AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652690 MtrunA17_Chr4g0046381 98.211 1062 16 2 1 1061 1 1060 0.0 2137
Msa0652690 MtrunA17_Chr8g0367751 98.701 154 2 0 427 580 1 154 7.21e-100 311
Msa0652690 MtrunA17_Chr7g0260571 28.861 395 244 13 49 429 41 412 2.66e-31 130
Msa0652690 MtrunA17_Chr1g0184871 34.752 141 89 2 49 187 37 176 5.74e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652690 AT5G46070.1 63.501 1074 365 8 1 1059 1 1062 0.0 1320
Msa0652690 AT1G03830.2 33.487 1084 582 18 37 1061 10 1013 7.09e-160 499
Msa0652690 AT1G03830.1 32.380 1084 572 20 37 1061 10 991 3.62e-144 457
Msa0652690 AT2G38840.1 30.446 381 234 13 49 421 42 399 7.24e-33 136

Find 247 sgRNAs with CRISPR-Local

Find 633 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTCGTGTTAGAGCTTC+TGG 0.217599 4_3:+60393883 Msa0652690:CDS
TTGATGTAGGGAGTCAATTT+TGG 0.236521 4_3:-60400351 None:intergenic
GAACAGCCAGTGAGAATATC+TGG 0.241610 4_3:-60393589 None:intergenic
TCAGATTCTTGAACAACTTT+TGG 0.243272 4_3:+60400253 Msa0652690:CDS
TGAAGAATAGCGACGGCTTC+TGG 0.244650 4_3:-60392128 None:intergenic
TTTGGCTTCTGAAGTTTATA+TGG 0.244661 4_3:+60395798 Msa0652690:CDS
TTCAAATGCCATACATTCTA+TGG 0.256941 4_3:+60398257 Msa0652690:CDS
ATAATGTAGCTCGTCTAATA+TGG 0.265458 4_3:-60401060 None:intergenic
TGAATATCTCTTCGAAATTC+AGG 0.265912 4_3:-60394889 None:intergenic
CCATTCAAGGTCCTGGAAAA+TGG 0.269211 4_3:+60398599 Msa0652690:CDS
TAATTTCTTCTTATCGTTGA+TGG 0.287384 4_3:-60398930 None:intergenic
GAAGGATTTAGAAGCACTTC+TGG 0.288775 4_3:+60400199 Msa0652690:CDS
TTGGTGGCAGGACTTCTATT+TGG 0.301399 4_3:+60394086 Msa0652690:intron
AAGACTTCCGCGTCTGAAAT+AGG 0.302341 4_3:+60393910 Msa0652690:CDS
GTCAGTTCTCGCTTAAGCTT+CGG 0.302731 4_3:-60400641 None:intergenic
TCAGTTCTCGCTTAAGCTTC+GGG 0.316124 4_3:-60400640 None:intergenic
GCTTCAGAAATTCATCAAAA+AGG 0.324812 4_3:+60396038 Msa0652690:CDS
CTGCACTACTGCGGGATTTG+AGG 0.333363 4_3:-60399141 None:intergenic
AGAAGAGTTCTCTGGAACTT+TGG 0.337253 4_3:+60399339 Msa0652690:CDS
GTGCCGTAGGGCTTATGATT+TGG 0.341173 4_3:+60395780 Msa0652690:CDS
ATAGTTGCTCCAACTTGCTT+TGG 0.353087 4_3:-60394946 None:intergenic
TGTATCATAACTCCTTATCT+TGG 0.353386 4_3:-60399739 None:intergenic
TAGATTGAACCACCATCTTC+TGG 0.355525 4_3:-60400554 None:intergenic
TGTTTGTGGTCGTGCTCGCC+AGG 0.358739 4_3:+60392181 Msa0652690:CDS
ATCGGTGTCGTTTCTGTTTG+TGG 0.362431 4_3:+60392167 Msa0652690:CDS
AGGGTGAAGCATTCCCTATC+TGG 0.363281 4_3:-60394712 None:intergenic
CACATACACAGGCAAATAAC+CGG 0.367024 4_3:+60400291 Msa0652690:CDS
AACTCTGAAATTAGAGTTGA+AGG 0.370925 4_3:+60399548 Msa0652690:CDS
TACTATTTCTTCCTCCTGGC+AGG 0.371704 4_3:+60395038 Msa0652690:CDS
CTTGCTTTGCGGTCTGTTCA+AGG 0.378443 4_3:+60394156 Msa0652690:CDS
TTCATTCAACCGACGTTGTA+AGG 0.380049 4_3:-60398828 None:intergenic
AGGAAGGGAGAAAGATAATC+TGG 0.381254 4_3:+60400091 Msa0652690:CDS
CTTTGTATGATCCTCTTCAT+TGG 0.383035 4_3:-60400609 None:intergenic
TGCACTACTGCGGGATTTGA+GGG 0.400154 4_3:-60399140 None:intergenic
TTGCTTCCCTCTCATATGAC+TGG 0.404679 4_3:-60399830 None:intergenic
AAAAGTTACTCACTGATATC+TGG 0.406828 4_3:-60394777 None:intergenic
GACCCTGTACCAAAGGGCTT+TGG 0.408344 4_3:+60393338 Msa0652690:CDS
AGAGAAGGCAGCAATTGTTC+AGG 0.413046 4_3:+60399273 Msa0652690:CDS
CCTTGTCTACTGCGATGAAA+AGG 0.414963 4_3:+60392088 Msa0652690:CDS
TTGAAGAGGACCGCACTTGA+TGG 0.416779 4_3:+60393376 Msa0652690:CDS
AGCAATGATTATCATATTGT+AGG 0.417295 4_3:+60400934 Msa0652690:three_prime_UTR
TGCCTACTATTTCTTCCTCC+TGG 0.418883 4_3:+60395034 Msa0652690:CDS
CTTGTAATGCTTCTGATGCT+AGG 0.420952 4_3:+60398298 Msa0652690:CDS
TTCACTGGCTTCCAGCCGCT+TGG 0.422240 4_3:-60398870 None:intergenic
CATCCAAAGCCCTTTGGTAC+AGG 0.424224 4_3:-60393341 None:intergenic
TGCTGCTGCCAACCTTGCTT+CGG 0.431643 4_3:-60399164 None:intergenic
TTACAAAAGGAATGCATTCA+TGG 0.431741 4_3:+60398218 Msa0652690:CDS
CAACCGATGGTAAGCGATTG+AGG 0.435894 4_3:+60400423 Msa0652690:CDS
AGCAACAAGATCTTTCTTCA+TGG 0.439505 4_3:-60400705 None:intergenic
CTTAGGACTGGTTGTACTCC+TGG 0.439972 4_3:-60400522 None:intergenic
GATAGAGCACGGGCTGAAGC+AGG 0.446378 4_3:+60399978 Msa0652690:CDS
CTCTAGTAAGCAGGAATCCA+TGG 0.447658 4_3:+60399042 Msa0652690:CDS
TTGGAAAAGAAAATATGAAC+AGG 0.447825 4_3:+60399066 Msa0652690:CDS
CATTGTTTAAAGGCCGTACA+AGG 0.448349 4_3:-60394732 None:intergenic
CGATGCGTCACCGCAATCTC+CGG 0.449488 4_3:+60392007 Msa0652690:CDS
TGCTTCGGCTGCACTACTGC+GGG 0.453229 4_3:-60399149 None:intergenic
CGCAATCTCCGGCGCCGGCG+AGG 0.456199 4_3:+60392018 Msa0652690:CDS
TTCTAGCTTATTGAAAACAT+TGG 0.457291 4_3:+60399018 Msa0652690:CDS
CCTCTCATATGACTGGGCCT+TGG 0.458441 4_3:-60399823 None:intergenic
AACAGATCAAATAGATAGAT+AGG 0.458492 4_3:-60401114 None:intergenic
TATCTATTACCCTCTTGAAA+AGG 0.460525 4_3:-60398778 None:intergenic
GTACCAAAGGGCTTTGGATG+TGG 0.460841 4_3:+60393344 Msa0652690:CDS
ACTCACTTCCTCAGGTGGCT+TGG 0.464273 4_3:-60395836 None:intergenic
GCAAGCTAATCGTCGCTCAC+TGG 0.465514 4_3:+60398985 Msa0652690:CDS
TTGCTGTCTTCTTGCAGCAA+AGG 0.466814 4_3:+60398629 Msa0652690:CDS
GCAACAAGATCTTTCTTCAT+GGG 0.467500 4_3:-60400704 None:intergenic
TGGCTGTGTGTACTTAGGAC+TGG 0.467783 4_3:-60400534 None:intergenic
AGCAAGTTCTAGATAGTCTC+GGG 0.469812 4_3:-60394139 None:intergenic
TGAAGCAGGCATGGCTCAGA+AGG 0.471929 4_3:+60399992 Msa0652690:CDS
TAAGGGGAGCTAAAAGAGCC+AGG 0.473037 4_3:+60400504 Msa0652690:CDS
ACTATCTAGAACTTGCTTTG+CGG 0.474260 4_3:+60394145 Msa0652690:CDS
GCGAATAGCTCTCGGTGGTC+CGG 0.477132 4_3:-60392066 None:intergenic
CGGAGTGATAAAGAAGCAAC+AGG 0.477719 4_3:-60400788 None:intergenic
GAATATGAAAAGTCCATTCA+AGG 0.479415 4_3:+60398586 Msa0652690:CDS
CGTGCCATCAAAACTTCCTA+TGG 0.479937 4_3:-60400957 None:intergenic
ATCTGAGTTCAAAAGATTTG+AGG 0.483402 4_3:+60399896 Msa0652690:CDS
GATTGCGGTGACGCATCGGC+GGG 0.485484 4_3:-60392002 None:intergenic
CTCATATCGCTTGATGTACT+CGG 0.485796 4_3:-60398903 None:intergenic
GCTTCTTTATCACTCCGTCT+AGG 0.486784 4_3:+60400794 Msa0652690:three_prime_UTR
GTCTTAAGAGAAGAGTTCTC+TGG 0.488034 4_3:+60399331 Msa0652690:CDS
GAAGATGGCCTCGCCGGCGC+CGG 0.491115 4_3:-60392026 None:intergenic
GAAAAGTCCATTCAAGGTCC+TGG 0.494569 4_3:+60398592 Msa0652690:CDS
GACCTTACTGACCAAGCGGC+TGG 0.494825 4_3:+60398859 Msa0652690:CDS
AGATGGTGGTTCAATCTATG+AGG 0.494878 4_3:+60400559 Msa0652690:CDS
ACTTAGTCAGCTCTTGATGT+AGG 0.496077 4_3:-60400364 None:intergenic
AGCAAGGTTGGCAGCAGCAA+GGG 0.496730 4_3:+60399168 Msa0652690:CDS
CTTGTCTACTGCGATGAAAA+GGG 0.497647 4_3:+60392089 Msa0652690:CDS
GGAAGCAATAGTATATCAGC+AGG 0.497850 4_3:+60399845 Msa0652690:CDS
AATAGATGCTTATGATCAAA+CGG 0.498795 4_3:+60393435 Msa0652690:CDS
CTCGCCGGCGCCGGAGATTG+CGG 0.498820 4_3:-60392017 None:intergenic
AACATTGGACTCTAGTAAGC+AGG 0.500408 4_3:+60399033 Msa0652690:CDS
ACATTATTATTAATTAAGAC+TGG 0.500975 4_3:+60401076 Msa0652690:three_prime_UTR
TTGAAGAAGCAGAGTGCCGT+AGG 0.503816 4_3:+60395767 Msa0652690:CDS
TCTTCTGGCTGTGTGTACTT+AGG 0.505864 4_3:-60400539 None:intergenic
GAAGAGTGAGATGCAGAGAC+TGG 0.507152 4_3:+60400016 Msa0652690:CDS
TTGAACAACAGGATTACAAA+AGG 0.507556 4_3:+60398205 Msa0652690:intron
GAGTGCATCAAGATAAGATT+CGG 0.507604 4_3:-60394998 None:intergenic
GAACTGACAAAACATAACTT+TGG 0.508057 4_3:+60400656 Msa0652690:CDS
TTGTAATGCTTCTGATGCTA+GGG 0.508274 4_3:+60398299 Msa0652690:CDS
TGCTTCCCTCTCATATGACT+GGG 0.509387 4_3:-60399829 None:intergenic
GCTCCACATCCAAAGCCCTT+TGG 0.509572 4_3:-60393347 None:intergenic
TTCCAGCCGCTTGGTCAGTA+AGG 0.510381 4_3:-60398861 None:intergenic
ATTGGTACTTCTGCTCAAGA+TGG 0.512425 4_3:-60399875 None:intergenic
AGCACGGGCTGAAGCAGGCA+TGG 0.516913 4_3:+60399983 Msa0652690:CDS
TCTTCATCTTCTCAGTTCAC+CGG 0.517270 4_3:+60392047 Msa0652690:CDS
TAGTGCAGCCGAAGCAAGGT+TGG 0.519438 4_3:+60399156 Msa0652690:CDS
GATGAAGAAGATGGCCTCGC+CGG 0.522103 4_3:-60392032 None:intergenic
AGATCTTGTTGCTCTGTATG+AGG 0.522535 4_3:+60400715 Msa0652690:CDS
CCATACATTCTATGGAAAAG+AGG 0.523129 4_3:+60398265 Msa0652690:CDS
AGGAGGCTGATGAGTGGAAA+CGG 0.523697 4_3:+60399212 Msa0652690:CDS
GTAAGCAGGAATCCATGGAT+TGG 0.527042 4_3:+60399047 Msa0652690:CDS
CAAAACATAACTTTGGTGAT+CGG 0.527476 4_3:+60400663 Msa0652690:CDS
CGAGTACATCAAGCGATATG+AGG 0.528266 4_3:+60398904 Msa0652690:CDS
TGAAAATGATCTACAGCGAC+TGG 0.528388 4_3:+60394753 Msa0652690:CDS
CAATTTGTTTAACCGAAACA+AGG 0.530008 4_3:+60391974 Msa0652690:CDS
GTTTCGAATGAATGAAACAT+TGG 0.533871 4_3:+60400385 Msa0652690:CDS
TATTCTTCAGAGGTGATGAC+GGG 0.534020 4_3:+60400742 Msa0652690:exon
TTCGTGCTCTATTCCCAGAT+AGG 0.534115 4_3:+60394698 Msa0652690:CDS
CGGAGATTGCGGTGACGCAT+CGG 0.534432 4_3:-60392006 None:intergenic
CTTAGTCAGCTCTTGATGTA+GGG 0.535301 4_3:-60400363 None:intergenic
TTGCTTCGGCTGCACTACTG+CGG 0.535804 4_3:-60399150 None:intergenic
GGGAATGCTTCACCCTTGTA+CGG 0.536278 4_3:+60394719 Msa0652690:CDS
ATCTGGGAATAGAGCACGAA+TGG 0.537348 4_3:-60394695 None:intergenic
GAGACTGGCAATGGAAAGAC+TGG 0.537477 4_3:+60400031 Msa0652690:CDS
AATGCTAGTGCTGTAGGAGT+TGG 0.539159 4_3:+60395988 Msa0652690:CDS
ACAAGCTCAGTCTGCTCAAG+AGG 0.539174 4_3:+60399192 Msa0652690:CDS
CGCTATTCTTCAACTCGTCA+AGG 0.540905 4_3:+60392139 Msa0652690:CDS
CTCTTGAAAAGGTCAAGCAC+AGG 0.541952 4_3:-60398767 None:intergenic
GATAGATTACTCACTTCCTC+AGG 0.542341 4_3:-60395844 None:intergenic
GTCACCGCAATCTCCGGCGC+CGG 0.543657 4_3:+60392013 Msa0652690:CDS
TTGCTTTGCGGTCTGTTCAA+GGG 0.544567 4_3:+60394157 Msa0652690:CDS
GATTTGAGGAGGTTCAAGAA+AGG 0.544667 4_3:+60399910 Msa0652690:CDS
GCAGAGAGAGACTCTCAGCC+CGG 0.547945 4_3:-60400310 None:intergenic
CTTCCTCAGGTGGCTTGGAA+CGG 0.548072 4_3:-60395831 None:intergenic
TCGTGCTCTATTCCCAGATA+GGG 0.548667 4_3:+60394699 Msa0652690:CDS
CACATCGACCCTGTACCAAA+GGG 0.549082 4_3:+60393332 Msa0652690:CDS
AAGCAAGTTCTAGATAGTCT+CGG 0.551084 4_3:-60394140 None:intergenic
TCAAGTGCGGTCCTCTTCAA+AGG 0.551883 4_3:-60393373 None:intergenic
TGCCCTCAATCGCTTACCAT+CGG 0.552858 4_3:-60400426 None:intergenic
AACCGATGGTAAGCGATTGA+GGG 0.553509 4_3:+60400424 Msa0652690:CDS
GAGAGGAGAATTGAAACTCT+AGG 0.553809 4_3:+60400071 Msa0652690:CDS
GGGTGAAGCATTCCCTATCT+GGG 0.554975 4_3:-60394711 None:intergenic
CTGTAGGAGTTGGTGCAGCT+AGG 0.560333 4_3:+60395998 Msa0652690:CDS
GGAGAATTGAAACTCTAGGA+AGG 0.560800 4_3:+60400075 Msa0652690:CDS
ACAAGCAGTTCATAAGTCAA+TGG 0.561022 4_3:+60395957 Msa0652690:CDS
AGCAAAATCTGCTCTAGAGA+AGG 0.562179 4_3:+60399258 Msa0652690:CDS
TCGGTGATACCAATCAATAC+AGG 0.562467 4_3:-60394979 None:intergenic
AAGCAAGGTTGGCAGCAGCA+AGG 0.563979 4_3:+60399167 Msa0652690:CDS
GAAGGTGCAACAAAGAGAGA+AGG 0.564197 4_3:+60400181 Msa0652690:CDS
GTATTCTTCAGAGGTGATGA+CGG 0.567793 4_3:+60400741 Msa0652690:exon
ATCCAAAGCCCTTTGGTACA+GGG 0.569599 4_3:-60393340 None:intergenic
GTTTGTGGTCGTGCTCGCCA+GGG 0.569612 4_3:+60392182 Msa0652690:CDS
AGATTGCGGTGACGCATCGG+CGG 0.570325 4_3:-60392003 None:intergenic
AGAACAAGGCCAAAGCAAGT+TGG 0.571365 4_3:+60394937 Msa0652690:CDS
ATTCTATGGAAAAGAGGCTG+AGG 0.571876 4_3:+60398271 Msa0652690:CDS
ATGCCGTGGTTACTGACATA+CGG 0.572365 4_3:+60400835 Msa0652690:three_prime_UTR
GAGAGCAACGGATTCAGAGA+AGG 0.573561 4_3:+60400127 Msa0652690:CDS
ACACATCGACCCTGTACCAA+AGG 0.575105 4_3:+60393331 Msa0652690:CDS
AGTTGCGAAGCTCGAAGAGA+AGG 0.575118 4_3:+60400163 Msa0652690:CDS
GTTGGAGCAACTATGATGAC+AGG 0.575865 4_3:+60394955 Msa0652690:CDS
CTGCAGCTCTTAGGAAGCAG+TGG 0.576573 4_3:+60393289 Msa0652690:intron
AACTGAGAAGATGAAGAAGA+TGG 0.577774 4_3:-60392041 None:intergenic
AAGTACACACAGCCAGAAGA+TGG 0.578688 4_3:+60400542 Msa0652690:CDS
AGCTCAGTCTGCTCAAGAGG+AGG 0.581087 4_3:+60399195 Msa0652690:CDS
CACAGATTGAGAGGGCTGAG+AGG 0.582400 4_3:+60400054 Msa0652690:CDS
GCAGTAGTGCAGCCGAAGCA+AGG 0.584397 4_3:+60399152 Msa0652690:CDS
AGCTGCAAGGGCTACTGAAG+TGG 0.586115 4_3:+60399953 Msa0652690:CDS
TGAGTTCAAAAGATTTGAGG+AGG 0.586772 4_3:+60399899 Msa0652690:CDS
TGCCAGGAGGAAGAAATAGT+AGG 0.587287 4_3:-60395036 None:intergenic
ACAAACAGAAACGACACCGA+TGG 0.587350 4_3:-60392165 None:intergenic
ATGACAGGTCCTGTATTGAT+TGG 0.589135 4_3:+60394970 Msa0652690:CDS
AAAGACTGGCACAGATTGAG+AGG 0.589219 4_3:+60400045 Msa0652690:CDS
CTGAAGTGGCTGATAGAGCA+CGG 0.590845 4_3:+60399967 Msa0652690:CDS
GAGGACCGCACTTGATGGAA+CGG 0.593749 4_3:+60393381 Msa0652690:CDS
AAACAAGCAGACACAGTTGA+GGG 0.594533 4_3:+60399303 Msa0652690:CDS
GTTTCATTTACTCAGATGGG+TGG 0.594616 4_3:+60393808 Msa0652690:intron
TAGCATGTTCATTTACAACC+AGG 0.595059 4_3:+60393619 Msa0652690:CDS
TTTATCAAGGCAGAAAGCTG+AGG 0.595083 4_3:+60399090 Msa0652690:CDS
GAGAATTGAAACTCTAGGAA+GGG 0.595834 4_3:+60400076 Msa0652690:CDS
TTCTCGCTTAAGCTTCGGGA+TGG 0.596156 4_3:-60400636 None:intergenic
TGAAGTGGCTGATAGAGCAC+GGG 0.596582 4_3:+60399968 Msa0652690:CDS
AACAGCCAGTGAGAATATCT+GGG 0.596996 4_3:-60393588 None:intergenic
TCTAGATCTCATTGATGCCG+TGG 0.597767 4_3:+60400821 Msa0652690:three_prime_UTR
AGGGAGAAAGATAATCTGGA+AGG 0.598572 4_3:+60400095 Msa0652690:CDS
TGAGATGCAGAGACTGGCAA+TGG 0.599747 4_3:+60400022 Msa0652690:CDS
CAAACAGAAACGACACCGAT+GGG 0.600094 4_3:-60392164 None:intergenic
TAGACAAGGCGAATAGCTCT+CGG 0.601053 4_3:-60392074 None:intergenic
CAGCTCTTAGGAAGCAGTGG+TGG 0.601493 4_3:+60393292 Msa0652690:intron
AAGCGGCTGGAAGCCAGTGA+AGG 0.601767 4_3:+60398872 Msa0652690:CDS
CTCAAGAGGAGGCTGATGAG+TGG 0.603803 4_3:+60399206 Msa0652690:CDS
AGATTACTCACTTCCTCAGG+TGG 0.604534 4_3:-60395841 None:intergenic
AAATAGTAGGCACGGCACCA+TGG 0.605148 4_3:-60395023 None:intergenic
TTCTATGGAAAAGAGGCTGA+GGG 0.608007 4_3:+60398272 Msa0652690:CDS
TAGGGTTGATAATGTTGCAA+AGG 0.610623 4_3:+60398317 Msa0652690:CDS
TGAAAAGGGAAAGTTCCGTA+TGG 0.611276 4_3:+60392103 Msa0652690:CDS
GCAGCTAGGAAGAAATATGA+AGG 0.611898 4_3:+60396012 Msa0652690:CDS
CTTCTACTATTAGACAGTGA+AGG 0.613868 4_3:+60393412 Msa0652690:CDS
ATTATCATATTGTAGGCCAT+AGG 0.614814 4_3:+60400941 Msa0652690:three_prime_UTR
GGAGGAAGAAATAGTAGGCA+CGG 0.614963 4_3:-60395031 None:intergenic
TGTGGAGCGCACCTTTGAAG+AGG 0.615203 4_3:+60393362 Msa0652690:CDS
TCTGCAGCTACAGTCTGCAC+AGG 0.615853 4_3:+60400328 Msa0652690:CDS
AGGTGAATTGCAGAGAGCAA+CGG 0.618861 4_3:+60400115 Msa0652690:CDS
CAGCACCCAGATATTCTCAC+TGG 0.619533 4_3:+60393583 Msa0652690:CDS
AATGAAATCTGAAAATGCCA+AGG 0.620388 4_3:+60399806 Msa0652690:CDS
TAGCTTGCAATTCAGTAATG+CGG 0.623157 4_3:-60398970 None:intergenic
ATGAGGAATGTATTCTTCAG+AGG 0.626001 4_3:+60400732 Msa0652690:CDS
AGAGCGTGAGGCACATACAC+AGG 0.626998 4_3:+60400280 Msa0652690:CDS
TATCTTGATGCACTCAACCA+TGG 0.627907 4_3:+60395006 Msa0652690:CDS
TAGTCAGCAAGCCAATGAAG+AGG 0.628518 4_3:+60400598 Msa0652690:CDS
TCAAGGCAGAAAGCTGAGGA+AGG 0.628836 4_3:+60399094 Msa0652690:CDS
CGACGGCTTCTGGATCCATA+CGG 0.629966 4_3:-60392118 None:intergenic
AGGCTGCTGAGTCCAAGATA+AGG 0.630324 4_3:+60399727 Msa0652690:intron
ACATACACAGGCAAATAACC+GGG 0.631070 4_3:+60400292 Msa0652690:CDS
CAAACAAGCAGACACAGTTG+AGG 0.634550 4_3:+60399302 Msa0652690:CDS
CAAGGCCCAGTCATATGAGA+GGG 0.637107 4_3:+60399824 Msa0652690:CDS
GACGAGTTGAAGAATAGCGA+CGG 0.639893 4_3:-60392135 None:intergenic
TCTTGAAAAGGTCAAGCACA+GGG 0.640354 4_3:-60398766 None:intergenic
CCAAGGCCCAGTCATATGAG+AGG 0.640589 4_3:+60399823 Msa0652690:CDS
GATGGTGGTTCAATCTATGA+GGG 0.640909 4_3:+60400560 Msa0652690:CDS
CAACTCGTCAAGGAACCCAT+CGG 0.642449 4_3:+60392149 Msa0652690:CDS
AAGCCAAATCATAAGCCCTA+CGG 0.644770 4_3:-60395783 None:intergenic
GTTCTCTTGCCTTACAACGT+CGG 0.646107 4_3:+60398819 Msa0652690:CDS
TGCTGATTCTGTACAAGACA+TGG 0.648072 4_3:+60400463 Msa0652690:CDS
TTCAATCTATGAGGGTGCAG+AGG 0.648196 4_3:+60400568 Msa0652690:CDS
TCAGATGGGTGGTATAGATG+AGG 0.652331 4_3:+60393819 Msa0652690:intron
TGACCGTTCCAAGCCACCTG+AGG 0.652751 4_3:+60395828 Msa0652690:CDS
AGTCCGTATGTCAGTAACCA+CGG 0.654364 4_3:-60400838 None:intergenic
GAGATCTAGACAGACCTAGA+CGG 0.655685 4_3:-60400808 None:intergenic
ATTGTTTAAAGGCCGTACAA+GGG 0.658022 4_3:-60394731 None:intergenic
AGTAAGCTAAAGACAACCGA+TGG 0.658276 4_3:+60400410 Msa0652690:CDS
AGATGACCTTACTGACCAAG+CGG 0.663172 4_3:+60398855 Msa0652690:CDS
TGAAGAAGCAGAGTGCCGTA+GGG 0.666325 4_3:+60395768 Msa0652690:CDS
AAGACTGGCACAGATTGAGA+GGG 0.666890 4_3:+60400046 Msa0652690:CDS
ATTGCGGTGACGCATCGGCG+GGG 0.667360 4_3:-60392001 None:intergenic
TTGAGGGCAGAGAATGACAA+TGG 0.670638 4_3:+60400440 Msa0652690:CDS
TTTGAGTGACTAGAGAAAGA+CGG 0.676465 4_3:-60393852 None:intergenic
ATTCTTCAGAGGTGATGACG+GGG 0.682906 4_3:+60400743 Msa0652690:exon
TTCTTCAGAGGTGATGACGG+GGG 0.683154 4_3:+60400744 Msa0652690:exon
GTACTCCGTTCCATCAAGTG+CGG 0.691482 4_3:-60393386 None:intergenic
TGGATAAAGATAAAACACAC+AGG 0.695749 4_3:+60400219 Msa0652690:CDS
CAAAAGGAATGCATTCATGG+AGG 0.709466 4_3:+60398221 Msa0652690:CDS
TACACACAGCCAGAAGATGG+TGG 0.710446 4_3:+60400545 Msa0652690:CDS
TTTAAAACTAACCTGCCAGG+AGG 0.711712 4_3:-60395049 None:intergenic
GCAAGTTCTAGATAGTCTCG+GGG 0.731190 4_3:-60394138 None:intergenic
AAACTGTCCTATTTCAGACG+CGG 0.731251 4_3:-60393917 None:intergenic
ACAAGGCGAATAGCTCTCGG+TGG 0.744749 4_3:-60392071 None:intergenic
ATACAGAAATATCGTCACTG+AGG 0.776970 4_3:+60399757 Msa0652690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTTTTCAATCA+AGG + chr4_3:60397385-60397404 Msa0652690:intron 10.0%
!! CAGAATTAATAATAAAAAAA+AGG - chr4_3:60397916-60397935 None:intergenic 10.0%
!!! CTTTTTTTTATTATTAATTC+TGG + chr4_3:60397914-60397933 Msa0652690:intron 10.0%
!!! TTTTGCAAAAAAAAAAAAAA+AGG + chr4_3:60398492-60398511 Msa0652690:intron 10.0%
!!! TATTTGTTGATGATTTTTTT+TGG + chr4_3:60392651-60392670 Msa0652690:intron 15.0%
!!! ATTTGTTGATGATTTTTTTT+GGG + chr4_3:60392652-60392671 Msa0652690:intron 15.0%
!!! AATTTTAAAAAAGGTTCATA+AGG - chr4_3:60392873-60392892 None:intergenic 15.0%
!!! ATAGGTTTTTATTCATAATT+GGG + chr4_3:60394389-60394408 Msa0652690:intron 15.0%
!! TAAAAGTTATAAGCATATTA+GGG + chr4_3:60396119-60396138 Msa0652690:intron 15.0%
!!! ACTATTATTTTATCTGTATT+CGG + chr4_3:60396257-60396276 Msa0652690:intron 15.0%
!!! AAACTAATTATTTTGCATAA+GGG - chr4_3:60397611-60397630 None:intergenic 15.0%
!!! TCAAGTCTTTATTTTTAATA+TGG + chr4_3:60398110-60398129 Msa0652690:intron 15.0%
!! AATAATTAATATTGAACAAC+AGG + chr4_3:60398194-60398213 Msa0652690:intron 15.0%
!!! ATATTTTTTTAGGAAAAAGA+TGG - chr4_3:60398723-60398742 None:intergenic 15.0%
!! ACATTATTATTAATTAAGAC+TGG + chr4_3:60401076-60401095 Msa0652690:three_prime_UTR 15.0%
!!! GAATTCTAGTAGATTTTTAT+CGG + chr4_3:60392237-60392256 Msa0652690:intron 20.0%
!!! TTTTATCGGTTTTGAAATTT+AGG + chr4_3:60392251-60392270 Msa0652690:intron 20.0%
!!! TTTATCGGTTTTGAAATTTA+GGG + chr4_3:60392252-60392271 Msa0652690:intron 20.0%
!!! TCGCAGTTAAATTTTAAAAA+AGG - chr4_3:60392882-60392901 None:intergenic 20.0%
!! GATATATATGTAGAACATTA+TGG + chr4_3:60393119-60393138 Msa0652690:intron 20.0%
!!! TTGTTGTTATTATAGATTTG+TGG + chr4_3:60393251-60393270 Msa0652690:intron 20.0%
!!! TACATTTATTTTTACTACAC+AGG + chr4_3:60393553-60393572 Msa0652690:intron 20.0%
!!! ACATTTATTTTTACTACACA+GGG + chr4_3:60393554-60393573 Msa0652690:intron 20.0%
!!! AATTTTTCCTAGGAAAATAT+AGG - chr4_3:60393664-60393683 None:intergenic 20.0%
!!! TTTTCATTATTTCAGAACAT+AGG + chr4_3:60394281-60394300 Msa0652690:intron 20.0%
!!! GATAGGTTTTTATTCATAAT+TGG + chr4_3:60394388-60394407 Msa0652690:intron 20.0%
!!! AGATCATTTTCATTGTTTAA+AGG - chr4_3:60394745-60394764 None:intergenic 20.0%
!! TCTTCGTTTATTAATAACTT+TGG - chr4_3:60395622-60395641 None:intergenic 20.0%
!!! AATATTGGTTTTGTTGTTAT+TGG + chr4_3:60395733-60395752 Msa0652690:intron 20.0%
!! GTAAAAGTTATAAGCATATT+AGG + chr4_3:60396118-60396137 Msa0652690:intron 20.0%
!! TACAGATAAAATAATAGTCA+AGG - chr4_3:60396255-60396274 None:intergenic 20.0%
!! AATAGTCTAAACAAATACAT+TGG - chr4_3:60396376-60396395 None:intergenic 20.0%
!!! GTATTTGTTTAGACTATTTT+TGG + chr4_3:60396378-60396397 Msa0652690:intron 20.0%
!! AGGTTAGCATTAAAAATATT+TGG - chr4_3:60396447-60396466 None:intergenic 20.0%
!! TTCTCAAATAATTATGCAAA+CGG + chr4_3:60397010-60397029 Msa0652690:intron 20.0%
!!! ATTTTGATCTTATAGCTTAT+AGG - chr4_3:60397569-60397588 None:intergenic 20.0%
!!! AACTAATTATTTTGCATAAG+GGG - chr4_3:60397610-60397629 None:intergenic 20.0%
!!! CAAACTAATTATTTTGCATA+AGG - chr4_3:60397612-60397631 None:intergenic 20.0%
!!! TATGCAAAATAATTAGTTTG+TGG + chr4_3:60397612-60397631 Msa0652690:intron 20.0%
!!! ATAATTAGTTTGTGGTATAT+TGG + chr4_3:60397620-60397639 Msa0652690:intron 20.0%
!! AAAATTCCAAATGATAATCA+GGG + chr4_3:60398046-60398065 Msa0652690:intron 20.0%
!! TTAAAAATAAAGACTTGATC+TGG - chr4_3:60398108-60398127 None:intergenic 20.0%
!! GCAAAAAAAAAAAAAAAGGA+TGG + chr4_3:60398496-60398515 Msa0652690:intron 20.0%
!!! CAACAGAAACATATTTTTTT+AGG - chr4_3:60398733-60398752 None:intergenic 20.0%
!! AAACAATATGCAAAAGAAAT+GGG - chr4_3:60399397-60399416 None:intergenic 20.0%
!! TAAACAATATGCAAAAGAAA+TGG - chr4_3:60399398-60399417 None:intergenic 20.0%
! CTAATTACCAATAAATACAC+CGG - chr4_3:60392547-60392566 None:intergenic 25.0%
!! GGTGTATTTATTGGTAATTA+GGG + chr4_3:60392546-60392565 Msa0652690:intron 25.0%
!!! TTTATTGGTAATTAGGGTTT+TGG + chr4_3:60392552-60392571 Msa0652690:intron 25.0%
!! TGATCATTGTAGATTTTTGT+TGG + chr4_3:60392591-60392610 Msa0652690:intron 25.0%
!! GATCATTGTAGATTTTTGTT+GGG + chr4_3:60392592-60392611 Msa0652690:intron 25.0%
!! GAAAAGTTGAATTTTACTCT+TGG - chr4_3:60392990-60393009 None:intergenic 25.0%
! TAGAGATTAATGAGTTGTAT+AGG + chr4_3:60393091-60393110 Msa0652690:intron 25.0%
! AGAGATTAATGAGTTGTATA+GGG + chr4_3:60393092-60393111 Msa0652690:intron 25.0%
! TACAACAATAACAACTAACT+AGG - chr4_3:60393185-60393204 None:intergenic 25.0%
! AATAGATGCTTATGATCAAA+CGG + chr4_3:60393435-60393454 Msa0652690:CDS 25.0%
!! TAACACAAGTAATTTTTCCT+AGG - chr4_3:60393674-60393693 None:intergenic 25.0%
! GAAAAGATGTACAACAAAAA+GGG - chr4_3:60393757-60393776 None:intergenic 25.0%
! AGAAAAGATGTACAACAAAA+AGG - chr4_3:60393758-60393777 None:intergenic 25.0%
!!! TTTTTGTTGTACATCTTTTC+TGG + chr4_3:60393757-60393776 Msa0652690:intron 25.0%
! GTCATGATATTGTAGTTTAA+TGG + chr4_3:60394010-60394029 Msa0652690:intron 25.0%
! TTATATACCTCAATTACTTC+AGG - chr4_3:60394241-60394260 None:intergenic 25.0%
! ATCCTTTACAAAATTATCCT+AGG - chr4_3:60394350-60394369 None:intergenic 25.0%
! AACAAATCAATTAAACTAGC+AGG - chr4_3:60394425-60394444 None:intergenic 25.0%
! ACAAATAGAATGATTCAAAG+TGG - chr4_3:60394547-60394566 None:intergenic 25.0%
!! CATGCATTTTCAAAAAAGTT+TGG - chr4_3:60394573-60394592 None:intergenic 25.0%
! TTTACAGCACATTGAAAAAT+TGG + chr4_3:60394602-60394621 Msa0652690:intron 25.0%
!!! AGTTTGTTTTTGAAAGAACA+AGG + chr4_3:60394923-60394942 Msa0652690:CDS 25.0%
! TCATTAAGATTATCCTATCA+AGG + chr4_3:60395185-60395204 Msa0652690:intron 25.0%
!!! GATCATTTTATTTCCTTGAT+AGG - chr4_3:60395201-60395220 None:intergenic 25.0%
! TCGTATCAAATAATGTATAG+CGG - chr4_3:60395356-60395375 None:intergenic 25.0%
! AACACTTGATCACATTAAAA+GGG - chr4_3:60395553-60395572 None:intergenic 25.0%
!! AAAAATAGTTTTCCAGAGTT+CGG + chr4_3:60395669-60395688 Msa0652690:intron 25.0%
! AAAATGTAAGTCAACAATCT+CGG + chr4_3:60395697-60395716 Msa0652690:intron 25.0%
! TTGGTGAAAAATATCTTGTT+TGG + chr4_3:60396397-60396416 Msa0652690:intron 25.0%
!! TAACCTTTTAAACCTGAAAT+TGG + chr4_3:60396461-60396480 Msa0652690:intron 25.0%
!! AACCTTTTAAACCTGAAATT+GGG + chr4_3:60396462-60396481 Msa0652690:intron 25.0%
!! AATTTAAAATCCCCAATTTC+AGG - chr4_3:60396476-60396495 None:intergenic 25.0%
!!! TTAAATTTCACGCTTTTTGA+AGG + chr4_3:60396489-60396508 Msa0652690:intron 25.0%
! AAGAACATTTATTGTCTATC+AGG - chr4_3:60396699-60396718 None:intergenic 25.0%
! ATAGTTGATTGAGATCATTA+TGG - chr4_3:60396820-60396839 None:intergenic 25.0%
! TGCATAATTATTTGAGAAGA+AGG - chr4_3:60397008-60397027 None:intergenic 25.0%
! TCTCAAATAATTATGCAAAC+GGG + chr4_3:60397011-60397030 Msa0652690:intron 25.0%
!! CAAACGGGATATTTTATAAA+TGG + chr4_3:60397026-60397045 Msa0652690:intron 25.0%
! GAAGTTAATCACATAATTGT+CGG + chr4_3:60397118-60397137 Msa0652690:intron 25.0%
!!! TTTTTTTCAATCAAGGTTAC+AGG + chr4_3:60397392-60397411 Msa0652690:intron 25.0%
!!! TTTTTTCAATCAAGGTTACA+GGG + chr4_3:60397393-60397412 Msa0652690:intron 25.0%
! ATAAGCTCATTTGACTAAAA+AGG - chr4_3:60397537-60397556 None:intergenic 25.0%
! GTATATTGGAGTGATTATTA+TGG + chr4_3:60397634-60397653 Msa0652690:intron 25.0%
!! ACCATATCATTTTCAAATAC+AGG - chr4_3:60397690-60397709 None:intergenic 25.0%
! TTACATTTCAAATGAGACAT+AGG + chr4_3:60397743-60397762 Msa0652690:intron 25.0%
! ATATTGCACATATAAGAATC+AGG - chr4_3:60397868-60397887 None:intergenic 25.0%
! ACCCTGTTATAGTATATTTA+GGG + chr4_3:60398023-60398042 Msa0652690:intron 25.0%
! TCCCTAAATATACTATAACA+GGG - chr4_3:60398027-60398046 None:intergenic 25.0%
! TTCCCTAAATATACTATAAC+AGG - chr4_3:60398028-60398047 None:intergenic 25.0%
! GAAAATTCCAAATGATAATC+AGG + chr4_3:60398045-60398064 Msa0652690:intron 25.0%
!!! CTGTGAAGTTTTTTTTTTTG+TGG + chr4_3:60398669-60398688 Msa0652690:intron 25.0%
! AAAAAGATGGAAAAAAAGAC+CGG - chr4_3:60398710-60398729 None:intergenic 25.0%
! TAATTTCTTCTTATCGTTGA+TGG - chr4_3:60398933-60398952 None:intergenic 25.0%
!!! TTCTAGCTTATTGAAAACAT+TGG + chr4_3:60399018-60399037 Msa0652690:CDS 25.0%
!! ATATTTTCTTTTCCAATCCA+TGG - chr4_3:60399062-60399081 None:intergenic 25.0%
! TTGGAAAAGAAAATATGAAC+AGG + chr4_3:60399066-60399085 Msa0652690:CDS 25.0%
!!! AATATGAACAGGTTTTATCA+AGG + chr4_3:60399077-60399096 Msa0652690:CDS 25.0%
!!! AGAGTTGAAGGTAATTTTTT+TGG + chr4_3:60399560-60399579 Msa0652690:intron 25.0%
!!! ATATGACAAACTCTCTTTTT+TGG + chr4_3:60399657-60399676 Msa0652690:intron 25.0%
!!! CTTTTTTGGTGTGTTTATTT+CGG + chr4_3:60399671-60399690 Msa0652690:intron 25.0%
!!! TTTAACTTCTTTTTTCTGTG+TGG + chr4_3:60400877-60400896 Msa0652690:three_prime_UTR 25.0%
! AGCAATGATTATCATATTGT+AGG + chr4_3:60400934-60400953 Msa0652690:three_prime_UTR 25.0%
!!! TAATTAAGACTGGTCTTTTA+CGG + chr4_3:60401086-60401105 Msa0652690:three_prime_UTR 25.0%
! AACAGATCAAATAGATAGAT+AGG - chr4_3:60401117-60401136 None:intergenic 25.0%
!!! TTTCGCTTTTTTTCTCTTTG+GGG - chr4_3:60391920-60391939 None:intergenic 30.0%
!!! CTTTCGCTTTTTTTCTCTTT+GGG - chr4_3:60391921-60391940 None:intergenic 30.0%
!!! ACTTTCGCTTTTTTTCTCTT+TGG - chr4_3:60391922-60391941 None:intergenic 30.0%
! CAATTTGTTTAACCGAAACA+AGG + chr4_3:60391974-60391993 Msa0652690:CDS 30.0%
AAAAAGCTATATCTTGAACC+AGG + chr4_3:60392205-60392224 Msa0652690:CDS 30.0%
!!! GGTTTTGAAATTTAGGGTTT+TGG + chr4_3:60392258-60392277 Msa0652690:intron 30.0%
! TTTCTTCGTAATTAGGGTTT+TGG + chr4_3:60392285-60392304 Msa0652690:intron 30.0%
! CGGTGTATTTATTGGTAATT+AGG + chr4_3:60392545-60392564 Msa0652690:intron 30.0%
! GTAGATTTTTGTTGGGTTTA+TGG + chr4_3:60392599-60392618 Msa0652690:intron 30.0%
! ATCTAGTTGTTGGATTGTTT+TGG + chr4_3:60392762-60392781 Msa0652690:intron 30.0%
! TCTAGTTGTTGGATTGTTTT+GGG + chr4_3:60392763-60392782 Msa0652690:intron 30.0%
TATACAATTCCAACTTATCC+CGG - chr4_3:60392922-60392941 None:intergenic 30.0%
TGCTACAGTAATTATACAAG+CGG - chr4_3:60393012-60393031 None:intergenic 30.0%
! GTTACTCTGATAGTTTTTCT+AGG - chr4_3:60393057-60393076 None:intergenic 30.0%
AGGAAAATATAGGTCTTGAT+AGG - chr4_3:60393654-60393673 None:intergenic 30.0%
! ATCAAGACCTATATTTTCCT+AGG + chr4_3:60393654-60393673 Msa0652690:intron 30.0%
!!! TTGTTTTGATATTCCATGAC+CGG + chr4_3:60393698-60393717 Msa0652690:intron 30.0%
TGATGTTTCATTTACTCAGA+TGG + chr4_3:60393804-60393823 Msa0652690:intron 30.0%
GATGTTTCATTTACTCAGAT+GGG + chr4_3:60393805-60393824 Msa0652690:intron 30.0%
! AGTTTTCCCCAATTTTTGTT+TGG + chr4_3:60393935-60393954 Msa0652690:CDS 30.0%
TAAGAGCCAAACAAAAATTG+GGG - chr4_3:60393944-60393963 None:intergenic 30.0%
GTAAGAGCCAAACAAAAATT+GGG - chr4_3:60393945-60393964 None:intergenic 30.0%
!!! CAATTTTTGTTTGGCTCTTA+CGG + chr4_3:60393944-60393963 Msa0652690:CDS 30.0%
!!! AATTTTTGTTTGGCTCTTAC+GGG + chr4_3:60393945-60393964 Msa0652690:CDS 30.0%
TTACGAACCATTGCAAATAT+TGG + chr4_3:60393972-60393991 Msa0652690:intron 30.0%
GCACTATTTGTGAATAATCT+TGG + chr4_3:60394067-60394086 Msa0652690:intron 30.0%
CTATTTGTGAATAATCTTGG+TGG + chr4_3:60394070-60394089 Msa0652690:intron 30.0%
TACTTCAGGAATGACAAATT+AGG - chr4_3:60394227-60394246 None:intergenic 30.0%
! GACCTAGGATAATTTTGTAA+AGG + chr4_3:60394345-60394364 Msa0652690:intron 30.0%
ATGAATAAAAACCTATCCGA+GGG - chr4_3:60394385-60394404 None:intergenic 30.0%
TATGAATAAAAACCTATCCG+AGG - chr4_3:60394386-60394405 None:intergenic 30.0%
ATTAAACTAGCAGGCATAAT+GGG - chr4_3:60394416-60394435 None:intergenic 30.0%
AATTAAACTAGCAGGCATAA+TGG - chr4_3:60394417-60394436 None:intergenic 30.0%
! AGTGGCAATTTTACAGATTT+TGG - chr4_3:60394473-60394492 None:intergenic 30.0%
AAAAGTTACTCACTGATATC+TGG - chr4_3:60394780-60394799 None:intergenic 30.0%
AAAATGTCTGCAAAAGAGTA+TGG - chr4_3:60394816-60394835 None:intergenic 30.0%
!! TTTTGCTTTAAATACGCAGT+CGG + chr4_3:60394855-60394874 Msa0652690:intron 30.0%
TGAATATCTCTTCGAAATTC+AGG - chr4_3:60394892-60394911 None:intergenic 30.0%
AATGAAATGAGAAAGTCCAA+CGG - chr4_3:60395170-60395189 None:intergenic 30.0%
AACAACATTGAAGGAAATTG+TGG - chr4_3:60395287-60395306 None:intergenic 30.0%
! CTGCTATTTAACAACATTGA+AGG - chr4_3:60395296-60395315 None:intergenic 30.0%
ATCGTGGATCATGAAAAATA+TGG - chr4_3:60395436-60395455 None:intergenic 30.0%
GTGATTCAAAAGATCAATCA+AGG - chr4_3:60395516-60395535 None:intergenic 30.0%
GAACACTTGATCACATTAAA+AGG - chr4_3:60395554-60395573 None:intergenic 30.0%
AGAACCAAATTATCATGCAA+AGG + chr4_3:60395639-60395658 Msa0652690:intron 30.0%
AATGCCTTTGCATGATAATT+TGG - chr4_3:60395646-60395665 None:intergenic 30.0%
!! TTTGGCTTCTGAAGTTTATA+TGG + chr4_3:60395798-60395817 Msa0652690:CDS 30.0%
AAACAGTGCAGTCAAAATTA+AGG - chr4_3:60395909-60395928 None:intergenic 30.0%
GCTTCAGAAATTCATCAAAA+AGG + chr4_3:60396038-60396057 Msa0652690:CDS 30.0%
!! TTCTTTTTGTTTAGACTGCA+AGG + chr4_3:60396189-60396208 Msa0652690:intron 30.0%
!! TCTTTTTGTTTAGACTGCAA+GGG + chr4_3:60396190-60396209 Msa0652690:intron 30.0%
GATAATTGACTGTTCAAAGT+AGG + chr4_3:60396304-60396323 Msa0652690:intron 30.0%
! ACCTTTTAAACCTGAAATTG+GGG + chr4_3:60396463-60396482 Msa0652690:intron 30.0%
ATTATCCTTTGTGCCAATTT+GGG + chr4_3:60396631-60396650 Msa0652690:intron 30.0%
TGATTGAGATCATTATGGAA+TGG - chr4_3:60396815-60396834 None:intergenic 30.0%
AATCATAGTGACAAAACATC+GGG - chr4_3:60396925-60396944 None:intergenic 30.0%
CAATCATAGTGACAAAACAT+CGG - chr4_3:60396926-60396945 None:intergenic 30.0%
TGATGTTACTATGATGTGTT+TGG - chr4_3:60397098-60397117 None:intergenic 30.0%
!! TTTTTCAATCAAGGTTACAG+GGG + chr4_3:60397394-60397413 Msa0652690:intron 30.0%
ATGATATGCTATAAGCTACT+TGG + chr4_3:60397434-60397453 Msa0652690:intron 30.0%
AAAAATAAGCAATAAGCTCG+TGG + chr4_3:60397487-60397506 Msa0652690:intron 30.0%
GCCTGTATTTGAAAATGATA+TGG + chr4_3:60397686-60397705 Msa0652690:intron 30.0%
TGATGCAAAAGAAGAATTTC+TGG + chr4_3:60397967-60397986 Msa0652690:intron 30.0%
CACCCTGTTATAGTATATTT+AGG + chr4_3:60398022-60398041 Msa0652690:intron 30.0%
!! AAATATTTGTGCCACTTTCT+TGG + chr4_3:60398136-60398155 Msa0652690:intron 30.0%
TTGAACAACAGGATTACAAA+AGG + chr4_3:60398205-60398224 Msa0652690:intron 30.0%
TTACAAAAGGAATGCATTCA+TGG + chr4_3:60398218-60398237 Msa0652690:CDS 30.0%
TTCAAATGCCATACATTCTA+TGG + chr4_3:60398257-60398276 Msa0652690:CDS 30.0%
CCAACAAAATGAATGAATGA+AGG - chr4_3:60398383-60398402 None:intergenic 30.0%
! CCTTCATTCATTCATTTTGT+TGG + chr4_3:60398380-60398399 Msa0652690:intron 30.0%
CAAAGATAAAATATCCAACC+TGG - chr4_3:60398539-60398558 None:intergenic 30.0%
GAATATGAAAAGTCCATTCA+AGG + chr4_3:60398586-60398605 Msa0652690:CDS 30.0%
!!! GTTTCTGTTGATAGTTTTGA+AGG + chr4_3:60398743-60398762 Msa0652690:intron 30.0%
TATCTATTACCCTCTTGAAA+AGG - chr4_3:60398781-60398800 None:intergenic 30.0%
AATATGCAAAAGAAATGGGT+GGG - chr4_3:60399393-60399412 None:intergenic 30.0%
! GACTTATTTGCTAATTATGC+AGG + chr4_3:60399470-60399489 Msa0652690:intron 30.0%
!! AACTCTGAAATTAGAGTTGA+AGG + chr4_3:60399548-60399567 Msa0652690:CDS 30.0%
TGTATCATAACTCCTTATCT+TGG - chr4_3:60399742-60399761 None:intergenic 30.0%
AATGAAATCTGAAAATGCCA+AGG + chr4_3:60399806-60399825 Msa0652690:CDS 30.0%
! CAAATCTTTTGAACTCAGAT+TGG - chr4_3:60399896-60399915 None:intergenic 30.0%
ATCTGAGTTCAAAAGATTTG+AGG + chr4_3:60399896-60399915 Msa0652690:CDS 30.0%
TGGATAAAGATAAAACACAC+AGG + chr4_3:60400219-60400238 Msa0652690:CDS 30.0%
! TCAGATTCTTGAACAACTTT+TGG + chr4_3:60400253-60400272 Msa0652690:CDS 30.0%
GTTTCGAATGAATGAAACAT+TGG + chr4_3:60400385-60400404 Msa0652690:CDS 30.0%
GAACTGACAAAACATAACTT+TGG + chr4_3:60400656-60400675 Msa0652690:CDS 30.0%
! CAAAACATAACTTTGGTGAT+CGG + chr4_3:60400663-60400682 Msa0652690:CDS 30.0%
ATTATCATATTGTAGGCCAT+AGG + chr4_3:60400941-60400960 Msa0652690:three_prime_UTR 30.0%
!! TTTTGATGGCACGATTTTAT+TGG + chr4_3:60400967-60400986 Msa0652690:three_prime_UTR 30.0%
ATAATGTAGCTCGTCTAATA+TGG - chr4_3:60401063-60401082 None:intergenic 30.0%
AACTGAGAAGATGAAGAAGA+TGG - chr4_3:60392044-60392063 None:intergenic 35.0%
!! TCAAGATATAGCTTTTTCCC+TGG - chr4_3:60392202-60392221 None:intergenic 35.0%
CTAGAATTCGAAAAATCACC+TGG - chr4_3:60392226-60392245 None:intergenic 35.0%
TGGTGTCTTTCTTCGTAATT+AGG + chr4_3:60392278-60392297 Msa0652690:intron 35.0%
GGTGTCTTTCTTCGTAATTA+GGG + chr4_3:60392279-60392298 Msa0652690:intron 35.0%
!! TTCGTAATTAGGGTTTTGGT+TGG + chr4_3:60392289-60392308 Msa0652690:intron 35.0%
!!! TCGTAATTAGGGTTTTGGTT+GGG + chr4_3:60392290-60392309 Msa0652690:intron 35.0%
AAAGAGCAACTTTCTGATTG+CGG - chr4_3:60392465-60392484 None:intergenic 35.0%
AAACTTGTATGCTTGTGCAT+CGG + chr4_3:60392491-60392510 Msa0652690:intron 35.0%
!!! TGAAGTTCAGGGTTTTAGTT+TGG + chr4_3:60392517-60392536 Msa0652690:intron 35.0%
!!! AGGGTTTTAGTTTGGATTTC+CGG + chr4_3:60392525-60392544 Msa0652690:intron 35.0%
TGGATTTCCGGTGTATTTAT+TGG + chr4_3:60392537-60392556 Msa0652690:intron 35.0%
CTACAATGATCACACTGAAT+GGG - chr4_3:60392583-60392602 None:intergenic 35.0%
TCTACAATGATCACACTGAA+TGG - chr4_3:60392584-60392603 None:intergenic 35.0%
!! TTTTGGGAGTAATGTGTGTT+AGG + chr4_3:60392668-60392687 Msa0652690:intron 35.0%
AAGCAAACGAATCTAGTTGT+TGG + chr4_3:60392752-60392771 Msa0652690:intron 35.0%
AAAAAACCACATACTCGTTG+TGG - chr4_3:60392810-60392829 None:intergenic 35.0%
AATTTAACTGCGAAGTTCAG+TGG + chr4_3:60392889-60392908 Msa0652690:intron 35.0%
TTACTGTAGCAAGTTACTAG+AGG + chr4_3:60393021-60393040 Msa0652690:intron 35.0%
AACAACAAAAAGCAGCAACA+AGG - chr4_3:60393236-60393255 None:intergenic 35.0%
CTTCTACTATTAGACAGTGA+AGG + chr4_3:60393412-60393431 Msa0652690:CDS 35.0%
TAGCATGTTCATTTACAACC+AGG + chr4_3:60393619-60393638 Msa0652690:CDS 35.0%
ATGTTCATTTACAACCAGGT+TGG + chr4_3:60393623-60393642 Msa0652690:intron 35.0%
TTTGAGTGACTAGAGAAAGA+CGG - chr4_3:60393855-60393874 None:intergenic 35.0%
CGTAAGAGCCAAACAAAAAT+TGG - chr4_3:60393946-60393965 None:intergenic 35.0%
CTGTCTTCCAATATTTGCAA+TGG - chr4_3:60393982-60394001 None:intergenic 35.0%
TGCAAATATTGGAAGACAGT+AGG + chr4_3:60393983-60394002 Msa0652690:intron 35.0%
!! AAGCAAGTTCTAGATAGTCT+CGG - chr4_3:60394143-60394162 None:intergenic 35.0%
! ACTATCTAGAACTTGCTTTG+CGG + chr4_3:60394145-60394164 Msa0652690:CDS 35.0%
TGTCATTCCTGAAGTAATTG+AGG + chr4_3:60394231-60394250 Msa0652690:intron 35.0%
TCAGAACATAGGAGTTAGAA+TGG + chr4_3:60394292-60394311 Msa0652690:intron 35.0%
!!! TGTAGTGTCAGTTTTGGTTT+AGG - chr4_3:60394448-60394467 None:intergenic 35.0%
! GTAAAATTGCCACTTGAATC+TGG + chr4_3:60394479-60394498 Msa0652690:intron 35.0%
!! AAGAGTATTCCAGATTCAAG+TGG - chr4_3:60394491-60394510 None:intergenic 35.0%
ATTGTTTAAAGGCCGTACAA+GGG - chr4_3:60394734-60394753 None:intergenic 35.0%
GAGTGCATCAAGATAAGATT+CGG - chr4_3:60395001-60395020 None:intergenic 35.0%
!!! TGTTTTAAAACTAACCTGCC+AGG - chr4_3:60395055-60395074 None:intergenic 35.0%
!!! TCGTCACTGATTCACTTTTA+AGG - chr4_3:60395129-60395148 None:intergenic 35.0%
AAAAGTGAATCAGTGACGAA+TGG + chr4_3:60395130-60395149 Msa0652690:intron 35.0%
!!! GGATGTTATATTTTGACCGT+TGG + chr4_3:60395151-60395170 Msa0652690:intron 35.0%
TAAAGAACTTCCTCCAATTG+CGG - chr4_3:60395492-60395511 None:intergenic 35.0%
!! GGCTTTAGTTTGCTCAATAT+TGG + chr4_3:60395718-60395737 Msa0652690:intron 35.0%
!! TTTTGACTGCACTGTTTTGT+AGG + chr4_3:60395912-60395931 Msa0652690:intron 35.0%
ACAAGCAGTTCATAAGTCAA+TGG + chr4_3:60395957-60395976 Msa0652690:CDS 35.0%
ATTCATCAAAAAGGCTTTCG+AGG + chr4_3:60396047-60396066 Msa0652690:CDS 35.0%
!! CTTTTTGTTTAGACTGCAAG+GGG + chr4_3:60396191-60396210 Msa0652690:intron 35.0%
GAGCAAAAAATAAGCGTGTT+TGG + chr4_3:60396332-60396351 Msa0652690:intron 35.0%
!! TCCCCAATTTCAGGTTTAAA+AGG - chr4_3:60396467-60396486 None:intergenic 35.0%
GATTATCCTTTGTGCCAATT+TGG + chr4_3:60396630-60396649 Msa0652690:intron 35.0%
TGGGACTCAAAAATGCAATT+CGG - chr4_3:60396868-60396887 None:intergenic 35.0%
! CGATGTTTTGTCACTATGAT+TGG + chr4_3:60396924-60396943 Msa0652690:intron 35.0%
! TGTTTTGTCACTATGATTGG+TGG + chr4_3:60396927-60396946 Msa0652690:intron 35.0%
AATTCTCTCAACAGAACTAG+AGG - chr4_3:60397153-60397172 None:intergenic 35.0%
AACAGACATGTAAACTACTC+AGG + chr4_3:60397193-60397212 Msa0652690:intron 35.0%
ACAGACATGTAAACTACTCA+GGG + chr4_3:60397194-60397213 Msa0652690:intron 35.0%
AGGGACATCTTGAATTTCTT+TGG + chr4_3:60397213-60397232 Msa0652690:intron 35.0%
GCTGATAAGCTAACTTATAG+TGG + chr4_3:60397252-60397271 Msa0652690:intron 35.0%
!! TTATAGTGGATAGCTGATAG+CGG + chr4_3:60397266-60397285 Msa0652690:intron 35.0%
CTGATTGAATTTGCAGTGTT+TGG + chr4_3:60397298-60397317 Msa0652690:intron 35.0%
! TTTTGCATAAGGGGTCTATT+TGG - chr4_3:60397601-60397620 None:intergenic 35.0%
TGGAGTGATTATTATGGCAA+AGG + chr4_3:60397640-60397659 Msa0652690:intron 35.0%
TTATGGCAAAGGATATAAGC+AGG + chr4_3:60397651-60397670 Msa0652690:intron 35.0%
TATGGCAAAGGATATAAGCA+GGG + chr4_3:60397652-60397671 Msa0652690:intron 35.0%
!! TGGTTTGCTGTTTGTTACTT+TGG + chr4_3:60397706-60397725 Msa0652690:intron 35.0%
!! CTGTTTGTTACTTTGGAAGA+TGG + chr4_3:60397713-60397732 Msa0652690:intron 35.0%
!! TGTTACTTTGGAAGATGGTA+TGG + chr4_3:60397718-60397737 Msa0652690:intron 35.0%
CATTTCAAATGAGACATAGG+AGG + chr4_3:60397746-60397765 Msa0652690:intron 35.0%
GAGACATAGGAGGTAAATTA+AGG + chr4_3:60397756-60397775 Msa0652690:intron 35.0%
ACAGAAGGACTATTGATGAA+TGG - chr4_3:60397801-60397820 None:intergenic 35.0%
ATCAATAGTCCTTCTGTTTC+TGG + chr4_3:60397804-60397823 Msa0652690:intron 35.0%
TTTGGAGGTTATGATGTGAA+TGG + chr4_3:60397831-60397850 Msa0652690:intron 35.0%
TAATTCTGGCAAACATCATG+TGG + chr4_3:60397928-60397947 Msa0652690:intron 35.0%
!! TGGCTTTAACAAACCTAACT+TGG + chr4_3:60397987-60398006 Msa0652690:intron 35.0%
! CCTCTTTTCCATAGAATGTA+TGG - chr4_3:60398268-60398287 None:intergenic 35.0%
CCATACATTCTATGGAAAAG+AGG + chr4_3:60398265-60398284 Msa0652690:CDS 35.0%
TTGTAATGCTTCTGATGCTA+GGG + chr4_3:60398299-60398318 Msa0652690:CDS 35.0%
!! TAGGGTTGATAATGTTGCAA+AGG + chr4_3:60398317-60398336 Msa0652690:CDS 35.0%
! TATCTTGTTTGAAACCCGAA+AGG + chr4_3:60398414-60398433 Msa0652690:intron 35.0%
! ATCTTGTTTGAAACCCGAAA+GGG + chr4_3:60398415-60398434 Msa0652690:intron 35.0%
!!! TCTTGTTTTCTTTCCCCTTT+CGG - chr4_3:60398432-60398451 None:intergenic 35.0%
! GGATATTTTATCTTTGACGC+AGG + chr4_3:60398543-60398562 Msa0652690:intron 35.0%
!!! GCAAGTTTTTTCCATTTTCC+AGG - chr4_3:60398613-60398632 None:intergenic 35.0%
!!! TTTTTTGTGGTTGAGAGTAG+TGG + chr4_3:60398682-60398701 Msa0652690:intron 35.0%
! TAGCTTGCAATTCAGTAATG+CGG - chr4_3:60398973-60398992 None:intergenic 35.0%
CAATATGCAAAAGAAATGGG+TGG - chr4_3:60399394-60399413 None:intergenic 35.0%
CCAAGTTTGCAAGGAATTAT+GGG - chr4_3:60399445-60399464 None:intergenic 35.0%
CCATAATTCCTTGCAAACTT+GGG + chr4_3:60399443-60399462 Msa0652690:intron 35.0%
! TGTTTATTTCGGTCTTTTCG+AGG + chr4_3:60399682-60399701 Msa0652690:intron 35.0%
AATATTGTGCTTGTACTTGC+AGG + chr4_3:60399707-60399726 Msa0652690:intron 35.0%
ATACAGAAATATCGTCACTG+AGG + chr4_3:60399757-60399776 Msa0652690:CDS 35.0%
TGAGTTCAAAAGATTTGAGG+AGG + chr4_3:60399899-60399918 Msa0652690:CDS 35.0%
! GAGAATTGAAACTCTAGGAA+GGG + chr4_3:60400076-60400095 Msa0652690:CDS 35.0%
! TTGATGTAGGGAGTCAATTT+TGG - chr4_3:60400354-60400373 None:intergenic 35.0%
! ATGCAAGCCCTAGATTTTTA+AGG + chr4_3:60400486-60400505 Msa0652690:CDS 35.0%
! TGCAAGCCCTAGATTTTTAA+GGG + chr4_3:60400487-60400506 Msa0652690:CDS 35.0%
TAGCTCCCCTTAAAAATCTA+GGG - chr4_3:60400496-60400515 None:intergenic 35.0%
TTAGCTCCCCTTAAAAATCT+AGG - chr4_3:60400497-60400516 None:intergenic 35.0%
CTTTGTATGATCCTCTTCAT+TGG - chr4_3:60400612-60400631 None:intergenic 35.0%
GCAACAAGATCTTTCTTCAT+GGG - chr4_3:60400707-60400726 None:intergenic 35.0%
AGCAACAAGATCTTTCTTCA+TGG - chr4_3:60400708-60400727 None:intergenic 35.0%
ATGAGGAATGTATTCTTCAG+AGG + chr4_3:60400732-60400751 Msa0652690:CDS 35.0%
!! TTCTGTGTGGTTTTGCATAT+TGG + chr4_3:60400890-60400909 Msa0652690:three_prime_UTR 35.0%
TCTTCATCTTCTCAGTTCAC+CGG + chr4_3:60392047-60392066 Msa0652690:CDS 40.0%
CTTGTCTACTGCGATGAAAA+GGG + chr4_3:60392089-60392108 Msa0652690:CDS 40.0%
TGAAAAGGGAAAGTTCCGTA+TGG + chr4_3:60392103-60392122 Msa0652690:CDS 40.0%
!!! TAGGGTTTTGGTTGGGATTA+TGG + chr4_3:60392297-60392316 Msa0652690:intron 40.0%
GCAATCAGAAAGTTGCTCTT+TGG + chr4_3:60392464-60392483 Msa0652690:intron 40.0%
!!! TGCATCGGTTTTGAAGTTCA+GGG + chr4_3:60392506-60392525 Msa0652690:intron 40.0%
GAAGTTCAGTGGCTAATTTC+CGG + chr4_3:60392900-60392919 Msa0652690:intron 40.0%
AAGTTCAGTGGCTAATTTCC+GGG + chr4_3:60392901-60392920 Msa0652690:intron 40.0%
!!! TTTTTTGCACTGCAGCTCTT+AGG + chr4_3:60393280-60393299 Msa0652690:intron 40.0%
AACAGCCAGTGAGAATATCT+GGG - chr4_3:60393591-60393610 None:intergenic 40.0%
!! ATATTCCATGACCGGTTTGT+GGG + chr4_3:60393706-60393725 Msa0652690:intron 40.0%
GTTTCATTTACTCAGATGGG+TGG + chr4_3:60393808-60393827 Msa0652690:intron 40.0%
CATATTCGTGTTAGAGCTTC+TGG + chr4_3:60393883-60393902 Msa0652690:CDS 40.0%
AAACTGTCCTATTTCAGACG+CGG - chr4_3:60393920-60393939 None:intergenic 40.0%
! TTGTGAATAATCTTGGTGGC+AGG + chr4_3:60394074-60394093 Msa0652690:intron 40.0%
!! AGCAAGTTCTAGATAGTCTC+GGG - chr4_3:60394142-60394161 None:intergenic 40.0%
CGATGTAGCTGCTAAAAATG+AGG + chr4_3:60394188-60394207 Msa0652690:CDS 40.0%
CATAGGAGTTAGAATGGCAT+AGG + chr4_3:60394298-60394317 Msa0652690:intron 40.0%
GGATGCGAATAATAATCCCT+CGG + chr4_3:60394366-60394385 Msa0652690:intron 40.0%
CGAATAATAATCCCTCGGAT+AGG + chr4_3:60394371-60394390 Msa0652690:intron 40.0%
! TTGGTGTGTAGTGTCAGTTT+TGG - chr4_3:60394454-60394473 None:intergenic 40.0%
AGAAAGTTAGCAACTCCAGA+GGG - chr4_3:60394647-60394666 None:intergenic 40.0%
CATTGTTTAAAGGCCGTACA+AGG - chr4_3:60394735-60394754 None:intergenic 40.0%
TGAAAATGATCTACAGCGAC+TGG + chr4_3:60394753-60394772 Msa0652690:CDS 40.0%
! CTGCAAAAGAGTATGGTACA+TGG - chr4_3:60394809-60394828 None:intergenic 40.0%
! ATAGTTGCTCCAACTTGCTT+TGG - chr4_3:60394949-60394968 None:intergenic 40.0%
! ATGACAGGTCCTGTATTGAT+TGG + chr4_3:60394970-60394989 Msa0652690:CDS 40.0%
TCGGTGATACCAATCAATAC+AGG - chr4_3:60394982-60395001 None:intergenic 40.0%
TATCTTGATGCACTCAACCA+TGG + chr4_3:60395006-60395025 Msa0652690:CDS 40.0%
! TTTAAAACTAACCTGCCAGG+AGG - chr4_3:60395052-60395071 None:intergenic 40.0%
!! TACGAAGCACTGTCAAATTG+TGG + chr4_3:60395371-60395390 Msa0652690:intron 40.0%
CGGACTAAATATCCACATCA+AGG - chr4_3:60395472-60395491 None:intergenic 40.0%
GTGGATATTTAGTCCGCAAT+TGG + chr4_3:60395476-60395495 Msa0652690:intron 40.0%
GATATTTAGTCCGCAATTGG+AGG + chr4_3:60395479-60395498 Msa0652690:intron 40.0%
! ACATTTTTCGTTCCGAACTC+TGG - chr4_3:60395684-60395703 None:intergenic 40.0%
AAGCCAAATCATAAGCCCTA+CGG - chr4_3:60395786-60395805 None:intergenic 40.0%
GATAGATTACTCACTTCCTC+AGG - chr4_3:60395847-60395866 None:intergenic 40.0%
!! TGTTTTGTAGGTCGCTTTGA+TGG + chr4_3:60395924-60395943 Msa0652690:intron 40.0%
! GCTTTTAATGCTAGTGCTGT+AGG + chr4_3:60395982-60396001 Msa0652690:CDS 40.0%
GCAGCTAGGAAGAAATATGA+AGG + chr4_3:60396012-60396031 Msa0652690:CDS 40.0%
TGAGAGATGGAAGTTTGACA+GGG - chr4_3:60396528-60396547 None:intergenic 40.0%
ATGAGAGATGGAAGTTTGAC+AGG - chr4_3:60396529-60396548 None:intergenic 40.0%
CGTCTATCTATCATGAGAGA+TGG - chr4_3:60396541-60396560 None:intergenic 40.0%
TAATCAAACCTGAGACCTTG+AGG - chr4_3:60396615-60396634 None:intergenic 40.0%
CTAAATTAGCCCACCCAAAT+TGG - chr4_3:60396647-60396666 None:intergenic 40.0%
GAATGGCTACAGAAGGAAAT+AGG - chr4_3:60396798-60396817 None:intergenic 40.0%
CATTATGGAATGGCTACAGA+AGG - chr4_3:60396805-60396824 None:intergenic 40.0%
GGGACTCAAAAATGCAATTC+GGG - chr4_3:60396867-60396886 None:intergenic 40.0%
CTTGACAAAGTCACTCAGTT+GGG - chr4_3:60396887-60396906 None:intergenic 40.0%
ACTTGACAAAGTCACTCAGT+TGG - chr4_3:60396888-60396907 None:intergenic 40.0%
! GTGACTTTGTCAAGTTTGCT+TGG + chr4_3:60396893-60396912 Msa0652690:intron 40.0%
! TTTTCTCTGATCACTCAGAG+TGG + chr4_3:60396971-60396990 Msa0652690:intron 40.0%
TTTCTCTGATCACTCAGAGT+GGG + chr4_3:60396972-60396991 Msa0652690:intron 40.0%
TTGACTAAAAAGGTCCCGTT+TGG - chr4_3:60397527-60397546 None:intergenic 40.0%
ATGGCAAAGGATATAAGCAG+GGG + chr4_3:60397653-60397672 Msa0652690:intron 40.0%
CCAAATATGCCAGAAACAGA+AGG - chr4_3:60397816-60397835 None:intergenic 40.0%
!! CCTTCTGTTTCTGGCATATT+TGG + chr4_3:60397813-60397832 Msa0652690:intron 40.0%
!! TCTGTTTCTGGCATATTTGG+AGG + chr4_3:60397816-60397835 Msa0652690:intron 40.0%
GTAAGCACAAAAGCCAAGTT+AGG - chr4_3:60398003-60398022 None:intergenic 40.0%
CACACACCCTGATTATCATT+TGG - chr4_3:60398055-60398074 None:intergenic 40.0%
CAAAAGGAATGCATTCATGG+AGG + chr4_3:60398221-60398240 Msa0652690:CDS 40.0%
ATTCTATGGAAAAGAGGCTG+AGG + chr4_3:60398271-60398290 Msa0652690:CDS 40.0%
TTCTATGGAAAAGAGGCTGA+GGG + chr4_3:60398272-60398291 Msa0652690:CDS 40.0%
CTTGTAATGCTTCTGATGCT+AGG + chr4_3:60398298-60398317 Msa0652690:CDS 40.0%
! TCTTGTTTGAAACCCGAAAG+GGG + chr4_3:60398416-60398435 Msa0652690:intron 40.0%
!! CTTGTTTTCTTTCCCCTTTC+GGG - chr4_3:60398431-60398450 None:intergenic 40.0%
AAGGGGAAAGAAAACAAGAG+AGG + chr4_3:60398433-60398452 Msa0652690:intron 40.0%
TCTTGAAAAGGTCAAGCACA+GGG - chr4_3:60398769-60398788 None:intergenic 40.0%
!! TGTGCTTGACCTTTTCAAGA+GGG + chr4_3:60398769-60398788 Msa0652690:CDS 40.0%
TTCATTCAACCGACGTTGTA+AGG - chr4_3:60398831-60398850 None:intergenic 40.0%
CTCATATCGCTTGATGTACT+CGG - chr4_3:60398906-60398925 None:intergenic 40.0%
AACATTGGACTCTAGTAAGC+AGG + chr4_3:60399033-60399052 Msa0652690:CDS 40.0%
TTTATCAAGGCAGAAAGCTG+AGG + chr4_3:60399090-60399109 Msa0652690:CDS 40.0%
!! AGCAAAATCTGCTCTAGAGA+AGG + chr4_3:60399258-60399277 Msa0652690:CDS 40.0%
AAACAAGCAGACACAGTTGA+GGG + chr4_3:60399303-60399322 Msa0652690:CDS 40.0%
GTCTTAAGAGAAGAGTTCTC+TGG + chr4_3:60399331-60399350 Msa0652690:CDS 40.0%
!! AGAAGAGTTCTCTGGAACTT+TGG + chr4_3:60399339-60399358 Msa0652690:CDS 40.0%
AAAAGAAATGGGTGGGTATC+AGG - chr4_3:60399386-60399405 None:intergenic 40.0%
CCCATAATTCCTTGCAAACT+TGG + chr4_3:60399442-60399461 Msa0652690:intron 40.0%
CCCAAGTTTGCAAGGAATTA+TGG - chr4_3:60399446-60399465 None:intergenic 40.0%
!! GCTTCTTAGAAGTGTTGTCT+CGG + chr4_3:60399582-60399601 Msa0652690:intron 40.0%
TTGTCTCGGCACTATTATGA+AGG + chr4_3:60399596-60399615 Msa0652690:intron 40.0%
TGTCTCGGCACTATTATGAA+GGG + chr4_3:60399597-60399616 Msa0652690:intron 40.0%
GGAAGCAATAGTATATCAGC+AGG + chr4_3:60399845-60399864 Msa0652690:CDS 40.0%
ATTGGTACTTCTGCTCAAGA+TGG - chr4_3:60399878-60399897 None:intergenic 40.0%
GATTTGAGGAGGTTCAAGAA+AGG + chr4_3:60399910-60399929 Msa0652690:CDS 40.0%
TGCTGAAAAAGAAGCTGCAA+GGG + chr4_3:60399941-60399960 Msa0652690:CDS 40.0%
GAGAGGAGAATTGAAACTCT+AGG + chr4_3:60400071-60400090 Msa0652690:CDS 40.0%
! GGAGAATTGAAACTCTAGGA+AGG + chr4_3:60400075-60400094 Msa0652690:CDS 40.0%
AGGAAGGGAGAAAGATAATC+TGG + chr4_3:60400091-60400110 Msa0652690:CDS 40.0%
AGGGAGAAAGATAATCTGGA+AGG + chr4_3:60400095-60400114 Msa0652690:CDS 40.0%
!! GAAGGATTTAGAAGCACTTC+TGG + chr4_3:60400199-60400218 Msa0652690:CDS 40.0%
CACATACACAGGCAAATAAC+CGG + chr4_3:60400291-60400310 Msa0652690:CDS 40.0%
ACATACACAGGCAAATAACC+GGG + chr4_3:60400292-60400311 Msa0652690:CDS 40.0%
CTTAGTCAGCTCTTGATGTA+GGG - chr4_3:60400366-60400385 None:intergenic 40.0%
ACTTAGTCAGCTCTTGATGT+AGG - chr4_3:60400367-60400386 None:intergenic 40.0%
AGTAAGCTAAAGACAACCGA+TGG + chr4_3:60400410-60400429 Msa0652690:CDS 40.0%
!! TGCTGATTCTGTACAAGACA+TGG + chr4_3:60400463-60400482 Msa0652690:CDS 40.0%
!! GCAAGCCCTAGATTTTTAAG+GGG + chr4_3:60400488-60400507 Msa0652690:CDS 40.0%
TAGATTGAACCACCATCTTC+TGG - chr4_3:60400557-60400576 None:intergenic 40.0%
! AGATGGTGGTTCAATCTATG+AGG + chr4_3:60400559-60400578 Msa0652690:CDS 40.0%
! GATGGTGGTTCAATCTATGA+GGG + chr4_3:60400560-60400579 Msa0652690:CDS 40.0%
AGATCTTGTTGCTCTGTATG+AGG + chr4_3:60400715-60400734 Msa0652690:CDS 40.0%
GTATTCTTCAGAGGTGATGA+CGG + chr4_3:60400741-60400760 Msa0652690:exon 40.0%
TATTCTTCAGAGGTGATGAC+GGG + chr4_3:60400742-60400761 Msa0652690:exon 40.0%
!! TAGGCCATAGGAAGTTTTGA+TGG + chr4_3:60400953-60400972 Msa0652690:three_prime_UTR 40.0%
TAGACAAGGCGAATAGCTCT+CGG - chr4_3:60392077-60392096 None:intergenic 45.0%
! CCTTTTCATCGCAGTAGACA+AGG - chr4_3:60392091-60392110 None:intergenic 45.0%
CCTTGTCTACTGCGATGAAA+AGG + chr4_3:60392088-60392107 Msa0652690:CDS 45.0%
! GACGAGTTGAAGAATAGCGA+CGG - chr4_3:60392138-60392157 None:intergenic 45.0%
CGCTATTCTTCAACTCGTCA+AGG + chr4_3:60392139-60392158 Msa0652690:CDS 45.0%
CAAACAGAAACGACACCGAT+GGG - chr4_3:60392167-60392186 None:intergenic 45.0%
ACAAACAGAAACGACACCGA+TGG - chr4_3:60392168-60392187 None:intergenic 45.0%
!! ATCGGTGTCGTTTCTGTTTG+TGG + chr4_3:60392167-60392186 Msa0652690:CDS 45.0%
!!! GTGCATCGGTTTTGAAGTTC+AGG + chr4_3:60392505-60392524 Msa0652690:intron 45.0%
GTTTGACCACAACGAGTATG+TGG + chr4_3:60392801-60392820 Msa0652690:intron 45.0%
GGCTAATTTCCGGGATAAGT+TGG + chr4_3:60392910-60392929 Msa0652690:intron 45.0%
ATCCAAAGCCCTTTGGTACA+GGG - chr4_3:60393343-60393362 None:intergenic 45.0%
GAACAGCCAGTGAGAATATC+TGG - chr4_3:60393592-60393611 None:intergenic 45.0%
!! GATATTCCATGACCGGTTTG+TGG + chr4_3:60393705-60393724 Msa0652690:intron 45.0%
TCAACAACAGACCCACAAAC+CGG - chr4_3:60393720-60393739 None:intergenic 45.0%
TCAGATGGGTGGTATAGATG+AGG + chr4_3:60393819-60393838 Msa0652690:intron 45.0%
! AAGACTTCCGCGTCTGAAAT+AGG + chr4_3:60393910-60393929 Msa0652690:CDS 45.0%
!! TTTGTTTGGCTCTTACGGGT+AGG + chr4_3:60393949-60393968 Msa0652690:intron 45.0%
! TTGGTGGCAGGACTTCTATT+TGG + chr4_3:60394086-60394105 Msa0652690:intron 45.0%
!! GCAAGTTCTAGATAGTCTCG+GGG - chr4_3:60394141-60394160 None:intergenic 45.0%
TTGCTTTGCGGTCTGTTCAA+GGG + chr4_3:60394157-60394176 Msa0652690:CDS 45.0%
AGTTAGAATGGCATAGGCAC+AGG + chr4_3:60394304-60394323 Msa0652690:intron 45.0%
ACATATGTAGCAGACGACCT+AGG + chr4_3:60394330-60394349 Msa0652690:intron 45.0%
TGTGAAGCTTATTTCCCCTC+TGG + chr4_3:60394629-60394648 Msa0652690:intron 45.0%
GAAAGTTAGCAACTCCAGAG+GGG - chr4_3:60394646-60394665 None:intergenic 45.0%
CAGAAAGTTAGCAACTCCAG+AGG - chr4_3:60394648-60394667 None:intergenic 45.0%
ATCTGGGAATAGAGCACGAA+TGG - chr4_3:60394698-60394717 None:intergenic 45.0%
TTCGTGCTCTATTCCCAGAT+AGG + chr4_3:60394698-60394717 Msa0652690:CDS 45.0%
TCGTGCTCTATTCCCAGATA+GGG + chr4_3:60394699-60394718 Msa0652690:CDS 45.0%
AGAACAAGGCCAAAGCAAGT+TGG + chr4_3:60394937-60394956 Msa0652690:CDS 45.0%
GTTGGAGCAACTATGATGAC+AGG + chr4_3:60394955-60394974 Msa0652690:CDS 45.0%
GGAGGAAGAAATAGTAGGCA+CGG - chr4_3:60395034-60395053 None:intergenic 45.0%
! TGCCTACTATTTCTTCCTCC+TGG + chr4_3:60395034-60395053 Msa0652690:CDS 45.0%
TGCCAGGAGGAAGAAATAGT+AGG - chr4_3:60395039-60395058 None:intergenic 45.0%
! TACTATTTCTTCCTCCTGGC+AGG + chr4_3:60395038-60395057 Msa0652690:CDS 45.0%
CATGATCCACGATTGACAAC+TGG + chr4_3:60395443-60395462 Msa0652690:intron 45.0%
AGGAAACCAGTTGTCAATCG+TGG - chr4_3:60395452-60395471 None:intergenic 45.0%
! GACAACTGGTTTCCTTGATG+TGG + chr4_3:60395457-60395476 Msa0652690:intron 45.0%
AGATTACTCACTTCCTCAGG+TGG - chr4_3:60395844-60395863 None:intergenic 45.0%
AATGCTAGTGCTGTAGGAGT+TGG + chr4_3:60395988-60396007 Msa0652690:CDS 45.0%
TTGTTTAGACTGCAAGGGGT+TGG + chr4_3:60396195-60396214 Msa0652690:intron 45.0%
GAGAGATGGAAGTTTGACAG+GGG - chr4_3:60396527-60396546 None:intergenic 45.0%
CATGATAGATAGACGCCACT+TGG + chr4_3:60396546-60396565 Msa0652690:intron 45.0%
ATCCTTTGTGCCAATTTGGG+TGG + chr4_3:60396634-60396653 Msa0652690:intron 45.0%
TCCTTTGTGCCAATTTGGGT+GGG + chr4_3:60396635-60396654 Msa0652690:intron 45.0%
!! TTTCTGCCGCTTGTTATCAG+CGG - chr4_3:60396734-60396753 None:intergenic 45.0%
TTCTCTGATCACTCAGAGTG+GGG + chr4_3:60396973-60396992 Msa0652690:intron 45.0%
TGGCAAAGGATATAAGCAGG+GGG + chr4_3:60397654-60397673 Msa0652690:intron 45.0%
! TATAAGCAGGGGGGTTTTAC+TGG + chr4_3:60397664-60397683 Msa0652690:intron 45.0%
ACCTGGTCGTCAATTCAACA+AGG - chr4_3:60398522-60398541 None:intergenic 45.0%
TGTTGAATTGACGACCAGGT+TGG + chr4_3:60398522-60398541 Msa0652690:intron 45.0%
GAAAAGTCCATTCAAGGTCC+TGG + chr4_3:60398592-60398611 Msa0652690:CDS 45.0%
! CCATTTTCCAGGACCTTGAA+TGG - chr4_3:60398602-60398621 None:intergenic 45.0%
CCATTCAAGGTCCTGGAAAA+TGG + chr4_3:60398599-60398618 Msa0652690:CDS 45.0%
TTGCTGTCTTCTTGCAGCAA+AGG + chr4_3:60398629-60398648 Msa0652690:CDS 45.0%
CTCTTGAAAAGGTCAAGCAC+AGG - chr4_3:60398770-60398789 None:intergenic 45.0%
!! CTGTGCTTGACCTTTTCAAG+AGG + chr4_3:60398768-60398787 Msa0652690:CDS 45.0%
GTTCTCTTGCCTTACAACGT+CGG + chr4_3:60398819-60398838 Msa0652690:CDS 45.0%
AGATGACCTTACTGACCAAG+CGG + chr4_3:60398855-60398874 Msa0652690:CDS 45.0%
CGAGTACATCAAGCGATATG+AGG + chr4_3:60398904-60398923 Msa0652690:CDS 45.0%
CTCTAGTAAGCAGGAATCCA+TGG + chr4_3:60399042-60399061 Msa0652690:CDS 45.0%
GTAAGCAGGAATCCATGGAT+TGG + chr4_3:60399047-60399066 Msa0652690:CDS 45.0%
AGAGAAGGCAGCAATTGTTC+AGG + chr4_3:60399273-60399292 Msa0652690:CDS 45.0%
CAAACAAGCAGACACAGTTG+AGG + chr4_3:60399302-60399321 Msa0652690:CDS 45.0%
AGTCAGAACCCAAGTTTGCA+AGG - chr4_3:60399454-60399473 None:intergenic 45.0%
TGCTTCCCTCTCATATGACT+GGG - chr4_3:60399832-60399851 None:intergenic 45.0%
TTGCTTCCCTCTCATATGAC+TGG - chr4_3:60399833-60399852 None:intergenic 45.0%
CTGCTGAAAAAGAAGCTGCA+AGG + chr4_3:60399940-60399959 Msa0652690:CDS 45.0%
AAAGACTGGCACAGATTGAG+AGG + chr4_3:60400045-60400064 Msa0652690:CDS 45.0%
AAGACTGGCACAGATTGAGA+GGG + chr4_3:60400046-60400065 Msa0652690:CDS 45.0%
AGGTGAATTGCAGAGAGCAA+CGG + chr4_3:60400115-60400134 Msa0652690:CDS 45.0%
! GAAGGTGCAACAAAGAGAGA+AGG + chr4_3:60400181-60400200 Msa0652690:CDS 45.0%
!! ACTTTTGGAAACAGAGCGTG+AGG + chr4_3:60400268-60400287 Msa0652690:CDS 45.0%
AACCGATGGTAAGCGATTGA+GGG + chr4_3:60400424-60400443 Msa0652690:CDS 45.0%
TTGAGGGCAGAGAATGACAA+TGG + chr4_3:60400440-60400459 Msa0652690:CDS 45.0%
! TCTTCTGGCTGTGTGTACTT+AGG - chr4_3:60400542-60400561 None:intergenic 45.0%
AAGTACACACAGCCAGAAGA+TGG + chr4_3:60400542-60400561 Msa0652690:CDS 45.0%
! TTCAATCTATGAGGGTGCAG+AGG + chr4_3:60400568-60400587 Msa0652690:CDS 45.0%
TAGTCAGCAAGCCAATGAAG+AGG + chr4_3:60400598-60400617 Msa0652690:CDS 45.0%
TCAGTTCTCGCTTAAGCTTC+GGG - chr4_3:60400643-60400662 None:intergenic 45.0%
GTCAGTTCTCGCTTAAGCTT+CGG - chr4_3:60400644-60400663 None:intergenic 45.0%
! ATTCTTCAGAGGTGATGACG+GGG + chr4_3:60400743-60400762 Msa0652690:exon 45.0%
!!! TGATGACGGGGGTTTTGAAA+AGG + chr4_3:60400755-60400774 Msa0652690:exon 45.0%
CGGAGTGATAAAGAAGCAAC+AGG - chr4_3:60400791-60400810 None:intergenic 45.0%
GCTTCTTTATCACTCCGTCT+AGG + chr4_3:60400794-60400813 Msa0652690:three_prime_UTR 45.0%
GAGATCTAGACAGACCTAGA+CGG - chr4_3:60400811-60400830 None:intergenic 45.0%
TCTAGATCTCATTGATGCCG+TGG + chr4_3:60400821-60400840 Msa0652690:three_prime_UTR 45.0%
ATGCCGTGGTTACTGACATA+CGG + chr4_3:60400835-60400854 Msa0652690:three_prime_UTR 45.0%
AGTCCGTATGTCAGTAACCA+CGG - chr4_3:60400841-60400860 None:intergenic 45.0%
CGTGCCATCAAAACTTCCTA+TGG - chr4_3:60400960-60400979 None:intergenic 45.0%
!! ATAATAAATGTTAAAATATT+AGG + chr4_3:60394257-60394276 Msa0652690:intron 5.0%
TGAAGAATAGCGACGGCTTC+TGG - chr4_3:60392131-60392150 None:intergenic 50.0%
CAACTCGTCAAGGAACCCAT+CGG + chr4_3:60392149-60392168 Msa0652690:CDS 50.0%
! TAGGCCTTATCCCACTAAGC+GGG - chr4_3:60393166-60393185 None:intergenic 50.0%
! CTAGGCCTTATCCCACTAAG+CGG - chr4_3:60393167-60393186 None:intergenic 50.0%
ACACATCGACCCTGTACCAA+AGG + chr4_3:60393331-60393350 Msa0652690:CDS 50.0%
CACATCGACCCTGTACCAAA+GGG + chr4_3:60393332-60393351 Msa0652690:CDS 50.0%
CATCCAAAGCCCTTTGGTAC+AGG - chr4_3:60393344-60393363 None:intergenic 50.0%
!! GTACCAAAGGGCTTTGGATG+TGG + chr4_3:60393344-60393363 Msa0652690:CDS 50.0%
TCAAGTGCGGTCCTCTTCAA+AGG - chr4_3:60393376-60393395 None:intergenic 50.0%
TTGAAGAGGACCGCACTTGA+TGG + chr4_3:60393376-60393395 Msa0652690:CDS 50.0%
GTACTCCGTTCCATCAAGTG+CGG - chr4_3:60393389-60393408 None:intergenic 50.0%
CAGCACCCAGATATTCTCAC+TGG + chr4_3:60393583-60393602 Msa0652690:CDS 50.0%
CTTGATAGGATGTGCCAACC+TGG - chr4_3:60393640-60393659 None:intergenic 50.0%
CTTGCTTTGCGGTCTGTTCA+AGG + chr4_3:60394156-60394175 Msa0652690:CDS 50.0%
! GGGTGAAGCATTCCCTATCT+GGG - chr4_3:60394714-60394733 None:intergenic 50.0%
! AGGGTGAAGCATTCCCTATC+TGG - chr4_3:60394715-60394734 None:intergenic 50.0%
GGGAATGCTTCACCCTTGTA+CGG + chr4_3:60394719-60394738 Msa0652690:CDS 50.0%
AAATAGTAGGCACGGCACCA+TGG - chr4_3:60395026-60395045 None:intergenic 50.0%
!! TTGAAGAAGCAGAGTGCCGT+AGG + chr4_3:60395767-60395786 Msa0652690:CDS 50.0%
!! TGAAGAAGCAGAGTGCCGTA+GGG + chr4_3:60395768-60395787 Msa0652690:CDS 50.0%
GTGCCGTAGGGCTTATGATT+TGG + chr4_3:60395780-60395799 Msa0652690:CDS 50.0%
TAGATAGACGCCACTTGGCT+TGG + chr4_3:60396551-60396570 Msa0652690:intron 50.0%
TCAAACCTGAGACCTTGAGG+AGG - chr4_3:60396612-60396631 None:intergenic 50.0%
TCTCTGATCACTCAGAGTGG+GGG + chr4_3:60396974-60396993 Msa0652690:intron 50.0%
GCAATAAGCTCGTGGCTAAG+TGG + chr4_3:60397495-60397514 Msa0652690:intron 50.0%
ATAAGCTCGTGGCTAAGTGG+CGG + chr4_3:60397498-60397517 Msa0652690:intron 50.0%
GCTAAGTGGCGGTTACCAAA+CGG + chr4_3:60397509-60397528 Msa0652690:intron 50.0%
CTAAGTGGCGGTTACCAAAC+GGG + chr4_3:60397510-60397529 Msa0652690:intron 50.0%
GGCAAAGGATATAAGCAGGG+GGG + chr4_3:60397655-60397674 Msa0652690:intron 50.0%
!! TGCCACTTTCTTGGAGTGTG+AGG + chr4_3:60398145-60398164 Msa0652690:intron 50.0%
TGCCTCACACTCCAAGAAAG+TGG - chr4_3:60398150-60398169 None:intergenic 50.0%
! GCCTTGTTGAATTGACGACC+AGG + chr4_3:60398518-60398537 Msa0652690:intron 50.0%
! GTGGTTGAGAGTAGTGGAAC+CGG + chr4_3:60398688-60398707 Msa0652690:intron 50.0%
! CTCGGACTTTTCACCTTCAC+TGG - chr4_3:60398888-60398907 None:intergenic 50.0%
TCAAGGCAGAAAGCTGAGGA+AGG + chr4_3:60399094-60399113 Msa0652690:CDS 50.0%
TGCACTACTGCGGGATTTGA+GGG - chr4_3:60399143-60399162 None:intergenic 50.0%
ACAAGCTCAGTCTGCTCAAG+AGG + chr4_3:60399192-60399211 Msa0652690:CDS 50.0%
AGGAGGCTGATGAGTGGAAA+CGG + chr4_3:60399212-60399231 Msa0652690:CDS 50.0%
AGAAATGGGTGGGTATCAGG+AGG - chr4_3:60399383-60399402 None:intergenic 50.0%
AGGCTGCTGAGTCCAAGATA+AGG + chr4_3:60399727-60399746 Msa0652690:intron 50.0%
CAAGGCCCAGTCATATGAGA+GGG + chr4_3:60399824-60399843 Msa0652690:CDS 50.0%
CTGAAGTGGCTGATAGAGCA+CGG + chr4_3:60399967-60399986 Msa0652690:CDS 50.0%
TGAAGTGGCTGATAGAGCAC+GGG + chr4_3:60399968-60399987 Msa0652690:CDS 50.0%
GAAGAGTGAGATGCAGAGAC+TGG + chr4_3:60400016-60400035 Msa0652690:CDS 50.0%
TGAGATGCAGAGACTGGCAA+TGG + chr4_3:60400022-60400041 Msa0652690:CDS 50.0%
GAGACTGGCAATGGAAAGAC+TGG + chr4_3:60400031-60400050 Msa0652690:CDS 50.0%
! GAGAGCAACGGATTCAGAGA+AGG + chr4_3:60400127-60400146 Msa0652690:CDS 50.0%
AGTTGCGAAGCTCGAAGAGA+AGG + chr4_3:60400163-60400182 Msa0652690:CDS 50.0%
CAACCGATGGTAAGCGATTG+AGG + chr4_3:60400423-60400442 Msa0652690:CDS 50.0%
TGCCCTCAATCGCTTACCAT+CGG - chr4_3:60400429-60400448 None:intergenic 50.0%
TAAGGGGAGCTAAAAGAGCC+AGG + chr4_3:60400504-60400523 Msa0652690:CDS 50.0%
!! CTTAGGACTGGTTGTACTCC+TGG - chr4_3:60400525-60400544 None:intergenic 50.0%
TGGCTGTGTGTACTTAGGAC+TGG - chr4_3:60400537-60400556 None:intergenic 50.0%
TACACACAGCCAGAAGATGG+TGG + chr4_3:60400545-60400564 Msa0652690:CDS 50.0%
TTCTCGCTTAAGCTTCGGGA+TGG - chr4_3:60400639-60400658 None:intergenic 50.0%
!! TTCTTCAGAGGTGATGACGG+GGG + chr4_3:60400744-60400763 Msa0652690:exon 50.0%
!! CGGCGGGGTTTTCCTTGTTT+CGG - chr4_3:60391989-60392008 None:intergenic 55.0%
GATGAAGAAGATGGCCTCGC+CGG - chr4_3:60392035-60392054 None:intergenic 55.0%
ACAAGGCGAATAGCTCTCGG+TGG - chr4_3:60392074-60392093 None:intergenic 55.0%
CGACGGCTTCTGGATCCATA+CGG - chr4_3:60392121-60392140 None:intergenic 55.0%
CTTATCCCACTAAGCGGGGT+CGG - chr4_3:60393161-60393180 None:intergenic 55.0%
! AGGCCTTATCCCACTAAGCG+GGG - chr4_3:60393165-60393184 None:intergenic 55.0%
CTGCAGCTCTTAGGAAGCAG+TGG + chr4_3:60393289-60393308 Msa0652690:intron 55.0%
CAGCTCTTAGGAAGCAGTGG+TGG + chr4_3:60393292-60393311 Msa0652690:intron 55.0%
GACCCTGTACCAAAGGGCTT+TGG + chr4_3:60393338-60393357 Msa0652690:CDS 55.0%
GCTCCACATCCAAAGCCCTT+TGG - chr4_3:60393350-60393369 None:intergenic 55.0%
! TGTGGAGCGCACCTTTGAAG+AGG + chr4_3:60393362-60393381 Msa0652690:CDS 55.0%
GAGGACCGCACTTGATGGAA+CGG + chr4_3:60393381-60393400 Msa0652690:CDS 55.0%
ACAGACCCACAAACCGGTCA+TGG - chr4_3:60393714-60393733 None:intergenic 55.0%
! CTTCCTCAGGTGGCTTGGAA+CGG - chr4_3:60395834-60395853 None:intergenic 55.0%
ACTCACTTCCTCAGGTGGCT+TGG - chr4_3:60395839-60395858 None:intergenic 55.0%
!! CTGTAGGAGTTGGTGCAGCT+AGG + chr4_3:60395998-60396017 Msa0652690:CDS 55.0%
!! GACTGCAAGGGGTTGGTTTG+TGG + chr4_3:60396202-60396221 Msa0652690:intron 55.0%
!! TTGGCTTGGCTTGGTGGTGT+TGG + chr4_3:60396565-60396584 Msa0652690:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr4_3:60396598-60396617 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr4_3:60396597-60396616 Msa0652690:intron 55.0%
GCCCACCCAAATTGGCACAA+AGG - chr4_3:60396639-60396658 None:intergenic 55.0%
CTCTGATCACTCAGAGTGGG+GGG + chr4_3:60396975-60396994 Msa0652690:intron 55.0%
TTCCAGCCGCTTGGTCAGTA+AGG - chr4_3:60398864-60398883 None:intergenic 55.0%
GCAAGCTAATCGTCGCTCAC+TGG + chr4_3:60398985-60399004 Msa0652690:CDS 55.0%
CTGCACTACTGCGGGATTTG+AGG - chr4_3:60399144-60399163 None:intergenic 55.0%
TTGCTTCGGCTGCACTACTG+CGG - chr4_3:60399153-60399172 None:intergenic 55.0%
TAGTGCAGCCGAAGCAAGGT+TGG + chr4_3:60399156-60399175 Msa0652690:CDS 55.0%
TGCTGCTGCCAACCTTGCTT+CGG - chr4_3:60399167-60399186 None:intergenic 55.0%
AAGCAAGGTTGGCAGCAGCA+AGG + chr4_3:60399167-60399186 Msa0652690:CDS 55.0%
AGCAAGGTTGGCAGCAGCAA+GGG + chr4_3:60399168-60399187 Msa0652690:CDS 55.0%
AGCTCAGTCTGCTCAAGAGG+AGG + chr4_3:60399195-60399214 Msa0652690:CDS 55.0%
CTCAAGAGGAGGCTGATGAG+TGG + chr4_3:60399206-60399225 Msa0652690:CDS 55.0%
CCTCTCATATGACTGGGCCT+TGG - chr4_3:60399826-60399845 None:intergenic 55.0%
CCAAGGCCCAGTCATATGAG+AGG + chr4_3:60399823-60399842 Msa0652690:CDS 55.0%
AGCTGCAAGGGCTACTGAAG+TGG + chr4_3:60399953-60399972 Msa0652690:CDS 55.0%
TGAAGCAGGCATGGCTCAGA+AGG + chr4_3:60399992-60400011 Msa0652690:CDS 55.0%
CACAGATTGAGAGGGCTGAG+AGG + chr4_3:60400054-60400073 Msa0652690:CDS 55.0%
AGAGCGTGAGGCACATACAC+AGG + chr4_3:60400280-60400299 Msa0652690:CDS 55.0%
TCTGCAGCTACAGTCTGCAC+AGG + chr4_3:60400328-60400347 Msa0652690:CDS 55.0%
AGATTGCGGTGACGCATCGG+CGG - chr4_3:60392006-60392025 None:intergenic 60.0%
CGGAGATTGCGGTGACGCAT+CGG - chr4_3:60392009-60392028 None:intergenic 60.0%
CGATGCGTCACCGCAATCTC+CGG + chr4_3:60392007-60392026 Msa0652690:CDS 60.0%
GCGAATAGCTCTCGGTGGTC+CGG - chr4_3:60392069-60392088 None:intergenic 60.0%
TGTTTGTGGTCGTGCTCGCC+AGG + chr4_3:60392181-60392200 Msa0652690:CDS 60.0%
GTTTGTGGTCGTGCTCGCCA+GGG + chr4_3:60392182-60392201 Msa0652690:CDS 60.0%
ACTAAGCGGGGTCGGCTACA+TGG - chr4_3:60393153-60393172 None:intergenic 60.0%
ATGTAGCCGACCCCGCTTAG+TGG + chr4_3:60393152-60393171 Msa0652690:intron 60.0%
TGTAGCCGACCCCGCTTAGT+GGG + chr4_3:60393153-60393172 Msa0652690:intron 60.0%
CGACCCCGCTTAGTGGGATA+AGG + chr4_3:60393159-60393178 Msa0652690:intron 60.0%
TGACCGTTCCAAGCCACCTG+AGG + chr4_3:60395828-60395847 Msa0652690:CDS 60.0%
!! AGACGCCACTTGGCTTGGCT+TGG + chr4_3:60396556-60396575 Msa0652690:intron 60.0%
CACCACCAAGCCAAGCCAAG+TGG - chr4_3:60396564-60396583 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr4_3:60396604-60396623 Msa0652690:intron 60.0%
! CTTGTTATCAGCGGCGGTGG+TGG - chr4_3:60396725-60396744 None:intergenic 60.0%
CCACCGCCGCTGATAACAAG+CGG + chr4_3:60396725-60396744 Msa0652690:intron 60.0%
!! CTGCCGCTTGTTATCAGCGG+CGG - chr4_3:60396731-60396750 None:intergenic 60.0%
! TGCCCTGCCAGCAGTTTTGC+TGG + chr4_3:60396757-60396776 Msa0652690:intron 60.0%
! GCCCTGCCAGCAGTTTTGCT+GGG + chr4_3:60396758-60396777 Msa0652690:intron 60.0%
GCCCAGCAAAACTGCTGGCA+GGG - chr4_3:60396762-60396781 None:intergenic 60.0%
CTCTCGCCCAGCAAAACTGC+TGG - chr4_3:60396767-60396786 None:intergenic 60.0%
! CAGCAGTTTTGCTGGGCGAG+AGG + chr4_3:60396765-60396784 Msa0652690:intron 60.0%
GACCTTACTGACCAAGCGGC+TGG + chr4_3:60398859-60398878 Msa0652690:CDS 60.0%
!! TTCACTGGCTTCCAGCCGCT+TGG - chr4_3:60398873-60398892 None:intergenic 60.0%
AAGCGGCTGGAAGCCAGTGA+AGG + chr4_3:60398872-60398891 Msa0652690:CDS 60.0%
TGCTTCGGCTGCACTACTGC+GGG - chr4_3:60399152-60399171 None:intergenic 60.0%
GCAGTAGTGCAGCCGAAGCA+AGG + chr4_3:60399152-60399171 Msa0652690:CDS 60.0%
! GATAGAGCACGGGCTGAAGC+AGG + chr4_3:60399978-60399997 Msa0652690:CDS 60.0%
GCAGAGAGAGACTCTCAGCC+CGG - chr4_3:60400313-60400332 None:intergenic 60.0%
! ATTGCGGTGACGCATCGGCG+GGG - chr4_3:60392004-60392023 None:intergenic 65.0%
! GATTGCGGTGACGCATCGGC+GGG - chr4_3:60392005-60392024 None:intergenic 65.0%
!! CGCCACTTGGCTTGGCTTGG+TGG + chr4_3:60396559-60396578 Msa0652690:intron 65.0%
! GTTATCAGCGGCGGTGGTGG+TGG - chr4_3:60396722-60396741 None:intergenic 65.0%
!! CCGCTTGTTATCAGCGGCGG+TGG - chr4_3:60396728-60396747 None:intergenic 65.0%
CGCCCAGCAAAACTGCTGGC+AGG - chr4_3:60396763-60396782 None:intergenic 65.0%
! AGCACGGGCTGAAGCAGGCA+TGG + chr4_3:60399983-60400002 Msa0652690:CDS 65.0%
GTCACCGCAATCTCCGGCGC+CGG + chr4_3:60392013-60392032 Msa0652690:CDS 70.0%
! CTCGCCGGCGCCGGAGATTG+CGG - chr4_3:60392020-60392039 None:intergenic 75.0%
GAAGATGGCCTCGCCGGCGC+CGG - chr4_3:60392029-60392048 None:intergenic 75.0%
!!! CGCAATCTCCGGCGCCGGCG+AGG + chr4_3:60392018-60392037 Msa0652690:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60391890 60401137 60391890 ID=Msa0652690;Name=Msa0652690
chr4_3 mRNA 60391890 60401137 60391890 ID=Msa0652690-mRNA-1;Parent=Msa0652690;Name=Msa0652690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=79|1|1|1|1|1|14|380|1061
chr4_3 exon 60391890 60392226 60391890 ID=Msa0652690-mRNA-1:exon:16423;Parent=Msa0652690-mRNA-1
chr4_3 exon 60393295 60393456 60393295 ID=Msa0652690-mRNA-1:exon:16424;Parent=Msa0652690-mRNA-1
chr4_3 exon 60393575 60393640 60393575 ID=Msa0652690-mRNA-1:exon:16425;Parent=Msa0652690-mRNA-1
chr4_3 exon 60393823 60393966 60393823 ID=Msa0652690-mRNA-1:exon:16426;Parent=Msa0652690-mRNA-1
chr4_3 exon 60394096 60394209 60394096 ID=Msa0652690-mRNA-1:exon:16427;Parent=Msa0652690-mRNA-1
chr4_3 exon 60394685 60394786 60394685 ID=Msa0652690-mRNA-1:exon:16428;Parent=Msa0652690-mRNA-1
chr4_3 exon 60394874 60395059 60394874 ID=Msa0652690-mRNA-1:exon:16429;Parent=Msa0652690-mRNA-1
chr4_3 exon 60395763 60395852 60395763 ID=Msa0652690-mRNA-1:exon:16430;Parent=Msa0652690-mRNA-1
chr4_3 exon 60395934 60396068 60395934 ID=Msa0652690-mRNA-1:exon:16431;Parent=Msa0652690-mRNA-1
chr4_3 exon 60398216 60398338 60398216 ID=Msa0652690-mRNA-1:exon:16432;Parent=Msa0652690-mRNA-1
chr4_3 exon 60398565 60398650 60398565 ID=Msa0652690-mRNA-1:exon:16433;Parent=Msa0652690-mRNA-1
chr4_3 exon 60398757 60399369 60398757 ID=Msa0652690-mRNA-1:exon:16434;Parent=Msa0652690-mRNA-1
chr4_3 exon 60399492 60399569 60399492 ID=Msa0652690-mRNA-1:exon:16435;Parent=Msa0652690-mRNA-1
chr4_3 exon 60399729 60401137 60399729 ID=Msa0652690-mRNA-1:exon:16436;Parent=Msa0652690-mRNA-1
chr4_3 five_prime_UTR 60391890 60391968 60391890 ID=Msa0652690-mRNA-1:five_prime_utr;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60391969 60392226 60391969 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60393295 60393456 60393295 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60393575 60393640 60393575 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60393823 60393966 60393823 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60394096 60394209 60394096 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60394685 60394786 60394685 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60394874 60395059 60394874 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60395763 60395852 60395763 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60395934 60396068 60395934 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60398216 60398338 60398216 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60398565 60398650 60398565 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60398757 60399369 60398757 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60399492 60399569 60399492 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 CDS 60399729 60400757 60399729 ID=Msa0652690-mRNA-1:cds;Parent=Msa0652690-mRNA-1
chr4_3 three_prime_UTR 60400758 60401137 60400758 ID=Msa0652690-mRNA-1:three_prime_utr;Parent=Msa0652690-mRNA-1
Gene Sequence

>Msa0652690

ATGTTCAATTTGTTTAACCGAAACAAGGAAAACCCCGCCGATGCGTCACCGCAATCTCCGGCGCCGGCGAGGCCATCTTCTTCATCTTCTCAGTTCACCGGACCACCGAGAGCTATTCGCCTTGTCTACTGCGATGAAAAGGGAAAGTTCCGTATGGATCCAGAAGCCGTCGCTATTCTTCAACTCGTCAAGGAACCCATCGGTGTCGTTTCTGTTTGTGGTCGTGCTCGCCAGGGAAAAAGCTATATCTTGAACCAGCTCTTAGGAAGCAGTGGTGGATTTAAAGTAGCATCTACACATCGACCCTGTACCAAAGGGCTTTGGATGTGGAGCGCACCTTTGAAGAGGACCGCACTTGATGGAACGGAGTACAATCTTCTACTATTAGACAGTGAAGGAATAGATGCTTATGATCAAACGGGAACATACAGCACCCAGATATTCTCACTGGCTGTTCTTTTATCTAGCATGTTCATTTACAACCAGATGGGTGGTATAGATGAGGCTGCTCTTGACCGTCTTTCTCTAGTCACTCAAATGACAAAGCATATTCGTGTTAGAGCTTCTGGAGAAAAGACTTCCGCGTCTGAAATAGGACAGTTTTCCCCAATTTTTGTTTGGCTCTTACGGGACTTCTATTTGGACTTGAGTGAAGATAACAGAAAAATAACACCCCGAGACTATCTAGAACTTGCTTTGCGGTCTGTTCAAGGGAACAGAAACGATGTAGCTGCTAAAAATGAGATTCGAGAATCCATTCGTGCTCTATTCCCAGATAGGGAATGCTTCACCCTTGTACGGCCTTTAAACAATGAAAATGATCTACAGCGACTGGACCAGATATCATCGGACAAACTAAGACCTGAATTTCGAAGAGATATTCAAGCTTTGATAAAGTTTGTTTTTGAAAGAACAAGGCCAAAGCAAGTTGGAGCAACTATGATGACAGGTCCTGTATTGATTGGTATCACCGAATCTTATCTTGATGCACTCAACCATGGTGCCGTGCCTACTATTTCTTCCTCCTGGCAGAGTGTTGAAGAAGCAGAGTGCCGTAGGGCTTATGATTTGGCTTCTGAAGTTTATATGGCTTCTTTTGACCGTTCCAAGCCACCTGAGGAAGTCGCTTTGATGGAAGCTCACGAACAAGCAGTTCATAAGTCAATGGCTGCTTTTAATGCTAGTGCTGTAGGAGTTGGTGCAGCTAGGAAGAAATATGAAGGTCAGCTTCAGAAATTCATCAAAAAGGCTTTCGAGGATTACAAAAGGAATGCATTCATGGAGGCAGATATACAATGTTCAAATGCCATACATTCTATGGAAAAGAGGCTGAGGGCAGCTTGTAATGCTTCTGATGCTAGGGTTGATAATGTTGCAAAGGTTCTAGATGCTCTTTTAACTGAATATGAAAAGTCCATTCAAGGTCCTGGAAAATGGAAAAAACTTGCTGTCTTCTTGCAGCAAAGTTTTGAAGGCCCTGTGCTTGACCTTTTCAAGAGGGTAATAGATAAAGTTGAATCAGAAAAAAGTTCTCTTGCCTTACAACGTCGGTTGAATGAAGATAAGATGACCTTACTGACCAAGCGGCTGGAAGCCAGTGAAGGTGAAAAGTCCGAGTACATCAAGCGATATGAGGATGCCATCAACGATAAGAAGAAATTAACTGATGAATACATGAACCGCATTACTGAATTGCAAGCTAATCGTCGCTCACTGGACGAGAGATATTCTAGCTTATTGAAAACATTGGACTCTAGTAAGCAGGAATCCATGGATTGGAAAAGAAAATATGAACAGGTTTTATCAAGGCAGAAAGCTGAGGAAGGTCAAACTAGTTCTGAAATAGCAGCCCTCAAATCCCGCAGTAGTGCAGCCGAAGCAAGGTTGGCAGCAGCAAGGGAACAAGCTCAGTCTGCTCAAGAGGAGGCTGATGAGTGGAAACGGAAGTATGATGTTGCTGTCAGAGAAGCAAAATCTGCTCTAGAGAAGGCAGCAATTGTTCAGGAGCGCACAAACAAGCAGACACAGTTGAGGGAAGATGTCTTAAGAGAAGAGTTCTCTGGAACTTTGGCTGAAAAAGATGAAGAAATAAAAGAAAAAACTGCGAAAATTGAGCATGCTGAGATGTGTTTAGCAACTCTGAAATTAGAGTTGAAGGCTGCTGAGTCCAAGATAAGGAGTTATGATACAGAAATATCGTCACTGAGGAATGAAATTAAAGATTTGACTGACAAAATGAAATCTGAAAATGCCAAGGCCCAGTCATATGAGAGGGAAGCAATAGTATATCAGCAGGAAAAGAACCATCTTGAGCAGAAGTACCAATCTGAGTTCAAAAGATTTGAGGAGGTTCAAGAAAGGTGTAAAACTGCTGAAAAAGAAGCTGCAAGGGCTACTGAAGTGGCTGATAGAGCACGGGCTGAAGCAGGCATGGCTCAGAAGGAGAAGAGTGAGATGCAGAGACTGGCAATGGAAAGACTGGCACAGATTGAGAGGGCTGAGAGGAGAATTGAAACTCTAGGAAGGGAGAAAGATAATCTGGAAGGTGAATTGCAGAGAGCAACGGATTCAGAGAAGGATGCACGTTTGACAGTTGCGAAGCTCGAAGAGAAGGTGCAACAAAGAGAGAAGGATTTAGAAGCACTTCTGGATAAAGATAAAACACACAGGAGAAATAATGCTCAGATTCTTGAACAACTTTTGGAAACAGAGCGTGAGGCACATACACAGGCAAATAACCGGGCTGAGAGTCTCTCTCTGCAGCTACAGTCTGCACAGGCCAAAATTGACTCCCTACATCAAGAGCTGACTAAGTTTCGAATGAATGAAACATTGGACAGTAAGCTAAAGACAACCGATGGTAAGCGATTGAGGGCAGAGAATGACAATGGTGCTGATTCTGTACAAGACATGGATGCAAGCCCTAGATTTTTAAGGGGAGCTAAAAGAGCCAGGAGTACAACCAGTCCTAAGTACACACAGCCAGAAGATGGTGGTTCAATCTATGAGGGTGCAGAGGACAATCTTAGTCAGCAAGCCAATGAAGAGGATCATACAAAGTTCACCATCCCGAAGCTTAAGCGAGAACTGACAAAACATAACTTTGGTGATCGGTTGCTTCAGTTGAAGAATCCCATGAAGAAAGATCTTGTTGCTCTGTATGAGGAATGTATTCTTCAGAGGTGA
Protein sequence

>Msa0652690

MFNLFNRNKENPADASPQSPAPARPSSSSSQFTGPPRAIRLVYCDEKGKFRMDPEAVAILQLVKEPIGVVSVCGRARQGKSYILNQLLGSSGGFKVASTHRPCTKGLWMWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGEKTSASEIGQFSPIFVWLLRDFYLDLSEDNRKITPRDYLELALRSVQGNRNDVAAKNEIRESIRALFPDRECFTLVRPLNNENDLQRLDQISSDKLRPEFRRDIQALIKFVFERTRPKQVGATMMTGPVLIGITESYLDALNHGAVPTISSSWQSVEEAECRRAYDLASEVYMASFDRSKPPEEVALMEAHEQAVHKSMAAFNASAVGVGAARKKYEGQLQKFIKKAFEDYKRNAFMEADIQCSNAIHSMEKRLRAACNASDARVDNVAKVLDALLTEYEKSIQGPGKWKKLAVFLQQSFEGPVLDLFKRVIDKVESEKSSLALQRRLNEDKMTLLTKRLEASEGEKSEYIKRYEDAINDKKKLTDEYMNRITELQANRRSLDERYSSLLKTLDSSKQESMDWKRKYEQVLSRQKAEEGQTSSEIAALKSRSSAAEARLAAAREQAQSAQEEADEWKRKYDVAVREAKSALEKAAIVQERTNKQTQLREDVLREEFSGTLAEKDEEIKEKTAKIEHAEMCLATLKLELKAAESKIRSYDTEISSLRNEIKDLTDKMKSENAKAQSYEREAIVYQQEKNHLEQKYQSEFKRFEEVQERCKTAEKEAARATEVADRARAEAGMAQKEKSEMQRLAMERLAQIERAERRIETLGREKDNLEGELQRATDSEKDARLTVAKLEEKVQQREKDLEALLDKDKTHRRNNAQILEQLLETEREAHTQANNRAESLSLQLQSAQAKIDSLHQELTKFRMNETLDSKLKTTDGKRLRAENDNGADSVQDMDASPRFLRGAKRARSTTSPKYTQPEDGGSIYEGAEDNLSQQANEEDHTKFTIPKLKRELTKHNFGDRLLQLKNPMKKDLVALYEECILQR*