCAATCTATG+AGG - chr3_3:86344393-86344412 Msa0480780:intron 40.0%
! GATGGTGGTTCAATCTATGA+GGG - chr3_3:86344394-86344413 Msa0480780:intron 40.0%
AGATCTTGTTGCTCTGTATG+AGG - chr3_3:86344549-86344568 Msa0480780:intron 40.0%
GTATTCTTCAGAGGTGATGA+CGG - chr3_3:86344575-86344594 Msa0480780:intron 40.0%
TATTCTTCAGAGGTGATGAC+GGG - chr3_3:86344576-86344595 Msa0480780:intron 40.0%
!! TAGGCCATAGGAAGTTTTGA+TGG - chr3_3:86344787-86344806 Msa0480780:CDS 40.0%
TAGACAAGGCGAATAGCTCT+CGG + chr3_3:86335911-86335930 None:intergenic 45.0%
! CCTTTTCATCGCAGTAGACA+AGG + chr3_3:86335925-86335944 None:intergenic 45.0%
CCTTGTCTACTGCGATGAAA+AGG - chr3_3:86335922-86335941 Msa0480780:three_prime_UTR 45.0%
! GACGAGTTGAAGAATAGCGA+CGG + chr3_3:86335972-86335991 None:intergenic 45.0%
CGCTATTCTTCAACTCGTCA+AGG - chr3_3:86335973-86335992 Msa0480780:three_prime_UTR 45.0%
CAAACAGAAACGACACCGAT+GGG + chr3_3:86336001-86336020 None:intergenic 45.0%
ACAAACAGAAACGACACCGA+TGG + chr3_3:86336002-86336021 None:intergenic 45.0%
!! ATCGGTGTCGTTTCTGTTTG+TGG - chr3_3:86336001-86336020 Msa0480780:three_prime_UTR 45.0%
!!! GTGCATCGGTTTTGAAGTTC+AGG - chr3_3:86336339-86336358 Msa0480780:CDS 45.0%
GTTTGACCACAACGAGTATG+TGG - chr3_3:86336635-86336654 Msa0480780:CDS 45.0%
GGCTAATTTCCGGGATAAGT+TGG - chr3_3:86336744-86336763 Msa0480780:CDS 45.0%
ATCCAAAGCCCTTTGGTACA+GGG + chr3_3:86337177-86337196 None:intergenic 45.0%
GAACAGCCAGTGAGAATATC+TGG + chr3_3:86337426-86337445 None:intergenic 45.0%
!! GATATTCCATGACCGGTTTG+TGG - chr3_3:86337539-86337558 Msa0480780:CDS 45.0%
TCAACAACAGACCCACAAAC+CGG + chr3_3:86337554-86337573 None:intergenic 45.0%
TCAGATGGGTGGTATAGATG+AGG - chr3_3:86337653-86337672 Msa0480780:CDS 45.0%
! AAGACTTCCGCGTCTGAAAT+AGG - chr3_3:86337744-86337763 Msa0480780:CDS 45.0%
!! TTTGTTTGGCTCTTACGGGT+AGG - chr3_3:86337783-86337802 Msa0480780:CDS 45.0%
! TTGGTGGCAGGACTTCTATT+TGG - chr3_3:86337920-86337939 Msa0480780:CDS 45.0%
!! GCAAGTTCTAGATAGTCTCG+GGG + chr3_3:86337975-86337994 None:intergenic 45.0%
TTGCTTTGCGGTCTGTTCAA+GGG - chr3_3:86337991-86338010 Msa0480780:CDS 45.0%
AGTTAGAATGGCATAGGCAC+AGG - chr3_3:86338138-86338157 Msa0480780:intron 45.0%
ACATATGTAGCAGACGACCT+AGG - chr3_3:86338164-86338183 Msa0480780:intron 45.0%
TGTGAAGCTTATTTCCCCTC+TGG - chr3_3:86338463-86338482 Msa0480780:intron 45.0%
GAAAGTTAGCAACTCCAGAG+GGG + chr3_3:86338480-86338499 None:intergenic 45.0%
CAGAAAGTTAGCAACTCCAG+AGG + chr3_3:86338482-86338501 None:intergenic 45.0%
ATCTGGGAATAGAGCACGAA+TGG + chr3_3:86338532-86338551 None:intergenic 45.0%
TTCGTGCTCTATTCCCAGAT+AGG - chr3_3:86338532-86338551 Msa0480780:CDS 45.0%
TCGTGCTCTATTCCCAGATA+GGG - chr3_3:86338533-86338552 Msa0480780:CDS 45.0%
AGAACAAGGCCAAAGCAAGT+TGG - chr3_3:86338771-86338790 Msa0480780:intron 45.0%
GTTGGAGCAACTATGATGAC+AGG - chr3_3:86338789-86338808 Msa0480780:intron 45.0%
GGAGGAAGAAATAGTAGGCA+CGG + chr3_3:86338868-86338887 None:intergenic 45.0%
! TGCCTACTATTTCTTCCTCC+TGG - chr3_3:86338868-86338887 Msa0480780:intron 45.0%
TGCCAGGAGGAAGAAATAGT+AGG + chr3_3:86338873-86338892 None:intergenic 45.0%
! TACTATTTCTTCCTCCTGGC+AGG - chr3_3:86338872-86338891 Msa0480780:intron 45.0%
CATGATCCACGATTGACAAC+TGG - chr3_3:86339277-86339296 Msa0480780:intron 45.0%
AGGAAACCAGTTGTCAATCG+TGG + chr3_3:86339286-86339305 None:intergenic 45.0%
! GACAACTGGTTTCCTTGATG+TGG - chr3_3:86339291-86339310 Msa0480780:intron 45.0%
AGATTACTCACTTCCTCAGG+TGG + chr3_3:86339678-86339697 None:intergenic 45.0%
AATGCTAGTGCTGTAGGAGT+TGG - chr3_3:86339822-86339841 Msa0480780:intron 45.0%
TTGTTTAGACTGCAAGGGGT+TGG - chr3_3:86340029-86340048 Msa0480780:intron 45.0%
GAGAGATGGAAGTTTGACAG+GGG + chr3_3:86340361-86340380 None:intergenic 45.0%
CATGATAGATAGACGCCACT+TGG - chr3_3:86340380-86340399 Msa0480780:intron 45.0%
ATCCTTTGTGCCAATTTGGG+TGG - chr3_3:86340468-86340487 Msa0480780:intron 45.0%
TCCTTTGTGCCAATTTGGGT+GGG - chr3_3:86340469-86340488 Msa0480780:intron 45.0%
!! TTTCTGCCGCTTGTTATCAG+CGG + chr3_3:86340567-86340586 None:intergenic 45.0%
TTCTCTGATCACTCAGAGTG+GGG - chr3_3:86340806-86340825 Msa0480780:CDS 45.0%
TGGCAAAGGATATAAGCAGG+GGG - chr3_3:86341487-86341506 Msa0480780:intron 45.0%
! TATAAGCAGGGGGGTTTTAC+TGG - chr3_3:86341497-86341516 Msa0480780:intron 45.0%
ACCTGGTCGTCAATTCAACA+AGG + chr3_3:86342356-86342375 None:intergenic 45.0%
TGTTGAATTGACGACCAGGT+TGG - chr3_3:86342356-86342375 Msa0480780:intron 45.0%
GAAAAGTCCATTCAAGGTCC+TGG - chr3_3:86342426-86342445 Msa0480780:intron 45.0%
! CCATTTTCCAGGACCTTGAA+TGG + chr3_3:86342436-86342455 None:intergenic 45.0%
CCATTCAAGGTCCTGGAAAA+TGG - chr3_3:86342433-86342452 Msa0480780:intron 45.0%
TTGCTGTCTTCTTGCAGCAA+AGG - chr3_3:86342463-86342482 Msa0480780:intron 45.0%
CTCTTGAAAAGGTCAAGCAC+AGG + chr3_3:86342604-86342623 None:intergenic 45.0%
!! CTGTGCTTGACCTTTTCAAG+AGG - chr3_3:86342602-86342621 Msa0480780:intron 45.0%
GTTCTCTTGCCTTACAACGT+CGG - chr3_3:86342653-86342672 Msa0480780:CDS 45.0%
AGATGACCTTACTGACCAAG+CGG - chr3_3:86342689-86342708 Msa0480780:CDS 45.0%
CGAGTACATCAAGCGATATG+AGG - chr3_3:86342738-86342757 Msa0480780:CDS 45.0%
CTCTAGTAAGCAGGAATCCA+TGG - chr3_3:86342876-86342895 Msa0480780:intron 45.0%
GTAAGCAGGAATCCATGGAT+TGG - chr3_3:86342881-86342900 Msa0480780:intron 45.0%
AGAGAAGGCAGCAATTGTTC+AGG - chr3_3:86343107-86343126 Msa0480780:intron 45.0%
CAAACAAGCAGACACAGTTG+AGG - chr3_3:86343136-86343155 Msa0480780:intron 45.0%
AGTCAGAACCCAAGTTTGCA+AGG + chr3_3:86343288-86343307 None:intergenic 45.0%
TGCTTCCCTCTCATATGACT+GGG + chr3_3:86343666-86343685 None:intergenic 45.0%
TTGCTTCCCTCTCATATGAC+TGG + chr3_3:86343667-86343686 None:intergenic 45.0%
CTGCTGAAAAAGAAGCTGCA+AGG - chr3_3:86343774-86343793 Msa0480780:intron 45.0%
AAAGACTGGCACAGATTGAG+AGG - chr3_3:86343879-86343898 Msa0480780:intron 45.0%
AAGACTGGCACAGATTGAGA+GGG - chr3_3:86343880-86343899 Msa0480780:intron 45.0%
AGGTGAATTGCAGAGAGCAA+CGG - chr3_3:86343949-86343968 Msa0480780:intron 45.0%
! GAAGGTGCAACAAAGAGAGA+AGG - chr3_3:86344015-86344034 Msa0480780:intron 45.0%
!! ACTTTTGGAAACAGAGCGTG+AGG - chr3_3:86344102-86344121 Msa0480780:intron 45.0%
AACCGATGGTAAGCGATTGA+GGG - chr3_3:86344258-86344277 Msa0480780:intron 45.0%
TTGAGGGCAGAGAATGACAA+TGG - chr3_3:86344274-86344293 Msa0480780:intron 45.0%
! TCTTCTGGCTGTGTGTACTT+AGG + chr3_3:86344376-86344395 None:intergenic 45.0%
AAGTACACACAGCCAGAAGA+TGG - chr3_3:86344376-86344395 Msa0480780:intron 45.0%
! TTCAATCTATGAGGGTGCAG+AGG - chr3_3:86344402-86344421 Msa0480780:intron 45.0%
TAGTCAGCAAGCCAATGAAG+AGG - chr3_3:86344432-86344451 Msa0480780:intron 45.0%
TCAGTTCTCGCTTAAGCTTC+GGG + chr3_3:86344477-86344496 None:intergenic 45.0%
GTCAGTTCTCGCTTAAGCTT+CGG + chr3_3:86344478-86344497 None:intergenic 45.0%
! ATTCTTCAGAGGTGATGACG+GGG - chr3_3:86344577-86344596 Msa0480780:intron 45.0%
!!! TGATGACGGGGGTTTTGAAA+AGG - chr3_3:86344589-86344608 Msa0480780:intron 45.0%
CGGAGTGATAAAGAAGCAAC+AGG + chr3_3:86344625-86344644 None:intergenic 45.0%
GCTTCTTTATCACTCCGTCT+AGG - chr3_3:86344628-86344647 Msa0480780:intron 45.0%
GAGATCTAGACAGACCTAGA+CGG + chr3_3:86344645-86344664 None:intergenic 45.0%
TCTAGATCTCATTGATGCCG+TGG - chr3_3:86344655-86344674 Msa0480780:CDS 45.0%
ATGCCGTGGTTACTGACATA+CGG - chr3_3:86344669-86344688 Msa0480780:CDS 45.0%
AGTCCGTATGTCAGTAACCA+CGG + chr3_3:86344675-86344694 None:intergenic 45.0%
CGTGCCATCAAAACTTCCTA+TGG + chr3_3:86344794-86344813 None:intergenic 45.0%
!! ATAATAAATGTTAAAATATT+AGG - chr3_3:86338091-86338110 Msa0480780:intron 5.0%
TGAAGAATAGCGACGGCTTC+TGG + chr3_3:86335965-86335984 None:intergenic 50.0%
CAACTCGTCAAGGAACCCAT+CGG - chr3_3:86335983-86336002 Msa0480780:three_prime_UTR 50.0%
! TAGGCCTTATCCCACTAAGC+GGG + chr3_3:86337000-86337019 None:intergenic 50.0%
! CTAGGCCTTATCCCACTAAG+CGG + chr3_3:86337001-86337020 None:intergenic 50.0%
ACACATCGACCCTGTACCAA+AGG - chr3_3:86337165-86337184 Msa0480780:intron 50.0%
CACATCGACCCTGTACCAAA+GGG - chr3_3:86337166-86337185 Msa0480780:intron 50.0%
CATCCAAAGCCCTTTGGTAC+AGG + chr3_3:86337178-86337197 None:intergenic 50.0%
!! GTACCAAAGGGCTTTGGATG+TGG - chr3_3:86337178-86337197 Msa0480780:intron 50.0%
TCAAGTGCGGTCCTCTTCAA+AGG + chr3_3:86337210-86337229 None:intergenic 50.0%
TTGAAGAGGACCGCACTTGA+TGG - chr3_3:86337210-86337229 Msa0480780:intron 50.0%
GTACTCCGTTCCATCAAGTG+CGG + chr3_3:86337223-86337242 None:intergenic 50.0%
CAGCACCCAGATATTCTCAC+TGG - chr3_3:86337417-86337436 Msa0480780:intron 50.0%
CTTGATAGGATGTGCCAACC+TGG + chr3_3:86337474-86337493 None:intergenic 50.0%
CTTGCTTTGCGGTCTGTTCA+AGG - chr3_3:86337990-86338009 Msa0480780:CDS 50.0%
! GGGTGAAGCATTCCCTATCT+GGG + chr3_3:86338548-86338567 None:intergenic 50.0%
! AGGGTGAAGCATTCCCTATC+TGG + chr3_3:86338549-86338568 None:intergenic 50.0%
GGGAATGCTTCACCCTTGTA+CGG - chr3_3:86338553-86338572 Msa0480780:CDS 50.0%
AAATAGTAGGCACGGCACCA+TGG + chr3_3:86338860-86338879 None:intergenic 50.0%
!! TTGAAGAAGCAGAGTGCCGT+AGG - chr3_3:86339601-86339620 Msa0480780:intron 50.0%
!! TGAAGAAGCAGAGTGCCGTA+GGG - chr3_3:86339602-86339621 Msa0480780:intron 50.0%
GTGCCGTAGGGCTTATGATT+TGG - chr3_3:86339614-86339633 Msa0480780:intron 50.0%
TAGATAGACGCCACTTGGCT+TGG - chr3_3:86340385-86340404 Msa0480780:intron 50.0%
TCAAACCTGAGACCTTGAGG+AGG + chr3_3:86340446-86340465 None:intergenic 50.0%
TCTCTGATCACTCAGAGTGG+GGG - chr3_3:86340807-86340826 Msa0480780:CDS 50.0%
GCAATAAGCTCGTGGCTAAG+TGG - chr3_3:86341328-86341347 Msa0480780:intron 50.0%
ATAAGCTCGTGGCTAAGTGG+CGG - chr3_3:86341331-86341350 Msa0480780:intron 50.0%
GCTAAGTGGCGGTTACCAAA+CGG - chr3_3:86341342-86341361 Msa0480780:intron 50.0%
CTAAGTGGCGGTTACCAAAC+GGG - chr3_3:86341343-86341362 Msa0480780:intron 50.0%
GGCAAAGGATATAAGCAGGG+GGG - chr3_3:86341488-86341507 Msa0480780:intron 50.0%
!! TGCCACTTTCTTGGAGTGTG+AGG - chr3_3:86341978-86341997 Msa0480780:intron 50.0%
TGCCTCACACTCCAAGAAAG+TGG + chr3_3:86341983-86342002 None:intergenic 50.0%
! GCCTTGTTGAATTGACGACC+AGG - chr3_3:86342352-86342371 Msa0480780:intron 50.0%
! GTGGTTGAGAGTAGTGGAAC+CGG - chr3_3:86342522-86342541 Msa0480780:intron 50.0%
! CTCGGACTTTTCACCTTCAC+TGG + chr3_3:86342722-86342741 None:intergenic 50.0%
TCAAGGCAGAAAGCTGAGGA+AGG - chr3_3:86342928-86342947 Msa0480780:CDS 50.0%
TGCACTACTGCGGGATTTGA+GGG + chr3_3:86342977-86342996 None:intergenic 50.0%
ACAAGCTCAGTCTGCTCAAG+AGG - chr3_3:86343026-86343045 Msa0480780:intron 50.0%
AGGAGGCTGATGAGTGGAAA+CGG - chr3_3:86343046-86343065 Msa0480780:intron 50.0%
AGAAATGGGTGGGTATCAGG+AGG + chr3_3:86343217-86343236 None:intergenic 50.0%
AGGCTGCTGAGTCCAAGATA+AGG - chr3_3:86343561-86343580 Msa0480780:intron 50.0%
CAAGGCCCAGTCATATGAGA+GGG - chr3_3:86343658-86343677 Msa0480780:intron 50.0%
CTGAAGTGGCTGATAGAGCA+CGG - chr3_3:86343801-86343820 Msa0480780:intron 50.0%
TGAAGTGGCTGATAGAGCAC+GGG - chr3_3:86343802-86343821 Msa0480780:intron 50.0%
GAAGAGTGAGATGCAGAGAC+TGG - chr3_3:86343850-86343869 Msa0480780:intron 50.0%
TGAGATGCAGAGACTGGCAA+TGG - chr3_3:86343856-86343875 Msa0480780:intron 50.0%
GAGACTGGCAATGGAAAGAC+TGG - chr3_3:86343865-86343884 Msa0480780:intron 50.0%
! GAGAGCAACGGATTCAGAGA+AGG - chr3_3:86343961-86343980 Msa0480780:intron 50.0%
AGTTGCGAAGCTCGAAGAGA+AGG - chr3_3:86343997-86344016 Msa0480780:intron 50.0%
CAACCGATGGTAAGCGATTG+AGG - chr3_3:86344257-86344276 Msa0480780:intron 50.0%
TGCCCTCAATCGCTTACCAT+CGG + chr3_3:86344263-86344282 None:intergenic 50.0%
TAAGGGGAGCTAAAAGAGCC+AGG - chr3_3:86344338-86344357 Msa0480780:intron 50.0%
!! CTTAGGACTGGTTGTACTCC+TGG + chr3_3:86344359-86344378 None:intergenic 50.0%
TGGCTGTGTGTACTTAGGAC+TGG + chr3_3:86344371-86344390 None:intergenic 50.0%
TACACACAGCCAGAAGATGG+TGG - chr3_3:86344379-86344398 Msa0480780:intron 50.0%
TTCTCGCTTAAGCTTCGGGA+TGG + chr3_3:86344473-86344492 None:intergenic 50.0%
!! TTCTTCAGAGGTGATGACGG+GGG - chr3_3:86344578-86344597 Msa0480780:intron 50.0%
!! CGGCGGGGTTTTCCTTGTTT+CGG + chr3_3:86335823-86335842 None:intergenic 55.0%
GATGAAGAAGATGGCCTCGC+CGG + chr3_3:86335869-86335888 None:intergenic 55.0%
ACAAGGCGAATAGCTCTCGG+TGG + chr3_3:86335908-86335927 None:intergenic 55.0%
CGACGGCTTCTGGATCCATA+CGG + chr3_3:86335955-86335974 None:intergenic 55.0%
CTTATCCCACTAAGCGGGGT+CGG + chr3_3:86336995-86337014 None:intergenic 55.0%
! AGGCCTTATCCCACTAAGCG+GGG + chr3_3:86336999-86337018 None:intergenic 55.0%
CTGCAGCTCTTAGGAAGCAG+TGG - chr3_3:86337123-86337142 Msa0480780:intron 55.0%
CAGCTCTTAGGAAGCAGTGG+TGG - chr3_3:86337126-86337145 Msa0480780:intron 55.0%
GACCCTGTACCAAAGGGCTT+TGG - chr3_3:86337172-86337191 Msa0480780:intron 55.0%
GCTCCACATCCAAAGCCCTT+TGG + chr3_3:86337184-86337203 None:intergenic 55.0%
! TGTGGAGCGCACCTTTGAAG+AGG - chr3_3:86337196-86337215 Msa0480780:intron 55.0%
GAGGACCGCACTTGATGGAA+CGG - chr3_3:86337215-86337234 Msa0480780:intron 55.0%
ACAGACCCACAAACCGGTCA+TGG + chr3_3:86337548-86337567 None:intergenic 55.0%
! CTTCCTCAGGTGGCTTGGAA+CGG + chr3_3:86339668-86339687 None:intergenic 55.0%
ACTCACTTCCTCAGGTGGCT+TGG + chr3_3:86339673-86339692 None:intergenic 55.0%
!! CTGTAGGAGTTGGTGCAGCT+AGG - chr3_3:86339832-86339851 Msa0480780:intron 55.0%
!! GACTGCAAGGGGTTGGTTTG+TGG - chr3_3:86340036-86340055 Msa0480780:intron 55.0%
!! TTGGCTTGGCTTGGTGGTGT+TGG - chr3_3:86340399-86340418 Msa0480780:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG + chr3_3:86340432-86340451 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG - chr3_3:86340431-86340450 Msa0480780:intron 55.0%
GCCCACCCAAATTGGCACAA+AGG + chr3_3:86340473-86340492 None:intergenic 55.0%
CTCTGATCACTCAGAGTGGG+GGG - chr3_3:86340808-86340827 Msa0480780:CDS 55.0%
TTCCAGCCGCTTGGTCAGTA+AGG + chr3_3:86342698-86342717 None:intergenic 55.0%
GCAAGCTAATCGTCGCTCAC+TGG - chr3_3:86342819-86342838 Msa0480780:intron 55.0%
CTGCACTACTGCGGGATTTG+AGG + chr3_3:86342978-86342997 None:intergenic 55.0%
TTGCTTCGGCTGCACTACTG+CGG + chr3_3:86342987-86343006 None:intergenic 55.0%
TAGTGCAGCCGAAGCAAGGT+TGG - chr3_3:86342990-86343009 Msa0480780:CDS 55.0%
TGCTGCTGCCAACCTTGCTT+CGG + chr3_3:86343001-86343020 None:intergenic 55.0%
AAGCAAGGTTGGCAGCAGCA+AGG - chr3_3:86343001-86343020 Msa0480780:CDS 55.0%
AGCAAGGTTGGCAGCAGCAA+GGG - chr3_3:86343002-86343021 Msa0480780:CDS 55.0%
AGCTCAGTCTGCTCAAGAGG+AGG - chr3_3:86343029-86343048 Msa0480780:intron 55.0%
CTCAAGAGGAGGCTGATGAG+TGG - chr3_3:86343040-86343059 Msa0480780:intron 55.0%
CCTCTCATATGACTGGGCCT+TGG + chr3_3:86343660-86343679 None:intergenic 55.0%
CCAAGGCCCAGTCATATGAG+AGG - chr3_3:86343657-86343676 Msa0480780:intron 55.0%
AGCTGCAAGGGCTACTGAAG+TGG - chr3_3:86343787-86343806 Msa0480780:intron 55.0%
TGAAGCAGGCATGGCTCAGA+AGG - chr3_3:86343826-86343845 Msa0480780:intron 55.0%
CACAGATTGAGAGGGCTGAG+AGG - chr3_3:86343888-86343907 Msa0480780:intron 55.0%
AGAGCGTGAGGCACATACAC+AGG - chr3_3:86344114-86344133 Msa0480780:intron 55.0%
TCTGCAGCTACAGTCTGCAC+AGG - chr3_3:86344162-86344181 Msa0480780:intron 55.0%
AGATTGCGGTGACGCATCGG+CGG + chr3_3:86335840-86335859 None:intergenic 60.0%
CGGAGATTGCGGTGACGCAT+CGG + chr3_3:86335843-86335862 None:intergenic 60.0%
CGATGCGTCACCGCAATCTC+CGG - chr3_3:86335841-86335860 Msa0480780:three_prime_UTR 60.0%
GCGAATAGCTCTCGGTGGTC+CGG + chr3_3:86335903-86335922 None:intergenic 60.0%
TGTTTGTGGTCGTGCTCGCC+AGG - chr3_3:86336015-86336034 Msa0480780:three_prime_UTR 60.0%
GTTTGTGGTCGTGCTCGCCA+GGG - chr3_3:86336016-86336035 Msa0480780:three_prime_UTR 60.0%
ACTAAGCGGGGTCGGCTACA+TGG + chr3_3:86336987-86337006 None:intergenic 60.0%
ATGTAGCCGACCCCGCTTAG+TGG - chr3_3:86336986-86337005 Msa0480780:CDS 60.0%
TGTAGCCGACCCCGCTTAGT+GGG - chr3_3:86336987-86337006 Msa0480780:CDS 60.0%
CGACCCCGCTTAGTGGGATA+AGG - chr3_3:86336993-86337012 Msa0480780:CDS 60.0%
TGACCGTTCCAAGCCACCTG+AGG - chr3_3:86339662-86339681 Msa0480780:intron 60.0%
!! AGACGCCACTTGGCTTGGCT+TGG - chr3_3:86340390-86340409 Msa0480780:intron 60.0%
CACCACCAAGCCAAGCCAAG+TGG + chr3_3:86340398-86340417 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - chr3_3:86340438-86340457 Msa0480780:intron 60.0%
! CTTGTTATCAGCGGCGGTGG+TGG + chr3_3:86340558-86340577 None:intergenic 60.0%
CCACCGCCGCTGATAACAAG+CGG - chr3_3:86340558-86340577 Msa0480780:intron 60.0%
!! CTGCCGCTTGTTATCAGCGG+CGG + chr3_3:86340564-86340583 None:intergenic 60.0%
! TGCCCTGCCAGCAGTTTTGC+TGG - chr3_3:86340590-86340609 Msa0480780:intron 60.0%
! GCCCTGCCAGCAGTTTTGCT+GGG - chr3_3:86340591-86340610 Msa0480780:intron 60.0%
GCCCAGCAAAACTGCTGGCA+GGG + chr3_3:86340595-86340614 None:intergenic 60.0%
CTCTCGCCCAGCAAAACTGC+TGG + chr3_3:86340600-86340619 None:intergenic 60.0%
! CAGCAGTTTTGCTGGGCGAG+AGG - chr3_3:86340598-86340617 Msa0480780:intron 60.0%
GACCTTACTGACCAAGCGGC+TGG - chr3_3:86342693-86342712 Msa0480780:CDS 60.0%
!! TTCACTGGCTTCCAGCCGCT+TGG + chr3_3:86342707-86342726 None:intergenic 60.0%
AAGCGGCTGGAAGCCAGTGA+AGG - chr3_3:86342706-86342725 Msa0480780:CDS 60.0%
TGCTTCGGCTGCACTACTGC+GGG + chr3_3:86342986-86343005 None:intergenic 60.0%
GCAGTAGTGCAGCCGAAGCA+AGG - chr3_3:86342986-86343005 Msa0480780:CDS 60.0%
! GATAGAGCACGGGCTGAAGC+AGG - chr3_3:86343812-86343831 Msa0480780:intron 60.0%
GCAGAGAGAGACTCTCAGCC+CGG + chr3_3:86344147-86344166 None:intergenic 60.0%
! ATTGCGGTGACGCATCGGCG+GGG + chr3_3:86335838-86335857 None:intergenic 65.0%
! GATTGCGGTGACGCATCGGC+GGG + chr3_3:86335839-86335858 None:intergenic 65.0%
!! CGCCACTTGGCTTGGCTTGG+TGG - chr3_3:86340393-86340412 Msa0480780:intron 65.0%
! GTTATCAGCGGCGGTGGTGG+TGG + chr3_3:86340555-86340574 None:intergenic 65.0%
!! CCGCTTGTTATCAGCGGCGG+TGG + chr3_3:86340561-86340580 None:intergenic 65.0%
CGCCCAGCAAAACTGCTGGC+AGG + chr3_3:86340596-86340615 None:intergenic 65.0%
! AGCACGGGCTGAAGCAGGCA+TGG - chr3_3:86343817-86343836 Msa0480780:intron 65.0%
GTCACCGCAATCTCCGGCGC+CGG - chr3_3:86335847-86335866 Msa0480780:three_prime_UTR 70.0%
! CTCGCCGGCGCCGGAGATTG+CGG + chr3_3:86335854-86335873 None:intergenic 75.0%
GAAGATGGCCTCGCCGGCGC+CGG + chr3_3:86335863-86335882 None:intergenic 75.0%
!!! CGCAATCTCCGGCGCCGGCG+AGG - chr3_3:86335852-86335871 Msa0480780:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 86335724 86344971 86335724 ID=Msa0480780;Name=Msa0480780
chr3_3 mRNA 86335724 86344971 86335724 ID=Msa0480780-mRNA-1;Parent=Msa0480780;Name=Msa0480780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=79|1|1|1|1|1|14|380|1061
chr3_3 exon 86335724 86337132 86335724 ID=Msa0480780-mRNA-1:exon:24910;Parent=Msa0480780-mRNA-1
chr3_3 exon 86337292 86337369 86337292 ID=Msa0480780-mRNA-1:exon:24909;Parent=Msa0480780-mRNA-1
chr3_3 exon 86337492 86338104 86337492 ID=Msa0480780-mRNA-1:exon:24908;Parent=Msa0480780-mRNA-1
chr3_3 exon 86338211 86338296 86338211 ID=Msa0480780-mRNA-1:exon:24907;Parent=Msa0480780-mRNA-1
chr3_3 exon 86338524 86338646 86338524 ID=Msa0480780-mRNA-1:exon:24906;Parent=Msa0480780-mRNA-1
chr3_3 exon 86340793 86340927 86340793 ID=Msa0480780-mRNA-1:exon:24905;Parent=Msa0480780-mRNA-1
chr3_3 exon 86341009 86341098 86341009 ID=Msa0480780-mRNA-1:exon:24904;Parent=Msa0480780-mRNA-1
chr3_3 exon 86341802 86341987 86341802 ID=Msa0480780-mRNA-1:exon:24903;Parent=Msa0480780-mRNA-1
chr3_3 exon 86342075 86342176 86342075 ID=Msa0480780-mRNA-1:exon:24902;Parent=Msa0480780-mRNA-1
chr3_3 exon 86342652 86342765 86342652 ID=Msa0480780-mRNA-1:exon:24901;Parent=Msa0480780-mRNA-1
chr3_3 exon 86342895 86343038 86342895 ID=Msa0480780-mRNA-1:exon:24900;Parent=Msa0480780-mRNA-1
chr3_3 exon 86343221 86343286 86343221 ID=Msa0480780-mRNA-1:exon:24899;Parent=Msa0480780-mRNA-1
chr3_3 exon 86343405 86343566 86343405 ID=Msa0480780-mRNA-1:exon:24898;Parent=Msa0480780-mRNA-1
chr3_3 exon 86344635 86344971 86344635 ID=Msa0480780-mRNA-1:exon:24897;Parent=Msa0480780-mRNA-1
chr3_3 five_prime_UTR 86344893 86344971 86344893 ID=Msa0480780-mRNA-1:five_prime_utr;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86344635 86344892 86344635 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86343405 86343566 86343405 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86343221 86343286 86343221 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86342895 86343038 86342895 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86342652 86342765 86342652 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86342075 86342176 86342075 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86341802 86341987 86341802 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86341009 86341098 86341009 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86340793 86340927 86340793 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86338524 86338646 86338524 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86338211 86338296 86338211 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86337492 86338104 86337492 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86337292 86337369 86337292 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 CDS 86336104 86337132 86336104 ID=Msa0480780-mRNA-1:cds;Parent=Msa0480780-mRNA-1
chr3_3 three_prime_UTR 86335724 86336103 86335724 ID=Msa0480780-mRNA-1:three_prime_utr;Parent=Msa0480780-mRNA-1
Gene Sequence

>Msa0480780

ATGTTCAATTTGTTTAACCGAAACAAGGAAAACCCCGCCGATGCGTCACCGCAATCTCCGGCGCCGGCGAGGCCATCTTCTTCATCTTCTCAGTTCACCGGACCACCGAGAGCTATTCGCCTTGTCTACTGCGATGAAAAGGGAAAGTTCCGTATGGATCCAGAAGCCGTCGCTATTCTTCAACTCGTCAAGGAACCCATCGGTGTCGTTTCTGTTTGTGGTCGTGCTCGCCAGGGAAAAAGCTATATCTTGAACCAGCTCTTAGGAAGCAGTGGTGGATTTAAAGTAGCATCTACACATCGACCCTGTACCAAAGGGCTTTGGATGTGGAGCGCACCTTTGAAGAGGACCGCACTTGATGGAACGGAGTACAATCTTCTACTATTAGACAGTGAAGGAATAGATGCTTATGATCAAACGGGAACATACAGCACCCAGATATTCTCACTGGCTGTTCTTTTATCTAGCATGTTCATTTACAACCAGATGGGTGGTATAGATGAGGCTGCTCTTGACCGTCTTTCTCTAGTCACTCAAATGACAAAGCATATTCGTGTTAGAGCTTCTGGAGAAAAGACTTCCGCGTCTGAAATAGGACAGTTTTCCCCAATTTTTGTTTGGCTCTTACGGGACTTCTATTTGGACTTGAGTGAAGATAACAGAAAAATAACACCCCGAGACTATCTAGAACTTGCTTTGCGGTCTGTTCAAGGGAACAGAAACGATGTAGCTGCTAAAAATGAGATTCGAGAATCCATTCGTGCTCTATTCCCAGATAGGGAATGCTTCACCCTTGTACGGCCTTTAAACAATGAAAATGATCTACAGCGACTGGACCAGATATCATCGGACAAACTAAGACCTGAATTTCGAAGAGATATTCAAGCTTTGATAAAGTTTGTTTTTGAAAGAACAAGGCCAAAGCAAGTTGGAGCAACTATGATGACAGGTCCTGTATTGATTGGTATCACCGAATCTTATCTTGATGCACTCAACCATGGTGCCGTGCCTACTATTTCTTCCTCCTGGCAGAGTGTTGAAGAAGCAGAGTGCCGTAGGGCTTATGATTTGGCTTCTGAAGTTTATATGGCTTCTTTTGACCGTTCCAAGCCACCTGAGGAAGTCGCTTTGATGGAAGCTCACGAACAAGCAGTTCATAAGTCAATGGCTGCTTTTAATGCTAGTGCTGTAGGAGTTGGTGCAGCTAGGAAGAAATATGAAGGTCAGCTTCAGAAATTCATCAAAAAGGCTTTCGAGGATTACAAAAGGAATGCATTCATGGAGGCAGATATACAATGTTCAAATGCCATACATTCTATGGAAAAGAGGCTGAGGGCAGCTTGTAATGCTTCTGATGCTAGGGTTGATAATGTTGCAAAGGTTCTAGATGCTCTTTTAACTGAATATGAAAAGTCCATTCAAGGTCCTGGAAAATGGAAAAAACTTGCTGTCTTCTTGCAGCAAAGTTTTGAAGGCCCTGTGCTTGACCTTTTCAAGAGGGTAATAGATAAAGTTGAATCAGAAAAAAGTTCTCTTGCCTTACAACGTCGGTTGAATGAAGATAAGATGACCTTACTGACCAAGCGGCTGGAAGCCAGTGAAGGTGAAAAGTCCGAGTACATCAAGCGATATGAGGATGCCATCAACGATAAGAAGAAATTAACTGATGAATACATGAACCGCATTACTGAATTGCAAGCTAATCGTCGCTCACTGGACGAGAGATATTCTAGCTTATTGAAAACATTGGACTCTAGTAAGCAGGAATCCATGGATTGGAAAAGAAAATATGAACAGGTTTTATCAAGGCAGAAAGCTGAGGAAGGTCAAACTAGTTCTGAAATAGCAGCCCTCAAATCCCGCAGTAGTGCAGCCGAAGCAAGGTTGGCAGCAGCAAGGGAACAAGCTCAGTCTGCTCAAGAGGAGGCTGATGAGTGGAAACGGAAGTATGATGTTGCTGTCAGAGAAGCAAAATCTGCTCTAGAGAAGGCAGCAATTGTTCAGGAGCGCACAAACAAGCAGACACAGTTGAGGGAAGATGTCTTAAGAGAAGAGTTCTCTGGAACTTTGGCTGAAAAAGATGAAGAAATAAAAGAAAAAACTGCGAAAATTGAGCATGCTGAGATGTGTTTAGCAACTCTGAAATTAGAGTTGAAGGCTGCTGAGTCCAAGATAAGGAGTTATGATACAGAAATATCGTCACTGAGGAATGAAATTAAAGATTTGACTGACAAAATGAAATCTGAAAATGCCAAGGCCCAGTCATATGAGAGGGAAGCAATAGTATATCAGCAGGAAAAGAACCATCTTGAGCAGAAGTACCAATCTGAGTTCAAAAGATTTGAGGAGGTTCAAGAAAGGTGTAAAACTGCTGAAAAAGAAGCTGCAAGGGCTACTGAAGTGGCTGATAGAGCACGGGCTGAAGCAGGCATGGCTCAGAAGGAGAAGAGTGAGATGCAGAGACTGGCAATGGAAAGACTGGCACAGATTGAGAGGGCTGAGAGGAGAATTGAAACTCTAGGAAGGGAGAAAGATAATCTGGAAGGTGAATTGCAGAGAGCAACGGATTCAGAGAAGGATGCACGTTTGACAGTTGCGAAGCTCGAAGAGAAGGTGCAACAAAGAGAGAAGGATTTAGAAGCACTTCTGGATAAAGATAAAACACACAGGAGAAATAATGCTCAGATTCTTGAACAACTTTTGGAAACAGAGCGTGAGGCACATACACAGGCAAATAACCGGGCTGAGAGTCTCTCTCTGCAGCTACAGTCTGCACAGGCCAAAATTGACTCCCTACATCAAGAGCTGACTAAGTTTCGAATGAATGAAACATTGGACAGTAAGCTAAAGACAACCGATGGTAAGCGATTGAGGGCAGAGAATGACAATGGTGCTGATTCTGTACAAGACATGGATGCAAGCCCTAGATTTTTAAGGGGAGCTAAAAGAGCCAGGAGTACAACCAGTCCTAAGTACACACAGCCAGAAGATGGTGGTTCAATCTATGAGGGTGCAGAGGACAATCTTAGTCAGCAAGCCAATGAAGAGGATCATACAAAGTTCACCATCCCGAAGCTTAAGCGAGAACTGACAAAACATAACTTTGGTGATCGGTTGCTTCAGTTGAAGAATCCCATGAAGAAAGATCTTGTTGCTCTGTATGAGGAATGTATTCTTCAGAGGTGA
Protein sequence

>Msa0480780

MFNLFNRNKENPADASPQSPAPARPSSSSSQFTGPPRAIRLVYCDEKGKFRMDPEAVAILQLVKEPIGVVSVCGRARQGKSYILNQLLGSSGGFKVASTHRPCTKGLWMWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGEKTSASEIGQFSPIFVWLLRDFYLDLSEDNRKITPRDYLELALRSVQGNRNDVAAKNEIRESIRALFPDRECFTLVRPLNNENDLQRLDQISSDKLRPEFRRDIQALIKFVFERTRPKQVGATMMTGPVLIGITESYLDALNHGAVPTISSSWQSVEEAECRRAYDLASEVYMASFDRSKPPEEVALMEAHEQAVHKSMAAFNASAVGVGAARKKYEGQLQKFIKKAFEDYKRNAFMEADIQCSNAIHSMEKRLRAACNASDARVDNVAKVLDALLTEYEKSIQGPGKWKKLAVFLQQSFEGPVLDLFKRVIDKVESEKSSLALQRRLNEDKMTLLTKRLEASEGEKSEYIKRYEDAINDKKKLTDEYMNRITELQANRRSLDERYSSLLKTLDSSKQESMDWKRKYEQVLSRQKAEEGQTSSEIAALKSRSSAAEARLAAAREQAQSAQEEADEWKRKYDVAVREAKSALEKAAIVQERTNKQTQLREDVLREEFSGTLAEKDEEIKEKTAKIEHAEMCLATLKLELKAAESKIRSYDTEISSLRNEIKDLTDKMKSENAKAQSYEREAIVYQQEKNHLEQKYQSEFKRFEEVQERCKTAEKEAARATEVADRARAEAGMAQKEKSEMQRLAMERLAQIERAERRIETLGREKDNLEGELQRATDSEKDARLTVAKLEEKVQQREKDLEALLDKDKTHRRNNAQILEQLLETEREAHTQANNRAESLSLQLQSAQAKIDSLHQELTKFRMNETLDSKLKTTDGKRLRAENDNGADSVQDMDASPRFLRGAKRARSTTSPKYTQPEDGGSIYEGAEDNLSQQANEEDHTKFTIPKLKRELTKHNFGDRLLQLKNPMKKDLVALYEECILQR*