AlfalfaGEDB | Msa0945240

M. sativa cultivar zhongmu-4 / Msa0945240

KEGG: K20899
GO: GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0012505 GO:0015629 GO:0017076 GO:0019001 GO:0019221 GO:0023052 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034097 GO:0034340 GO:0034341 GO:0034504 GO:0034612 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0060333 GO:0060337 GO:0065007 GO:0070013 GO:0070555 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071347 GO:0071356 GO:0071357 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF02263.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945240	XP_013456936.2	98.211	1062	16	2	1	1061	1	1060	0.0	2137

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945240	sp\|A0A0G2JDV3\|GBP6_MOUSE	34.673	398	233	9	33	419	2	383	4.95e-62	226

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0945240	0.831326	1.778378e-55	-8.615850e-47
Msa0000910	Msa0945240	0.827536	1.482094e-54	-8.615850e-47
Msa0002560	Msa0945240	0.893796	4.501533e-75	-8.615850e-47
Msa0002680	Msa0945240	0.847520	1.098142e-59	-8.615850e-47
Msa0002710	Msa0945240	0.826802	2.221590e-54	-8.615850e-47
Msa0003220	Msa0945240	0.884159	2.432318e-71	-8.615850e-47
Msa0003270	Msa0945240	0.860129	2.560604e-63	-8.615850e-47
Msa0003400	Msa0945240	0.822317	2.526685e-53	-8.615850e-47
Msa0003630	Msa0945240	0.818098	2.340277e-52	-8.615850e-47
Msa0003700	Msa0945240	0.811071	8.409582e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945240	MtrunA17_Chr4g0046381	98.211	1062	16	2	1	1061	1	1060	0.0	2137
Msa0945240	MtrunA17_Chr8g0367751	98.701	154	2	0	427	580	1	154	7.21e-100	311
Msa0945240	MtrunA17_Chr7g0260571	28.861	395	244	13	49	429	41	412	2.66e-31	130
Msa0945240	MtrunA17_Chr1g0184871	34.752	141	89	2	49	187	37	176	5.74e-22	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0945240	AT5G46070.1	63.501	1074	365	8	1	1059	1	1062	0.0	1320
Msa0945240	AT1G03830.2	33.487	1084	582	18	37	1061	10	1013	7.09e-160	499
Msa0945240	AT1G03830.1	32.380	1084	572	20	37	1061	10	991	3.62e-144	457
Msa0945240	AT2G38840.1	30.446	381	234	13	49	421	42	399	7.24e-33	136

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Find 247 sgRNAs with CRISPR-Local

Find 633 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTACTCACTGATATC+TGG	0.406828	6_3:+23971462	None:intergenic
AAACAAGCAGACACAGTTGA+GGG	0.594533	6_3:-23966936	Msa0945240:CDS
AAACTGTCCTATTTCAGACG+CGG	0.731251	6_3:+23972322	None:intergenic
AAAGACTGGCACAGATTGAG+AGG	0.589219	6_3:-23966194	Msa0945240:CDS
AAATAGTAGGCACGGCACCA+TGG	0.605148	6_3:+23971216	None:intergenic
AACAGATCAAATAGATAGAT+AGG	0.458492	6_3:+23965125	None:intergenic
AACAGCCAGTGAGAATATCT+GGG	0.596996	6_3:+23972651	None:intergenic
AACATTGGACTCTAGTAAGC+AGG	0.500408	6_3:-23967206	Msa0945240:CDS
AACCGATGGTAAGCGATTGA+GGG	0.553509	6_3:-23965815	Msa0945240:CDS
AACTCTGAAATTAGAGTTGA+AGG	0.370925	6_3:-23966691	Msa0945240:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCTATATCTTGAACC+AGG	-	chr6_3:23965439-23965458	Msa0945240:three_prime_UTR	30.0%
TATACAATTCCAACTTATCC+CGG	+	chr6_3:23966156-23966175	None:intergenic	30.0%
TGCTACAGTAATTATACAAG+CGG	+	chr6_3:23966246-23966265	None:intergenic	30.0%
AGGAAAATATAGGTCTTGAT+AGG	+	chr6_3:23966888-23966907	None:intergenic	30.0%
TGATGTTTCATTTACTCAGA+TGG	-	chr6_3:23967038-23967057	Msa0945240:CDS	30.0%
GATGTTTCATTTACTCAGAT+GGG	-	chr6_3:23967039-23967058	Msa0945240:CDS	30.0%
TAAGAGCCAAACAAAAATTG+GGG	+	chr6_3:23967178-23967197	None:intergenic	30.0%
GTAAGAGCCAAACAAAAATT+GGG	+	chr6_3:23967179-23967198	None:intergenic	30.0%
TTACGAACCATTGCAAATAT+TGG	-	chr6_3:23967206-23967225	Msa0945240:CDS	30.0%
GCACTATTTGTGAATAATCT+TGG	-	chr6_3:23967301-23967320	Msa0945240:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	23965124	23974371	23965124	ID=Msa0945240;Name=Msa0945240
chr6_3	mRNA	23965124	23974371	23965124	ID=Msa0945240-mRNA-1;Parent=Msa0945240;Name=Msa0945240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=79\|1\|1\|1\|1\|1\|14\|380\|1061
chr6_3	exon	23965124	23966532	23965124	ID=Msa0945240-mRNA-1:exon:6751;Parent=Msa0945240-mRNA-1
chr6_3	exon	23966692	23966769	23966692	ID=Msa0945240-mRNA-1:exon:6750;Parent=Msa0945240-mRNA-1
chr6_3	exon	23966892	23967504	23966892	ID=Msa0945240-mRNA-1:exon:6749;Parent=Msa0945240-mRNA-1
chr6_3	exon	23967611	23967696	23967611	ID=Msa0945240-mRNA-1:exon:6748;Parent=Msa0945240-mRNA-1
chr6_3	exon	23967924	23968046	23967924	ID=Msa0945240-mRNA-1:exon:6747;Parent=Msa0945240-mRNA-1
chr6_3	exon	23970193	23970327	23970193	ID=Msa0945240-mRNA-1:exon:6746;Parent=Msa0945240-mRNA-1
chr6_3	exon	23970409	23970498	23970409	ID=Msa0945240-mRNA-1:exon:6745;Parent=Msa0945240-mRNA-1
chr6_3	exon	23971202	23971387	23971202	ID=Msa0945240-mRNA-1:exon:6744;Parent=Msa0945240-mRNA-1
chr6_3	exon	23971475	23971576	23971475	ID=Msa0945240-mRNA-1:exon:6743;Parent=Msa0945240-mRNA-1
chr6_3	exon	23972052	23972165	23972052	ID=Msa0945240-mRNA-1:exon:6742;Parent=Msa0945240-mRNA-1
chr6_3	exon	23972295	23972438	23972295	ID=Msa0945240-mRNA-1:exon:6741;Parent=Msa0945240-mRNA-1
chr6_3	exon	23972621	23972686	23972621	ID=Msa0945240-mRNA-1:exon:6740;Parent=Msa0945240-mRNA-1
chr6_3	exon	23972805	23972966	23972805	ID=Msa0945240-mRNA-1:exon:6739;Parent=Msa0945240-mRNA-1
chr6_3	exon	23974035	23974371	23974035	ID=Msa0945240-mRNA-1:exon:6738;Parent=Msa0945240-mRNA-1
chr6_3	five_prime_UTR	23974293	23974371	23974293	ID=Msa0945240-mRNA-1:five_prime_utr;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23974035	23974292	23974035	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23972805	23972966	23972805	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23972621	23972686	23972621	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23972295	23972438	23972295	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23972052	23972165	23972052	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23971475	23971576	23971475	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23971202	23971387	23971202	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23970409	23970498	23970409	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23970193	23970327	23970193	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23967924	23968046	23967924	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23967611	23967696	23967611	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23966892	23967504	23966892	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23966692	23966769	23966692	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	CDS	23965504	23966532	23965504	ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3	three_prime_UTR	23965124	23965503	23965124	ID=Msa0945240-mRNA-1:three_prime_utr;Parent=Msa0945240-mRNA-1

Gene Sequence

>Msa0945240

ATGTTCAATTTGTTTAACCGAAACAAGGAAAACCCCGCCGATGCGTCACCGCAATCTCCGGCGCCGGCGAGGCCATCTTCTTCATCTTCTCAGTTCACCGGACCACCGAGAGCTATTCGCCTTGTCTACTGCGATGAAAAGGGAAAGTTCCGTATGGATCCAGAAGCCGTCGCTATTCTTCAACTCGTCAAGGAACCCATCGGTGTCGTTTCTGTTTGTGGTCGTGCTCGCCAGGGAAAAAGCTATATCTTGAACCAGCTCTTAGGAAGCAGTGGTGGATTTAAAGTAGCATCTACACATCGACCCTGTACCAAAGGGCTTTGGATGTGGAGCGCACCTTTGAAGAGGACCGCACTTGATGGAACGGAGTACAATCTTCTACTATTAGACAGTGAAGGAATAGATGCTTATGATCAAACGGGAACATACAGCACCCAGATATTCTCACTGGCTGTTCTTTTATCTAGCATGTTCATTTACAACCAGATGGGTGGTATAGATGAGGCTGCTCTTGACCGTCTTTCTCTAGTCACTCAAATGACAAAGCATATTCGTGTTAGAGCTTCTGGAGAAAAGACTTCCGCGTCTGAAATAGGACAGTTTTCCCCAATTTTTGTTTGGCTCTTACGGGACTTCTATTTGGACTTGAGTGAAGATAACAGAAAAATAACACCCCGAGACTATCTAGAACTTGCTTTGCGGTCTGTTCAAGGGAACAGAAACGATGTAGCTGCTAAAAATGAGATTCGAGAATCCATTCGTGCTCTATTCCCAGATAGGGAATGCTTCACCCTTGTACGGCCTTTAAACAATGAAAATGATCTACAGCGACTGGACCAGATATCATCGGACAAACTAAGACCTGAATTTCGAAGAGATATTCAAGCTTTGATAAAGTTTGTTTTTGAAAGAACAAGGCCAAAGCAAGTTGGAGCAACTATGATGACAGGTCCTGTATTGATTGGTATCACCGAATCTTATCTTGATGCACTCAACCATGGTGCCGTGCCTACTATTTCTTCCTCCTGGCAGAGTGTTGAAGAAGCAGAGTGCCGTAGGGCTTATGATTTGGCTTCTGAAGTTTATATGGCTTCTTTTGACCGTTCCAAGCCACCTGAGGAAGTCGCTTTGATGGAAGCTCACGAACAAGCAGTTCATAAGTCAATGGCTGCTTTTAATGCTAGTGCTGTAGGAGTTGGTGCAGCTAGGAAGAAATATGAAGGTCAGCTTCAGAAATTCATCAAAAAGGCTTTCGAGGATTACAAAAGGAATGCATTCATGGAGGCAGATATACAATGTTCAAATGCCATACATTCTATGGAAAAGAGGCTGAGGGCAGCTTGTAATGCTTCTGATGCTAGGGTTGATAATGTTGCAAAGGTTCTAGATGCTCTTTTAACTGAATATGAAAAGTCCATTCAAGGTCCTGGAAAATGGAAAAAACTTGCTGTCTTCTTGCAGCAAAGTTTTGAAGGCCCTGTGCTTGACCTTTTCAAGAGGGTAATAGATAAAGTTGAATCAGAAAAAAGTTCTCTTGCCTTACAACGTCGGTTGAATGAAGATAAGATGACCTTACTGACCAAGCGGCTGGAAGCCAGTGAAGGTGAAAAGTCCGAGTACATCAAGCGATATGAGGATGCCATCAACGATAAGAAGAAATTAACTGATGAATACATGAACCGCATTACTGAATTGCAAGCTAATCGTCGCTCACTGGACGAGAGATATTCTAGCTTATTGAAAACATTGGACTCTAGTAAGCAGGAATCCATGGATTGGAAAAGAAAATATGAACAGGTTTTATCAAGGCAGAAAGCTGAGGAAGGTCAAACTAGTTCTGAAATAGCAGCCCTCAAATCCCGCAGTAGTGCAGCCGAAGCAAGGTTGGCAGCAGCAAGGGAACAAGCTCAGTCTGCTCAAGAGGAGGCTGATGAGTGGAAACGGAAGTATGATGTTGCTGTCAGAGAAGCAAAATCTGCTCTAGAGAAGGCAGCAATTGTTCAGGAGCGCACAAACAAGCAGACACAGTTGAGGGAAGATGTCTTAAGAGAAGAGTTCTCTGGAACTTTGGCTGAAAAAGATGAAGAAATAAAAGAAAAAACTGCGAAAATTGAGCATGCTGAGATGTGTTTAGCAACTCTGAAATTAGAGTTGAAGGCTGCTGAGTCCAAGATAAGGAGTTATGATACAGAAATATCGTCACTGAGGAATGAAATTAAAGATTTGACTGACAAAATGAAATCTGAAAATGCCAAGGCCCAGTCATATGAGAGGGAAGCAATAGTATATCAGCAGGAAAAGAACCATCTTGAGCAGAAGTACCAATCTGAGTTCAAAAGATTTGAGGAGGTTCAAGAAAGGTGTAAAACTGCTGAAAAAGAAGCTGCAAGGGCTACTGAAGTGGCTGATAGAGCACGGGCTGAAGCAGGCATGGCTCAGAAGGAGAAGAGTGAGATGCAGAGACTGGCAATGGAAAGACTGGCACAGATTGAGAGGGCTGAGAGGAGAATTGAAACTCTAGGAAGGGAGAAAGATAATCTGGAAGGTGAATTGCAGAGAGCAACGGATTCAGAGAAGGATGCACGTTTGACAGTTGCGAAGCTCGAAGAGAAGGTGCAACAAAGAGAGAAGGATTTAGAAGCACTTCTGGATAAAGATAAAACACACAGGAGAAATAATGCTCAGATTCTTGAACAACTTTTGGAAACAGAGCGTGAGGCACATACACAGGCAAATAACCGGGCTGAGAGTCTCTCTCTGCAGCTACAGTCTGCACAGGCCAAAATTGACTCCCTACATCAAGAGCTGACTAAGTTTCGAATGAATGAAACATTGGACAGTAAGCTAAAGACAACCGATGGTAAGCGATTGAGGGCAGAGAATGACAATGGTGCTGATTCTGTACAAGACATGGATGCAAGCCCTAGATTTTTAAGGGGAGCTAAAAGAGCCAGGAGTACAACCAGTCCTAAGTACACACAGCCAGAAGATGGTGGTTCAATCTATGAGGGTGCAGAGGACAATCTTAGTCAGCAAGCCAATGAAGAGGATCATACAAAGTTCACCATCCCGAAGCTTAAGCGAGAACTGACAAAACATAACTTTGGTGATCGGTTGCTTCAGTTGAAGAATCCCATGAAGAAAGATCTTGTTGCTCTGTATGAGGAATGTATTCTTCAGAGGTGA

Protein sequence

>Msa0945240

MFNLFNRNKENPADASPQSPAPARPSSSSSQFTGPPRAIRLVYCDEKGKFRMDPEAVAILQLVKEPIGVVSVCGRARQGKSYILNQLLGSSGGFKVASTHRPCTKGLWMWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGEKTSASEIGQFSPIFVWLLRDFYLDLSEDNRKITPRDYLELALRSVQGNRNDVAAKNEIRESIRALFPDRECFTLVRPLNNENDLQRLDQISSDKLRPEFRRDIQALIKFVFERTRPKQVGATMMTGPVLIGITESYLDALNHGAVPTISSSWQSVEEAECRRAYDLASEVYMASFDRSKPPEEVALMEAHEQAVHKSMAAFNASAVGVGAARKKYEGQLQKFIKKAFEDYKRNAFMEADIQCSNAIHSMEKRLRAACNASDARVDNVAKVLDALLTEYEKSIQGPGKWKKLAVFLQQSFEGPVLDLFKRVIDKVESEKSSLALQRRLNEDKMTLLTKRLEASEGEKSEYIKRYEDAINDKKKLTDEYMNRITELQANRRSLDERYSSLLKTLDSSKQESMDWKRKYEQVLSRQKAEEGQTSSEIAALKSRSSAAEARLAAAREQAQSAQEEADEWKRKYDVAVREAKSALEKAAIVQERTNKQTQLREDVLREEFSGTLAEKDEEIKEKTAKIEHAEMCLATLKLELKAAESKIRSYDTEISSLRNEIKDLTDKMKSENAKAQSYEREAIVYQQEKNHLEQKYQSEFKRFEEVQERCKTAEKEAARATEVADRARAEAGMAQKEKSEMQRLAMERLAQIERAERRIETLGREKDNLEGELQRATDSEKDARLTVAKLEEKVQQREKDLEALLDKDKTHRRNNAQILEQLLETEREAHTQANNRAESLSLQLQSAQAKIDSLHQELTKFRMNETLDSKLKTTDGKRLRAENDNGADSVQDMDASPRFLRGAKRARSTTSPKYTQPEDGGSIYEGAEDNLSQQANEEDHTKFTIPKLKRELTKHNFGDRLLQLKNPMKKDLVALYEECILQR*