AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945240 MtrunA17_Chr4g0046381 98.211 1062 16 2 1 1061 1 1060 0.0 2137
Msa0945240 MtrunA17_Chr8g0367751 98.701 154 2 0 427 580 1 154 7.21e-100 311
Msa0945240 MtrunA17_Chr7g0260571 28.861 395 244 13 49 429 41 412 2.66e-31 130
Msa0945240 MtrunA17_Chr1g0184871 34.752 141 89 2 49 187 37 176 5.74e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945240 AT5G46070.1 63.501 1074 365 8 1 1059 1 1062 0.0 1320
Msa0945240 AT1G03830.2 33.487 1084 582 18 37 1061 10 1013 7.09e-160 499
Msa0945240 AT1G03830.1 32.380 1084 572 20 37 1061 10 991 3.62e-144 457
Msa0945240 AT2G38840.1 30.446 381 234 13 49 421 42 399 7.24e-33 136

Find 247 sgRNAs with CRISPR-Local

Find 633 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTCGTGTTAGAGCTTC+TGG 0.217599 6_3:-23972356 Msa0945240:CDS
TTGATGTAGGGAGTCAATTT+TGG 0.236521 6_3:+23965888 None:intergenic
GAACAGCCAGTGAGAATATC+TGG 0.241610 6_3:+23972650 None:intergenic
TCAGATTCTTGAACAACTTT+TGG 0.243272 6_3:-23965986 Msa0945240:CDS
TGAAGAATAGCGACGGCTTC+TGG 0.244650 6_3:+23974111 None:intergenic
TTTGGCTTCTGAAGTTTATA+TGG 0.244661 6_3:-23970441 Msa0945240:CDS
TTCAAATGCCATACATTCTA+TGG 0.256941 6_3:-23967983 Msa0945240:CDS
ATAATGTAGCTCGTCTAATA+TGG 0.265458 6_3:+23965179 None:intergenic
TGAATATCTCTTCGAAATTC+AGG 0.265912 6_3:+23971350 None:intergenic
CCATTCAAGGTCCTGGAAAA+TGG 0.269211 6_3:-23967640 Msa0945240:CDS
TAATTTCTTCTTATCGTTGA+TGG 0.287384 6_3:+23967309 None:intergenic
GAAGGATTTAGAAGCACTTC+TGG 0.288775 6_3:-23966040 Msa0945240:CDS
TTGGTGGCAGGACTTCTATT+TGG 0.301399 6_3:-23972153 Msa0945240:intron
AAGACTTCCGCGTCTGAAAT+AGG 0.302341 6_3:-23972329 Msa0945240:CDS
GTCAGTTCTCGCTTAAGCTT+CGG 0.302731 6_3:+23965598 None:intergenic
TCAGTTCTCGCTTAAGCTTC+GGG 0.316124 6_3:+23965599 None:intergenic
GCTTCAGAAATTCATCAAAA+AGG 0.324812 6_3:-23970201 Msa0945240:CDS
CTGCACTACTGCGGGATTTG+AGG 0.333363 6_3:+23967098 None:intergenic
AGAAGAGTTCTCTGGAACTT+TGG 0.337253 6_3:-23966900 Msa0945240:CDS
GTGCCGTAGGGCTTATGATT+TGG 0.341173 6_3:-23970459 Msa0945240:CDS
ATAGTTGCTCCAACTTGCTT+TGG 0.353087 6_3:+23971293 None:intergenic
TGTATCATAACTCCTTATCT+TGG 0.353386 6_3:+23966500 None:intergenic
TAGATTGAACCACCATCTTC+TGG 0.355525 6_3:+23965685 None:intergenic
TGTTTGTGGTCGTGCTCGCC+AGG 0.358739 6_3:-23974058 Msa0945240:CDS
ATCGGTGTCGTTTCTGTTTG+TGG 0.362431 6_3:-23974072 Msa0945240:CDS
AGGGTGAAGCATTCCCTATC+TGG 0.363281 6_3:+23971527 None:intergenic
CACATACACAGGCAAATAAC+CGG 0.367024 6_3:-23965948 Msa0945240:CDS
AACTCTGAAATTAGAGTTGA+AGG 0.370925 6_3:-23966691 Msa0945240:intron
TACTATTTCTTCCTCCTGGC+AGG 0.371704 6_3:-23971201 Msa0945240:intron
CTTGCTTTGCGGTCTGTTCA+AGG 0.378443 6_3:-23972083 Msa0945240:CDS
TTCATTCAACCGACGTTGTA+AGG 0.380049 6_3:+23967411 None:intergenic
AGGAAGGGAGAAAGATAATC+TGG 0.381254 6_3:-23966148 Msa0945240:CDS
CTTTGTATGATCCTCTTCAT+TGG 0.383035 6_3:+23965630 None:intergenic
TGCACTACTGCGGGATTTGA+GGG 0.400154 6_3:+23967099 None:intergenic
TTGCTTCCCTCTCATATGAC+TGG 0.404679 6_3:+23966409 None:intergenic
AAAAGTTACTCACTGATATC+TGG 0.406828 6_3:+23971462 None:intergenic
GACCCTGTACCAAAGGGCTT+TGG 0.408344 6_3:-23972901 Msa0945240:CDS
AGAGAAGGCAGCAATTGTTC+AGG 0.413046 6_3:-23966966 Msa0945240:CDS
CCTTGTCTACTGCGATGAAA+AGG 0.414963 6_3:-23974151 Msa0945240:CDS
TTGAAGAGGACCGCACTTGA+TGG 0.416779 6_3:-23972863 Msa0945240:CDS
AGCAATGATTATCATATTGT+AGG 0.417295 6_3:-23965305 Msa0945240:three_prime_UTR
TGCCTACTATTTCTTCCTCC+TGG 0.418883 6_3:-23971205 Msa0945240:CDS
CTTGTAATGCTTCTGATGCT+AGG 0.420952 6_3:-23967942 Msa0945240:CDS
TTCACTGGCTTCCAGCCGCT+TGG 0.422240 6_3:+23967369 None:intergenic
CATCCAAAGCCCTTTGGTAC+AGG 0.424224 6_3:+23972898 None:intergenic
TGCTGCTGCCAACCTTGCTT+CGG 0.431643 6_3:+23967075 None:intergenic
TTACAAAAGGAATGCATTCA+TGG 0.431741 6_3:-23968022 Msa0945240:CDS
CAACCGATGGTAAGCGATTG+AGG 0.435894 6_3:-23965816 Msa0945240:CDS
AGCAACAAGATCTTTCTTCA+TGG 0.439505 6_3:+23965534 None:intergenic
CTTAGGACTGGTTGTACTCC+TGG 0.439972 6_3:+23965717 None:intergenic
GATAGAGCACGGGCTGAAGC+AGG 0.446378 6_3:-23966261 Msa0945240:CDS
CTCTAGTAAGCAGGAATCCA+TGG 0.447658 6_3:-23967197 Msa0945240:CDS
TTGGAAAAGAAAATATGAAC+AGG 0.447825 6_3:-23967173 Msa0945240:CDS
CATTGTTTAAAGGCCGTACA+AGG 0.448349 6_3:+23971507 None:intergenic
CGATGCGTCACCGCAATCTC+CGG 0.449488 6_3:-23974232 Msa0945240:CDS
TGCTTCGGCTGCACTACTGC+GGG 0.453229 6_3:+23967090 None:intergenic
CGCAATCTCCGGCGCCGGCG+AGG 0.456199 6_3:-23974221 Msa0945240:CDS
TTCTAGCTTATTGAAAACAT+TGG 0.457291 6_3:-23967221 Msa0945240:CDS
CCTCTCATATGACTGGGCCT+TGG 0.458441 6_3:+23966416 None:intergenic
AACAGATCAAATAGATAGAT+AGG 0.458492 6_3:+23965125 None:intergenic
TATCTATTACCCTCTTGAAA+AGG 0.460525 6_3:+23967461 None:intergenic
GTACCAAAGGGCTTTGGATG+TGG 0.460841 6_3:-23972895 Msa0945240:CDS
ACTCACTTCCTCAGGTGGCT+TGG 0.464273 6_3:+23970403 None:intergenic
GCAAGCTAATCGTCGCTCAC+TGG 0.465514 6_3:-23967254 Msa0945240:CDS
TTGCTGTCTTCTTGCAGCAA+AGG 0.466814 6_3:-23967610 Msa0945240:intron
GCAACAAGATCTTTCTTCAT+GGG 0.467500 6_3:+23965535 None:intergenic
TGGCTGTGTGTACTTAGGAC+TGG 0.467783 6_3:+23965705 None:intergenic
AGCAAGTTCTAGATAGTCTC+GGG 0.469812 6_3:+23972100 None:intergenic
TGAAGCAGGCATGGCTCAGA+AGG 0.471929 6_3:-23966247 Msa0945240:CDS
TAAGGGGAGCTAAAAGAGCC+AGG 0.473037 6_3:-23965735 Msa0945240:CDS
ACTATCTAGAACTTGCTTTG+CGG 0.474260 6_3:-23972094 Msa0945240:CDS
GCGAATAGCTCTCGGTGGTC+CGG 0.477132 6_3:+23974173 None:intergenic
CGGAGTGATAAAGAAGCAAC+AGG 0.477719 6_3:+23965451 None:intergenic
GAATATGAAAAGTCCATTCA+AGG 0.479415 6_3:-23967653 Msa0945240:CDS
CGTGCCATCAAAACTTCCTA+TGG 0.479937 6_3:+23965282 None:intergenic
ATCTGAGTTCAAAAGATTTG+AGG 0.483402 6_3:-23966343 Msa0945240:CDS
GATTGCGGTGACGCATCGGC+GGG 0.485484 6_3:+23974237 None:intergenic
CTCATATCGCTTGATGTACT+CGG 0.485796 6_3:+23967336 None:intergenic
GCTTCTTTATCACTCCGTCT+AGG 0.486784 6_3:-23965445 Msa0945240:three_prime_UTR
GTCTTAAGAGAAGAGTTCTC+TGG 0.488034 6_3:-23966908 Msa0945240:CDS
GAAGATGGCCTCGCCGGCGC+CGG 0.491115 6_3:+23974213 None:intergenic
GAAAAGTCCATTCAAGGTCC+TGG 0.494569 6_3:-23967647 Msa0945240:CDS
GACCTTACTGACCAAGCGGC+TGG 0.494825 6_3:-23967380 Msa0945240:CDS
AGATGGTGGTTCAATCTATG+AGG 0.494878 6_3:-23965680 Msa0945240:CDS
ACTTAGTCAGCTCTTGATGT+AGG 0.496077 6_3:+23965875 None:intergenic
AGCAAGGTTGGCAGCAGCAA+GGG 0.496730 6_3:-23967071 Msa0945240:CDS
CTTGTCTACTGCGATGAAAA+GGG 0.497647 6_3:-23974150 Msa0945240:CDS
GGAAGCAATAGTATATCAGC+AGG 0.497850 6_3:-23966394 Msa0945240:CDS
AATAGATGCTTATGATCAAA+CGG 0.498795 6_3:-23972804 Msa0945240:intron
CTCGCCGGCGCCGGAGATTG+CGG 0.498820 6_3:+23974222 None:intergenic
AACATTGGACTCTAGTAAGC+AGG 0.500408 6_3:-23967206 Msa0945240:CDS
ACATTATTATTAATTAAGAC+TGG 0.500975 6_3:-23965163 Msa0945240:three_prime_UTR
TTGAAGAAGCAGAGTGCCGT+AGG 0.503816 6_3:-23970472 Msa0945240:CDS
TCTTCTGGCTGTGTGTACTT+AGG 0.505864 6_3:+23965700 None:intergenic
GAAGAGTGAGATGCAGAGAC+TGG 0.507152 6_3:-23966223 Msa0945240:CDS
TTGAACAACAGGATTACAAA+AGG 0.507556 6_3:-23968035 Msa0945240:intron
GAGTGCATCAAGATAAGATT+CGG 0.507604 6_3:+23971241 None:intergenic
GAACTGACAAAACATAACTT+TGG 0.508057 6_3:-23965583 Msa0945240:CDS
TTGTAATGCTTCTGATGCTA+GGG 0.508274 6_3:-23967941 Msa0945240:CDS
TGCTTCCCTCTCATATGACT+GGG 0.509387 6_3:+23966410 None:intergenic
GCTCCACATCCAAAGCCCTT+TGG 0.509572 6_3:+23972892 None:intergenic
TTCCAGCCGCTTGGTCAGTA+AGG 0.510381 6_3:+23967378 None:intergenic
ATTGGTACTTCTGCTCAAGA+TGG 0.512425 6_3:+23966364 None:intergenic
AGCACGGGCTGAAGCAGGCA+TGG 0.516913 6_3:-23966256 Msa0945240:CDS
TCTTCATCTTCTCAGTTCAC+CGG 0.517270 6_3:-23974192 Msa0945240:CDS
TAGTGCAGCCGAAGCAAGGT+TGG 0.519438 6_3:-23967083 Msa0945240:CDS
GATGAAGAAGATGGCCTCGC+CGG 0.522103 6_3:+23974207 None:intergenic
AGATCTTGTTGCTCTGTATG+AGG 0.522535 6_3:-23965524 Msa0945240:CDS
CCATACATTCTATGGAAAAG+AGG 0.523129 6_3:-23967975 Msa0945240:CDS
AGGAGGCTGATGAGTGGAAA+CGG 0.523697 6_3:-23967027 Msa0945240:CDS
GTAAGCAGGAATCCATGGAT+TGG 0.527042 6_3:-23967192 Msa0945240:CDS
CAAAACATAACTTTGGTGAT+CGG 0.527476 6_3:-23965576 Msa0945240:CDS
CGAGTACATCAAGCGATATG+AGG 0.528266 6_3:-23967335 Msa0945240:CDS
TGAAAATGATCTACAGCGAC+TGG 0.528388 6_3:-23971486 Msa0945240:CDS
CAATTTGTTTAACCGAAACA+AGG 0.530008 6_3:-23974265 Msa0945240:CDS
GTTTCGAATGAATGAAACAT+TGG 0.533871 6_3:-23965854 Msa0945240:CDS
TATTCTTCAGAGGTGATGAC+GGG 0.534020 6_3:-23965497 Msa0945240:exon
TTCGTGCTCTATTCCCAGAT+AGG 0.534115 6_3:-23971541 Msa0945240:CDS
CGGAGATTGCGGTGACGCAT+CGG 0.534432 6_3:+23974233 None:intergenic
CTTAGTCAGCTCTTGATGTA+GGG 0.535301 6_3:+23965876 None:intergenic
TTGCTTCGGCTGCACTACTG+CGG 0.535804 6_3:+23967089 None:intergenic
GGGAATGCTTCACCCTTGTA+CGG 0.536278 6_3:-23971520 Msa0945240:CDS
ATCTGGGAATAGAGCACGAA+TGG 0.537348 6_3:+23971544 None:intergenic
GAGACTGGCAATGGAAAGAC+TGG 0.537477 6_3:-23966208 Msa0945240:CDS
AATGCTAGTGCTGTAGGAGT+TGG 0.539159 6_3:-23970251 Msa0945240:CDS
ACAAGCTCAGTCTGCTCAAG+AGG 0.539174 6_3:-23967047 Msa0945240:CDS
CGCTATTCTTCAACTCGTCA+AGG 0.540905 6_3:-23974100 Msa0945240:CDS
CTCTTGAAAAGGTCAAGCAC+AGG 0.541952 6_3:+23967472 None:intergenic
GATAGATTACTCACTTCCTC+AGG 0.542341 6_3:+23970395 None:intergenic
GTCACCGCAATCTCCGGCGC+CGG 0.543657 6_3:-23974226 Msa0945240:CDS
TTGCTTTGCGGTCTGTTCAA+GGG 0.544567 6_3:-23972082 Msa0945240:CDS
GATTTGAGGAGGTTCAAGAA+AGG 0.544667 6_3:-23966329 Msa0945240:CDS
GCAGAGAGAGACTCTCAGCC+CGG 0.547945 6_3:+23965929 None:intergenic
CTTCCTCAGGTGGCTTGGAA+CGG 0.548072 6_3:+23970408 None:intergenic
TCGTGCTCTATTCCCAGATA+GGG 0.548667 6_3:-23971540 Msa0945240:CDS
CACATCGACCCTGTACCAAA+GGG 0.549082 6_3:-23972907 Msa0945240:CDS
AAGCAAGTTCTAGATAGTCT+CGG 0.551084 6_3:+23972099 None:intergenic
TCAAGTGCGGTCCTCTTCAA+AGG 0.551883 6_3:+23972866 None:intergenic
TGCCCTCAATCGCTTACCAT+CGG 0.552858 6_3:+23965813 None:intergenic
AACCGATGGTAAGCGATTGA+GGG 0.553509 6_3:-23965815 Msa0945240:CDS
GAGAGGAGAATTGAAACTCT+AGG 0.553809 6_3:-23966168 Msa0945240:CDS
GGGTGAAGCATTCCCTATCT+GGG 0.554975 6_3:+23971528 None:intergenic
CTGTAGGAGTTGGTGCAGCT+AGG 0.560333 6_3:-23970241 Msa0945240:CDS
GGAGAATTGAAACTCTAGGA+AGG 0.560800 6_3:-23966164 Msa0945240:CDS
ACAAGCAGTTCATAAGTCAA+TGG 0.561022 6_3:-23970282 Msa0945240:CDS
AGCAAAATCTGCTCTAGAGA+AGG 0.562179 6_3:-23966981 Msa0945240:CDS
TCGGTGATACCAATCAATAC+AGG 0.562467 6_3:+23971260 None:intergenic
AAGCAAGGTTGGCAGCAGCA+AGG 0.563979 6_3:-23967072 Msa0945240:CDS
GAAGGTGCAACAAAGAGAGA+AGG 0.564197 6_3:-23966058 Msa0945240:CDS
GTATTCTTCAGAGGTGATGA+CGG 0.567793 6_3:-23965498 Msa0945240:exon
ATCCAAAGCCCTTTGGTACA+GGG 0.569599 6_3:+23972899 None:intergenic
GTTTGTGGTCGTGCTCGCCA+GGG 0.569612 6_3:-23974057 Msa0945240:CDS
AGATTGCGGTGACGCATCGG+CGG 0.570325 6_3:+23974236 None:intergenic
AGAACAAGGCCAAAGCAAGT+TGG 0.571365 6_3:-23971302 Msa0945240:CDS
ATTCTATGGAAAAGAGGCTG+AGG 0.571876 6_3:-23967969 Msa0945240:CDS
ATGCCGTGGTTACTGACATA+CGG 0.572365 6_3:-23965404 Msa0945240:three_prime_UTR
GAGAGCAACGGATTCAGAGA+AGG 0.573561 6_3:-23966112 Msa0945240:CDS
ACACATCGACCCTGTACCAA+AGG 0.575105 6_3:-23972908 Msa0945240:CDS
AGTTGCGAAGCTCGAAGAGA+AGG 0.575118 6_3:-23966076 Msa0945240:CDS
GTTGGAGCAACTATGATGAC+AGG 0.575865 6_3:-23971284 Msa0945240:CDS
CTGCAGCTCTTAGGAAGCAG+TGG 0.576573 6_3:-23972950 Msa0945240:intron
AACTGAGAAGATGAAGAAGA+TGG 0.577774 6_3:+23974198 None:intergenic
AAGTACACACAGCCAGAAGA+TGG 0.578688 6_3:-23965697 Msa0945240:CDS
AGCTCAGTCTGCTCAAGAGG+AGG 0.581087 6_3:-23967044 Msa0945240:CDS
CACAGATTGAGAGGGCTGAG+AGG 0.582400 6_3:-23966185 Msa0945240:CDS
GCAGTAGTGCAGCCGAAGCA+AGG 0.584397 6_3:-23967087 Msa0945240:CDS
AGCTGCAAGGGCTACTGAAG+TGG 0.586115 6_3:-23966286 Msa0945240:CDS
TGAGTTCAAAAGATTTGAGG+AGG 0.586772 6_3:-23966340 Msa0945240:CDS
TGCCAGGAGGAAGAAATAGT+AGG 0.587287 6_3:+23971203 None:intergenic
ACAAACAGAAACGACACCGA+TGG 0.587350 6_3:+23974074 None:intergenic
ATGACAGGTCCTGTATTGAT+TGG 0.589135 6_3:-23971269 Msa0945240:CDS
AAAGACTGGCACAGATTGAG+AGG 0.589219 6_3:-23966194 Msa0945240:CDS
CTGAAGTGGCTGATAGAGCA+CGG 0.590845 6_3:-23966272 Msa0945240:CDS
GAGGACCGCACTTGATGGAA+CGG 0.593749 6_3:-23972858 Msa0945240:CDS
AAACAAGCAGACACAGTTGA+GGG 0.594533 6_3:-23966936 Msa0945240:CDS
GTTTCATTTACTCAGATGGG+TGG 0.594616 6_3:-23972431 Msa0945240:intron
TAGCATGTTCATTTACAACC+AGG 0.595059 6_3:-23972620 Msa0945240:intron
TTTATCAAGGCAGAAAGCTG+AGG 0.595083 6_3:-23967149 Msa0945240:CDS
GAGAATTGAAACTCTAGGAA+GGG 0.595834 6_3:-23966163 Msa0945240:CDS
TTCTCGCTTAAGCTTCGGGA+TGG 0.596156 6_3:+23965603 None:intergenic
TGAAGTGGCTGATAGAGCAC+GGG 0.596582 6_3:-23966271 Msa0945240:CDS
AACAGCCAGTGAGAATATCT+GGG 0.596996 6_3:+23972651 None:intergenic
TCTAGATCTCATTGATGCCG+TGG 0.597767 6_3:-23965418 Msa0945240:three_prime_UTR
AGGGAGAAAGATAATCTGGA+AGG 0.598572 6_3:-23966144 Msa0945240:CDS
TGAGATGCAGAGACTGGCAA+TGG 0.599747 6_3:-23966217 Msa0945240:CDS
CAAACAGAAACGACACCGAT+GGG 0.600094 6_3:+23974075 None:intergenic
TAGACAAGGCGAATAGCTCT+CGG 0.601053 6_3:+23974165 None:intergenic
CAGCTCTTAGGAAGCAGTGG+TGG 0.601493 6_3:-23972947 Msa0945240:CDS
AAGCGGCTGGAAGCCAGTGA+AGG 0.601767 6_3:-23967367 Msa0945240:CDS
CTCAAGAGGAGGCTGATGAG+TGG 0.603803 6_3:-23967033 Msa0945240:CDS
AGATTACTCACTTCCTCAGG+TGG 0.604534 6_3:+23970398 None:intergenic
AAATAGTAGGCACGGCACCA+TGG 0.605148 6_3:+23971216 None:intergenic
TTCTATGGAAAAGAGGCTGA+GGG 0.608007 6_3:-23967968 Msa0945240:CDS
TAGGGTTGATAATGTTGCAA+AGG 0.610623 6_3:-23967923 Msa0945240:intron
TGAAAAGGGAAAGTTCCGTA+TGG 0.611276 6_3:-23974136 Msa0945240:CDS
GCAGCTAGGAAGAAATATGA+AGG 0.611898 6_3:-23970227 Msa0945240:CDS
CTTCTACTATTAGACAGTGA+AGG 0.613868 6_3:-23972827 Msa0945240:CDS
ATTATCATATTGTAGGCCAT+AGG 0.614814 6_3:-23965298 Msa0945240:three_prime_UTR
GGAGGAAGAAATAGTAGGCA+CGG 0.614963 6_3:+23971208 None:intergenic
TGTGGAGCGCACCTTTGAAG+AGG 0.615203 6_3:-23972877 Msa0945240:CDS
TCTGCAGCTACAGTCTGCAC+AGG 0.615853 6_3:-23965911 Msa0945240:CDS
AGGTGAATTGCAGAGAGCAA+CGG 0.618861 6_3:-23966124 Msa0945240:CDS
CAGCACCCAGATATTCTCAC+TGG 0.619533 6_3:-23972656 Msa0945240:CDS
AATGAAATCTGAAAATGCCA+AGG 0.620388 6_3:-23966433 Msa0945240:CDS
TAGCTTGCAATTCAGTAATG+CGG 0.623157 6_3:+23967269 None:intergenic
ATGAGGAATGTATTCTTCAG+AGG 0.626001 6_3:-23965507 Msa0945240:CDS
AGAGCGTGAGGCACATACAC+AGG 0.626998 6_3:-23965959 Msa0945240:CDS
TATCTTGATGCACTCAACCA+TGG 0.627907 6_3:-23971233 Msa0945240:CDS
TAGTCAGCAAGCCAATGAAG+AGG 0.628518 6_3:-23965641 Msa0945240:CDS
TCAAGGCAGAAAGCTGAGGA+AGG 0.628836 6_3:-23967145 Msa0945240:CDS
CGACGGCTTCTGGATCCATA+CGG 0.629966 6_3:+23974121 None:intergenic
AGGCTGCTGAGTCCAAGATA+AGG 0.630324 6_3:-23966512 Msa0945240:CDS
ACATACACAGGCAAATAACC+GGG 0.631070 6_3:-23965947 Msa0945240:CDS
CAAACAAGCAGACACAGTTG+AGG 0.634550 6_3:-23966937 Msa0945240:CDS
CAAGGCCCAGTCATATGAGA+GGG 0.637107 6_3:-23966415 Msa0945240:CDS
GACGAGTTGAAGAATAGCGA+CGG 0.639893 6_3:+23974104 None:intergenic
TCTTGAAAAGGTCAAGCACA+GGG 0.640354 6_3:+23967473 None:intergenic
CCAAGGCCCAGTCATATGAG+AGG 0.640589 6_3:-23966416 Msa0945240:CDS
GATGGTGGTTCAATCTATGA+GGG 0.640909 6_3:-23965679 Msa0945240:CDS
CAACTCGTCAAGGAACCCAT+CGG 0.642449 6_3:-23974090 Msa0945240:CDS
AAGCCAAATCATAAGCCCTA+CGG 0.644770 6_3:+23970456 None:intergenic
GTTCTCTTGCCTTACAACGT+CGG 0.646107 6_3:-23967420 Msa0945240:CDS
TGCTGATTCTGTACAAGACA+TGG 0.648072 6_3:-23965776 Msa0945240:CDS
TTCAATCTATGAGGGTGCAG+AGG 0.648196 6_3:-23965671 Msa0945240:CDS
TCAGATGGGTGGTATAGATG+AGG 0.652331 6_3:-23972420 Msa0945240:intron
TGACCGTTCCAAGCCACCTG+AGG 0.652751 6_3:-23970411 Msa0945240:CDS
AGTCCGTATGTCAGTAACCA+CGG 0.654364 6_3:+23965401 None:intergenic
GAGATCTAGACAGACCTAGA+CGG 0.655685 6_3:+23965431 None:intergenic
ATTGTTTAAAGGCCGTACAA+GGG 0.658022 6_3:+23971508 None:intergenic
AGTAAGCTAAAGACAACCGA+TGG 0.658276 6_3:-23965829 Msa0945240:CDS
AGATGACCTTACTGACCAAG+CGG 0.663172 6_3:-23967384 Msa0945240:CDS
TGAAGAAGCAGAGTGCCGTA+GGG 0.666325 6_3:-23970471 Msa0945240:CDS
AAGACTGGCACAGATTGAGA+GGG 0.666890 6_3:-23966193 Msa0945240:CDS
ATTGCGGTGACGCATCGGCG+GGG 0.667360 6_3:+23974238 None:intergenic
TTGAGGGCAGAGAATGACAA+TGG 0.670638 6_3:-23965799 Msa0945240:CDS
TTTGAGTGACTAGAGAAAGA+CGG 0.676465 6_3:+23972387 None:intergenic
ATTCTTCAGAGGTGATGACG+GGG 0.682906 6_3:-23965496 Msa0945240:exon
TTCTTCAGAGGTGATGACGG+GGG 0.683154 6_3:-23965495 Msa0945240:exon
GTACTCCGTTCCATCAAGTG+CGG 0.691482 6_3:+23972853 None:intergenic
TGGATAAAGATAAAACACAC+AGG 0.695749 6_3:-23966020 Msa0945240:CDS
CAAAAGGAATGCATTCATGG+AGG 0.709466 6_3:-23968019 Msa0945240:CDS
TACACACAGCCAGAAGATGG+TGG 0.710446 6_3:-23965694 Msa0945240:CDS
TTTAAAACTAACCTGCCAGG+AGG 0.711712 6_3:+23971190 None:intergenic
GCAAGTTCTAGATAGTCTCG+GGG 0.731190 6_3:+23972101 None:intergenic
AAACTGTCCTATTTCAGACG+CGG 0.731251 6_3:+23972322 None:intergenic
ACAAGGCGAATAGCTCTCGG+TGG 0.744749 6_3:+23974168 None:intergenic
ATACAGAAATATCGTCACTG+AGG 0.776970 6_3:-23966482 Msa0945240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTTTTCAATCA+AGG - chr6_3:23970618-23970637 Msa0945240:intron 10.0%
!! CAGAATTAATAATAAAAAAA+AGG + chr6_3:23971149-23971168 None:intergenic 10.0%
!!! CTTTTTTTTATTATTAATTC+TGG - chr6_3:23971147-23971166 Msa0945240:intron 10.0%
!! TTTGCAAAAAAAAAAAAAAA+AGG - chr6_3:23971726-23971745 Msa0945240:intron 10.0%
!!! TATTTGTTGATGATTTTTTT+TGG - chr6_3:23965885-23965904 Msa0945240:CDS 15.0%
!!! ATTTGTTGATGATTTTTTTT+GGG - chr6_3:23965886-23965905 Msa0945240:CDS 15.0%
!!! AATTTTAAAAAAGGTTCATA+AGG + chr6_3:23966107-23966126 None:intergenic 15.0%
!!! ATAGGTTTTTATTCATAATT+GGG - chr6_3:23967623-23967642 Msa0945240:CDS 15.0%
!! TAAAAGTTATAAGCATATTA+GGG - chr6_3:23969353-23969372 Msa0945240:intron 15.0%
!!! ACTATTATTTTATCTGTATT+CGG - chr6_3:23969491-23969510 Msa0945240:intron 15.0%
!!! AAACTAATTATTTTGCATAA+GGG + chr6_3:23970844-23970863 None:intergenic 15.0%
!!! TCAAGTCTTTATTTTTAATA+TGG - chr6_3:23971343-23971362 Msa0945240:CDS 15.0%
!! AATAATTAATATTGAACAAC+AGG - chr6_3:23971427-23971446 Msa0945240:intron 15.0%
!! CAAAAAAAAAAAAAAAAGGA+TGG - chr6_3:23971730-23971749 Msa0945240:intron 15.0%
!!! ATATTTTTTTAGGAAAAAGA+TGG + chr6_3:23971957-23971976 None:intergenic 15.0%
!! ACATTATTATTAATTAAGAC+TGG - chr6_3:23974310-23974329 Msa0945240:five_prime_UTR 15.0%
!!! GAATTCTAGTAGATTTTTAT+CGG - chr6_3:23965471-23965490 Msa0945240:three_prime_UTR 20.0%
!!! TTTTATCGGTTTTGAAATTT+AGG - chr6_3:23965485-23965504 Msa0945240:exon 20.0%
!!! TTTATCGGTTTTGAAATTTA+GGG - chr6_3:23965486-23965505 Msa0945240:exon 20.0%
!!! TCGCAGTTAAATTTTAAAAA+AGG + chr6_3:23966116-23966135 None:intergenic 20.0%
!! GATATATATGTAGAACATTA+TGG - chr6_3:23966353-23966372 Msa0945240:CDS 20.0%
!!! TTGTTGTTATTATAGATTTG+TGG - chr6_3:23966485-23966504 Msa0945240:CDS 20.0%
!!! TACATTTATTTTTACTACAC+AGG - chr6_3:23966787-23966806 Msa0945240:intron 20.0%
!!! ACATTTATTTTTACTACACA+GGG - chr6_3:23966788-23966807 Msa0945240:intron 20.0%
!!! AATTTTTCCTAGGAAAATAT+AGG + chr6_3:23966898-23966917 None:intergenic 20.0%
!!! TTTTCATTATTTCAGAACAT+AGG - chr6_3:23967515-23967534 Msa0945240:intron 20.0%
!!! GATAGGTTTTTATTCATAAT+TGG - chr6_3:23967622-23967641 Msa0945240:CDS 20.0%
!!! AGATCATTTTCATTGTTTAA+AGG + chr6_3:23967979-23967998 None:intergenic 20.0%
!! TCTTCGTTTATTAATAACTT+TGG + chr6_3:23968856-23968875 None:intergenic 20.0%
!!! AATATTGGTTTTGTTGTTAT+TGG - chr6_3:23968967-23968986 Msa0945240:intron 20.0%
!! GTAAAAGTTATAAGCATATT+AGG - chr6_3:23969352-23969371 Msa0945240:intron 20.0%
!! TACAGATAAAATAATAGTCA+AGG + chr6_3:23969489-23969508 None:intergenic 20.0%
!! AATAGTCTAAACAAATACAT+TGG + chr6_3:23969610-23969629 None:intergenic 20.0%
!!! GTATTTGTTTAGACTATTTT+TGG - chr6_3:23969612-23969631 Msa0945240:intron 20.0%
!! AGGTTAGCATTAAAAATATT+TGG + chr6_3:23969681-23969700 None:intergenic 20.0%
!! TTCTCAAATAATTATGCAAA+CGG - chr6_3:23970243-23970262 Msa0945240:CDS 20.0%
!!! ATTTTGATCTTATAGCTTAT+AGG + chr6_3:23970802-23970821 None:intergenic 20.0%
!!! AACTAATTATTTTGCATAAG+GGG + chr6_3:23970843-23970862 None:intergenic 20.0%
!!! CAAACTAATTATTTTGCATA+AGG + chr6_3:23970845-23970864 None:intergenic 20.0%
!!! TATGCAAAATAATTAGTTTG+TGG - chr6_3:23970845-23970864 Msa0945240:intron 20.0%
!!! ATAATTAGTTTGTGGTATAT+TGG - chr6_3:23970853-23970872 Msa0945240:intron 20.0%
!! AAAATTCCAAATGATAATCA+GGG - chr6_3:23971279-23971298 Msa0945240:CDS 20.0%
!! TTAAAAATAAAGACTTGATC+TGG + chr6_3:23971341-23971360 None:intergenic 20.0%
!!! CAACAGAAACATATTTTTTT+AGG + chr6_3:23971967-23971986 None:intergenic 20.0%
!! AAACAATATGCAAAAGAAAT+GGG + chr6_3:23972631-23972650 None:intergenic 20.0%
!! TAAACAATATGCAAAAGAAA+TGG + chr6_3:23972632-23972651 None:intergenic 20.0%
! CTAATTACCAATAAATACAC+CGG + chr6_3:23965781-23965800 None:intergenic 25.0%
!! GGTGTATTTATTGGTAATTA+GGG - chr6_3:23965780-23965799 Msa0945240:CDS 25.0%
!!! TTTATTGGTAATTAGGGTTT+TGG - chr6_3:23965786-23965805 Msa0945240:CDS 25.0%
!! TGATCATTGTAGATTTTTGT+TGG - chr6_3:23965825-23965844 Msa0945240:CDS 25.0%
!! GATCATTGTAGATTTTTGTT+GGG - chr6_3:23965826-23965845 Msa0945240:CDS 25.0%
!! GAAAAGTTGAATTTTACTCT+TGG + chr6_3:23966224-23966243 None:intergenic 25.0%
! TAGAGATTAATGAGTTGTAT+AGG - chr6_3:23966325-23966344 Msa0945240:CDS 25.0%
! AGAGATTAATGAGTTGTATA+GGG - chr6_3:23966326-23966345 Msa0945240:CDS 25.0%
! TACAACAATAACAACTAACT+AGG + chr6_3:23966419-23966438 None:intergenic 25.0%
! AATAGATGCTTATGATCAAA+CGG - chr6_3:23966669-23966688 Msa0945240:intron 25.0%
!! TAACACAAGTAATTTTTCCT+AGG + chr6_3:23966908-23966927 None:intergenic 25.0%
! GAAAAGATGTACAACAAAAA+GGG + chr6_3:23966991-23967010 None:intergenic 25.0%
! AGAAAAGATGTACAACAAAA+AGG + chr6_3:23966992-23967011 None:intergenic 25.0%
!!! TTTTTGTTGTACATCTTTTC+TGG - chr6_3:23966991-23967010 Msa0945240:CDS 25.0%
! GTCATGATATTGTAGTTTAA+TGG - chr6_3:23967244-23967263 Msa0945240:CDS 25.0%
! TTATATACCTCAATTACTTC+AGG + chr6_3:23967475-23967494 None:intergenic 25.0%
! ATCCTTTACAAAATTATCCT+AGG + chr6_3:23967584-23967603 None:intergenic 25.0%
! AACAAATCAATTAAACTAGC+AGG + chr6_3:23967659-23967678 None:intergenic 25.0%
! ACAAATAGAATGATTCAAAG+TGG + chr6_3:23967781-23967800 None:intergenic 25.0%
!! CATGCATTTTCAAAAAAGTT+TGG + chr6_3:23967807-23967826 None:intergenic 25.0%
! TTTACAGCACATTGAAAAAT+TGG - chr6_3:23967836-23967855 Msa0945240:intron 25.0%
!!! AGTTTGTTTTTGAAAGAACA+AGG - chr6_3:23968157-23968176 Msa0945240:intron 25.0%
! TCATTAAGATTATCCTATCA+AGG - chr6_3:23968419-23968438 Msa0945240:intron 25.0%
!!! GATCATTTTATTTCCTTGAT+AGG + chr6_3:23968435-23968454 None:intergenic 25.0%
! TCGTATCAAATAATGTATAG+CGG + chr6_3:23968590-23968609 None:intergenic 25.0%
! AACACTTGATCACATTAAAA+GGG + chr6_3:23968787-23968806 None:intergenic 25.0%
!! AAAAATAGTTTTCCAGAGTT+CGG - chr6_3:23968903-23968922 Msa0945240:intron 25.0%
! AAAATGTAAGTCAACAATCT+CGG - chr6_3:23968931-23968950 Msa0945240:intron 25.0%
! TTGGTGAAAAATATCTTGTT+TGG - chr6_3:23969631-23969650 Msa0945240:intron 25.0%
!! TAACCTTTTAAACCTGAAAT+TGG - chr6_3:23969695-23969714 Msa0945240:intron 25.0%
!! AACCTTTTAAACCTGAAATT+GGG - chr6_3:23969696-23969715 Msa0945240:intron 25.0%
!! AATTTAAAATCCCCAATTTC+AGG + chr6_3:23969710-23969729 None:intergenic 25.0%
!!! TTAAATTTCACGCTTTTTGA+AGG - chr6_3:23969723-23969742 Msa0945240:intron 25.0%
! AAGAACATTTATTGTCTATC+AGG + chr6_3:23969932-23969951 None:intergenic 25.0%
! ATAGTTGATTGAGATCATTA+TGG + chr6_3:23970053-23970072 None:intergenic 25.0%
! TGCATAATTATTTGAGAAGA+AGG + chr6_3:23970241-23970260 None:intergenic 25.0%
! TCTCAAATAATTATGCAAAC+GGG - chr6_3:23970244-23970263 Msa0945240:CDS 25.0%
!! CAAACGGGATATTTTATAAA+TGG - chr6_3:23970259-23970278 Msa0945240:CDS 25.0%
! GAAGTTAATCACATAATTGT+CGG - chr6_3:23970351-23970370 Msa0945240:intron 25.0%
!!! TTTTTTTCAATCAAGGTTAC+AGG - chr6_3:23970625-23970644 Msa0945240:intron 25.0%
!!! TTTTTTCAATCAAGGTTACA+GGG - chr6_3:23970626-23970645 Msa0945240:intron 25.0%
! ATAAGCTCATTTGACTAAAA+AGG + chr6_3:23970770-23970789 None:intergenic 25.0%
! GTATATTGGAGTGATTATTA+TGG - chr6_3:23970867-23970886 Msa0945240:intron 25.0%
!! ACCATATCATTTTCAAATAC+AGG + chr6_3:23970923-23970942 None:intergenic 25.0%
! TTACATTTCAAATGAGACAT+AGG - chr6_3:23970976-23970995 Msa0945240:intron 25.0%
! ATATTGCACATATAAGAATC+AGG + chr6_3:23971101-23971120 None:intergenic 25.0%
! ACCCTGTTATAGTATATTTA+GGG - chr6_3:23971256-23971275 Msa0945240:CDS 25.0%
! TCCCTAAATATACTATAACA+GGG + chr6_3:23971260-23971279 None:intergenic 25.0%
! TTCCCTAAATATACTATAAC+AGG + chr6_3:23971261-23971280 None:intergenic 25.0%
! GAAAATTCCAAATGATAATC+AGG - chr6_3:23971278-23971297 Msa0945240:CDS 25.0%
!!! CTGTGAAGTTTTTTTTTTTG+TGG - chr6_3:23971903-23971922 Msa0945240:intron 25.0%
! AAAAAGATGGAAAAAAAGAC+CGG + chr6_3:23971944-23971963 None:intergenic 25.0%
! TAATTTCTTCTTATCGTTGA+TGG + chr6_3:23972167-23972186 None:intergenic 25.0%
!!! TTCTAGCTTATTGAAAACAT+TGG - chr6_3:23972252-23972271 Msa0945240:intron 25.0%
!! ATATTTTCTTTTCCAATCCA+TGG + chr6_3:23972296-23972315 None:intergenic 25.0%
! TTGGAAAAGAAAATATGAAC+AGG - chr6_3:23972300-23972319 Msa0945240:CDS 25.0%
!!! AATATGAACAGGTTTTATCA+AGG - chr6_3:23972311-23972330 Msa0945240:CDS 25.0%
!!! AGAGTTGAAGGTAATTTTTT+TGG - chr6_3:23972794-23972813 Msa0945240:intron 25.0%
!!! ATATGACAAACTCTCTTTTT+TGG - chr6_3:23972891-23972910 Msa0945240:CDS 25.0%
!!! CTTTTTTGGTGTGTTTATTT+CGG - chr6_3:23972905-23972924 Msa0945240:CDS 25.0%
!!! TTTAACTTCTTTTTTCTGTG+TGG - chr6_3:23974111-23974130 Msa0945240:CDS 25.0%
! AGCAATGATTATCATATTGT+AGG - chr6_3:23974168-23974187 Msa0945240:CDS 25.0%
!!! TAATTAAGACTGGTCTTTTA+CGG - chr6_3:23974320-23974339 Msa0945240:five_prime_UTR 25.0%
! AACAGATCAAATAGATAGAT+AGG + chr6_3:23974351-23974370 None:intergenic 25.0%
!!! TTTCGCTTTTTTTCTCTTTG+GGG + chr6_3:23965154-23965173 None:intergenic 30.0%
!!! CTTTCGCTTTTTTTCTCTTT+GGG + chr6_3:23965155-23965174 None:intergenic 30.0%
!!! ACTTTCGCTTTTTTTCTCTT+TGG + chr6_3:23965156-23965175 None:intergenic 30.0%
! CAATTTGTTTAACCGAAACA+AGG - chr6_3:23965208-23965227 Msa0945240:three_prime_UTR 30.0%
AAAAAGCTATATCTTGAACC+AGG - chr6_3:23965439-23965458 Msa0945240:three_prime_UTR 30.0%
!!! GGTTTTGAAATTTAGGGTTT+TGG - chr6_3:23965492-23965511 Msa0945240:exon 30.0%
! TTTCTTCGTAATTAGGGTTT+TGG - chr6_3:23965519-23965538 Msa0945240:CDS 30.0%
! CGGTGTATTTATTGGTAATT+AGG - chr6_3:23965779-23965798 Msa0945240:CDS 30.0%
! GTAGATTTTTGTTGGGTTTA+TGG - chr6_3:23965833-23965852 Msa0945240:CDS 30.0%
! ATCTAGTTGTTGGATTGTTT+TGG - chr6_3:23965996-23966015 Msa0945240:CDS 30.0%
! TCTAGTTGTTGGATTGTTTT+GGG - chr6_3:23965997-23966016 Msa0945240:CDS 30.0%
TATACAATTCCAACTTATCC+CGG + chr6_3:23966156-23966175 None:intergenic 30.0%
TGCTACAGTAATTATACAAG+CGG + chr6_3:23966246-23966265 None:intergenic 30.0%
! GTTACTCTGATAGTTTTTCT+AGG + chr6_3:23966291-23966310 None:intergenic 30.0%
AGGAAAATATAGGTCTTGAT+AGG + chr6_3:23966888-23966907 None:intergenic 30.0%
! ATCAAGACCTATATTTTCCT+AGG - chr6_3:23966888-23966907 Msa0945240:intron 30.0%
!!! TTGTTTTGATATTCCATGAC+CGG - chr6_3:23966932-23966951 Msa0945240:CDS 30.0%
TGATGTTTCATTTACTCAGA+TGG - chr6_3:23967038-23967057 Msa0945240:CDS 30.0%
GATGTTTCATTTACTCAGAT+GGG - chr6_3:23967039-23967058 Msa0945240:CDS 30.0%
! AGTTTTCCCCAATTTTTGTT+TGG - chr6_3:23967169-23967188 Msa0945240:CDS 30.0%
TAAGAGCCAAACAAAAATTG+GGG + chr6_3:23967178-23967197 None:intergenic 30.0%
GTAAGAGCCAAACAAAAATT+GGG + chr6_3:23967179-23967198 None:intergenic 30.0%
!!! CAATTTTTGTTTGGCTCTTA+CGG - chr6_3:23967178-23967197 Msa0945240:CDS 30.0%
!!! AATTTTTGTTTGGCTCTTAC+GGG - chr6_3:23967179-23967198 Msa0945240:CDS 30.0%
TTACGAACCATTGCAAATAT+TGG - chr6_3:23967206-23967225 Msa0945240:CDS 30.0%
GCACTATTTGTGAATAATCT+TGG - chr6_3:23967301-23967320 Msa0945240:CDS 30.0%
CTATTTGTGAATAATCTTGG+TGG - chr6_3:23967304-23967323 Msa0945240:CDS 30.0%
TACTTCAGGAATGACAAATT+AGG + chr6_3:23967461-23967480 None:intergenic 30.0%
! GACCTAGGATAATTTTGTAA+AGG - chr6_3:23967579-23967598 Msa0945240:intron 30.0%
ATGAATAAAAACCTATCCGA+GGG + chr6_3:23967619-23967638 None:intergenic 30.0%
TATGAATAAAAACCTATCCG+AGG + chr6_3:23967620-23967639 None:intergenic 30.0%
ATTAAACTAGCAGGCATAAT+GGG + chr6_3:23967650-23967669 None:intergenic 30.0%
AATTAAACTAGCAGGCATAA+TGG + chr6_3:23967651-23967670 None:intergenic 30.0%
! AGTGGCAATTTTACAGATTT+TGG + chr6_3:23967707-23967726 None:intergenic 30.0%
AAAAGTTACTCACTGATATC+TGG + chr6_3:23968014-23968033 None:intergenic 30.0%
AAAATGTCTGCAAAAGAGTA+TGG + chr6_3:23968050-23968069 None:intergenic 30.0%
!! TTTTGCTTTAAATACGCAGT+CGG - chr6_3:23968089-23968108 Msa0945240:intron 30.0%
TGAATATCTCTTCGAAATTC+AGG + chr6_3:23968126-23968145 None:intergenic 30.0%
AATGAAATGAGAAAGTCCAA+CGG + chr6_3:23968404-23968423 None:intergenic 30.0%
AACAACATTGAAGGAAATTG+TGG + chr6_3:23968521-23968540 None:intergenic 30.0%
! CTGCTATTTAACAACATTGA+AGG + chr6_3:23968530-23968549 None:intergenic 30.0%
ATCGTGGATCATGAAAAATA+TGG + chr6_3:23968670-23968689 None:intergenic 30.0%
GTGATTCAAAAGATCAATCA+AGG + chr6_3:23968750-23968769 None:intergenic 30.0%
GAACACTTGATCACATTAAA+AGG + chr6_3:23968788-23968807 None:intergenic 30.0%
AGAACCAAATTATCATGCAA+AGG - chr6_3:23968873-23968892 Msa0945240:intron 30.0%
AATGCCTTTGCATGATAATT+TGG + chr6_3:23968880-23968899 None:intergenic 30.0%
!! TTTGGCTTCTGAAGTTTATA+TGG - chr6_3:23969032-23969051 Msa0945240:intron 30.0%
AAACAGTGCAGTCAAAATTA+AGG + chr6_3:23969143-23969162 None:intergenic 30.0%
GCTTCAGAAATTCATCAAAA+AGG - chr6_3:23969272-23969291 Msa0945240:intron 30.0%
!! TTCTTTTTGTTTAGACTGCA+AGG - chr6_3:23969423-23969442 Msa0945240:intron 30.0%
!! TCTTTTTGTTTAGACTGCAA+GGG - chr6_3:23969424-23969443 Msa0945240:intron 30.0%
GATAATTGACTGTTCAAAGT+AGG - chr6_3:23969538-23969557 Msa0945240:intron 30.0%
! ACCTTTTAAACCTGAAATTG+GGG - chr6_3:23969697-23969716 Msa0945240:intron 30.0%
ATTATCCTTTGTGCCAATTT+GGG - chr6_3:23969865-23969884 Msa0945240:intron 30.0%
TGATTGAGATCATTATGGAA+TGG + chr6_3:23970048-23970067 None:intergenic 30.0%
AATCATAGTGACAAAACATC+GGG + chr6_3:23970158-23970177 None:intergenic 30.0%
CAATCATAGTGACAAAACAT+CGG + chr6_3:23970159-23970178 None:intergenic 30.0%
TGATGTTACTATGATGTGTT+TGG + chr6_3:23970331-23970350 None:intergenic 30.0%
!! TTTTTCAATCAAGGTTACAG+GGG - chr6_3:23970627-23970646 Msa0945240:intron 30.0%
ATGATATGCTATAAGCTACT+TGG - chr6_3:23970667-23970686 Msa0945240:intron 30.0%
AAAAATAAGCAATAAGCTCG+TGG - chr6_3:23970720-23970739 Msa0945240:intron 30.0%
GCCTGTATTTGAAAATGATA+TGG - chr6_3:23970919-23970938 Msa0945240:intron 30.0%
TGATGCAAAAGAAGAATTTC+TGG - chr6_3:23971200-23971219 Msa0945240:intron 30.0%
CACCCTGTTATAGTATATTT+AGG - chr6_3:23971255-23971274 Msa0945240:CDS 30.0%
!! AAATATTTGTGCCACTTTCT+TGG - chr6_3:23971369-23971388 Msa0945240:intron 30.0%
TTGAACAACAGGATTACAAA+AGG - chr6_3:23971438-23971457 Msa0945240:intron 30.0%
TTACAAAAGGAATGCATTCA+TGG - chr6_3:23971451-23971470 Msa0945240:intron 30.0%
TTCAAATGCCATACATTCTA+TGG - chr6_3:23971490-23971509 Msa0945240:CDS 30.0%
CCAACAAAATGAATGAATGA+AGG + chr6_3:23971616-23971635 None:intergenic 30.0%
! CCTTCATTCATTCATTTTGT+TGG - chr6_3:23971613-23971632 Msa0945240:intron 30.0%
CAAAGATAAAATATCCAACC+TGG + chr6_3:23971773-23971792 None:intergenic 30.0%
GAATATGAAAAGTCCATTCA+AGG - chr6_3:23971820-23971839 Msa0945240:intron 30.0%
!!! GTTTCTGTTGATAGTTTTGA+AGG - chr6_3:23971977-23971996 Msa0945240:intron 30.0%
TATCTATTACCCTCTTGAAA+AGG + chr6_3:23972015-23972034 None:intergenic 30.0%
AATATGCAAAAGAAATGGGT+GGG + chr6_3:23972627-23972646 None:intergenic 30.0%
! GACTTATTTGCTAATTATGC+AGG - chr6_3:23972704-23972723 Msa0945240:intron 30.0%
!! AACTCTGAAATTAGAGTTGA+AGG - chr6_3:23972782-23972801 Msa0945240:intron 30.0%
TGTATCATAACTCCTTATCT+TGG + chr6_3:23972976-23972995 None:intergenic 30.0%
AATGAAATCTGAAAATGCCA+AGG - chr6_3:23973040-23973059 Msa0945240:intron 30.0%
! CAAATCTTTTGAACTCAGAT+TGG + chr6_3:23973130-23973149 None:intergenic 30.0%
ATCTGAGTTCAAAAGATTTG+AGG - chr6_3:23973130-23973149 Msa0945240:intron 30.0%
TGGATAAAGATAAAACACAC+AGG - chr6_3:23973453-23973472 Msa0945240:intron 30.0%
! TCAGATTCTTGAACAACTTT+TGG - chr6_3:23973487-23973506 Msa0945240:intron 30.0%
GTTTCGAATGAATGAAACAT+TGG - chr6_3:23973619-23973638 Msa0945240:intron 30.0%
GAACTGACAAAACATAACTT+TGG - chr6_3:23973890-23973909 Msa0945240:intron 30.0%
! CAAAACATAACTTTGGTGAT+CGG - chr6_3:23973897-23973916 Msa0945240:intron 30.0%
ATTATCATATTGTAGGCCAT+AGG - chr6_3:23974175-23974194 Msa0945240:CDS 30.0%
!! TTTTGATGGCACGATTTTAT+TGG - chr6_3:23974201-23974220 Msa0945240:CDS 30.0%
ATAATGTAGCTCGTCTAATA+TGG + chr6_3:23974297-23974316 None:intergenic 30.0%
AACTGAGAAGATGAAGAAGA+TGG + chr6_3:23965278-23965297 None:intergenic 35.0%
!! TCAAGATATAGCTTTTTCCC+TGG + chr6_3:23965436-23965455 None:intergenic 35.0%
CTAGAATTCGAAAAATCACC+TGG + chr6_3:23965460-23965479 None:intergenic 35.0%
TGGTGTCTTTCTTCGTAATT+AGG - chr6_3:23965512-23965531 Msa0945240:CDS 35.0%
GGTGTCTTTCTTCGTAATTA+GGG - chr6_3:23965513-23965532 Msa0945240:CDS 35.0%
!! TTCGTAATTAGGGTTTTGGT+TGG - chr6_3:23965523-23965542 Msa0945240:CDS 35.0%
!!! TCGTAATTAGGGTTTTGGTT+GGG - chr6_3:23965524-23965543 Msa0945240:CDS 35.0%
AAAGAGCAACTTTCTGATTG+CGG + chr6_3:23965699-23965718 None:intergenic 35.0%
AAACTTGTATGCTTGTGCAT+CGG - chr6_3:23965725-23965744 Msa0945240:CDS 35.0%
!!! TGAAGTTCAGGGTTTTAGTT+TGG - chr6_3:23965751-23965770 Msa0945240:CDS 35.0%
!!! AGGGTTTTAGTTTGGATTTC+CGG - chr6_3:23965759-23965778 Msa0945240:CDS 35.0%
TGGATTTCCGGTGTATTTAT+TGG - chr6_3:23965771-23965790 Msa0945240:CDS 35.0%
CTACAATGATCACACTGAAT+GGG + chr6_3:23965817-23965836 None:intergenic 35.0%
TCTACAATGATCACACTGAA+TGG + chr6_3:23965818-23965837 None:intergenic 35.0%
!! TTTTGGGAGTAATGTGTGTT+AGG - chr6_3:23965902-23965921 Msa0945240:CDS 35.0%
AAGCAAACGAATCTAGTTGT+TGG - chr6_3:23965986-23966005 Msa0945240:CDS 35.0%
AAAAAACCACATACTCGTTG+TGG + chr6_3:23966044-23966063 None:intergenic 35.0%
AATTTAACTGCGAAGTTCAG+TGG - chr6_3:23966123-23966142 Msa0945240:CDS 35.0%
TTACTGTAGCAAGTTACTAG+AGG - chr6_3:23966255-23966274 Msa0945240:CDS 35.0%
AACAACAAAAAGCAGCAACA+AGG + chr6_3:23966470-23966489 None:intergenic 35.0%
CTTCTACTATTAGACAGTGA+AGG - chr6_3:23966646-23966665 Msa0945240:intron 35.0%
TAGCATGTTCATTTACAACC+AGG - chr6_3:23966853-23966872 Msa0945240:intron 35.0%
ATGTTCATTTACAACCAGGT+TGG - chr6_3:23966857-23966876 Msa0945240:intron 35.0%
TTTGAGTGACTAGAGAAAGA+CGG + chr6_3:23967089-23967108 None:intergenic 35.0%
CGTAAGAGCCAAACAAAAAT+TGG + chr6_3:23967180-23967199 None:intergenic 35.0%
CTGTCTTCCAATATTTGCAA+TGG + chr6_3:23967216-23967235 None:intergenic 35.0%
TGCAAATATTGGAAGACAGT+AGG - chr6_3:23967217-23967236 Msa0945240:CDS 35.0%
!! AAGCAAGTTCTAGATAGTCT+CGG + chr6_3:23967377-23967396 None:intergenic 35.0%
! ACTATCTAGAACTTGCTTTG+CGG - chr6_3:23967379-23967398 Msa0945240:CDS 35.0%
TGTCATTCCTGAAGTAATTG+AGG - chr6_3:23967465-23967484 Msa0945240:CDS 35.0%
TCAGAACATAGGAGTTAGAA+TGG - chr6_3:23967526-23967545 Msa0945240:intron 35.0%
!!! TGTAGTGTCAGTTTTGGTTT+AGG + chr6_3:23967682-23967701 None:intergenic 35.0%
! GTAAAATTGCCACTTGAATC+TGG - chr6_3:23967713-23967732 Msa0945240:intron 35.0%
!! AAGAGTATTCCAGATTCAAG+TGG + chr6_3:23967725-23967744 None:intergenic 35.0%
ATTGTTTAAAGGCCGTACAA+GGG + chr6_3:23967968-23967987 None:intergenic 35.0%
GAGTGCATCAAGATAAGATT+CGG + chr6_3:23968235-23968254 None:intergenic 35.0%
!!! TGTTTTAAAACTAACCTGCC+AGG + chr6_3:23968289-23968308 None:intergenic 35.0%
!!! TCGTCACTGATTCACTTTTA+AGG + chr6_3:23968363-23968382 None:intergenic 35.0%
AAAAGTGAATCAGTGACGAA+TGG - chr6_3:23968364-23968383 Msa0945240:intron 35.0%
!!! GGATGTTATATTTTGACCGT+TGG - chr6_3:23968385-23968404 Msa0945240:intron 35.0%
TAAAGAACTTCCTCCAATTG+CGG + chr6_3:23968726-23968745 None:intergenic 35.0%
!! GGCTTTAGTTTGCTCAATAT+TGG - chr6_3:23968952-23968971 Msa0945240:intron 35.0%
!! TTTTGACTGCACTGTTTTGT+AGG - chr6_3:23969146-23969165 Msa0945240:intron 35.0%
ACAAGCAGTTCATAAGTCAA+TGG - chr6_3:23969191-23969210 Msa0945240:intron 35.0%
ATTCATCAAAAAGGCTTTCG+AGG - chr6_3:23969281-23969300 Msa0945240:intron 35.0%
!! CTTTTTGTTTAGACTGCAAG+GGG - chr6_3:23969425-23969444 Msa0945240:intron 35.0%
GAGCAAAAAATAAGCGTGTT+TGG - chr6_3:23969566-23969585 Msa0945240:intron 35.0%
!! TCCCCAATTTCAGGTTTAAA+AGG + chr6_3:23969701-23969720 None:intergenic 35.0%
GATTATCCTTTGTGCCAATT+TGG - chr6_3:23969864-23969883 Msa0945240:intron 35.0%
TGGGACTCAAAAATGCAATT+CGG + chr6_3:23970101-23970120 None:intergenic 35.0%
! CGATGTTTTGTCACTATGAT+TGG - chr6_3:23970157-23970176 Msa0945240:intron 35.0%
! TGTTTTGTCACTATGATTGG+TGG - chr6_3:23970160-23970179 Msa0945240:intron 35.0%
AATTCTCTCAACAGAACTAG+AGG + chr6_3:23970386-23970405 None:intergenic 35.0%
AACAGACATGTAAACTACTC+AGG - chr6_3:23970426-23970445 Msa0945240:CDS 35.0%
ACAGACATGTAAACTACTCA+GGG - chr6_3:23970427-23970446 Msa0945240:CDS 35.0%
AGGGACATCTTGAATTTCTT+TGG - chr6_3:23970446-23970465 Msa0945240:CDS 35.0%
GCTGATAAGCTAACTTATAG+TGG - chr6_3:23970485-23970504 Msa0945240:intron 35.0%
!! TTATAGTGGATAGCTGATAG+CGG - chr6_3:23970499-23970518 Msa0945240:intron 35.0%
CTGATTGAATTTGCAGTGTT+TGG - chr6_3:23970531-23970550 Msa0945240:intron 35.0%
! TTTTGCATAAGGGGTCTATT+TGG + chr6_3:23970834-23970853 None:intergenic 35.0%
TGGAGTGATTATTATGGCAA+AGG - chr6_3:23970873-23970892 Msa0945240:intron 35.0%
TTATGGCAAAGGATATAAGC+AGG - chr6_3:23970884-23970903 Msa0945240:intron 35.0%
TATGGCAAAGGATATAAGCA+GGG - chr6_3:23970885-23970904 Msa0945240:intron 35.0%
!! TGGTTTGCTGTTTGTTACTT+TGG - chr6_3:23970939-23970958 Msa0945240:intron 35.0%
!! CTGTTTGTTACTTTGGAAGA+TGG - chr6_3:23970946-23970965 Msa0945240:intron 35.0%
!! TGTTACTTTGGAAGATGGTA+TGG - chr6_3:23970951-23970970 Msa0945240:intron 35.0%
CATTTCAAATGAGACATAGG+AGG - chr6_3:23970979-23970998 Msa0945240:intron 35.0%
GAGACATAGGAGGTAAATTA+AGG - chr6_3:23970989-23971008 Msa0945240:intron 35.0%
ACAGAAGGACTATTGATGAA+TGG + chr6_3:23971034-23971053 None:intergenic 35.0%
ATCAATAGTCCTTCTGTTTC+TGG - chr6_3:23971037-23971056 Msa0945240:intron 35.0%
TTTGGAGGTTATGATGTGAA+TGG - chr6_3:23971064-23971083 Msa0945240:intron 35.0%
TAATTCTGGCAAACATCATG+TGG - chr6_3:23971161-23971180 Msa0945240:intron 35.0%
!! TGGCTTTAACAAACCTAACT+TGG - chr6_3:23971220-23971239 Msa0945240:CDS 35.0%
! CCTCTTTTCCATAGAATGTA+TGG + chr6_3:23971501-23971520 None:intergenic 35.0%
CCATACATTCTATGGAAAAG+AGG - chr6_3:23971498-23971517 Msa0945240:CDS 35.0%
TTGTAATGCTTCTGATGCTA+GGG - chr6_3:23971532-23971551 Msa0945240:CDS 35.0%
!! TAGGGTTGATAATGTTGCAA+AGG - chr6_3:23971550-23971569 Msa0945240:CDS 35.0%
! TATCTTGTTTGAAACCCGAA+AGG - chr6_3:23971647-23971666 Msa0945240:intron 35.0%
! ATCTTGTTTGAAACCCGAAA+GGG - chr6_3:23971648-23971667 Msa0945240:intron 35.0%
!!! TCTTGTTTTCTTTCCCCTTT+CGG + chr6_3:23971665-23971684 None:intergenic 35.0%
! GGATATTTTATCTTTGACGC+AGG - chr6_3:23971777-23971796 Msa0945240:intron 35.0%
!!! GCAAGTTTTTTCCATTTTCC+AGG + chr6_3:23971847-23971866 None:intergenic 35.0%
!!! TTTTTTGTGGTTGAGAGTAG+TGG - chr6_3:23971916-23971935 Msa0945240:intron 35.0%
! TAGCTTGCAATTCAGTAATG+CGG + chr6_3:23972207-23972226 None:intergenic 35.0%
CAATATGCAAAAGAAATGGG+TGG + chr6_3:23972628-23972647 None:intergenic 35.0%
CCAAGTTTGCAAGGAATTAT+GGG + chr6_3:23972679-23972698 None:intergenic 35.0%
CCATAATTCCTTGCAAACTT+GGG - chr6_3:23972677-23972696 Msa0945240:intron 35.0%
! TGTTTATTTCGGTCTTTTCG+AGG - chr6_3:23972916-23972935 Msa0945240:CDS 35.0%
AATATTGTGCTTGTACTTGC+AGG - chr6_3:23972941-23972960 Msa0945240:CDS 35.0%
ATACAGAAATATCGTCACTG+AGG - chr6_3:23972991-23973010 Msa0945240:intron 35.0%
TGAGTTCAAAAGATTTGAGG+AGG - chr6_3:23973133-23973152 Msa0945240:intron 35.0%
! GAGAATTGAAACTCTAGGAA+GGG - chr6_3:23973310-23973329 Msa0945240:intron 35.0%
! TTGATGTAGGGAGTCAATTT+TGG + chr6_3:23973588-23973607 None:intergenic 35.0%
! ATGCAAGCCCTAGATTTTTA+AGG - chr6_3:23973720-23973739 Msa0945240:intron 35.0%
! TGCAAGCCCTAGATTTTTAA+GGG - chr6_3:23973721-23973740 Msa0945240:intron 35.0%
TAGCTCCCCTTAAAAATCTA+GGG + chr6_3:23973730-23973749 None:intergenic 35.0%
TTAGCTCCCCTTAAAAATCT+AGG + chr6_3:23973731-23973750 None:intergenic 35.0%
CTTTGTATGATCCTCTTCAT+TGG + chr6_3:23973846-23973865 None:intergenic 35.0%
GCAACAAGATCTTTCTTCAT+GGG + chr6_3:23973941-23973960 None:intergenic 35.0%
AGCAACAAGATCTTTCTTCA+TGG + chr6_3:23973942-23973961 None:intergenic 35.0%
ATGAGGAATGTATTCTTCAG+AGG - chr6_3:23973966-23973985 Msa0945240:intron 35.0%
!! TTCTGTGTGGTTTTGCATAT+TGG - chr6_3:23974124-23974143 Msa0945240:CDS 35.0%
TCTTCATCTTCTCAGTTCAC+CGG - chr6_3:23965281-23965300 Msa0945240:three_prime_UTR 40.0%
CTTGTCTACTGCGATGAAAA+GGG - chr6_3:23965323-23965342 Msa0945240:three_prime_UTR 40.0%
TGAAAAGGGAAAGTTCCGTA+TGG - chr6_3:23965337-23965356 Msa0945240:three_prime_UTR 40.0%
!!! TAGGGTTTTGGTTGGGATTA+TGG - chr6_3:23965531-23965550 Msa0945240:CDS 40.0%
GCAATCAGAAAGTTGCTCTT+TGG - chr6_3:23965698-23965717 Msa0945240:CDS 40.0%
!!! TGCATCGGTTTTGAAGTTCA+GGG - chr6_3:23965740-23965759 Msa0945240:CDS 40.0%
GAAGTTCAGTGGCTAATTTC+CGG - chr6_3:23966134-23966153 Msa0945240:CDS 40.0%
AAGTTCAGTGGCTAATTTCC+GGG - chr6_3:23966135-23966154 Msa0945240:CDS 40.0%
!!! TTTTTTGCACTGCAGCTCTT+AGG - chr6_3:23966514-23966533 Msa0945240:intron 40.0%
AACAGCCAGTGAGAATATCT+GGG + chr6_3:23966825-23966844 None:intergenic 40.0%
!! ATATTCCATGACCGGTTTGT+GGG - chr6_3:23966940-23966959 Msa0945240:CDS 40.0%
GTTTCATTTACTCAGATGGG+TGG - chr6_3:23967042-23967061 Msa0945240:CDS 40.0%
CATATTCGTGTTAGAGCTTC+TGG - chr6_3:23967117-23967136 Msa0945240:CDS 40.0%
AAACTGTCCTATTTCAGACG+CGG + chr6_3:23967154-23967173 None:intergenic 40.0%
! TTGTGAATAATCTTGGTGGC+AGG - chr6_3:23967308-23967327 Msa0945240:CDS 40.0%
!! AGCAAGTTCTAGATAGTCTC+GGG + chr6_3:23967376-23967395 None:intergenic 40.0%
CGATGTAGCTGCTAAAAATG+AGG - chr6_3:23967422-23967441 Msa0945240:CDS 40.0%
CATAGGAGTTAGAATGGCAT+AGG - chr6_3:23967532-23967551 Msa0945240:intron 40.0%
GGATGCGAATAATAATCCCT+CGG - chr6_3:23967600-23967619 Msa0945240:intron 40.0%
CGAATAATAATCCCTCGGAT+AGG - chr6_3:23967605-23967624 Msa0945240:intron 40.0%
! TTGGTGTGTAGTGTCAGTTT+TGG + chr6_3:23967688-23967707 None:intergenic 40.0%
AGAAAGTTAGCAACTCCAGA+GGG + chr6_3:23967881-23967900 None:intergenic 40.0%
CATTGTTTAAAGGCCGTACA+AGG + chr6_3:23967969-23967988 None:intergenic 40.0%
TGAAAATGATCTACAGCGAC+TGG - chr6_3:23967987-23968006 Msa0945240:CDS 40.0%
! CTGCAAAAGAGTATGGTACA+TGG + chr6_3:23968043-23968062 None:intergenic 40.0%
! ATAGTTGCTCCAACTTGCTT+TGG + chr6_3:23968183-23968202 None:intergenic 40.0%
! ATGACAGGTCCTGTATTGAT+TGG - chr6_3:23968204-23968223 Msa0945240:intron 40.0%
TCGGTGATACCAATCAATAC+AGG + chr6_3:23968216-23968235 None:intergenic 40.0%
TATCTTGATGCACTCAACCA+TGG - chr6_3:23968240-23968259 Msa0945240:intron 40.0%
! TTTAAAACTAACCTGCCAGG+AGG + chr6_3:23968286-23968305 None:intergenic 40.0%
!! TACGAAGCACTGTCAAATTG+TGG - chr6_3:23968605-23968624 Msa0945240:intron 40.0%
CGGACTAAATATCCACATCA+AGG + chr6_3:23968706-23968725 None:intergenic 40.0%
GTGGATATTTAGTCCGCAAT+TGG - chr6_3:23968710-23968729 Msa0945240:intron 40.0%
GATATTTAGTCCGCAATTGG+AGG - chr6_3:23968713-23968732 Msa0945240:intron 40.0%
! ACATTTTTCGTTCCGAACTC+TGG + chr6_3:23968918-23968937 None:intergenic 40.0%
AAGCCAAATCATAAGCCCTA+CGG + chr6_3:23969020-23969039 None:intergenic 40.0%
GATAGATTACTCACTTCCTC+AGG + chr6_3:23969081-23969100 None:intergenic 40.0%
!! TGTTTTGTAGGTCGCTTTGA+TGG - chr6_3:23969158-23969177 Msa0945240:intron 40.0%
! GCTTTTAATGCTAGTGCTGT+AGG - chr6_3:23969216-23969235 Msa0945240:intron 40.0%
GCAGCTAGGAAGAAATATGA+AGG - chr6_3:23969246-23969265 Msa0945240:intron 40.0%
TGAGAGATGGAAGTTTGACA+GGG + chr6_3:23969762-23969781 None:intergenic 40.0%
ATGAGAGATGGAAGTTTGAC+AGG + chr6_3:23969763-23969782 None:intergenic 40.0%
CGTCTATCTATCATGAGAGA+TGG + chr6_3:23969775-23969794 None:intergenic 40.0%
TAATCAAACCTGAGACCTTG+AGG + chr6_3:23969849-23969868 None:intergenic 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr6_3:23969881-23969900 None:intergenic 40.0%
GAATGGCTACAGAAGGAAAT+AGG + chr6_3:23970031-23970050 None:intergenic 40.0%
CATTATGGAATGGCTACAGA+AGG + chr6_3:23970038-23970057 None:intergenic 40.0%
GGGACTCAAAAATGCAATTC+GGG + chr6_3:23970100-23970119 None:intergenic 40.0%
CTTGACAAAGTCACTCAGTT+GGG + chr6_3:23970120-23970139 None:intergenic 40.0%
ACTTGACAAAGTCACTCAGT+TGG + chr6_3:23970121-23970140 None:intergenic 40.0%
! GTGACTTTGTCAAGTTTGCT+TGG - chr6_3:23970126-23970145 Msa0945240:intron 40.0%
! TTTTCTCTGATCACTCAGAG+TGG - chr6_3:23970204-23970223 Msa0945240:CDS 40.0%
TTTCTCTGATCACTCAGAGT+GGG - chr6_3:23970205-23970224 Msa0945240:CDS 40.0%
TTGACTAAAAAGGTCCCGTT+TGG + chr6_3:23970760-23970779 None:intergenic 40.0%
ATGGCAAAGGATATAAGCAG+GGG - chr6_3:23970886-23970905 Msa0945240:intron 40.0%
CCAAATATGCCAGAAACAGA+AGG + chr6_3:23971049-23971068 None:intergenic 40.0%
!! CCTTCTGTTTCTGGCATATT+TGG - chr6_3:23971046-23971065 Msa0945240:intron 40.0%
!! TCTGTTTCTGGCATATTTGG+AGG - chr6_3:23971049-23971068 Msa0945240:intron 40.0%
GTAAGCACAAAAGCCAAGTT+AGG + chr6_3:23971236-23971255 None:intergenic 40.0%
CACACACCCTGATTATCATT+TGG + chr6_3:23971288-23971307 None:intergenic 40.0%
CAAAAGGAATGCATTCATGG+AGG - chr6_3:23971454-23971473 Msa0945240:intron 40.0%
ATTCTATGGAAAAGAGGCTG+AGG - chr6_3:23971504-23971523 Msa0945240:CDS 40.0%
TTCTATGGAAAAGAGGCTGA+GGG - chr6_3:23971505-23971524 Msa0945240:CDS 40.0%
CTTGTAATGCTTCTGATGCT+AGG - chr6_3:23971531-23971550 Msa0945240:CDS 40.0%
! TCTTGTTTGAAACCCGAAAG+GGG - chr6_3:23971649-23971668 Msa0945240:intron 40.0%
!! CTTGTTTTCTTTCCCCTTTC+GGG + chr6_3:23971664-23971683 None:intergenic 40.0%
AAGGGGAAAGAAAACAAGAG+AGG - chr6_3:23971666-23971685 Msa0945240:intron 40.0%
TCTTGAAAAGGTCAAGCACA+GGG + chr6_3:23972003-23972022 None:intergenic 40.0%
!! TGTGCTTGACCTTTTCAAGA+GGG - chr6_3:23972003-23972022 Msa0945240:intron 40.0%
TTCATTCAACCGACGTTGTA+AGG + chr6_3:23972065-23972084 None:intergenic 40.0%
CTCATATCGCTTGATGTACT+CGG + chr6_3:23972140-23972159 None:intergenic 40.0%
AACATTGGACTCTAGTAAGC+AGG - chr6_3:23972267-23972286 Msa0945240:intron 40.0%
TTTATCAAGGCAGAAAGCTG+AGG - chr6_3:23972324-23972343 Msa0945240:CDS 40.0%
!! AGCAAAATCTGCTCTAGAGA+AGG - chr6_3:23972492-23972511 Msa0945240:intron 40.0%
AAACAAGCAGACACAGTTGA+GGG - chr6_3:23972537-23972556 Msa0945240:intron 40.0%
GTCTTAAGAGAAGAGTTCTC+TGG - chr6_3:23972565-23972584 Msa0945240:intron 40.0%
!! AGAAGAGTTCTCTGGAACTT+TGG - chr6_3:23972573-23972592 Msa0945240:intron 40.0%
AAAAGAAATGGGTGGGTATC+AGG + chr6_3:23972620-23972639 None:intergenic 40.0%
CCCATAATTCCTTGCAAACT+TGG - chr6_3:23972676-23972695 Msa0945240:intron 40.0%
CCCAAGTTTGCAAGGAATTA+TGG + chr6_3:23972680-23972699 None:intergenic 40.0%
!! GCTTCTTAGAAGTGTTGTCT+CGG - chr6_3:23972816-23972835 Msa0945240:CDS 40.0%
TTGTCTCGGCACTATTATGA+AGG - chr6_3:23972830-23972849 Msa0945240:CDS 40.0%
TGTCTCGGCACTATTATGAA+GGG - chr6_3:23972831-23972850 Msa0945240:CDS 40.0%
GGAAGCAATAGTATATCAGC+AGG - chr6_3:23973079-23973098 Msa0945240:intron 40.0%
ATTGGTACTTCTGCTCAAGA+TGG + chr6_3:23973112-23973131 None:intergenic 40.0%
GATTTGAGGAGGTTCAAGAA+AGG - chr6_3:23973144-23973163 Msa0945240:intron 40.0%
TGCTGAAAAAGAAGCTGCAA+GGG - chr6_3:23973175-23973194 Msa0945240:intron 40.0%
GAGAGGAGAATTGAAACTCT+AGG - chr6_3:23973305-23973324 Msa0945240:intron 40.0%
! GGAGAATTGAAACTCTAGGA+AGG - chr6_3:23973309-23973328 Msa0945240:intron 40.0%
AGGAAGGGAGAAAGATAATC+TGG - chr6_3:23973325-23973344 Msa0945240:intron 40.0%
AGGGAGAAAGATAATCTGGA+AGG - chr6_3:23973329-23973348 Msa0945240:intron 40.0%
!! GAAGGATTTAGAAGCACTTC+TGG - chr6_3:23973433-23973452 Msa0945240:intron 40.0%
CACATACACAGGCAAATAAC+CGG - chr6_3:23973525-23973544 Msa0945240:intron 40.0%
ACATACACAGGCAAATAACC+GGG - chr6_3:23973526-23973545 Msa0945240:intron 40.0%
CTTAGTCAGCTCTTGATGTA+GGG + chr6_3:23973600-23973619 None:intergenic 40.0%
ACTTAGTCAGCTCTTGATGT+AGG + chr6_3:23973601-23973620 None:intergenic 40.0%
AGTAAGCTAAAGACAACCGA+TGG - chr6_3:23973644-23973663 Msa0945240:intron 40.0%
!! TGCTGATTCTGTACAAGACA+TGG - chr6_3:23973697-23973716 Msa0945240:intron 40.0%
!! GCAAGCCCTAGATTTTTAAG+GGG - chr6_3:23973722-23973741 Msa0945240:intron 40.0%
TAGATTGAACCACCATCTTC+TGG + chr6_3:23973791-23973810 None:intergenic 40.0%
! AGATGGTGGTTCAATCTATG+AGG - chr6_3:23973793-23973812 Msa0945240:intron 40.0%
! GATGGTGGTTCAATCTATGA+GGG - chr6_3:23973794-23973813 Msa0945240:intron 40.0%
AGATCTTGTTGCTCTGTATG+AGG - chr6_3:23973949-23973968 Msa0945240:intron 40.0%
GTATTCTTCAGAGGTGATGA+CGG - chr6_3:23973975-23973994 Msa0945240:intron 40.0%
TATTCTTCAGAGGTGATGAC+GGG - chr6_3:23973976-23973995 Msa0945240:intron 40.0%
!! TAGGCCATAGGAAGTTTTGA+TGG - chr6_3:23974187-23974206 Msa0945240:CDS 40.0%
TAGACAAGGCGAATAGCTCT+CGG + chr6_3:23965311-23965330 None:intergenic 45.0%
! CCTTTTCATCGCAGTAGACA+AGG + chr6_3:23965325-23965344 None:intergenic 45.0%
CCTTGTCTACTGCGATGAAA+AGG - chr6_3:23965322-23965341 Msa0945240:three_prime_UTR 45.0%
! GACGAGTTGAAGAATAGCGA+CGG + chr6_3:23965372-23965391 None:intergenic 45.0%
CGCTATTCTTCAACTCGTCA+AGG - chr6_3:23965373-23965392 Msa0945240:three_prime_UTR 45.0%
CAAACAGAAACGACACCGAT+GGG + chr6_3:23965401-23965420 None:intergenic 45.0%
ACAAACAGAAACGACACCGA+TGG + chr6_3:23965402-23965421 None:intergenic 45.0%
!! ATCGGTGTCGTTTCTGTTTG+TGG - chr6_3:23965401-23965420 Msa0945240:three_prime_UTR 45.0%
!!! GTGCATCGGTTTTGAAGTTC+AGG - chr6_3:23965739-23965758 Msa0945240:CDS 45.0%
GTTTGACCACAACGAGTATG+TGG - chr6_3:23966035-23966054 Msa0945240:CDS 45.0%
GGCTAATTTCCGGGATAAGT+TGG - chr6_3:23966144-23966163 Msa0945240:CDS 45.0%
ATCCAAAGCCCTTTGGTACA+GGG + chr6_3:23966577-23966596 None:intergenic 45.0%
GAACAGCCAGTGAGAATATC+TGG + chr6_3:23966826-23966845 None:intergenic 45.0%
!! GATATTCCATGACCGGTTTG+TGG - chr6_3:23966939-23966958 Msa0945240:CDS 45.0%
TCAACAACAGACCCACAAAC+CGG + chr6_3:23966954-23966973 None:intergenic 45.0%
TCAGATGGGTGGTATAGATG+AGG - chr6_3:23967053-23967072 Msa0945240:CDS 45.0%
! AAGACTTCCGCGTCTGAAAT+AGG - chr6_3:23967144-23967163 Msa0945240:CDS 45.0%
!! TTTGTTTGGCTCTTACGGGT+AGG - chr6_3:23967183-23967202 Msa0945240:CDS 45.0%
! TTGGTGGCAGGACTTCTATT+TGG - chr6_3:23967320-23967339 Msa0945240:CDS 45.0%
!! GCAAGTTCTAGATAGTCTCG+GGG + chr6_3:23967375-23967394 None:intergenic 45.0%
TTGCTTTGCGGTCTGTTCAA+GGG - chr6_3:23967391-23967410 Msa0945240:CDS 45.0%
AGTTAGAATGGCATAGGCAC+AGG - chr6_3:23967538-23967557 Msa0945240:intron 45.0%
ACATATGTAGCAGACGACCT+AGG - chr6_3:23967564-23967583 Msa0945240:intron 45.0%
TGTGAAGCTTATTTCCCCTC+TGG - chr6_3:23967863-23967882 Msa0945240:intron 45.0%
GAAAGTTAGCAACTCCAGAG+GGG + chr6_3:23967880-23967899 None:intergenic 45.0%
CAGAAAGTTAGCAACTCCAG+AGG + chr6_3:23967882-23967901 None:intergenic 45.0%
ATCTGGGAATAGAGCACGAA+TGG + chr6_3:23967932-23967951 None:intergenic 45.0%
TTCGTGCTCTATTCCCAGAT+AGG - chr6_3:23967932-23967951 Msa0945240:CDS 45.0%
TCGTGCTCTATTCCCAGATA+GGG - chr6_3:23967933-23967952 Msa0945240:CDS 45.0%
AGAACAAGGCCAAAGCAAGT+TGG - chr6_3:23968171-23968190 Msa0945240:intron 45.0%
GTTGGAGCAACTATGATGAC+AGG - chr6_3:23968189-23968208 Msa0945240:intron 45.0%
GGAGGAAGAAATAGTAGGCA+CGG + chr6_3:23968268-23968287 None:intergenic 45.0%
! TGCCTACTATTTCTTCCTCC+TGG - chr6_3:23968268-23968287 Msa0945240:intron 45.0%
TGCCAGGAGGAAGAAATAGT+AGG + chr6_3:23968273-23968292 None:intergenic 45.0%
! TACTATTTCTTCCTCCTGGC+AGG - chr6_3:23968272-23968291 Msa0945240:intron 45.0%
CATGATCCACGATTGACAAC+TGG - chr6_3:23968677-23968696 Msa0945240:intron 45.0%
AGGAAACCAGTTGTCAATCG+TGG + chr6_3:23968686-23968705 None:intergenic 45.0%
! GACAACTGGTTTCCTTGATG+TGG - chr6_3:23968691-23968710 Msa0945240:intron 45.0%
AGATTACTCACTTCCTCAGG+TGG + chr6_3:23969078-23969097 None:intergenic 45.0%
AATGCTAGTGCTGTAGGAGT+TGG - chr6_3:23969222-23969241 Msa0945240:intron 45.0%
TTGTTTAGACTGCAAGGGGT+TGG - chr6_3:23969429-23969448 Msa0945240:intron 45.0%
GAGAGATGGAAGTTTGACAG+GGG + chr6_3:23969761-23969780 None:intergenic 45.0%
CATGATAGATAGACGCCACT+TGG - chr6_3:23969780-23969799 Msa0945240:intron 45.0%
ATCCTTTGTGCCAATTTGGG+TGG - chr6_3:23969868-23969887 Msa0945240:intron 45.0%
TCCTTTGTGCCAATTTGGGT+GGG - chr6_3:23969869-23969888 Msa0945240:intron 45.0%
!! TTTCTGCCGCTTGTTATCAG+CGG + chr6_3:23969967-23969986 None:intergenic 45.0%
TTCTCTGATCACTCAGAGTG+GGG - chr6_3:23970206-23970225 Msa0945240:CDS 45.0%
TGGCAAAGGATATAAGCAGG+GGG - chr6_3:23970887-23970906 Msa0945240:intron 45.0%
! TATAAGCAGGGGGGTTTTAC+TGG - chr6_3:23970897-23970916 Msa0945240:intron 45.0%
ACCTGGTCGTCAATTCAACA+AGG + chr6_3:23971756-23971775 None:intergenic 45.0%
TGTTGAATTGACGACCAGGT+TGG - chr6_3:23971756-23971775 Msa0945240:intron 45.0%
GAAAAGTCCATTCAAGGTCC+TGG - chr6_3:23971826-23971845 Msa0945240:intron 45.0%
! CCATTTTCCAGGACCTTGAA+TGG + chr6_3:23971836-23971855 None:intergenic 45.0%
CCATTCAAGGTCCTGGAAAA+TGG - chr6_3:23971833-23971852 Msa0945240:intron 45.0%
TTGCTGTCTTCTTGCAGCAA+AGG - chr6_3:23971863-23971882 Msa0945240:intron 45.0%
CTCTTGAAAAGGTCAAGCAC+AGG + chr6_3:23972004-23972023 None:intergenic 45.0%
!! CTGTGCTTGACCTTTTCAAG+AGG - chr6_3:23972002-23972021 Msa0945240:intron 45.0%
GTTCTCTTGCCTTACAACGT+CGG - chr6_3:23972053-23972072 Msa0945240:CDS 45.0%
AGATGACCTTACTGACCAAG+CGG - chr6_3:23972089-23972108 Msa0945240:CDS 45.0%
CGAGTACATCAAGCGATATG+AGG - chr6_3:23972138-23972157 Msa0945240:CDS 45.0%
CTCTAGTAAGCAGGAATCCA+TGG - chr6_3:23972276-23972295 Msa0945240:intron 45.0%
GTAAGCAGGAATCCATGGAT+TGG - chr6_3:23972281-23972300 Msa0945240:intron 45.0%
AGAGAAGGCAGCAATTGTTC+AGG - chr6_3:23972507-23972526 Msa0945240:intron 45.0%
CAAACAAGCAGACACAGTTG+AGG - chr6_3:23972536-23972555 Msa0945240:intron 45.0%
AGTCAGAACCCAAGTTTGCA+AGG + chr6_3:23972688-23972707 None:intergenic 45.0%
TGCTTCCCTCTCATATGACT+GGG + chr6_3:23973066-23973085 None:intergenic 45.0%
TTGCTTCCCTCTCATATGAC+TGG + chr6_3:23973067-23973086 None:intergenic 45.0%
CTGCTGAAAAAGAAGCTGCA+AGG - chr6_3:23973174-23973193 Msa0945240:intron 45.0%
AAAGACTGGCACAGATTGAG+AGG - chr6_3:23973279-23973298 Msa0945240:intron 45.0%
AAGACTGGCACAGATTGAGA+GGG - chr6_3:23973280-23973299 Msa0945240:intron 45.0%
AGGTGAATTGCAGAGAGCAA+CGG - chr6_3:23973349-23973368 Msa0945240:intron 45.0%
! GAAGGTGCAACAAAGAGAGA+AGG - chr6_3:23973415-23973434 Msa0945240:intron 45.0%
!! ACTTTTGGAAACAGAGCGTG+AGG - chr6_3:23973502-23973521 Msa0945240:intron 45.0%
AACCGATGGTAAGCGATTGA+GGG - chr6_3:23973658-23973677 Msa0945240:intron 45.0%
TTGAGGGCAGAGAATGACAA+TGG - chr6_3:23973674-23973693 Msa0945240:intron 45.0%
! TCTTCTGGCTGTGTGTACTT+AGG + chr6_3:23973776-23973795 None:intergenic 45.0%
AAGTACACACAGCCAGAAGA+TGG - chr6_3:23973776-23973795 Msa0945240:intron 45.0%
! TTCAATCTATGAGGGTGCAG+AGG - chr6_3:23973802-23973821 Msa0945240:intron 45.0%
TAGTCAGCAAGCCAATGAAG+AGG - chr6_3:23973832-23973851 Msa0945240:intron 45.0%
TCAGTTCTCGCTTAAGCTTC+GGG + chr6_3:23973877-23973896 None:intergenic 45.0%
GTCAGTTCTCGCTTAAGCTT+CGG + chr6_3:23973878-23973897 None:intergenic 45.0%
! ATTCTTCAGAGGTGATGACG+GGG - chr6_3:23973977-23973996 Msa0945240:intron 45.0%
!!! TGATGACGGGGGTTTTGAAA+AGG - chr6_3:23973989-23974008 Msa0945240:intron 45.0%
CGGAGTGATAAAGAAGCAAC+AGG + chr6_3:23974025-23974044 None:intergenic 45.0%
GCTTCTTTATCACTCCGTCT+AGG - chr6_3:23974028-23974047 Msa0945240:intron 45.0%
GAGATCTAGACAGACCTAGA+CGG + chr6_3:23974045-23974064 None:intergenic 45.0%
TCTAGATCTCATTGATGCCG+TGG - chr6_3:23974055-23974074 Msa0945240:CDS 45.0%
ATGCCGTGGTTACTGACATA+CGG - chr6_3:23974069-23974088 Msa0945240:CDS 45.0%
AGTCCGTATGTCAGTAACCA+CGG + chr6_3:23974075-23974094 None:intergenic 45.0%
CGTGCCATCAAAACTTCCTA+TGG + chr6_3:23974194-23974213 None:intergenic 45.0%
!! ATAATAAATGTTAAAATATT+AGG - chr6_3:23967491-23967510 Msa0945240:intron 5.0%
TGAAGAATAGCGACGGCTTC+TGG + chr6_3:23965365-23965384 None:intergenic 50.0%
CAACTCGTCAAGGAACCCAT+CGG - chr6_3:23965383-23965402 Msa0945240:three_prime_UTR 50.0%
! TAGGCCTTATCCCACTAAGC+GGG + chr6_3:23966400-23966419 None:intergenic 50.0%
! CTAGGCCTTATCCCACTAAG+CGG + chr6_3:23966401-23966420 None:intergenic 50.0%
ACACATCGACCCTGTACCAA+AGG - chr6_3:23966565-23966584 Msa0945240:intron 50.0%
CACATCGACCCTGTACCAAA+GGG - chr6_3:23966566-23966585 Msa0945240:intron 50.0%
CATCCAAAGCCCTTTGGTAC+AGG + chr6_3:23966578-23966597 None:intergenic 50.0%
!! GTACCAAAGGGCTTTGGATG+TGG - chr6_3:23966578-23966597 Msa0945240:intron 50.0%
TCAAGTGCGGTCCTCTTCAA+AGG + chr6_3:23966610-23966629 None:intergenic 50.0%
TTGAAGAGGACCGCACTTGA+TGG - chr6_3:23966610-23966629 Msa0945240:intron 50.0%
GTACTCCGTTCCATCAAGTG+CGG + chr6_3:23966623-23966642 None:intergenic 50.0%
CAGCACCCAGATATTCTCAC+TGG - chr6_3:23966817-23966836 Msa0945240:intron 50.0%
CTTGATAGGATGTGCCAACC+TGG + chr6_3:23966874-23966893 None:intergenic 50.0%
CTTGCTTTGCGGTCTGTTCA+AGG - chr6_3:23967390-23967409 Msa0945240:CDS 50.0%
! GGGTGAAGCATTCCCTATCT+GGG + chr6_3:23967948-23967967 None:intergenic 50.0%
! AGGGTGAAGCATTCCCTATC+TGG + chr6_3:23967949-23967968 None:intergenic 50.0%
GGGAATGCTTCACCCTTGTA+CGG - chr6_3:23967953-23967972 Msa0945240:CDS 50.0%
AAATAGTAGGCACGGCACCA+TGG + chr6_3:23968260-23968279 None:intergenic 50.0%
!! TTGAAGAAGCAGAGTGCCGT+AGG - chr6_3:23969001-23969020 Msa0945240:intron 50.0%
!! TGAAGAAGCAGAGTGCCGTA+GGG - chr6_3:23969002-23969021 Msa0945240:intron 50.0%
GTGCCGTAGGGCTTATGATT+TGG - chr6_3:23969014-23969033 Msa0945240:intron 50.0%
TAGATAGACGCCACTTGGCT+TGG - chr6_3:23969785-23969804 Msa0945240:intron 50.0%
TCAAACCTGAGACCTTGAGG+AGG + chr6_3:23969846-23969865 None:intergenic 50.0%
TCTCTGATCACTCAGAGTGG+GGG - chr6_3:23970207-23970226 Msa0945240:CDS 50.0%
GCAATAAGCTCGTGGCTAAG+TGG - chr6_3:23970728-23970747 Msa0945240:intron 50.0%
ATAAGCTCGTGGCTAAGTGG+CGG - chr6_3:23970731-23970750 Msa0945240:intron 50.0%
GCTAAGTGGCGGTTACCAAA+CGG - chr6_3:23970742-23970761 Msa0945240:intron 50.0%
CTAAGTGGCGGTTACCAAAC+GGG - chr6_3:23970743-23970762 Msa0945240:intron 50.0%
GGCAAAGGATATAAGCAGGG+GGG - chr6_3:23970888-23970907 Msa0945240:intron 50.0%
!! TGCCACTTTCTTGGAGTGTG+AGG - chr6_3:23971378-23971397 Msa0945240:intron 50.0%
TGCCTCACACTCCAAGAAAG+TGG + chr6_3:23971383-23971402 None:intergenic 50.0%
! GCCTTGTTGAATTGACGACC+AGG - chr6_3:23971752-23971771 Msa0945240:intron 50.0%
! GTGGTTGAGAGTAGTGGAAC+CGG - chr6_3:23971922-23971941 Msa0945240:intron 50.0%
! CTCGGACTTTTCACCTTCAC+TGG + chr6_3:23972122-23972141 None:intergenic 50.0%
TCAAGGCAGAAAGCTGAGGA+AGG - chr6_3:23972328-23972347 Msa0945240:CDS 50.0%
TGCACTACTGCGGGATTTGA+GGG + chr6_3:23972377-23972396 None:intergenic 50.0%
ACAAGCTCAGTCTGCTCAAG+AGG - chr6_3:23972426-23972445 Msa0945240:intron 50.0%
AGGAGGCTGATGAGTGGAAA+CGG - chr6_3:23972446-23972465 Msa0945240:intron 50.0%
AGAAATGGGTGGGTATCAGG+AGG + chr6_3:23972617-23972636 None:intergenic 50.0%
AGGCTGCTGAGTCCAAGATA+AGG - chr6_3:23972961-23972980 Msa0945240:intron 50.0%
CAAGGCCCAGTCATATGAGA+GGG - chr6_3:23973058-23973077 Msa0945240:intron 50.0%
CTGAAGTGGCTGATAGAGCA+CGG - chr6_3:23973201-23973220 Msa0945240:intron 50.0%
TGAAGTGGCTGATAGAGCAC+GGG - chr6_3:23973202-23973221 Msa0945240:intron 50.0%
GAAGAGTGAGATGCAGAGAC+TGG - chr6_3:23973250-23973269 Msa0945240:intron 50.0%
TGAGATGCAGAGACTGGCAA+TGG - chr6_3:23973256-23973275 Msa0945240:intron 50.0%
GAGACTGGCAATGGAAAGAC+TGG - chr6_3:23973265-23973284 Msa0945240:intron 50.0%
! GAGAGCAACGGATTCAGAGA+AGG - chr6_3:23973361-23973380 Msa0945240:intron 50.0%
AGTTGCGAAGCTCGAAGAGA+AGG - chr6_3:23973397-23973416 Msa0945240:intron 50.0%
CAACCGATGGTAAGCGATTG+AGG - chr6_3:23973657-23973676 Msa0945240:intron 50.0%
TGCCCTCAATCGCTTACCAT+CGG + chr6_3:23973663-23973682 None:intergenic 50.0%
TAAGGGGAGCTAAAAGAGCC+AGG - chr6_3:23973738-23973757 Msa0945240:intron 50.0%
!! CTTAGGACTGGTTGTACTCC+TGG + chr6_3:23973759-23973778 None:intergenic 50.0%
TGGCTGTGTGTACTTAGGAC+TGG + chr6_3:23973771-23973790 None:intergenic 50.0%
TACACACAGCCAGAAGATGG+TGG - chr6_3:23973779-23973798 Msa0945240:intron 50.0%
TTCTCGCTTAAGCTTCGGGA+TGG + chr6_3:23973873-23973892 None:intergenic 50.0%
!! TTCTTCAGAGGTGATGACGG+GGG - chr6_3:23973978-23973997 Msa0945240:intron 50.0%
!! CGGCGGGGTTTTCCTTGTTT+CGG + chr6_3:23965223-23965242 None:intergenic 55.0%
GATGAAGAAGATGGCCTCGC+CGG + chr6_3:23965269-23965288 None:intergenic 55.0%
ACAAGGCGAATAGCTCTCGG+TGG + chr6_3:23965308-23965327 None:intergenic 55.0%
CGACGGCTTCTGGATCCATA+CGG + chr6_3:23965355-23965374 None:intergenic 55.0%
CTTATCCCACTAAGCGGGGT+CGG + chr6_3:23966395-23966414 None:intergenic 55.0%
! AGGCCTTATCCCACTAAGCG+GGG + chr6_3:23966399-23966418 None:intergenic 55.0%
CTGCAGCTCTTAGGAAGCAG+TGG - chr6_3:23966523-23966542 Msa0945240:intron 55.0%
CAGCTCTTAGGAAGCAGTGG+TGG - chr6_3:23966526-23966545 Msa0945240:intron 55.0%
GACCCTGTACCAAAGGGCTT+TGG - chr6_3:23966572-23966591 Msa0945240:intron 55.0%
GCTCCACATCCAAAGCCCTT+TGG + chr6_3:23966584-23966603 None:intergenic 55.0%
! TGTGGAGCGCACCTTTGAAG+AGG - chr6_3:23966596-23966615 Msa0945240:intron 55.0%
GAGGACCGCACTTGATGGAA+CGG - chr6_3:23966615-23966634 Msa0945240:intron 55.0%
ACAGACCCACAAACCGGTCA+TGG + chr6_3:23966948-23966967 None:intergenic 55.0%
! CTTCCTCAGGTGGCTTGGAA+CGG + chr6_3:23969068-23969087 None:intergenic 55.0%
ACTCACTTCCTCAGGTGGCT+TGG + chr6_3:23969073-23969092 None:intergenic 55.0%
!! CTGTAGGAGTTGGTGCAGCT+AGG - chr6_3:23969232-23969251 Msa0945240:intron 55.0%
!! GACTGCAAGGGGTTGGTTTG+TGG - chr6_3:23969436-23969455 Msa0945240:intron 55.0%
!! TTGGCTTGGCTTGGTGGTGT+TGG - chr6_3:23969799-23969818 Msa0945240:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG + chr6_3:23969832-23969851 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG - chr6_3:23969831-23969850 Msa0945240:intron 55.0%
GCCCACCCAAATTGGCACAA+AGG + chr6_3:23969873-23969892 None:intergenic 55.0%
CTCTGATCACTCAGAGTGGG+GGG - chr6_3:23970208-23970227 Msa0945240:CDS 55.0%
TTCCAGCCGCTTGGTCAGTA+AGG + chr6_3:23972098-23972117 None:intergenic 55.0%
GCAAGCTAATCGTCGCTCAC+TGG - chr6_3:23972219-23972238 Msa0945240:intron 55.0%
CTGCACTACTGCGGGATTTG+AGG + chr6_3:23972378-23972397 None:intergenic 55.0%
TTGCTTCGGCTGCACTACTG+CGG + chr6_3:23972387-23972406 None:intergenic 55.0%
TAGTGCAGCCGAAGCAAGGT+TGG - chr6_3:23972390-23972409 Msa0945240:CDS 55.0%
TGCTGCTGCCAACCTTGCTT+CGG + chr6_3:23972401-23972420 None:intergenic 55.0%
AAGCAAGGTTGGCAGCAGCA+AGG - chr6_3:23972401-23972420 Msa0945240:CDS 55.0%
AGCAAGGTTGGCAGCAGCAA+GGG - chr6_3:23972402-23972421 Msa0945240:CDS 55.0%
AGCTCAGTCTGCTCAAGAGG+AGG - chr6_3:23972429-23972448 Msa0945240:intron 55.0%
CTCAAGAGGAGGCTGATGAG+TGG - chr6_3:23972440-23972459 Msa0945240:intron 55.0%
CCTCTCATATGACTGGGCCT+TGG + chr6_3:23973060-23973079 None:intergenic 55.0%
CCAAGGCCCAGTCATATGAG+AGG - chr6_3:23973057-23973076 Msa0945240:intron 55.0%
AGCTGCAAGGGCTACTGAAG+TGG - chr6_3:23973187-23973206 Msa0945240:intron 55.0%
TGAAGCAGGCATGGCTCAGA+AGG - chr6_3:23973226-23973245 Msa0945240:intron 55.0%
CACAGATTGAGAGGGCTGAG+AGG - chr6_3:23973288-23973307 Msa0945240:intron 55.0%
AGAGCGTGAGGCACATACAC+AGG - chr6_3:23973514-23973533 Msa0945240:intron 55.0%
TCTGCAGCTACAGTCTGCAC+AGG - chr6_3:23973562-23973581 Msa0945240:intron 55.0%
AGATTGCGGTGACGCATCGG+CGG + chr6_3:23965240-23965259 None:intergenic 60.0%
CGGAGATTGCGGTGACGCAT+CGG + chr6_3:23965243-23965262 None:intergenic 60.0%
CGATGCGTCACCGCAATCTC+CGG - chr6_3:23965241-23965260 Msa0945240:three_prime_UTR 60.0%
GCGAATAGCTCTCGGTGGTC+CGG + chr6_3:23965303-23965322 None:intergenic 60.0%
TGTTTGTGGTCGTGCTCGCC+AGG - chr6_3:23965415-23965434 Msa0945240:three_prime_UTR 60.0%
GTTTGTGGTCGTGCTCGCCA+GGG - chr6_3:23965416-23965435 Msa0945240:three_prime_UTR 60.0%
ACTAAGCGGGGTCGGCTACA+TGG + chr6_3:23966387-23966406 None:intergenic 60.0%
ATGTAGCCGACCCCGCTTAG+TGG - chr6_3:23966386-23966405 Msa0945240:CDS 60.0%
TGTAGCCGACCCCGCTTAGT+GGG - chr6_3:23966387-23966406 Msa0945240:CDS 60.0%
CGACCCCGCTTAGTGGGATA+AGG - chr6_3:23966393-23966412 Msa0945240:CDS 60.0%
TGACCGTTCCAAGCCACCTG+AGG - chr6_3:23969062-23969081 Msa0945240:intron 60.0%
!! AGACGCCACTTGGCTTGGCT+TGG - chr6_3:23969790-23969809 Msa0945240:intron 60.0%
CACCACCAAGCCAAGCCAAG+TGG + chr6_3:23969798-23969817 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - chr6_3:23969838-23969857 Msa0945240:intron 60.0%
! CTTGTTATCAGCGGCGGTGG+TGG + chr6_3:23969958-23969977 None:intergenic 60.0%
CCACCGCCGCTGATAACAAG+CGG - chr6_3:23969958-23969977 Msa0945240:intron 60.0%
!! CTGCCGCTTGTTATCAGCGG+CGG + chr6_3:23969964-23969983 None:intergenic 60.0%
! TGCCCTGCCAGCAGTTTTGC+TGG - chr6_3:23969990-23970009 Msa0945240:intron 60.0%
! GCCCTGCCAGCAGTTTTGCT+GGG - chr6_3:23969991-23970010 Msa0945240:intron 60.0%
GCCCAGCAAAACTGCTGGCA+GGG + chr6_3:23969995-23970014 None:intergenic 60.0%
CTCTCGCCCAGCAAAACTGC+TGG + chr6_3:23970000-23970019 None:intergenic 60.0%
! CAGCAGTTTTGCTGGGCGAG+AGG - chr6_3:23969998-23970017 Msa0945240:intron 60.0%
GACCTTACTGACCAAGCGGC+TGG - chr6_3:23972093-23972112 Msa0945240:CDS 60.0%
!! TTCACTGGCTTCCAGCCGCT+TGG + chr6_3:23972107-23972126 None:intergenic 60.0%
AAGCGGCTGGAAGCCAGTGA+AGG - chr6_3:23972106-23972125 Msa0945240:CDS 60.0%
TGCTTCGGCTGCACTACTGC+GGG + chr6_3:23972386-23972405 None:intergenic 60.0%
GCAGTAGTGCAGCCGAAGCA+AGG - chr6_3:23972386-23972405 Msa0945240:CDS 60.0%
! GATAGAGCACGGGCTGAAGC+AGG - chr6_3:23973212-23973231 Msa0945240:intron 60.0%
GCAGAGAGAGACTCTCAGCC+CGG + chr6_3:23973547-23973566 None:intergenic 60.0%
! ATTGCGGTGACGCATCGGCG+GGG + chr6_3:23965238-23965257 None:intergenic 65.0%
! GATTGCGGTGACGCATCGGC+GGG + chr6_3:23965239-23965258 None:intergenic 65.0%
!! CGCCACTTGGCTTGGCTTGG+TGG - chr6_3:23969793-23969812 Msa0945240:intron 65.0%
! GTTATCAGCGGCGGTGGTGG+TGG + chr6_3:23969955-23969974 None:intergenic 65.0%
!! CCGCTTGTTATCAGCGGCGG+TGG + chr6_3:23969961-23969980 None:intergenic 65.0%
CGCCCAGCAAAACTGCTGGC+AGG + chr6_3:23969996-23970015 None:intergenic 65.0%
! AGCACGGGCTGAAGCAGGCA+TGG - chr6_3:23973217-23973236 Msa0945240:intron 65.0%
GTCACCGCAATCTCCGGCGC+CGG - chr6_3:23965247-23965266 Msa0945240:three_prime_UTR 70.0%
! CTCGCCGGCGCCGGAGATTG+CGG + chr6_3:23965254-23965273 None:intergenic 75.0%
GAAGATGGCCTCGCCGGCGC+CGG + chr6_3:23965263-23965282 None:intergenic 75.0%
!!! CGCAATCTCCGGCGCCGGCG+AGG - chr6_3:23965252-23965271 Msa0945240:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 23965124 23974371 23965124 ID=Msa0945240;Name=Msa0945240
chr6_3 mRNA 23965124 23974371 23965124 ID=Msa0945240-mRNA-1;Parent=Msa0945240;Name=Msa0945240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=79|1|1|1|1|1|14|380|1061
chr6_3 exon 23965124 23966532 23965124 ID=Msa0945240-mRNA-1:exon:6751;Parent=Msa0945240-mRNA-1
chr6_3 exon 23966692 23966769 23966692 ID=Msa0945240-mRNA-1:exon:6750;Parent=Msa0945240-mRNA-1
chr6_3 exon 23966892 23967504 23966892 ID=Msa0945240-mRNA-1:exon:6749;Parent=Msa0945240-mRNA-1
chr6_3 exon 23967611 23967696 23967611 ID=Msa0945240-mRNA-1:exon:6748;Parent=Msa0945240-mRNA-1
chr6_3 exon 23967924 23968046 23967924 ID=Msa0945240-mRNA-1:exon:6747;Parent=Msa0945240-mRNA-1
chr6_3 exon 23970193 23970327 23970193 ID=Msa0945240-mRNA-1:exon:6746;Parent=Msa0945240-mRNA-1
chr6_3 exon 23970409 23970498 23970409 ID=Msa0945240-mRNA-1:exon:6745;Parent=Msa0945240-mRNA-1
chr6_3 exon 23971202 23971387 23971202 ID=Msa0945240-mRNA-1:exon:6744;Parent=Msa0945240-mRNA-1
chr6_3 exon 23971475 23971576 23971475 ID=Msa0945240-mRNA-1:exon:6743;Parent=Msa0945240-mRNA-1
chr6_3 exon 23972052 23972165 23972052 ID=Msa0945240-mRNA-1:exon:6742;Parent=Msa0945240-mRNA-1
chr6_3 exon 23972295 23972438 23972295 ID=Msa0945240-mRNA-1:exon:6741;Parent=Msa0945240-mRNA-1
chr6_3 exon 23972621 23972686 23972621 ID=Msa0945240-mRNA-1:exon:6740;Parent=Msa0945240-mRNA-1
chr6_3 exon 23972805 23972966 23972805 ID=Msa0945240-mRNA-1:exon:6739;Parent=Msa0945240-mRNA-1
chr6_3 exon 23974035 23974371 23974035 ID=Msa0945240-mRNA-1:exon:6738;Parent=Msa0945240-mRNA-1
chr6_3 five_prime_UTR 23974293 23974371 23974293 ID=Msa0945240-mRNA-1:five_prime_utr;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23974035 23974292 23974035 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23972805 23972966 23972805 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23972621 23972686 23972621 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23972295 23972438 23972295 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23972052 23972165 23972052 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23971475 23971576 23971475 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23971202 23971387 23971202 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23970409 23970498 23970409 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23970193 23970327 23970193 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23967924 23968046 23967924 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23967611 23967696 23967611 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23966892 23967504 23966892 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23966692 23966769 23966692 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 CDS 23965504 23966532 23965504 ID=Msa0945240-mRNA-1:cds;Parent=Msa0945240-mRNA-1
chr6_3 three_prime_UTR 23965124 23965503 23965124 ID=Msa0945240-mRNA-1:three_prime_utr;Parent=Msa0945240-mRNA-1
Gene Sequence

>Msa0945240

ATGTTCAATTTGTTTAACCGAAACAAGGAAAACCCCGCCGATGCGTCACCGCAATCTCCGGCGCCGGCGAGGCCATCTTCTTCATCTTCTCAGTTCACCGGACCACCGAGAGCTATTCGCCTTGTCTACTGCGATGAAAAGGGAAAGTTCCGTATGGATCCAGAAGCCGTCGCTATTCTTCAACTCGTCAAGGAACCCATCGGTGTCGTTTCTGTTTGTGGTCGTGCTCGCCAGGGAAAAAGCTATATCTTGAACCAGCTCTTAGGAAGCAGTGGTGGATTTAAAGTAGCATCTACACATCGACCCTGTACCAAAGGGCTTTGGATGTGGAGCGCACCTTTGAAGAGGACCGCACTTGATGGAACGGAGTACAATCTTCTACTATTAGACAGTGAAGGAATAGATGCTTATGATCAAACGGGAACATACAGCACCCAGATATTCTCACTGGCTGTTCTTTTATCTAGCATGTTCATTTACAACCAGATGGGTGGTATAGATGAGGCTGCTCTTGACCGTCTTTCTCTAGTCACTCAAATGACAAAGCATATTCGTGTTAGAGCTTCTGGAGAAAAGACTTCCGCGTCTGAAATAGGACAGTTTTCCCCAATTTTTGTTTGGCTCTTACGGGACTTCTATTTGGACTTGAGTGAAGATAACAGAAAAATAACACCCCGAGACTATCTAGAACTTGCTTTGCGGTCTGTTCAAGGGAACAGAAACGATGTAGCTGCTAAAAATGAGATTCGAGAATCCATTCGTGCTCTATTCCCAGATAGGGAATGCTTCACCCTTGTACGGCCTTTAAACAATGAAAATGATCTACAGCGACTGGACCAGATATCATCGGACAAACTAAGACCTGAATTTCGAAGAGATATTCAAGCTTTGATAAAGTTTGTTTTTGAAAGAACAAGGCCAAAGCAAGTTGGAGCAACTATGATGACAGGTCCTGTATTGATTGGTATCACCGAATCTTATCTTGATGCACTCAACCATGGTGCCGTGCCTACTATTTCTTCCTCCTGGCAGAGTGTTGAAGAAGCAGAGTGCCGTAGGGCTTATGATTTGGCTTCTGAAGTTTATATGGCTTCTTTTGACCGTTCCAAGCCACCTGAGGAAGTCGCTTTGATGGAAGCTCACGAACAAGCAGTTCATAAGTCAATGGCTGCTTTTAATGCTAGTGCTGTAGGAGTTGGTGCAGCTAGGAAGAAATATGAAGGTCAGCTTCAGAAATTCATCAAAAAGGCTTTCGAGGATTACAAAAGGAATGCATTCATGGAGGCAGATATACAATGTTCAAATGCCATACATTCTATGGAAAAGAGGCTGAGGGCAGCTTGTAATGCTTCTGATGCTAGGGTTGATAATGTTGCAAAGGTTCTAGATGCTCTTTTAACTGAATATGAAAAGTCCATTCAAGGTCCTGGAAAATGGAAAAAACTTGCTGTCTTCTTGCAGCAAAGTTTTGAAGGCCCTGTGCTTGACCTTTTCAAGAGGGTAATAGATAAAGTTGAATCAGAAAAAAGTTCTCTTGCCTTACAACGTCGGTTGAATGAAGATAAGATGACCTTACTGACCAAGCGGCTGGAAGCCAGTGAAGGTGAAAAGTCCGAGTACATCAAGCGATATGAGGATGCCATCAACGATAAGAAGAAATTAACTGATGAATACATGAACCGCATTACTGAATTGCAAGCTAATCGTCGCTCACTGGACGAGAGATATTCTAGCTTATTGAAAACATTGGACTCTAGTAAGCAGGAATCCATGGATTGGAAAAGAAAATATGAACAGGTTTTATCAAGGCAGAAAGCTGAGGAAGGTCAAACTAGTTCTGAAATAGCAGCCCTCAAATCCCGCAGTAGTGCAGCCGAAGCAAGGTTGGCAGCAGCAAGGGAACAAGCTCAGTCTGCTCAAGAGGAGGCTGATGAGTGGAAACGGAAGTATGATGTTGCTGTCAGAGAAGCAAAATCTGCTCTAGAGAAGGCAGCAATTGTTCAGGAGCGCACAAACAAGCAGACACAGTTGAGGGAAGATGTCTTAAGAGAAGAGTTCTCTGGAACTTTGGCTGAAAAAGATGAAGAAATAAAAGAAAAAACTGCGAAAATTGAGCATGCTGAGATGTGTTTAGCAACTCTGAAATTAGAGTTGAAGGCTGCTGAGTCCAAGATAAGGAGTTATGATACAGAAATATCGTCACTGAGGAATGAAATTAAAGATTTGACTGACAAAATGAAATCTGAAAATGCCAAGGCCCAGTCATATGAGAGGGAAGCAATAGTATATCAGCAGGAAAAGAACCATCTTGAGCAGAAGTACCAATCTGAGTTCAAAAGATTTGAGGAGGTTCAAGAAAGGTGTAAAACTGCTGAAAAAGAAGCTGCAAGGGCTACTGAAGTGGCTGATAGAGCACGGGCTGAAGCAGGCATGGCTCAGAAGGAGAAGAGTGAGATGCAGAGACTGGCAATGGAAAGACTGGCACAGATTGAGAGGGCTGAGAGGAGAATTGAAACTCTAGGAAGGGAGAAAGATAATCTGGAAGGTGAATTGCAGAGAGCAACGGATTCAGAGAAGGATGCACGTTTGACAGTTGCGAAGCTCGAAGAGAAGGTGCAACAAAGAGAGAAGGATTTAGAAGCACTTCTGGATAAAGATAAAACACACAGGAGAAATAATGCTCAGATTCTTGAACAACTTTTGGAAACAGAGCGTGAGGCACATACACAGGCAAATAACCGGGCTGAGAGTCTCTCTCTGCAGCTACAGTCTGCACAGGCCAAAATTGACTCCCTACATCAAGAGCTGACTAAGTTTCGAATGAATGAAACATTGGACAGTAAGCTAAAGACAACCGATGGTAAGCGATTGAGGGCAGAGAATGACAATGGTGCTGATTCTGTACAAGACATGGATGCAAGCCCTAGATTTTTAAGGGGAGCTAAAAGAGCCAGGAGTACAACCAGTCCTAAGTACACACAGCCAGAAGATGGTGGTTCAATCTATGAGGGTGCAGAGGACAATCTTAGTCAGCAAGCCAATGAAGAGGATCATACAAAGTTCACCATCCCGAAGCTTAAGCGAGAACTGACAAAACATAACTTTGGTGATCGGTTGCTTCAGTTGAAGAATCCCATGAAGAAAGATCTTGTTGCTCTGTATGAGGAATGTATTCTTCAGAGGTGA
Protein sequence

>Msa0945240

MFNLFNRNKENPADASPQSPAPARPSSSSSQFTGPPRAIRLVYCDEKGKFRMDPEAVAILQLVKEPIGVVSVCGRARQGKSYILNQLLGSSGGFKVASTHRPCTKGLWMWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGEKTSASEIGQFSPIFVWLLRDFYLDLSEDNRKITPRDYLELALRSVQGNRNDVAAKNEIRESIRALFPDRECFTLVRPLNNENDLQRLDQISSDKLRPEFRRDIQALIKFVFERTRPKQVGATMMTGPVLIGITESYLDALNHGAVPTISSSWQSVEEAECRRAYDLASEVYMASFDRSKPPEEVALMEAHEQAVHKSMAAFNASAVGVGAARKKYEGQLQKFIKKAFEDYKRNAFMEADIQCSNAIHSMEKRLRAACNASDARVDNVAKVLDALLTEYEKSIQGPGKWKKLAVFLQQSFEGPVLDLFKRVIDKVESEKSSLALQRRLNEDKMTLLTKRLEASEGEKSEYIKRYEDAINDKKKLTDEYMNRITELQANRRSLDERYSSLLKTLDSSKQESMDWKRKYEQVLSRQKAEEGQTSSEIAALKSRSSAAEARLAAAREQAQSAQEEADEWKRKYDVAVREAKSALEKAAIVQERTNKQTQLREDVLREEFSGTLAEKDEEIKEKTAKIEHAEMCLATLKLELKAAESKIRSYDTEISSLRNEIKDLTDKMKSENAKAQSYEREAIVYQQEKNHLEQKYQSEFKRFEEVQERCKTAEKEAARATEVADRARAEAGMAQKEKSEMQRLAMERLAQIERAERRIETLGREKDNLEGELQRATDSEKDARLTVAKLEEKVQQREKDLEALLDKDKTHRRNNAQILEQLLETEREAHTQANNRAESLSLQLQSAQAKIDSLHQELTKFRMNETLDSKLKTTDGKRLRAENDNGADSVQDMDASPRFLRGAKRARSTTSPKYTQPEDGGSIYEGAEDNLSQQANEEDHTKFTIPKLKRELTKHNFGDRLLQLKNPMKKDLVALYEECILQR*