AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041210 MtrunA17_Chr7g0269391 89.903 931 53 4 1 931 1 890 0.0 1534
Msa1041210 MtrunA17_Chr3g0142371 77.344 512 89 9 1 491 1 506 0.0 683
Msa1041210 MtrunA17_Chr3g0142361 80.720 389 35 3 518 906 1 349 0.0 607
Msa1041210 MtrunA17_Chr7g0257671 51.282 585 210 20 1 578 1 517 2.66e-135 421
Msa1041210 MtrunA17_Chr7g0257671 68.889 180 51 2 691 870 493 667 4.20e-73 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041210 AT4G02400.1 45.963 929 406 19 19 929 5 855 0.0 679
Msa1041210 AT5G08600.1 43.743 887 395 19 19 890 8 805 0.0 598
Msa1041210 AT5G08600.2 42.904 916 406 20 23 910 12 838 0.0 592
Msa1041210 AT5G08600.3 38.248 685 322 19 19 691 6 601 1.70e-107 346

Find 209 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCCTATTTCTCTGAATA+AGG 0.222756 7_1:+78802062 None:intergenic
ATGAAAGTTCCCAGAGAAAA+AGG 0.230480 7_1:-78799028 Msa1041210:CDS
CCATGTATCTGAGGCAAATA+TGG 0.232475 7_1:+78799620 None:intergenic
TATTCTTCCTGGATTCTTCT+TGG 0.234324 7_1:+78802803 None:intergenic
CCTCTGGCGTTCTTGTTTCA+TGG 0.236132 7_1:+78800889 None:intergenic
ACAGCTAAAGCATAACAAAT+TGG 0.249672 7_1:+78797003 None:intergenic
TCCAAAGAATACACTGAAAA+TGG 0.251438 7_1:+78797192 None:intergenic
AGAAGTCTTCAAAGTTTAAT+AGG 0.252682 7_1:-78799445 Msa1041210:CDS
ATTCCTCTCAAATTTAGTTC+TGG 0.253669 7_1:+78801964 None:intergenic
ACCAGTGGCAGAAGAGTATT+TGG 0.256001 7_1:-78799999 Msa1041210:CDS
ACATTAATGTTTCATTGTTT+TGG 0.263935 7_1:-78796880 Msa1041210:three_prime_UTR
TATTATCAGCACCAATTGTT+TGG 0.264258 7_1:+78799964 None:intergenic
AACAATTGGTGCTGATAATA+AGG 0.264486 7_1:-78799961 Msa1041210:CDS
ATTGACTCTGATGATGATTC+TGG 0.264836 7_1:-78802584 Msa1041210:CDS
GTCGTAACGCTTATTCTTCC+TGG 0.267608 7_1:+78802792 None:intergenic
GAATAAATAATTACCATAAA+AGG 0.270343 7_1:+78800462 None:intergenic
AACCCCTTATTCAGAGAAAT+AGG 0.271086 7_1:-78802066 Msa1041210:CDS
ATTCTTCCTGGATTCTTCTT+GGG 0.276605 7_1:+78802804 None:intergenic
CCACTGGTAGATGCTACTTT+TGG 0.288858 7_1:+78800014 None:intergenic
GCCTTTGCTATCATTGCCTT+TGG 0.300511 7_1:+78797312 None:intergenic
CAATTTGTTGATTTCTTAAC+CGG 0.305399 7_1:+78802194 None:intergenic
GCCTCTATTACTTCCTGGTT+GGG 0.307969 7_1:-78799108 Msa1041210:CDS
TACTTCCTGGTTGGGGTCAA+TGG 0.313460 7_1:-78799100 Msa1041210:CDS
TCTGAGAAGTCCAAGAAAAT+AGG 0.319842 7_1:+78799760 None:intergenic
TTTGATGAAAAGACAGATCT+AGG 0.330885 7_1:-78802025 Msa1041210:CDS
TGCCTCAGATACATGGAAAA+AGG 0.332114 7_1:-78799613 Msa1041210:intron
ACCTTTACATCGTGCCTAAC+AGG 0.337743 7_1:+78799422 None:intergenic
TTCCTCTCAAATTTAGTTCT+GGG 0.338005 7_1:+78801965 None:intergenic
GCATATTCATTAGCAGCTTC+AGG 0.339373 7_1:+78800911 None:intergenic
AGTTCATCATGACAAAATTA+TGG 0.340220 7_1:-78801930 Msa1041210:CDS
TCCCTCGTTCTATTATCTCT+TGG 0.340319 7_1:+78797104 None:intergenic
CTCCCTATTTCTCTGAATAA+GGG 0.343945 7_1:+78802063 None:intergenic
TAACAGACGATGATATGTTT+TGG 0.345941 7_1:+78800979 None:intergenic
AACTAGAATCATCAGGTCTT+TGG 0.348602 7_1:-78803111 Msa1041210:five_prime_UTR
GAGAAGCCTCTATTACTTCC+TGG 0.348985 7_1:-78799113 Msa1041210:CDS
AAGACATCTTTGGAAGTATA+AGG 0.349436 7_1:+78797792 None:intergenic
CAAAGTTTAATAGGCCTGTT+AGG 0.350326 7_1:-78799436 Msa1041210:CDS
TTGTTATGCTTTAGCTGTTA+AGG 0.351362 7_1:-78796998 Msa1041210:three_prime_UTR
ACGAGGAACTGACTAGAAAA+AGG 0.357806 7_1:-78800659 Msa1041210:CDS
TCTAACCCGGCAACTACATT+TGG 0.361095 7_1:-78797735 Msa1041210:CDS
AAAATCTTGTTTGCCTTATC+CGG 0.361359 7_1:+78800561 None:intergenic
TCGATTTCATCAACATCAAC+AGG 0.369537 7_1:+78802859 None:intergenic
GTAGTTGCCGGGTTAGATTC+AGG 0.370277 7_1:+78797741 None:intergenic
ATTATCAGCACCAATTGTTT+GGG 0.370353 7_1:+78799965 None:intergenic
GATCGTCACGAAGAGGATTA+AGG 0.372975 7_1:+78802233 None:intergenic
ATGGTGAATATTTATAGAAC+TGG 0.385024 7_1:+78797211 None:intergenic
AGAATCCTCCAGCTTCTTCA+TGG 0.403400 7_1:+78800052 None:intergenic
ACCTTCGCTTGATCTGCCTT+TGG 0.407519 7_1:+78802139 None:intergenic
AGCATCCTTTCTCTTCTTGA+GGG 0.407735 7_1:+78798998 None:intergenic
CTTCATATTCTTGTACAGTA+AGG 0.410508 7_1:+78800078 None:intergenic
TATAAAACCGATAGAATTTG+AGG 0.410968 7_1:-78797401 Msa1041210:CDS
AACTAAATTTGAGAGGAATA+TGG 0.412942 7_1:-78801960 Msa1041210:CDS
CCATATTTGCCTCAGATACA+TGG 0.414348 7_1:-78799620 Msa1041210:CDS
GACAATCAACGGAAGAAAAC+CGG 0.418141 7_1:-78802934 Msa1041210:CDS
GAGGAAGAATGATGTTATTC+CGG 0.419305 7_1:-78802332 Msa1041210:CDS
TGCTTGATAGGTTTCTATAA+AGG 0.420322 7_1:-78801092 Msa1041210:intron
ACACTCTGTTGCCGCTGCTC+TGG 0.420778 7_1:+78797358 None:intergenic
AGAGGTCCAAATGTAGTTGC+CGG 0.421778 7_1:+78797729 None:intergenic
CATCTCAAGAGGAGCTCATT+CGG 0.423337 7_1:-78799217 Msa1041210:CDS
GAGCATCCTTTCTCTTCTTG+AGG 0.426017 7_1:+78798997 None:intergenic
AAGCTTCCGCCTACCAAAAT+CGG 0.432729 7_1:+78797134 None:intergenic
TTCTTCCTGGATTCTTCTTG+GGG 0.434228 7_1:+78802805 None:intergenic
TGACCTTTCTTCTGATTTCG+AGG 0.434404 7_1:-78802746 Msa1041210:intron
TTATTATCATTGACAGAGAC+AGG 0.436439 7_1:+78802769 None:intergenic
TATTTATTCTTACCATCAAA+AGG 0.437025 7_1:+78802500 None:intergenic
CAGCTAAAGCATAACAAATT+GGG 0.439891 7_1:+78797004 None:intergenic
GTTAAAGAAAGTTAGATTGA+AGG 0.445755 7_1:-78800960 Msa1041210:CDS
CTACATTTGGACCTCTTACT+CGG 0.449943 7_1:-78797722 Msa1041210:CDS
AGGATGTTACAACGAATTAC+CGG 0.452496 7_1:-78802536 Msa1041210:CDS
GCTTGATCTGCCTTTGGAAG+TGG 0.453063 7_1:+78802145 None:intergenic
GTTGAAGCAGAGAATGTGTT+GGG 0.453366 7_1:+78803047 None:intergenic
AGCCTCTATTACTTCCTGGT+TGG 0.459722 7_1:-78799109 Msa1041210:CDS
ACTCTGATGAAAGACATCTT+TGG 0.462745 7_1:+78797782 None:intergenic
TTTATGCATTTCTTGAAACT+TGG 0.463818 7_1:-78799701 Msa1041210:CDS
ATGGCTAAAGCCCAAACAAT+TGG 0.467988 7_1:-78799975 Msa1041210:CDS
TGCTGATTCTGATCCGGATA+AGG 0.468993 7_1:-78800574 Msa1041210:CDS
ATCACTGCTGCTACTGTCCA+TGG 0.477773 7_1:+78800632 None:intergenic
TTGACTCTGATGATGATTCT+GGG 0.479242 7_1:-78802583 Msa1041210:CDS
GGAAGTAATAGAGGCTTCTC+AGG 0.479287 7_1:+78799116 None:intergenic
AGAGTCTTCTCAGTTGGAAA+TGG 0.480279 7_1:-78800936 Msa1041210:CDS
TGAAGATTCCATGAAGAAGC+TGG 0.480768 7_1:-78800060 Msa1041210:CDS
CGCTGCTCTGGTTTATCGTG+AGG 0.482465 7_1:+78797370 None:intergenic
TAAAGATAGCAATCCCGACT+TGG 0.484286 7_1:+78800485 None:intergenic
CCCCAACCAGGAAGTAATAG+AGG 0.486131 7_1:+78799107 None:intergenic
ACAAAAGACACTAGAAGTGC+TGG 0.486241 7_1:-78800526 Msa1041210:CDS
ACCCCTTATTCAGAGAAATA+GGG 0.486296 7_1:-78802065 Msa1041210:CDS
AAAAGAAAGGTTTACCATCC+TGG 0.489615 7_1:-78799064 Msa1041210:CDS
TTCACTTCCTCAAATTCTAT+CGG 0.489667 7_1:+78797394 None:intergenic
GATGATGAAATGCCCAAGTC+GGG 0.491051 7_1:-78800498 Msa1041210:CDS
CTTACTTCAGGCCGAGTAAG+AGG 0.491319 7_1:+78797711 None:intergenic
CAGAGTATGCGTATGCCCAT+TGG 0.493073 7_1:-78797765 Msa1041210:CDS
AACCGGAGTCTTGAATGATC+AGG 0.493279 7_1:+78802211 None:intergenic
TGAGATGGAAGTTCATAAGA+TGG 0.495179 7_1:+78799233 None:intergenic
GCCTGTTAGGCACGATGTAA+AGG 0.499377 7_1:-78799423 Msa1041210:intron
GGCTCCGCAATTTAGCAGCC+TGG 0.501451 7_1:+78801050 None:intergenic
CGGGTTAGATTCAGGTCCAA+TGG 0.503979 7_1:+78797749 None:intergenic
GCAACGTGGTTTAGATAAGC+AGG 0.506637 7_1:-78800724 Msa1041210:CDS
AATAGAGGCTTCTCAGGCTC+GGG 0.507163 7_1:+78799122 None:intergenic
TTCATGTTCTTTGACCATCC+AGG 0.508099 7_1:+78799046 None:intergenic
TTACCATCAAAAGGCTTGCT+CGG 0.509507 7_1:+78802509 None:intergenic
CCTCTATTACTTCCTGGTTG+GGG 0.511255 7_1:-78799107 Msa1041210:CDS
AACAACCCCAAGAAGAATCC+AGG 0.511562 7_1:-78802810 Msa1041210:CDS
AAGTGGCAACATTGAGAATG+AGG 0.513026 7_1:-78799880 Msa1041210:CDS
TAATAGAGGCTTCTCAGGCT+CGG 0.513747 7_1:+78799121 None:intergenic
TCCAAATACTCTTCTGCCAC+TGG 0.516839 7_1:+78799998 None:intergenic
AAAAGGCTTGCTCGGCATAC+CGG 0.517139 7_1:+78802517 None:intergenic
TGATAGCGAGGATGACTTTG+AGG 0.518712 7_1:-78799910 Msa1041210:CDS
TCATCAACATCAACAGGGGT+AGG 0.518821 7_1:+78802865 None:intergenic
TGTGATACTTTGAATACTCA+AGG 0.518840 7_1:+78797071 None:intergenic
GAAGGCAGAGTCTTCTCAGT+TGG 0.520406 7_1:-78800942 Msa1041210:CDS
CTAAACCTAGCGGCGTTGCT+AGG 0.522023 7_1:-78803082 Msa1041210:five_prime_UTR
AACAATGAAACATTAATGTA+CGG 0.524074 7_1:+78796884 None:intergenic
TTGATGAAAAGACAGATCTA+GGG 0.527190 7_1:-78802024 Msa1041210:CDS
TCACTAGAACTAGAATCATC+AGG 0.527679 7_1:-78803118 Msa1041210:five_prime_UTR
AGATGAAGGCAAACGAGGAC+CGG 0.528426 7_1:+78802915 None:intergenic
AAGTCGAAGTTGAAGGTCAA+GGG 0.530154 7_1:-78797268 Msa1041210:CDS
TGTGGTATAGAGGCGTGGAT+TGG 0.534234 7_1:-78800135 Msa1041210:intron
CAGATCAAGCGAAGGTGGAA+AGG 0.534540 7_1:-78802132 Msa1041210:CDS
CATCAACATCAACAGGGGTA+GGG 0.534608 7_1:+78802866 None:intergenic
ATACCTCGAAATCAGAAGAA+AGG 0.536953 7_1:+78802743 None:intergenic
TAATCCTAGTCACGATGTTG+TGG 0.538812 7_1:-78802287 Msa1041210:CDS
GAATGCTGCTGATTCTGATC+CGG 0.540001 7_1:-78800580 Msa1041210:CDS
ACATATATACCTCAGCCCTC+TGG 0.540183 7_1:+78800873 None:intergenic
ACTGATATACAGCAAAAGAA+AGG 0.541411 7_1:-78799077 Msa1041210:CDS
GACTTTGAGGCCAAGAAAAG+TGG 0.542359 7_1:-78799897 Msa1041210:CDS
TTCTTTGGAAAGATGCACTT+CGG 0.546093 7_1:-78797178 Msa1041210:three_prime_UTR
TTATGCTTTAGCTGTTAAGG+TGG 0.546687 7_1:-78796995 Msa1041210:three_prime_UTR
TCTTTGGAAGTATAAGGAAA+AGG 0.548729 7_1:+78797798 None:intergenic
TCTATAAAGGATGAGAAGGA+TGG 0.549986 7_1:-78801079 Msa1041210:CDS
GGGTTAGATTCAGGTCCAAT+GGG 0.550457 7_1:+78797750 None:intergenic
AGAAGCCCTCAAGAAGAGAA+AGG 0.556911 7_1:-78799003 Msa1041210:CDS
ATCAGCAGCATTCTCATCAT+CGG 0.557010 7_1:+78800590 None:intergenic
GAGGTCCAAATGTAGTTGCC+GGG 0.559756 7_1:+78797730 None:intergenic
TCCCTATTTCTCTGAATAAG+GGG 0.561919 7_1:+78802064 None:intergenic
AAAGTCGAAGTTGAAGGTCA+AGG 0.563646 7_1:-78797269 Msa1041210:CDS
GAGAAGAAGCGAAATGAAAG+AGG 0.563959 7_1:-78803006 Msa1041210:CDS
CTCTGAGAAATCAAGCAAGA+AGG 0.565144 7_1:-78798955 Msa1041210:intron
TCAGACTCTAGATATAGCTC+CGG 0.566700 7_1:+78802313 None:intergenic
AACCCAGAACTAAATTTGAG+AGG 0.568491 7_1:-78801967 Msa1041210:CDS
TGAGAAGGATGGGCATAACC+AGG 0.568538 7_1:-78801068 Msa1041210:CDS
ACAAGAACGCCAGAGGGCTG+AGG 0.569776 7_1:-78800882 Msa1041210:intron
GATGAAGGACAGATGGTGGA+TGG 0.571626 7_1:-78799278 Msa1041210:CDS
AGAAGACTTCCGACAATCAA+CGG 0.578262 7_1:-78802945 Msa1041210:CDS
TCATATCGTAGGCAATAAGA+AGG 0.579455 7_1:-78802356 Msa1041210:intron
CACGATGTTGTGGAAGGTGA+TGG 0.580194 7_1:-78802277 Msa1041210:CDS
GGTTTAGATAAGCAGGATGA+AGG 0.580805 7_1:-78800717 Msa1041210:CDS
CTATAAAGGATGAGAAGGAT+GGG 0.581490 7_1:-78801078 Msa1041210:CDS
AAAGGCAGATCAAGCGAAGG+TGG 0.582891 7_1:-78802137 Msa1041210:CDS
GGTTTCTATAAAGGATGAGA+AGG 0.584067 7_1:-78801083 Msa1041210:CDS
TTATGAACTTCCATCTCAAG+AGG 0.584960 7_1:-78799228 Msa1041210:CDS
AAAGATAGCAATCCCGACTT+GGG 0.584979 7_1:+78800486 None:intergenic
TCAAGCGAAGGTGGAAAGGA+AGG 0.585407 7_1:-78802128 Msa1041210:CDS
CGAATGAGCTCCTCTTGAGA+TGG 0.586031 7_1:+78799218 None:intergenic
CAAAGAAACAAGTCACAAAG+TGG 0.588340 7_1:-78802090 Msa1041210:CDS
CCTTCCACAACATCGTGACT+AGG 0.590447 7_1:+78802283 None:intergenic
TACAGATGATGAAGGACAGA+TGG 0.590901 7_1:-78799285 Msa1041210:CDS
CGTTGAAGCAGAGAATGTGT+TGG 0.591483 7_1:+78803046 None:intergenic
GATAGCGATACAGATGATGA+AGG 0.593448 7_1:-78799293 Msa1041210:CDS
CATTGGACCTGAATCTAACC+CGG 0.599340 7_1:-78797748 Msa1041210:CDS
AAGAAGTTGAATAGAACCAA+AGG 0.600324 7_1:-78797328 Msa1041210:CDS
GAAAGGTTTACCATCCTGGA+TGG 0.600524 7_1:-78799060 Msa1041210:CDS
TTCAAAGATGAAGGCAAACG+AGG 0.601593 7_1:+78802910 None:intergenic
TGTTCATGCACCACTTCCAA+AGG 0.604646 7_1:-78802155 Msa1041210:CDS
ATCCTGATCATTCAAGACTC+CGG 0.607138 7_1:-78802213 Msa1041210:CDS
AGATGATGAAATGCCCAAGT+CGG 0.607430 7_1:-78800499 Msa1041210:CDS
CCTAGTCACGATGTTGTGGA+AGG 0.607641 7_1:-78802283 Msa1041210:CDS
ATAACCAGGCTGCTAAATTG+CGG 0.608153 7_1:-78801054 Msa1041210:CDS
ACCAAAGGCAATGATAGCAA+AGG 0.609468 7_1:-78797313 Msa1041210:CDS
GTGATACTTTGAATACTCAA+GGG 0.614366 7_1:+78797072 None:intergenic
AAGATGATGAGAGACATGAA+AGG 0.617021 7_1:-78802556 Msa1041210:CDS
AAGAAGCTGGAGGATTCTGA+TGG 0.618164 7_1:-78800047 Msa1041210:CDS
TCTTTGAAAATGTTCAGTCA+CGG 0.619063 7_1:+78800683 None:intergenic
GTGCAGGTGGTGAAGAAACC+AGG 0.621465 7_1:-78797430 Msa1041210:intron
CGATTTCATCAACATCAACA+GGG 0.622807 7_1:+78802860 None:intergenic
TGTTCTTTGACCATCCAGGA+TGG 0.625183 7_1:+78799050 None:intergenic
TCCAAGAGATAATAGAACGA+GGG 0.626603 7_1:-78797105 Msa1041210:three_prime_UTR
CTCTGATGATGATTCTGGGG+AGG 0.628586 7_1:-78802579 Msa1041210:CDS
GGGAAGTGATCATCTGCAGA+AGG 0.630064 7_1:-78799859 Msa1041210:CDS
GACACAAACACAAAAGTCCA+TGG 0.630633 7_1:-78800761 Msa1041210:CDS
TCAGTCCATTGACCCCAACC+AGG 0.630731 7_1:+78799095 None:intergenic
CAATCTGATGATGACGACGA+CGG 0.632821 7_1:-78802638 Msa1041210:CDS
TGACTCTGATGATGATTCTG+GGG 0.636517 7_1:-78802582 Msa1041210:CDS
AGATGATGAAGGACAGATGG+TGG 0.637774 7_1:-78799282 Msa1041210:CDS
CATGAAACAAGAACGCCAGA+GGG 0.639643 7_1:-78800888 Msa1041210:CDS
AATTGGTGCTGATAATAAGG+TGG 0.640246 7_1:-78799958 Msa1041210:CDS
TGGCAGAAGAGTATTTGGAA+TGG 0.644354 7_1:-78799994 Msa1041210:CDS
TTACGATAACAGTGATAGCG+AGG 0.650293 7_1:-78799922 Msa1041210:CDS
TGATCAGGATCGTCACGAAG+AGG 0.652108 7_1:+78802226 None:intergenic
GTAGACCTAGCAACGCCGCT+AGG 0.654395 7_1:+78803077 None:intergenic
TCCAAAGGCAGATCAAGCGA+AGG 0.655899 7_1:-78802140 Msa1041210:CDS
CCATGAAACAAGAACGCCAG+AGG 0.656373 7_1:-78800889 Msa1041210:CDS
AGTGGCAACATTGAGAATGA+GGG 0.656546 7_1:-78799879 Msa1041210:CDS
AGCGAAGGTGGAAAGGAAGG+TGG 0.656706 7_1:-78802125 Msa1041210:CDS
TCGTAGGCAATAAGAAGGCG+AGG 0.658257 7_1:-78802351 Msa1041210:intron
TTTGTTGTGGTATAGAGGCG+TGG 0.661646 7_1:-78800140 Msa1041210:intron
TGATGGACGAATTACTATCG+AGG 0.680624 7_1:-78802260 Msa1041210:CDS
TATTATCATTGACAGAGACA+GGG 0.681643 7_1:+78802770 None:intergenic
AAAGACACTAGAAGTGCTGG+AGG 0.683825 7_1:-78800523 Msa1041210:CDS
TAGTCTTCTTGACATGAACA+AGG 0.684381 7_1:-78801885 Msa1041210:intron
AGATTCCATGAAGAAGCTGG+AGG 0.687128 7_1:-78800057 Msa1041210:CDS
CCTTATTCAGAGAAATAGGG+AGG 0.695528 7_1:-78802062 Msa1041210:CDS
TTGAAGCAGAGAATGTGTTG+GGG 0.695574 7_1:+78803048 None:intergenic
CTCACGATAAACCAGAGCAG+CGG 0.696038 7_1:-78797369 Msa1041210:CDS
ATCCAAGAGATAATAGAACG+AGG 0.703965 7_1:-78797106 Msa1041210:three_prime_UTR
CGTCACGAAGAGGATTAAGG+AGG 0.705412 7_1:+78802236 None:intergenic
TTGGCAATCTCTAAACCTAG+CGG 0.710692 7_1:-78803092 Msa1041210:five_prime_UTR
CTTCAGCGTAAAATGCAACG+TGG 0.719561 7_1:-78800738 Msa1041210:CDS
CCAAAAGTAGCATCTACCAG+TGG 0.721080 7_1:-78800014 Msa1041210:CDS
GATTTCATCAACATCAACAG+GGG 0.751147 7_1:+78802861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTGTAAAAAGTT+TGG + chr7_1:78801338-78801357 None:intergenic 10.0%
!!! TTTAATTTTTATCATATCGT+AGG - chr7_1:78797634-78797653 Msa1041210:intron 15.0%
!! TAAATTTCAAAATTCAAACA+TGG - chr7_1:78798341-78798360 Msa1041210:intron 15.0%
!!! AGCATAAAATCATAAATTTT+TGG - chr7_1:78798690-78798709 Msa1041210:intron 15.0%
!!! GCATAAAATCATAAATTTTT+GGG - chr7_1:78798691-78798710 Msa1041210:intron 15.0%
!! GAATAAATAATTACCATAAA+AGG + chr7_1:78799542-78799561 None:intergenic 15.0%
!!! AATATATACTTTTGAAATGT+TGG + chr7_1:78801392-78801411 None:intergenic 15.0%
!! TATATAATTTAGTGTATGTT+CGG - chr7_1:78801694-78801713 Msa1041210:intron 15.0%
!! TTGATTTATACATAAATGTA+TGG - chr7_1:78801918-78801937 Msa1041210:CDS 15.0%
!! CTCTTAACTAATTTAAATAA+AGG + chr7_1:78802385-78802404 None:intergenic 15.0%
!!! ATGATTTTATTGGAAAAAAG+AGG - chr7_1:78797388-78797407 Msa1041210:CDS 20.0%
!! TATTTATTCTTACCATCAAA+AGG + chr7_1:78797504-78797523 None:intergenic 20.0%
!! TTTATGTAATTTATGTTAGC+TGG - chr7_1:78798150-78798169 Msa1041210:intron 20.0%
!! AATGAAAATTCAAGACATTT+GGG + chr7_1:78798278-78798297 None:intergenic 20.0%
!! AAATGAAAATTCAAGACATT+TGG + chr7_1:78798279-78798298 None:intergenic 20.0%
!!! GTTATTTTCCAATCATAAAA+GGG + chr7_1:78798439-78798458 None:intergenic 20.0%
!!! CTACAATTCAATAATTTGTA+AGG + chr7_1:78798538-78798557 None:intergenic 20.0%
!! CATATATGTTATTACATTGA+TGG + chr7_1:78798740-78798759 None:intergenic 20.0%
!!! TAATAGAATACGATTCTTTT+AGG - chr7_1:78798767-78798786 Msa1041210:intron 20.0%
!! TCATAAACAACAAAAAACAA+CGG + chr7_1:78798889-78798908 None:intergenic 20.0%
!! TAAAAGAAGATAAATGTTCT+TGG - chr7_1:78799169-78799188 Msa1041210:CDS 20.0%
!!! ATATATCTTTTGCAAATGTT+TGG - chr7_1:78799753-78799772 Msa1041210:CDS 20.0%
!!! GGTTTCTTAAATATTTTCTT+TGG - chr7_1:78799774-78799793 Msa1041210:CDS 20.0%
!!! AATTTTCTGCTTTTAGTTTA+TGG - chr7_1:78799827-78799846 Msa1041210:CDS 20.0%
!!! TGAATAATTTCCTATTTTCT+TGG - chr7_1:78800231-78800250 Msa1041210:intron 20.0%
!!! TTTGTTTTACTTAATGGTAA+TGG - chr7_1:78800266-78800285 Msa1041210:intron 20.0%
!!! TTGTTTTACTTAATGGTAAT+GGG - chr7_1:78800267-78800286 Msa1041210:intron 20.0%
!! TTTGATATCTTCCATATATA+TGG - chr7_1:78800464-78800483 Msa1041210:intron 20.0%
!! AACAATTCAGTTTATATTCT+TGG + chr7_1:78800623-78800642 None:intergenic 20.0%
!! AAGAATATAAACTGAATTGT+TGG - chr7_1:78800622-78800641 Msa1041210:CDS 20.0%
!! CAATGTTGATGTTTATAATT+CGG + chr7_1:78801114-78801133 None:intergenic 20.0%
!! ATAAAGAAGAAAAAAATCAG+TGG + chr7_1:78801298-78801317 None:intergenic 20.0%
!!! TTTTTTTCTTCTTTATTACC+AGG - chr7_1:78801302-78801321 Msa1041210:intron 20.0%
!!! TTTTTTCTTCTTTATTACCA+GGG - chr7_1:78801303-78801322 Msa1041210:intron 20.0%
!! TATATATTATGCTCTAATGT+TGG - chr7_1:78801404-78801423 Msa1041210:intron 20.0%
!!! ATAATTGATTTTGTCATGTT+AGG - chr7_1:78801756-78801775 Msa1041210:intron 20.0%
!! CAAAAGAATAAAATCAAAAC+CGG + chr7_1:78802146-78802165 None:intergenic 20.0%
!! TGATGATAAACACAAATAAA+AGG + chr7_1:78802349-78802368 None:intergenic 20.0%
!! AATTAGTTAAGAGTGATATT+TGG - chr7_1:78802392-78802411 Msa1041210:intron 20.0%
!! AACAATGAAACATTAATGTA+CGG + chr7_1:78803120-78803139 None:intergenic 20.0%
!!! ACATTAATGTTTCATTGTTT+TGG - chr7_1:78803121-78803140 Msa1041210:five_prime_UTR 20.0%
!!! ATCTCTTTTTTCAAAGATGA+AGG + chr7_1:78797103-78797122 None:intergenic 25.0%
!!! CAATTTGTTGATTTCTTAAC+CGG + chr7_1:78797810-78797829 None:intergenic 25.0%
!!! TTTTCATCAAAGTACTTAGT+AGG + chr7_1:78797967-78797986 None:intergenic 25.0%
! AACTAAATTTGAGAGGAATA+TGG - chr7_1:78798041-78798060 Msa1041210:intron 25.0%
! AGTTCATCATGACAAAATTA+TGG - chr7_1:78798071-78798090 Msa1041210:intron 25.0%
!! GGATTTGTTTGATAAATTAC+TGG - chr7_1:78798362-78798381 Msa1041210:intron 25.0%
!! TTTGATAAATTACTGGTTGT+TGG - chr7_1:78798369-78798388 Msa1041210:intron 25.0%
!!! GGTTATTTTCCAATCATAAA+AGG + chr7_1:78798440-78798459 None:intergenic 25.0%
! TTATGATTGGAAAATAACCT+TGG - chr7_1:78798441-78798460 Msa1041210:intron 25.0%
! AGAACAATAAAAATACTGAG+AGG + chr7_1:78798586-78798605 None:intergenic 25.0%
! ATATGTTATTACATTGATGG+CGG + chr7_1:78798737-78798756 None:intergenic 25.0%
! GTTAAAGAAAGTTAGATTGA+AGG - chr7_1:78799041-78799060 Msa1041210:CDS 25.0%
!! ATTGCTATCTTTACCTTTTA+TGG - chr7_1:78799526-78799545 Msa1041210:intron 25.0%
! GGGTAACTAATATTTATTTC+AGG + chr7_1:78799586-78799605 None:intergenic 25.0%
! ATACATATATATACCATCAG+AGG + chr7_1:78799611-78799630 None:intergenic 25.0%
!!! CAGATGTTTGTTTTACTTAA+TGG - chr7_1:78800260-78800279 Msa1041210:intron 25.0%
! TTTATGCATTTCTTGAAACT+TGG - chr7_1:78800300-78800319 Msa1041210:intron 25.0%
! AGAAGTCTTCAAAGTTTAAT+AGG - chr7_1:78800556-78800575 Msa1041210:CDS 25.0%
!!! TGTAGAAGATGATTTTGAAA+AGG - chr7_1:78800827-78800846 Msa1041210:intron 25.0%
! TGACTTTAAATACAAGGTTT+AGG - chr7_1:78801073-78801092 Msa1041210:CDS 25.0%
! AAGATACTGATATCTTAAAC+TGG + chr7_1:78801272-78801291 None:intergenic 25.0%
!!! ATCTTTTATTTTGGTCAACA+CGG + chr7_1:78801598-78801617 None:intergenic 25.0%
!!! GTATTGTCGATCTTTTATTT+TGG + chr7_1:78801607-78801626 None:intergenic 25.0%
! AAGGTAAAGTGATTTATGAT+AGG + chr7_1:78801969-78801988 None:intergenic 25.0%
! TCTGACTAAAAGTAAATTGA+AGG + chr7_1:78801988-78802007 None:intergenic 25.0%
!!! CGGTTTTGATTTTATTCTTT+TGG - chr7_1:78802144-78802163 Msa1041210:CDS 25.0%
!! TTTATTCTTTTGGATATGAC+AGG - chr7_1:78802154-78802173 Msa1041210:CDS 25.0%
!!! TGTTTTGAAAAACTTACTTC+AGG + chr7_1:78802305-78802324 None:intergenic 25.0%
! TTAAGAGCTTTACTACATAA+AGG + chr7_1:78802426-78802445 None:intergenic 25.0%
! TATGTAGTAAAGCTCTTAAT+TGG - chr7_1:78802427-78802446 Msa1041210:intron 25.0%
! CTCTTAATTGGATATACTTA+CGG - chr7_1:78802439-78802458 Msa1041210:intron 25.0%
! TCTTAATTGGATATACTTAC+GGG - chr7_1:78802440-78802459 Msa1041210:intron 25.0%
! GCTACAAAAGAAAAAAATAC+AGG + chr7_1:78802527-78802546 None:intergenic 25.0%
! AAATATATTCTTGTATGTGC+AGG - chr7_1:78802555-78802574 Msa1041210:CDS 25.0%
! TATAAAACCGATAGAATTTG+AGG - chr7_1:78802600-78802619 Msa1041210:CDS 25.0%
! ATGGTGAATATTTATAGAAC+TGG + chr7_1:78802793-78802812 None:intergenic 25.0%
!!! CTTCTTAGACTTCTTTTTTC+CGG + chr7_1:78797041-78797060 None:intergenic 30.0%
TATTATCATTGACAGAGACA+GGG + chr7_1:78797234-78797253 None:intergenic 30.0%
TTATTATCATTGACAGAGAC+AGG + chr7_1:78797235-78797254 None:intergenic 30.0%
CGAAATGAACAATGAAATTG+AGG + chr7_1:78797297-78797316 None:intergenic 30.0%
CTGAATCCATTTGTTTGTTT+AGG - chr7_1:78797329-78797348 Msa1041210:CDS 30.0%
TCTCATCCTAAACAAACAAA+TGG + chr7_1:78797338-78797357 None:intergenic 30.0%
TTTGATGAAAAGACAGATCT+AGG - chr7_1:78797976-78797995 Msa1041210:intron 30.0%
TTGATGAAAAGACAGATCTA+GGG - chr7_1:78797977-78797996 Msa1041210:intron 30.0%
!! TTCCTCTCAAATTTAGTTCT+GGG + chr7_1:78798039-78798058 None:intergenic 30.0%
! ATTCCTCTCAAATTTAGTTC+TGG + chr7_1:78798040-78798059 None:intergenic 30.0%
! TTTTACATTACCGATAGTAG+AGG - chr7_1:78798181-78798200 Msa1041210:intron 30.0%
ATTCTATGATCCTCTACTAT+CGG + chr7_1:78798194-78798213 None:intergenic 30.0%
TTATACATCAATCATGGACT+CGG + chr7_1:78798255-78798274 None:intergenic 30.0%
! TTTGGGTTATACATCAATCA+TGG + chr7_1:78798261-78798280 None:intergenic 30.0%
TACTTTGCGTTTAGCATTTA+TGG - chr7_1:78798311-78798330 Msa1041210:intron 30.0%
AATAAAAATACTGAGAGGAG+GGG + chr7_1:78798581-78798600 None:intergenic 30.0%
CAATAAAAATACTGAGAGGA+GGG + chr7_1:78798582-78798601 None:intergenic 30.0%
ACAATAAAAATACTGAGAGG+AGG + chr7_1:78798583-78798602 None:intergenic 30.0%
!!! GAATTTTTTTACTACTGCCA+TGG - chr7_1:78798647-78798666 Msa1041210:intron 30.0%
!!! CAGTTGGTGCTATTAATTTT+TGG + chr7_1:78798818-78798837 None:intergenic 30.0%
! TGTTGTTTATGATGCTTGAT+AGG - chr7_1:78798897-78798916 Msa1041210:intron 30.0%
TGCTTGATAGGTTTCTATAA+AGG - chr7_1:78798909-78798928 Msa1041210:intron 30.0%
! TAACAGACGATGATATGTTT+TGG + chr7_1:78799025-78799044 None:intergenic 30.0%
ATGCGTTCCTAAAATAAGTT+GGG + chr7_1:78799212-78799231 None:intergenic 30.0%
! TCTTTGAAAATGTTCAGTCA+CGG + chr7_1:78799321-78799340 None:intergenic 30.0%
! AAAATCTTGTTTGCCTTATC+CGG + chr7_1:78799443-78799462 None:intergenic 30.0%
TATATATACCATCAGAGGTT+GGG + chr7_1:78799606-78799625 None:intergenic 30.0%
ATATATATACCATCAGAGGT+TGG + chr7_1:78799607-78799626 None:intergenic 30.0%
ATATAAGCCATAGTCTTTGT+GGG + chr7_1:78799644-78799663 None:intergenic 30.0%
TATATAAGCCATAGTCTTTG+TGG + chr7_1:78799645-78799664 None:intergenic 30.0%
AATACATGTCCTATTGATAC+TGG - chr7_1:78799701-78799720 Msa1041210:CDS 30.0%
ATATATGCCTTCATCATAGT+TGG + chr7_1:78799739-78799758 None:intergenic 30.0%
AATTACCATCTGACAATTTC+AGG + chr7_1:78799811-78799830 None:intergenic 30.0%
CTTCATATTCTTGTACAGTA+AGG + chr7_1:78799926-78799945 None:intergenic 30.0%
ATTATCAGCACCAATTGTTT+GGG + chr7_1:78800039-78800058 None:intergenic 30.0%
TATTATCAGCACCAATTGTT+TGG + chr7_1:78800040-78800059 None:intergenic 30.0%
!! AACAATTGGTGCTGATAATA+AGG - chr7_1:78800040-78800059 Msa1041210:CDS 30.0%
!!! TCGCAAAGAATCTGTTTTTA+AGG - chr7_1:78800208-78800227 Msa1041210:intron 30.0%
GATGAGATTGTAAAAAATCC+CGG - chr7_1:78800335-78800354 Msa1041210:intron 30.0%
ATGAGATTGTAAAAAATCCC+GGG - chr7_1:78800336-78800355 Msa1041210:intron 30.0%
! GAAACTTCGTATGTAGTTTT+TGG + chr7_1:78800362-78800381 None:intergenic 30.0%
CCAACAAAATGCCATATATA+TGG + chr7_1:78800478-78800497 None:intergenic 30.0%
! CCATATATATGGCATTTTGT+TGG - chr7_1:78800475-78800494 Msa1041210:intron 30.0%
! TTGGACTGATTTACTGATAA+TGG - chr7_1:78800494-78800513 Msa1041210:CDS 30.0%
! TGGACTGATTTACTGATAAT+GGG - chr7_1:78800495-78800514 Msa1041210:CDS 30.0%
!! AGCTCTGAAAAAGATCAATT+GGG - chr7_1:78800681-78800700 Msa1041210:CDS 30.0%
!! TGATTTTGAAAAGGATAAGC+AGG - chr7_1:78800836-78800855 Msa1041210:intron 30.0%
ACTGATATACAGCAAAAGAA+AGG - chr7_1:78800924-78800943 Msa1041210:CDS 30.0%
GGTTAGTGACTTTAAATACA+AGG - chr7_1:78801067-78801086 Msa1041210:CDS 30.0%
! ATAATTCGGAAGCATATGAA+AGG + chr7_1:78801100-78801119 None:intergenic 30.0%
ATCAACATTGAAGACTATGT+CGG - chr7_1:78801124-78801143 Msa1041210:intron 30.0%
GTGAACATTACAAAGATTTG+TGG - chr7_1:78801183-78801202 Msa1041210:intron 30.0%
AGATGTTTACATCAACTCAA+AGG + chr7_1:78801454-78801473 None:intergenic 30.0%
! TGCGTCTCAAAATCTAATTT+TGG + chr7_1:78801516-78801535 None:intergenic 30.0%
! AGTCCAAACTGATTTCAAAT+AGG - chr7_1:78801539-78801558 Msa1041210:intron 30.0%
! AAGCCTATTTGAAATCAGTT+TGG + chr7_1:78801545-78801564 None:intergenic 30.0%
! GAAGTCAAAATTGATTCTAG+AGG - chr7_1:78801730-78801749 Msa1041210:intron 30.0%
!! TTTCAAGTTAGAATCAGCTA+TGG + chr7_1:78801810-78801829 None:intergenic 30.0%
ATAAACAGTACAGAAGACAA+TGG + chr7_1:78802098-78802117 None:intergenic 30.0%
! TCTTTGGAAGTATAAGGAAA+AGG + chr7_1:78802206-78802225 None:intergenic 30.0%
! AAGACATCTTTGGAAGTATA+AGG + chr7_1:78802212-78802231 None:intergenic 30.0%
!! AGTTTTTCAAAACAGTTCCT+TGG - chr7_1:78802311-78802330 Msa1041210:CDS 30.0%
AAAGGATAAAATGTTTGCCA+AGG + chr7_1:78802331-78802350 None:intergenic 30.0%
!! ATCGGTTTTATAATAACACC+TGG + chr7_1:78802592-78802611 None:intergenic 30.0%
TTCACTTCCTCAAATTCTAT+CGG + chr7_1:78802610-78802629 None:intergenic 30.0%
AAGAAGTTGAATAGAACCAA+AGG - chr7_1:78802673-78802692 Msa1041210:intron 30.0%
!!! CTTCAACTTCGACTTTTTTA+TGG + chr7_1:78802728-78802747 None:intergenic 30.0%
CATAAAAAAGTCGAAGTTGA+AGG - chr7_1:78802726-78802745 Msa1041210:intron 30.0%
! ACCATTTTCAGTGTATTCTT+TGG - chr7_1:78802808-78802827 Msa1041210:CDS 30.0%
TCCAAAGAATACACTGAAAA+TGG + chr7_1:78802812-78802831 None:intergenic 30.0%
!! AGAGAAAAATAGACCGATTT+TGG - chr7_1:78802854-78802873 Msa1041210:CDS 30.0%
!! AAAAATAGACCGATTTTGGT+AGG - chr7_1:78802858-78802877 Msa1041210:CDS 30.0%
GTGATACTTTGAATACTCAA+GGG + chr7_1:78802932-78802951 None:intergenic 30.0%
TGTGATACTTTGAATACTCA+AGG + chr7_1:78802933-78802952 None:intergenic 30.0%
CAGCTAAAGCATAACAAATT+GGG + chr7_1:78803000-78803019 None:intergenic 30.0%
ACAGCTAAAGCATAACAAAT+TGG + chr7_1:78803001-78803020 None:intergenic 30.0%
TTGTTATGCTTTAGCTGTTA+AGG - chr7_1:78803003-78803022 Msa1041210:CDS 30.0%
TCACTAGAACTAGAATCATC+AGG - chr7_1:78796883-78796902 Msa1041210:three_prime_UTR 35.0%
AACTAGAATCATCAGGTCTT+TGG - chr7_1:78796890-78796909 Msa1041210:three_prime_UTR 35.0%
CTTCAACGCTTCAACAAAAA+TGG - chr7_1:78796970-78796989 Msa1041210:three_prime_UTR 35.0%
GATTTCATCAACATCAACAG+GGG + chr7_1:78797143-78797162 None:intergenic 35.0%
CGATTTCATCAACATCAACA+GGG + chr7_1:78797144-78797163 None:intergenic 35.0%
TCGATTTCATCAACATCAAC+AGG + chr7_1:78797145-78797164 None:intergenic 35.0%
ATTCTTCCTGGATTCTTCTT+GGG + chr7_1:78797200-78797219 None:intergenic 35.0%
TATTCTTCCTGGATTCTTCT+TGG + chr7_1:78797201-78797220 None:intergenic 35.0%
ATACCTCGAAATCAGAAGAA+AGG + chr7_1:78797261-78797280 None:intergenic 35.0%
! GACGACGGATATGATTTTAT+TGG - chr7_1:78797378-78797397 Msa1041210:CDS 35.0%
! ATTGACTCTGATGATGATTC+TGG - chr7_1:78797417-78797436 Msa1041210:CDS 35.0%
! TTGACTCTGATGATGATTCT+GGG - chr7_1:78797418-78797437 Msa1041210:CDS 35.0%
AAGATGATGAGAGACATGAA+AGG - chr7_1:78797445-78797464 Msa1041210:intron 35.0%
AGGATGTTACAACGAATTAC+CGG - chr7_1:78797465-78797484 Msa1041210:intron 35.0%
TCATATCGTAGGCAATAAGA+AGG - chr7_1:78797645-78797664 Msa1041210:intron 35.0%
GAGGAAGAATGATGTTATTC+CGG - chr7_1:78797669-78797688 Msa1041210:intron 35.0%
CAAAGAAACAAGTCACAAAG+TGG - chr7_1:78797911-78797930 Msa1041210:intron 35.0%
AACCCCTTATTCAGAGAAAT+AGG - chr7_1:78797935-78797954 Msa1041210:intron 35.0%
ACCCCTTATTCAGAGAAATA+GGG - chr7_1:78797936-78797955 Msa1041210:intron 35.0%
! TCCCTATTTCTCTGAATAAG+GGG + chr7_1:78797940-78797959 None:intergenic 35.0%
! CTCCCTATTTCTCTGAATAA+GGG + chr7_1:78797941-78797960 None:intergenic 35.0%
!! GATCTAGGGTTTTCAACTAT+AGG - chr7_1:78797991-78798010 Msa1041210:intron 35.0%
AACCCAGAACTAAATTTGAG+AGG - chr7_1:78798034-78798053 Msa1041210:intron 35.0%
ATGGAAGCTCATAAAAACGA+TGG - chr7_1:78798090-78798109 Msa1041210:intron 35.0%
TAGTCTTCTTGACATGAACA+AGG - chr7_1:78798116-78798135 Msa1041210:intron 35.0%
! AAACCTGATTGTCTTTTTCC+AGG - chr7_1:78798217-78798236 Msa1041210:intron 35.0%
! GTTGTTCTCCCTTTTATGAT+TGG - chr7_1:78798428-78798447 Msa1041210:intron 35.0%
TGATTGGAAAATAACCTTGG+CGG - chr7_1:78798444-78798463 Msa1041210:intron 35.0%
TAACTGAGGAGGAATTAAGA+TGG - chr7_1:78798470-78798489 Msa1041210:intron 35.0%
ATAAAAATACTGAGAGGAGG+GGG + chr7_1:78798580-78798599 None:intergenic 35.0%
! TTTCTACATGGTTGGTTAAG+AGG + chr7_1:78798610-78798629 None:intergenic 35.0%
AACCAACCATGTAGAAAGAT+TGG - chr7_1:78798613-78798632 Msa1041210:intron 35.0%
ATCCAATCTTTCTACATGGT+TGG + chr7_1:78798618-78798637 None:intergenic 35.0%
TGCAATCCAATCTTTCTACA+TGG + chr7_1:78798622-78798641 None:intergenic 35.0%
ATATCCCACTTAAAACACCA+TGG + chr7_1:78798667-78798686 None:intergenic 35.0%
!! ATGGTGTTTTAAGTGGGATA+TGG - chr7_1:78798666-78798685 Msa1041210:intron 35.0%
TTGGCATGAGTAATTGAGTA+TGG + chr7_1:78798799-78798818 None:intergenic 35.0%
AGAAATTTGAACAGTGCAGT+TGG + chr7_1:78798834-78798853 None:intergenic 35.0%
GGTTTCTATAAAGGATGAGA+AGG - chr7_1:78798918-78798937 Msa1041210:intron 35.0%
TCTATAAAGGATGAGAAGGA+TGG - chr7_1:78798922-78798941 Msa1041210:intron 35.0%
CTATAAAGGATGAGAAGGAT+GGG - chr7_1:78798923-78798942 Msa1041210:intron 35.0%
TCATCTCATGACGAAAAAGA+AGG + chr7_1:78798975-78798994 None:intergenic 35.0%
!! TCTTTTTCGTCATGAGATGA+AGG - chr7_1:78798975-78798994 Msa1041210:CDS 35.0%
!! CTCACTTCCCAACTTATTTT+AGG - chr7_1:78799202-78799221 Msa1041210:CDS 35.0%
CATGCGTTCCTAAAATAAGT+TGG + chr7_1:78799213-78799232 None:intergenic 35.0%
! TGAACATTTTCAAAGACACG+AGG - chr7_1:78799325-78799344 Msa1041210:intron 35.0%
GACTAGAAAAAGGAAAACCA+TGG - chr7_1:78799352-78799371 Msa1041210:intron 35.0%
ATGTCCTATTGATACTGGAA+AGG - chr7_1:78799706-78799725 Msa1041210:CDS 35.0%
TGTCCTATTGATACTGGAAA+GGG - chr7_1:78799707-78799726 Msa1041210:CDS 35.0%
TAAAGCCTGAAATTGTCAGA+TGG - chr7_1:78799803-78799822 Msa1041210:CDS 35.0%
CTATACCACAACAAATCAGA+TGG + chr7_1:78799856-78799875 None:intergenic 35.0%
!! TCTGATTTGTTGTGGTATAG+AGG - chr7_1:78799856-78799875 Msa1041210:CDS 35.0%
!! AATTGGTGCTGATAATAAGG+TGG - chr7_1:78800043-78800062 Msa1041210:CDS 35.0%
TCTGAGAAGTCCAAGAAAAT+AGG + chr7_1:78800244-78800263 None:intergenic 35.0%
! TACCTTTTTCCATGTATCTG+AGG + chr7_1:78800393-78800412 None:intergenic 35.0%
! GGACTGATTTACTGATAATG+GGG - chr7_1:78800496-78800515 Msa1041210:CDS 35.0%
CAAAGTTTAATAGGCCTGTT+AGG - chr7_1:78800565-78800584 Msa1041210:CDS 35.0%
!! GAGCTCTGAAAAAGATCAAT+TGG - chr7_1:78800680-78800699 Msa1041210:CDS 35.0%
TGAAAAAGATCAATTGGGAG+AGG - chr7_1:78800686-78800705 Msa1041210:CDS 35.0%
TGAGATGGAAGTTCATAAGA+TGG + chr7_1:78800771-78800790 None:intergenic 35.0%
TTATGAACTTCCATCTCAAG+AGG - chr7_1:78800773-78800792 Msa1041210:CDS 35.0%
AAAAGAAAGGTTTACCATCC+TGG - chr7_1:78800937-78800956 Msa1041210:CDS 35.0%
ATGAAAGTTCCCAGAGAAAA+AGG - chr7_1:78800973-78800992 Msa1041210:CDS 35.0%
TGAAAGTTCCCAGAGAAAAA+GGG - chr7_1:78800974-78800993 Msa1041210:CDS 35.0%
TATTATGCTCTAATGTTGGC+AGG - chr7_1:78801408-78801427 Msa1041210:intron 35.0%
!! AATACTTCAGTGTTGGTCTA+CGG - chr7_1:78801622-78801641 Msa1041210:intron 35.0%
!!! AATTTTGACTTCTCCAGAAG+TGG + chr7_1:78801722-78801741 None:intergenic 35.0%
!! CGTTTTTGTTTGGAGTTTCT+CGG + chr7_1:78802180-78802199 None:intergenic 35.0%
CGAGAAACTCCAAACAAAAA+CGG - chr7_1:78802178-78802197 Msa1041210:CDS 35.0%
ACTCTGATGAAAGACATCTT+TGG + chr7_1:78802222-78802241 None:intergenic 35.0%
CTTTACTACATAAAGGAGGA+CGG + chr7_1:78802419-78802438 None:intergenic 35.0%
AGAGCTTTACTACATAAAGG+AGG + chr7_1:78802423-78802442 None:intergenic 35.0%
! TTGGATATACTTACGGGTTT+TGG - chr7_1:78802446-78802465 Msa1041210:intron 35.0%
!!! ATATACTTACGGGTTTTGGA+GGG - chr7_1:78802450-78802469 Msa1041210:intron 35.0%
TATATTCTTGTATGTGCAGG+TGG - chr7_1:78802558-78802577 Msa1041210:CDS 35.0%
GTCAAGGGAAAAAAGTAAGT+GGG - chr7_1:78802748-78802767 Msa1041210:CDS 35.0%
! TTCTTTGGAAAGATGCACTT+CGG - chr7_1:78802823-78802842 Msa1041210:CDS 35.0%
ATCCAAGAGATAATAGAACG+AGG - chr7_1:78802895-78802914 Msa1041210:CDS 35.0%
TCCAAGAGATAATAGAACGA+GGG - chr7_1:78802896-78802915 Msa1041210:CDS 35.0%
TTATGCTTTAGCTGTTAAGG+TGG - chr7_1:78803006-78803025 Msa1041210:CDS 35.0%
! CTGCGACAATTTTCTTATCT+TGG - chr7_1:78803047-78803066 Msa1041210:five_prime_UTR 35.0%
TTGGCAATCTCTAAACCTAG+CGG - chr7_1:78796909-78796928 Msa1041210:three_prime_UTR 40.0%
TTGAAGCAGAGAATGTGTTG+GGG + chr7_1:78796956-78796975 None:intergenic 40.0%
GTTGAAGCAGAGAATGTGTT+GGG + chr7_1:78796957-78796976 None:intergenic 40.0%
GAGAAGAAGCGAAATGAAAG+AGG - chr7_1:78796995-78797014 Msa1041210:three_prime_UTR 40.0%
!!! TAGACTTCTTTTTTCCGGTG+TGG + chr7_1:78797036-78797055 None:intergenic 40.0%
AGAAGACTTCCGACAATCAA+CGG - chr7_1:78797056-78797075 Msa1041210:three_prime_UTR 40.0%
!! GGTTTTCTTCCGTTGATTGT+CGG + chr7_1:78797068-78797087 None:intergenic 40.0%
GACAATCAACGGAAGAAAAC+CGG - chr7_1:78797067-78797086 Msa1041210:three_prime_UTR 40.0%
TTCAAAGATGAAGGCAAACG+AGG + chr7_1:78797094-78797113 None:intergenic 40.0%
TTCTTCCTGGATTCTTCTTG+GGG + chr7_1:78797199-78797218 None:intergenic 40.0%
TGACCTTTCTTCTGATTTCG+AGG - chr7_1:78797255-78797274 Msa1041210:exon 40.0%
! TGACTCTGATGATGATTCTG+GGG - chr7_1:78797419-78797438 Msa1041210:CDS 40.0%
! TTACCATCAAAAGGCTTGCT+CGG + chr7_1:78797495-78797514 None:intergenic 40.0%
TCAGACTCTAGATATAGCTC+CGG + chr7_1:78797691-78797710 None:intergenic 40.0%
TAATCCTAGTCACGATGTTG+TGG - chr7_1:78797714-78797733 Msa1041210:intron 40.0%
! TGATGGACGAATTACTATCG+AGG - chr7_1:78797741-78797760 Msa1041210:CDS 40.0%
ATCCTGATCATTCAAGACTC+CGG - chr7_1:78797788-78797807 Msa1041210:CDS 40.0%
! CCTCCCTATTTCTCTGAATA+AGG + chr7_1:78797942-78797961 None:intergenic 40.0%
CCTTATTCAGAGAAATAGGG+AGG - chr7_1:78797939-78797958 Msa1041210:intron 40.0%
GAAGCTCATAAAAACGATGG+TGG - chr7_1:78798093-78798112 Msa1041210:intron 40.0%
GAACCTGGAAAAAGACAATC+AGG + chr7_1:78798223-78798242 None:intergenic 40.0%
!! TACTGCCATGGTGTTTTAAG+TGG - chr7_1:78798659-78798678 Msa1041210:intron 40.0%
!! ACTGCCATGGTGTTTTAAGT+GGG - chr7_1:78798660-78798679 Msa1041210:intron 40.0%
!! GTTATTACATTGATGGCGGA+TGG + chr7_1:78798733-78798752 None:intergenic 40.0%
ATAACCAGGCTGCTAAATTG+CGG - chr7_1:78798947-78798966 Msa1041210:intron 40.0%
AGAGTCTTCTCAGTTGGAAA+TGG - chr7_1:78799065-78799084 Msa1041210:CDS 40.0%
GCATATTCATTAGCAGCTTC+AGG + chr7_1:78799093-78799112 None:intergenic 40.0%
GACACAAACACAAAAGTCCA+TGG - chr7_1:78799240-78799259 Msa1041210:CDS 40.0%
GGTTTAGATAAGCAGGATGA+AGG - chr7_1:78799284-78799303 Msa1041210:CDS 40.0%
ACGAGGAACTGACTAGAAAA+AGG - chr7_1:78799342-78799361 Msa1041210:intron 40.0%
ATCAGCAGCATTCTCATCAT+CGG + chr7_1:78799414-78799433 None:intergenic 40.0%
! ACAAAAGACACTAGAAGTGC+TGG - chr7_1:78799475-78799494 Msa1041210:CDS 40.0%
AGATGATGAAATGCCCAAGT+CGG - chr7_1:78799502-78799521 Msa1041210:intron 40.0%
AAAGATAGCAATCCCGACTT+GGG + chr7_1:78799518-78799537 None:intergenic 40.0%
TAAAGATAGCAATCCCGACT+TGG + chr7_1:78799519-78799538 None:intergenic 40.0%
ATTAGTTACCCAACCTCTGA+TGG - chr7_1:78799595-78799614 Msa1041210:intron 40.0%
TCACCCTTTCCAGTATCAAT+AGG + chr7_1:78799713-78799732 None:intergenic 40.0%
GTGATCTCCAACTATGATGA+AGG - chr7_1:78799729-78799748 Msa1041210:CDS 40.0%
TACCACAACAAATCAGATGG+AGG + chr7_1:78799853-78799872 None:intergenic 40.0%
TGAAGATTCCATGAAGAAGC+TGG - chr7_1:78799941-78799960 Msa1041210:CDS 40.0%
!! TGGCAGAAGAGTATTTGGAA+TGG - chr7_1:78800007-78800026 Msa1041210:CDS 40.0%
ATGGCTAAAGCCCAAACAAT+TGG - chr7_1:78800026-78800045 Msa1041210:CDS 40.0%
! TTACGATAACAGTGATAGCG+AGG - chr7_1:78800079-78800098 Msa1041210:CDS 40.0%
!!! CTCAATGTTGCCACTTTTCT+TGG + chr7_1:78800117-78800136 None:intergenic 40.0%
AAGTGGCAACATTGAGAATG+AGG - chr7_1:78800121-78800140 Msa1041210:CDS 40.0%
AGTGGCAACATTGAGAATGA+GGG - chr7_1:78800122-78800141 Msa1041210:CDS 40.0%
!!! TTCGTATGTAGTTTTTGGCC+CGG + chr7_1:78800357-78800376 None:intergenic 40.0%
! CCATGTATCTGAGGCAAATA+TGG + chr7_1:78800384-78800403 None:intergenic 40.0%
CCATATTTGCCTCAGATACA+TGG - chr7_1:78800381-78800400 Msa1041210:intron 40.0%
TGCCTCAGATACATGGAAAA+AGG - chr7_1:78800388-78800407 Msa1041210:intron 40.0%
!! TGATTTACTGATAATGGGGC+AGG - chr7_1:78800500-78800519 Msa1041210:CDS 40.0%
GGGCAGGCAAAAAACAAAAA+TGG - chr7_1:78800516-78800535 Msa1041210:CDS 40.0%
GATAGCGATACAGATGATGA+AGG - chr7_1:78800708-78800727 Msa1041210:CDS 40.0%
TACAGATGATGAAGGACAGA+TGG - chr7_1:78800716-78800735 Msa1041210:CDS 40.0%
TTCATGTTCTTTGACCATCC+AGG + chr7_1:78800958-78800977 None:intergenic 40.0%
AGCATCCTTTCTCTTCTTGA+GGG + chr7_1:78801006-78801025 None:intergenic 40.0%
! CTCTGAGAAATCAAGCAAGA+AGG - chr7_1:78801046-78801065 Msa1041210:CDS 40.0%
GACTATGTCGGAAATTGCAA+TGG - chr7_1:78801136-78801155 Msa1041210:intron 40.0%
TACCATATGTTGTTGCAGAG+TGG - chr7_1:78801234-78801253 Msa1041210:intron 40.0%
ACCATATGTTGTTGCAGAGT+GGG - chr7_1:78801235-78801254 Msa1041210:intron 40.0%
AAGTTTGGCAAAGATAACCC+TGG + chr7_1:78801323-78801342 None:intergenic 40.0%
GATCGACAATACTTCAGTGT+TGG - chr7_1:78801615-78801634 Msa1041210:intron 40.0%
! TGTCATGTTAGGTTGTTCTC+AGG - chr7_1:78801767-78801786 Msa1041210:intron 40.0%
CAAGTTAGAATCAGCTATGG+AGG + chr7_1:78801807-78801826 None:intergenic 40.0%
AACAGTACAGAAGACAATGG+TGG + chr7_1:78802095-78802114 None:intergenic 40.0%
TCTCAGTCAAGTTATTGTGC+CGG - chr7_1:78802124-78802143 Msa1041210:CDS 40.0%
!!! GAAAAGGCACCGTTTTTGTT+TGG + chr7_1:78802190-78802209 None:intergenic 40.0%
CTACATTTGGACCTCTTACT+CGG - chr7_1:78802279-78802298 Msa1041210:CDS 40.0%
!! GATATACTTACGGGTTTTGG+AGG - chr7_1:78802449-78802468 Msa1041210:intron 40.0%
ACCAAAGGCAATGATAGCAA+AGG - chr7_1:78802688-78802707 Msa1041210:intron 40.0%
AAAGTCGAAGTTGAAGGTCA+AGG - chr7_1:78802732-78802751 Msa1041210:intron 40.0%
AAGTCGAAGTTGAAGGTCAA+GGG - chr7_1:78802733-78802752 Msa1041210:intron 40.0%
GGTCAAGGGAAAAAAGTAAG+TGG - chr7_1:78802747-78802766 Msa1041210:CDS 40.0%
!! AATAGACCGATTTTGGTAGG+CGG - chr7_1:78802861-78802880 Msa1041210:CDS 40.0%
TCCCTCGTTCTATTATCTCT+TGG + chr7_1:78802900-78802919 None:intergenic 40.0%
CGTTGAAGCAGAGAATGTGT+TGG + chr7_1:78796958-78796977 None:intergenic 45.0%
!!! ACTTCTTTTTTCCGGTGTGG+CGG + chr7_1:78797033-78797052 None:intergenic 45.0%
CATCAACATCAACAGGGGTA+GGG + chr7_1:78797138-78797157 None:intergenic 45.0%
TCATCAACATCAACAGGGGT+AGG + chr7_1:78797139-78797158 None:intergenic 45.0%
AACAACCCCAAGAAGAATCC+AGG - chr7_1:78797191-78797210 Msa1041210:three_prime_UTR 45.0%
GTCGTAACGCTTATTCTTCC+TGG + chr7_1:78797212-78797231 None:intergenic 45.0%
! CAATCTGATGATGACGACGA+CGG - chr7_1:78797363-78797382 Msa1041210:CDS 45.0%
GATCGTCACGAAGAGGATTA+AGG + chr7_1:78797771-78797790 None:intergenic 45.0%
AACCGGAGTCTTGAATGATC+AGG + chr7_1:78797793-78797812 None:intergenic 45.0%
TGTTCATGCACCACTTCCAA+AGG - chr7_1:78797846-78797865 Msa1041210:intron 45.0%
ATCATGGACTCGGAATGCAT+GGG + chr7_1:78798245-78798264 None:intergenic 45.0%
AATCATGGACTCGGAATGCA+TGG + chr7_1:78798246-78798265 None:intergenic 45.0%
GAGGGGGAGATTAAATAGAG+AGG + chr7_1:78798564-78798583 None:intergenic 45.0%
!! ATTACATTGATGGCGGATGG+AGG + chr7_1:78798730-78798749 None:intergenic 45.0%
CATGAAACAAGAACGCCAGA+GGG - chr7_1:78799113-78799132 Msa1041210:CDS 45.0%
ACATATATACCTCAGCCCTC+TGG + chr7_1:78799131-78799150 None:intergenic 45.0%
! TGCATTTTACGCTGAAGCCA+TGG + chr7_1:78799260-78799279 None:intergenic 45.0%
CTTCAGCGTAAAATGCAACG+TGG - chr7_1:78799263-78799282 Msa1041210:CDS 45.0%
GCAACGTGGTTTAGATAAGC+AGG - chr7_1:78799277-78799296 Msa1041210:CDS 45.0%
!! GAATGCTGCTGATTCTGATC+CGG - chr7_1:78799421-78799440 Msa1041210:intron 45.0%
!! TGCTGATTCTGATCCGGATA+AGG - chr7_1:78799427-78799446 Msa1041210:CDS 45.0%
!! AAAGACACTAGAAGTGCTGG+AGG - chr7_1:78799478-78799497 Msa1041210:CDS 45.0%
GATGATGAAATGCCCAAGTC+GGG - chr7_1:78799503-78799522 Msa1041210:intron 45.0%
CCATAGTCTTTGTGGGCATT+AGG + chr7_1:78799637-78799656 None:intergenic 45.0%
CCTAATGCCCACAAAGACTA+TGG - chr7_1:78799634-78799653 Msa1041210:CDS 45.0%
! TTTGTTGTGGTATAGAGGCG+TGG - chr7_1:78799861-78799880 Msa1041210:CDS 45.0%
AGATTCCATGAAGAAGCTGG+AGG - chr7_1:78799944-78799963 Msa1041210:CDS 45.0%
AGAATCCTCCAGCTTCTTCA+TGG + chr7_1:78799952-78799971 None:intergenic 45.0%
AAGAAGCTGGAGGATTCTGA+TGG - chr7_1:78799954-78799973 Msa1041210:CDS 45.0%
!!! CCACTGGTAGATGCTACTTT+TGG + chr7_1:78799990-78800009 None:intergenic 45.0%
CCAAAAGTAGCATCTACCAG+TGG - chr7_1:78799987-78800006 Msa1041210:CDS 45.0%
!! ACCAGTGGCAGAAGAGTATT+TGG - chr7_1:78800002-78800021 Msa1041210:CDS 45.0%
TCCAAATACTCTTCTGCCAC+TGG + chr7_1:78800006-78800025 None:intergenic 45.0%
! TGATAGCGAGGATGACTTTG+AGG - chr7_1:78800091-78800110 Msa1041210:CDS 45.0%
!! GACTTTGAGGCCAAGAAAAG+TGG - chr7_1:78800104-78800123 Msa1041210:CDS 45.0%
!!! TCGTATGTAGTTTTTGGCCC+GGG + chr7_1:78800356-78800375 None:intergenic 45.0%
ACCTTTACATCGTGCCTAAC+AGG + chr7_1:78800582-78800601 None:intergenic 45.0%
AGATGATGAAGGACAGATGG+TGG - chr7_1:78800719-78800738 Msa1041210:CDS 45.0%
CATCTCAAGAGGAGCTCATT+CGG - chr7_1:78800784-78800803 Msa1041210:intron 45.0%
! TCATTCGGCAAGCTTTTGCT+GGG - chr7_1:78800799-78800818 Msa1041210:intron 45.0%
! GCTCGGGATTTTCTTCATTG+AGG + chr7_1:78800866-78800885 None:intergenic 45.0%
TAATAGAGGCTTCTCAGGCT+CGG + chr7_1:78800883-78800902 None:intergenic 45.0%
GGAAGTAATAGAGGCTTCTC+AGG + chr7_1:78800888-78800907 None:intergenic 45.0%
GAGAAGCCTCTATTACTTCC+TGG - chr7_1:78800888-78800907 Msa1041210:CDS 45.0%
AGCCTCTATTACTTCCTGGT+TGG - chr7_1:78800892-78800911 Msa1041210:CDS 45.0%
GCCTCTATTACTTCCTGGTT+GGG - chr7_1:78800893-78800912 Msa1041210:CDS 45.0%
CCTCTATTACTTCCTGGTTG+GGG - chr7_1:78800894-78800913 Msa1041210:CDS 45.0%
GAAAGGTTTACCATCCTGGA+TGG - chr7_1:78800941-78800960 Msa1041210:CDS 45.0%
TGTTCTTTGACCATCCAGGA+TGG + chr7_1:78800954-78800973 None:intergenic 45.0%
! GGCTTCTTCCCTTTTTCTCT+GGG + chr7_1:78800985-78801004 None:intergenic 45.0%
AGAAGCCCTCAAGAAGAGAA+AGG - chr7_1:78800998-78801017 Msa1041210:CDS 45.0%
GAGCATCCTTTCTCTTCTTG+AGG + chr7_1:78801007-78801026 None:intergenic 45.0%
TCCCACTCTGCAACAACATA+TGG + chr7_1:78801239-78801258 None:intergenic 45.0%
ATTCAGTTCCTCCAGCCAAA+TGG + chr7_1:78801655-78801674 None:intergenic 45.0%
TGTATGTTCGGTTCCACTTC+TGG - chr7_1:78801706-78801725 Msa1041210:intron 45.0%
GGGTTAGATTCAGGTCCAAT+GGG + chr7_1:78802254-78802273 None:intergenic 45.0%
CATTGGACCTGAATCTAACC+CGG - chr7_1:78802253-78802272 Msa1041210:CDS 45.0%
TCTAACCCGGCAACTACATT+TGG - chr7_1:78802266-78802285 Msa1041210:CDS 45.0%
AGAGGTCCAAATGTAGTTGC+CGG + chr7_1:78802275-78802294 None:intergenic 45.0%
! GCCTTTGCTATCATTGCCTT+TGG + chr7_1:78802692-78802711 None:intergenic 45.0%
AAGCTTCCGCCTACCAAAAT+CGG + chr7_1:78802870-78802889 None:intergenic 45.0%
!!! TTAATTTTTTTTTACTTTTT+CGG - chr7_1:78798501-78798520 Msa1041210:intron 5.0%
AGATGAAGGCAAACGAGGAC+CGG + chr7_1:78797089-78797108 None:intergenic 50.0%
! CTCTGATGATGATTCTGGGG+AGG - chr7_1:78797422-78797441 Msa1041210:CDS 50.0%
! AAAAGGCTTGCTCGGCATAC+CGG + chr7_1:78797487-78797506 None:intergenic 50.0%
! ATGCCGAGCAAGCCTTTTGA+TGG - chr7_1:78797489-78797508 Msa1041210:intron 50.0%
TCTGCAGCAACAACAGCTAG+TGG + chr7_1:78797579-78797598 None:intergenic 50.0%
TCGTAGGCAATAAGAAGGCG+AGG - chr7_1:78797650-78797669 Msa1041210:intron 50.0%
CCTTCCACAACATCGTGACT+AGG + chr7_1:78797721-78797740 None:intergenic 50.0%
CCTAGTCACGATGTTGTGGA+AGG - chr7_1:78797718-78797737 Msa1041210:CDS 50.0%
CACGATGTTGTGGAAGGTGA+TGG - chr7_1:78797724-78797743 Msa1041210:CDS 50.0%
CGTCACGAAGAGGATTAAGG+AGG + chr7_1:78797768-78797787 None:intergenic 50.0%
TGATCAGGATCGTCACGAAG+AGG + chr7_1:78797778-78797797 None:intergenic 50.0%
! GCTTGATCTGCCTTTGGAAG+TGG + chr7_1:78797859-78797878 None:intergenic 50.0%
TCCAAAGGCAGATCAAGCGA+AGG - chr7_1:78797861-78797880 Msa1041210:intron 50.0%
ACCTTCGCTTGATCTGCCTT+TGG + chr7_1:78797865-78797884 None:intergenic 50.0%
AAAGGCAGATCAAGCGAAGG+TGG - chr7_1:78797864-78797883 Msa1041210:intron 50.0%
CAGATCAAGCGAAGGTGGAA+AGG - chr7_1:78797869-78797888 Msa1041210:intron 50.0%
TCAAGCGAAGGTGGAAAGGA+AGG - chr7_1:78797873-78797892 Msa1041210:intron 50.0%
! AACCTTGGCGGACATAACTG+AGG - chr7_1:78798456-78798475 Msa1041210:intron 50.0%
TGAGAAGGATGGGCATAACC+AGG - chr7_1:78798933-78798952 Msa1041210:intron 50.0%
GAAGGCAGAGTCTTCTCAGT+TGG - chr7_1:78799059-78799078 Msa1041210:CDS 50.0%
! CCTCTGGCGTTCTTGTTTCA+TGG + chr7_1:78799115-78799134 None:intergenic 50.0%
CCATGAAACAAGAACGCCAG+AGG - chr7_1:78799112-78799131 Msa1041210:CDS 50.0%
ATCACTGCTGCTACTGTCCA+TGG + chr7_1:78799372-78799391 None:intergenic 50.0%
!! GGCCTCCATCTGATTTGTTG+TGG - chr7_1:78799848-78799867 Msa1041210:CDS 50.0%
! TGTGGTATAGAGGCGTGGAT+TGG - chr7_1:78799866-78799885 Msa1041210:CDS 50.0%
GGGAAGTGATCATCTGCAGA+AGG - chr7_1:78800142-78800161 Msa1041210:intron 50.0%
GCCTGTTAGGCACGATGTAA+AGG - chr7_1:78800578-78800597 Msa1041210:CDS 50.0%
!! GATGAAGGACAGATGGTGGA+TGG - chr7_1:78800723-78800742 Msa1041210:CDS 50.0%
CGAATGAGCTCCTCTTGAGA+TGG + chr7_1:78800786-78800805 None:intergenic 50.0%
! CTCATTCGGCAAGCTTTTGC+TGG - chr7_1:78800798-78800817 Msa1041210:intron 50.0%
! CATTCGGCAAGCTTTTGCTG+GGG - chr7_1:78800800-78800819 Msa1041210:intron 50.0%
AATAGAGGCTTCTCAGGCTC+GGG + chr7_1:78800882-78800901 None:intergenic 50.0%
CCCCAACCAGGAAGTAATAG+AGG + chr7_1:78800897-78800916 None:intergenic 50.0%
TACTTCCTGGTTGGGGTCAA+TGG - chr7_1:78800901-78800920 Msa1041210:CDS 50.0%
! GGGCTTCTTCCCTTTTTCTC+TGG + chr7_1:78800986-78801005 None:intergenic 50.0%
GTCTACGGCTCTATGCCATT+TGG - chr7_1:78801637-78801656 Msa1041210:intron 50.0%
!!! TGCGTGTGCGTTTGGTTTTG+CGG + chr7_1:78802038-78802057 None:intergenic 50.0%
GTACAGAAGACAATGGTGGC+TGG + chr7_1:78802091-78802110 None:intergenic 50.0%
CAGAGTATGCGTATGCCCAT+TGG - chr7_1:78802236-78802255 Msa1041210:CDS 50.0%
! CGGGTTAGATTCAGGTCCAA+TGG + chr7_1:78802255-78802274 None:intergenic 50.0%
! GTAGTTGCCGGGTTAGATTC+AGG + chr7_1:78802263-78802282 None:intergenic 50.0%
GAGGTCCAAATGTAGTTGCC+GGG + chr7_1:78802274-78802293 None:intergenic 50.0%
CTTACTTCAGGCCGAGTAAG+AGG + chr7_1:78802293-78802312 None:intergenic 50.0%
CTCACGATAAACCAGAGCAG+CGG - chr7_1:78802632-78802651 Msa1041210:CDS 50.0%
CTAAACCTAGCGGCGTTGCT+AGG - chr7_1:78796919-78796938 Msa1041210:three_prime_UTR 55.0%
! TTTTCCGGTGTGGCGGTTGT+TGG + chr7_1:78797026-78797045 None:intergenic 55.0%
AGCGAAGGTGGAAAGGAAGG+TGG - chr7_1:78797876-78797895 Msa1041210:intron 55.0%
ACTCGGAATGCATGGGAACC+TGG + chr7_1:78798238-78798257 None:intergenic 55.0%
CTCCTCAGTTATGTCCGCCA+AGG + chr7_1:78798461-78798480 None:intergenic 55.0%
! CTTGGCGGACATAACTGAGG+AGG - chr7_1:78798459-78798478 Msa1041210:intron 55.0%
! TGGCGGATGGAGGACAATAG+CGG + chr7_1:78798720-78798739 None:intergenic 55.0%
TCAGTCCATTGACCCCAACC+AGG + chr7_1:78800909-78800928 None:intergenic 55.0%
! ACGGCTCTATGCCATTTGGC+TGG - chr7_1:78801641-78801660 Msa1041210:intron 55.0%
! GCTCTATGCCATTTGGCTGG+AGG - chr7_1:78801644-78801663 Msa1041210:intron 55.0%
CAAACGCACACGCACTCAGT+GGG - chr7_1:78802044-78802063 Msa1041210:CDS 55.0%
AGACAATGGTGGCTGGCAAG+TGG + chr7_1:78802084-78802103 None:intergenic 55.0%
GTGCAGGTGGTGAAGAAACC+AGG - chr7_1:78802571-78802590 Msa1041210:CDS 55.0%
! CGCTGCTCTGGTTTATCGTG+AGG + chr7_1:78802634-78802653 None:intergenic 55.0%
GTAGACCTAGCAACGCCGCT+AGG + chr7_1:78796927-78796946 None:intergenic 60.0%
GGCTCCGCAATTTAGCAGCC+TGG + chr7_1:78798954-78798973 None:intergenic 60.0%
ACAAGAACGCCAGAGGGCTG+AGG - chr7_1:78799119-78799138 Msa1041210:CDS 60.0%
CCACTGAGTGCGTGTGCGTT+TGG + chr7_1:78802046-78802065 None:intergenic 60.0%
CCAAACGCACACGCACTCAG+TGG - chr7_1:78802043-78802062 Msa1041210:CDS 60.0%
ACACTCTGTTGCCGCTGCTC+TGG + chr7_1:78802646-78802665 None:intergenic 60.0%
GACGCCAACAACCGCCACAC+CGG - chr7_1:78797019-78797038 Msa1041210:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 78796863 78803160 78796863 ID=Msa1041210;Name=Msa1041210
chr7_1 mRNA 78796863 78803160 78796863 ID=Msa1041210-mRNA-1;Parent=Msa1041210;Name=Msa1041210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=126|1|0.9|1|1|1|10|395|931
chr7_1 exon 78796863 78797446 78796863 ID=Msa1041210-mRNA-1:exon:21097;Parent=Msa1041210-mRNA-1
chr7_1 exon 78797716 78797847 78797716 ID=Msa1041210-mRNA-1:exon:21096;Parent=Msa1041210-mRNA-1
chr7_1 exon 78798956 78799342 78798956 ID=Msa1041210-mRNA-1:exon:21095;Parent=Msa1041210-mRNA-1
chr7_1 exon 78799424 78799501 78799424 ID=Msa1041210-mRNA-1:exon:21094;Parent=Msa1041210-mRNA-1
chr7_1 exon 78799614 78800147 78799614 ID=Msa1041210-mRNA-1:exon:21093;Parent=Msa1041210-mRNA-1
chr7_1 exon 78800476 78800799 78800476 ID=Msa1041210-mRNA-1:exon:21092;Parent=Msa1041210-mRNA-1
chr7_1 exon 78800883 78801104 78800883 ID=Msa1041210-mRNA-1:exon:21091;Parent=Msa1041210-mRNA-1
chr7_1 exon 78801886 78802367 78801886 ID=Msa1041210-mRNA-1:exon:21090;Parent=Msa1041210-mRNA-1
chr7_1 exon 78802513 78802672 78802513 ID=Msa1041210-mRNA-1:exon:21089;Parent=Msa1041210-mRNA-1
chr7_1 exon 78802747 78803160 78802747 ID=Msa1041210-mRNA-1:exon:21088;Parent=Msa1041210-mRNA-1
chr7_1 five_prime_UTR 78803035 78803160 78803035 ID=Msa1041210-mRNA-1:five_prime_utr;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78802747 78803034 78802747 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78802513 78802672 78802513 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78801886 78802367 78801886 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78800883 78801104 78800883 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78800476 78800799 78800476 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78799614 78800147 78799614 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78799424 78799501 78799424 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78798956 78799342 78798956 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78797716 78797847 78797716 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 CDS 78797258 78797446 78797258 ID=Msa1041210-mRNA-1:cds;Parent=Msa1041210-mRNA-1
chr7_1 three_prime_UTR 78796863 78797257 78796863 ID=Msa1041210-mRNA-1:three_prime_utr;Parent=Msa1041210-mRNA-1
Gene Sequence

>Msa1041210

ATGGCAGAGAAGAAGCGAAATGAAAGAGGCGACGCCAACAACCGCCACACCGGAAAAAAGAAGTCTAAGAAGACTTCCGACAATCAACGGAAGAAAACCGGTCCTCGTTTGCCTTCATCTTTGAAAAAAGAGATTCAACACTTAAACCCTACCCCTGTTGATGTTGATGAAATCGACAGCGATGTTTACGAATATGAAGAAGAACAACCCCAAGAAGAATCCAGGAAGAATAAGCGTTACGACCCTGTCTCTGTCAATGATAATAATGACCTTTCTTCTGATTTCGAGGATGAGAATGTACAATCTGATGATGACGACGACGGATATGATTTTATTGGAAAAAAGAGGAAGAAAATTGACTCTGATGATGATTCTGGGGAGGAAGATGATGAGAGACATGAAAGGATGTTACAACGAATTACCGGTATGCCGAGCAAGCCTTTTGATGGCAATAAGAAGGCGAGGAAGAATGATGTTATTCCGGAGCTATATCTAGAGTCTGAAAATAATCCTAGTCACGATGTTGTGGAAGGTGATGGACGAATTACTATCGAGGACCTCCTTAATCCTCTTCGTGACGATCCTGATCATTCAAGACTCCGGTTAAGAAATCAACAAATTGAGAATCGTTCTAGAACTGTTCATGCACCACTTCCAAAGGCAGATCAAGCGAAGGTGGAAAGGAAGGTGGCGTATGACATATCAAAGAAACAAGTCACAAAGTGGCAACCCCTTATTCAGAGAAATAGGGAGGCTCCTACTAAGTACTTTGATGAAAAGACAGATCTAGGGTTTTCAACTATAGGAGCAATAGCTTCTGAATTTGAACCCAGAACTAAATTTGAGAGGAATATGGCTGCACTAGTTCATCATGACAAAATTATGGAAGCTCATAAAAACGATGGTGGTAGTCTTCTTGACATGAACAAGGTTTCTATAAAGGATGAGAAGGATGGGCATAACCAGGCTGCTAAATTGCGGAGCCTTCTTTTTCGTCATGAGATGAAGGCAAAACATGTTAAAAAGATTAAGTCCAAAACATATCATCGTCTGTTAAAGAAAGTTAGATTGAAGGCAGAGTCTTCTCAGTTGGAAATGGATCCTGAAGCTGCTAATGAATATGCCATGAAACAAGAACGCCAGAGGGCTGAGGAACGCATGACTCTGAGACACAAACACAAAAGTCCATGGCTTCAGCGTAAAATGCAACGTGGTTTAGATAAGCAGGATGAAGGAACTCGTGCTGCCGTGACTGAACATTTTCAAAGACACGAGGAACTGACTAGAAAAAGGAAAACCATGGACAGTAGCAGCAGTGATGATAGCACTTATGAAGATGCCGATGATGAGAATGCTGCTGATTCTGATCCGGATAAGGCAAACAAGATTTTGCGAAAAGCAAAACAAAAGACACTAGAAGTGCTGGAGGAAGATGATGAAATGCCCAAGTCGGGATTGCTATCTTTACCTTTTATGAGGCGTGGATTGGAGAAAAGAAAAGAAGCAACTATTGAAGAAGTCAACCTTACTGTACAAGAATATGAAGATTCCATGAAGAAGCTGGAGGATTCTGATGGCTCAGAAGATCCAAAAGTAGCATCTACCAGTGGCAGAAGAGTATTTGGAATGGCTAAAGCCCAAACAATTGGTGCTGATAATAAGGTGGAATTAGATAAGTTTTACGATAACAGTGATAGCGAGGATGACTTTGAGGCCAAGAAAAGTGGCAACATTGAGAATGAGGGAAGTGATCATCTGCAGAAGGATGTCATCAATGATTCAGTTTTAAATCAAGAGAATATCAATACTCGCAAAGAATCTGTTTTTAAGGTGAATAATTTCCTATTTTCTTGGACTTCTCAGATGTTTGTTTTACTTAATGGTAATGGGTATAACACATTTTATGCATTTCTTGAAACTTGGTCACAGAACTTTGATGAGATTGTAAAAAATCCCGGGCCAAAAACTACATACGAAGTTTCCATATTTGCCTCAGATACATGGAAAAAGGCAAAAAACAAAAATGGTATAGACACAGACATCAAGAAGTCTTCAAAGTTTAATAGGCCTGTTAGGCACGATGTAAAGAGCTCTGAAAAAGATCAATTGGGAGAGGATAGCGATACAGATGATGAAGGACAGATGGTGGATGGAATTCTGACTTCTGCATCTAAACCATCTTATGAACTTCCATCTCAAGAGGAGCTCATTCGGCAAGCTTTTGCTGGGGATGATGTAGAAGATGATTTTGAAAAGGATAAGCAGGAGATCCTCAATGAAGAAAATCCCGAGCCTGAGAAGCCTCTATTACTTCCTGGTTGGGGTCAATGGACTGATATACAGCAAAAGAAAGGTTTACCATCCTGGATGGTCAAAGAACATGAAAGTTCCCAGAGAAAAAGGGAAGAAGCCCTCAAGAAGAGAAAGGATGCTCAGTTAAAAAATGTCATCATCTCTGAGAAATCAAGCAAGAAGGCCGAGAAACTCCAAACAAAAACGGTGCCTTTTCCTTATACTTCCAAAGATGTCTTTCATCAGAGTATGCGTATGCCCATTGGACCTGAATCTAACCCGGCAACTACATTTGGACCTCTTACTCGGCCTGAAGTGGTGAAGAAACCAGGTGTTATTATAAAACCGATAGAATTTGAGGAAGTGAATCCTCACGATAAACCAGAGCAGCGGCAACAGAGTGTTAAGAACAAGAAGTTGAATAGAACCAAAGGCAATGATAGCAAAGGCAATGATAGCAAAGCCATAAAAAAGTCGAAGTTGAAGGTCAAGGGAAAAAAGTAA

Protein sequence

>Msa1041210

MAEKKRNERGDANNRHTGKKKSKKTSDNQRKKTGPRLPSSLKKEIQHLNPTPVDVDEIDSDVYEYEEEQPQEESRKNKRYDPVSVNDNNDLSSDFEDENVQSDDDDDGYDFIGKKRKKIDSDDDSGEEDDERHERMLQRITGMPSKPFDGNKKARKNDVIPELYLESENNPSHDVVEGDGRITIEDLLNPLRDDPDHSRLRLRNQQIENRSRTVHAPLPKADQAKVERKVAYDISKKQVTKWQPLIQRNREAPTKYFDEKTDLGFSTIGAIASEFEPRTKFERNMAALVHHDKIMEAHKNDGGSLLDMNKVSIKDEKDGHNQAAKLRSLLFRHEMKAKHVKKIKSKTYHRLLKKVRLKAESSQLEMDPEAANEYAMKQERQRAEERMTLRHKHKSPWLQRKMQRGLDKQDEGTRAAVTEHFQRHEELTRKRKTMDSSSSDDSTYEDADDENAADSDPDKANKILRKAKQKTLEVLEEDDEMPKSGLLSLPFMRRGLEKRKEATIEEVNLTVQEYEDSMKKLEDSDGSEDPKVASTSGRRVFGMAKAQTIGADNKVELDKFYDNSDSEDDFEAKKSGNIENEGSDHLQKDVINDSVLNQENINTRKESVFKVNNFLFSWTSQMFVLLNGNGYNTFYAFLETWSQNFDEIVKNPGPKTTYEVSIFASDTWKKAKNKNGIDTDIKKSSKFNRPVRHDVKSSEKDQLGEDSDTDDEGQMVDGILTSASKPSYELPSQEELIRQAFAGDDVEDDFEKDKQEILNEENPEPEKPLLLPGWGQWTDIQQKKGLPSWMVKEHESSQRKREEALKKRKDAQLKNVIISEKSSKKAEKLQTKTVPFPYTSKDVFHQSMRMPIGPESNPATTFGPLTRPEVVKKPGVIIKPIEFEEVNPHDKPEQRQQSVKNKKLNRTKGNDSKGNDSKAIKKSKLKVKGKK*