Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000608.t1 | RHN64611.1 | 86 | 629 | 84 | 4 | 1 | 625 | 1 | 629 | 7.30E-271 | 943 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000608.t1 | Q9S9P3 | 55.2 | 632 | 269 | 5 | 5 | 624 | 4 | 633 | 2.9e-167 | 590.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000608.t1 | A0A396IIA7 | 86.0 | 629 | 84 | 4 | 1 | 625 | 1 | 629 | 5.2e-271 | 943.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86666 | MS.gene000608 | PPI |
| MS.gene001928 | MS.gene000608 | PPI |
| MS.gene91547 | MS.gene000608 | PPI |
| MS.gene012586 | MS.gene000608 | PPI |
| MS.gene044806 | MS.gene000608 | PPI |
| MS.gene035571 | MS.gene000608 | PPI |
| MS.gene44056 | MS.gene000608 | PPI |
| MS.gene035629 | MS.gene000608 | PPI |
| MS.gene73119 | MS.gene000608 | PPI |
| MS.gene40741 | MS.gene000608 | PPI |
| MS.gene035805 | MS.gene000608 | PPI |
| MS.gene042281 | MS.gene000608 | PPI |
| MS.gene005189 | MS.gene000608 | PPI |
| MS.gene012587 | MS.gene000608 | PPI |
| MS.gene042280 | MS.gene000608 | PPI |
| MS.gene012589 | MS.gene000608 | PPI |
| MS.gene053226 | MS.gene000608 | PPI |
| MS.gene000608 | MS.gene012586 | PPI |
| MS.gene042282 | MS.gene000608 | PPI |
| MS.gene52620 | MS.gene000608 | PPI |
| MS.gene035570 | MS.gene000608 | PPI |
| MS.gene000608 | MS.gene042280 | PPI |
| MS.gene064542 | MS.gene000608 | PPI |
| MS.gene62095 | MS.gene000608 | PPI |
| MS.gene88066 | MS.gene000608 | PPI |
| MS.gene034251 | MS.gene000608 | PPI |
| MS.gene012490 | MS.gene000608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000608.t1 | MTR_4g006760 | 97.284 | 626 | 17 | 0 | 1 | 626 | 1 | 626 | 0.0 | 1240 |
| MS.gene000608.t1 | MTR_4g125920 | 87.281 | 629 | 76 | 4 | 1 | 625 | 1 | 629 | 0.0 | 1051 |
| MS.gene000608.t1 | MTR_4g131350 | 86.645 | 629 | 80 | 4 | 1 | 625 | 54 | 682 | 0.0 | 1043 |
| MS.gene000608.t1 | MTR_4g131310 | 72.284 | 451 | 81 | 5 | 1 | 446 | 1 | 412 | 0.0 | 573 |
| MS.gene000608.t1 | MTR_4g131310 | 86.765 | 68 | 9 | 0 | 550 | 617 | 390 | 457 | 3.08e-30 | 124 |
| MS.gene000608.t1 | MTR_3g067815 | 43.302 | 642 | 339 | 9 | 1 | 622 | 1 | 637 | 3.17e-171 | 502 |
| MS.gene000608.t1 | MTR_5g079940 | 40.979 | 654 | 348 | 13 | 5 | 625 | 472 | 1120 | 1.32e-143 | 445 |
| MS.gene000608.t1 | MTR_5g079940 | 44.231 | 104 | 54 | 4 | 1 | 102 | 1 | 102 | 4.04e-16 | 82.8 |
| MS.gene000608.t1 | MTR_5g079940 | 43.023 | 86 | 43 | 3 | 19 | 103 | 131 | 211 | 4.86e-14 | 76.3 |
| MS.gene000608.t1 | MTR_5g079940 | 41.860 | 86 | 45 | 2 | 19 | 103 | 247 | 328 | 6.97e-14 | 75.9 |
| MS.gene000608.t1 | MTR_5g079940 | 40.426 | 94 | 52 | 3 | 5 | 94 | 353 | 446 | 7.86e-12 | 68.9 |
| MS.gene000608.t1 | MTR_2g097020 | 35.180 | 668 | 345 | 16 | 13 | 614 | 10 | 655 | 1.21e-106 | 337 |
| MS.gene000608.t1 | MTR_2g097010 | 35.131 | 649 | 344 | 13 | 31 | 614 | 30 | 666 | 1.96e-101 | 323 |
| MS.gene000608.t1 | MTR_4g046643 | 36.120 | 634 | 338 | 16 | 31 | 608 | 30 | 652 | 3.39e-95 | 308 |
| MS.gene000608.t1 | MTR_2g095400 | 34.215 | 643 | 361 | 12 | 10 | 614 | 7 | 625 | 1.42e-85 | 280 |
| MS.gene000608.t1 | MTR_4g126200 | 43.511 | 262 | 117 | 4 | 381 | 624 | 3 | 251 | 4.47e-61 | 204 |
| MS.gene000608.t1 | MTR_2g097000 | 37.467 | 379 | 196 | 8 | 266 | 614 | 10 | 377 | 4.63e-57 | 197 |
| MS.gene000608.t1 | MTR_3g067855 | 50.685 | 219 | 104 | 4 | 408 | 625 | 123 | 338 | 3.88e-55 | 191 |
| MS.gene000608.t1 | MTR_3g067845 | 42.460 | 252 | 139 | 4 | 376 | 625 | 4 | 251 | 4.36e-47 | 167 |
| MS.gene000608.t1 | MTR_3g067825 | 48.000 | 100 | 42 | 3 | 533 | 625 | 7 | 103 | 1.74e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000608.t1 | AT1G15910 | 56.543 | 619 | 255 | 5 | 18 | 624 | 17 | 633 | 0.0 | 671 |
| MS.gene000608.t1 | AT4G00380 | 54.854 | 618 | 266 | 4 | 19 | 624 | 18 | 634 | 0.0 | 650 |
| MS.gene000608.t1 | AT4G00380 | 54.854 | 618 | 266 | 4 | 19 | 624 | 18 | 634 | 0.0 | 650 |
| MS.gene000608.t1 | AT4G00380 | 51.707 | 615 | 262 | 5 | 19 | 624 | 18 | 606 | 0.0 | 603 |
| MS.gene000608.t1 | AT1G80790 | 54.032 | 620 | 268 | 9 | 19 | 625 | 19 | 634 | 0.0 | 598 |
| MS.gene000608.t1 | AT1G80790 | 54.032 | 620 | 268 | 9 | 19 | 625 | 19 | 634 | 0.0 | 598 |
| MS.gene000608.t1 | AT3G48670 | 41.429 | 630 | 344 | 11 | 16 | 625 | 21 | 645 | 3.11e-148 | 443 |
| MS.gene000608.t1 | AT3G48670 | 41.429 | 630 | 344 | 11 | 16 | 625 | 21 | 645 | 3.11e-148 | 443 |
| MS.gene000608.t1 | AT3G48670 | 41.429 | 630 | 344 | 11 | 16 | 625 | 21 | 645 | 3.11e-148 | 443 |
| MS.gene000608.t1 | AT1G80790 | 53.863 | 453 | 194 | 7 | 19 | 459 | 19 | 468 | 1.23e-147 | 436 |
| MS.gene000608.t1 | AT3G12550 | 36.063 | 635 | 371 | 11 | 16 | 621 | 5 | 633 | 9.66e-116 | 359 |
| MS.gene000608.t1 | AT3G12550 | 36.006 | 636 | 371 | 11 | 16 | 621 | 5 | 634 | 5.31e-115 | 357 |
| MS.gene000608.t1 | AT3G12550 | 36.006 | 636 | 371 | 11 | 16 | 621 | 5 | 634 | 5.31e-115 | 357 |
| MS.gene000608.t1 | AT3G12550 | 36.006 | 636 | 371 | 11 | 16 | 621 | 5 | 634 | 5.31e-115 | 357 |
| MS.gene000608.t1 | AT1G13790 | 38.519 | 540 | 303 | 7 | 93 | 615 | 197 | 724 | 1.86e-108 | 343 |
| MS.gene000608.t1 | AT1G13790 | 38.272 | 81 | 50 | 0 | 12 | 92 | 3 | 83 | 2.19e-12 | 70.9 |
| MS.gene000608.t1 | AT1G13790 | 38.519 | 540 | 303 | 7 | 93 | 615 | 197 | 724 | 1.86e-108 | 343 |
| MS.gene000608.t1 | AT1G13790 | 38.272 | 81 | 50 | 0 | 12 | 92 | 3 | 83 | 2.19e-12 | 70.9 |
| MS.gene000608.t1 | AT3G12550 | 33.694 | 555 | 334 | 10 | 16 | 542 | 5 | 553 | 1.58e-87 | 284 |
| MS.gene000608.t1 | AT5G59390 | 34.196 | 541 | 308 | 16 | 113 | 624 | 30 | 551 | 3.40e-79 | 261 |
| MS.gene000608.t1 | AT5G59390 | 34.196 | 541 | 308 | 16 | 113 | 624 | 30 | 551 | 3.40e-79 | 261 |
| MS.gene000608.t1 | AT5G59390 | 34.196 | 541 | 308 | 16 | 113 | 624 | 30 | 551 | 3.40e-79 | 261 |
| MS.gene000608.t1 | AT5G59390 | 33.883 | 546 | 308 | 17 | 113 | 624 | 30 | 556 | 1.13e-76 | 255 |
| MS.gene000608.t1 | AT5G59390 | 33.883 | 546 | 308 | 17 | 113 | 624 | 30 | 556 | 1.13e-76 | 255 |
| MS.gene000608.t1 | AT4G01180 | 33.959 | 533 | 299 | 15 | 113 | 614 | 28 | 538 | 7.38e-74 | 247 |
| MS.gene000608.t1 | AT4G01780 | 33.406 | 458 | 205 | 8 | 170 | 625 | 111 | 470 | 2.97e-64 | 219 |
| MS.gene000608.t1 | AT3G29375 | 44.776 | 201 | 105 | 2 | 424 | 624 | 32 | 226 | 3.42e-46 | 163 |
| MS.gene000608.t1 | AT3G29375 | 44.776 | 201 | 105 | 2 | 424 | 624 | 155 | 349 | 2.09e-44 | 162 |
| MS.gene000608.t1 | AT3G29375 | 41.406 | 128 | 68 | 3 | 424 | 551 | 32 | 152 | 1.82e-18 | 84.0 |
| MS.gene000608.t1 | AT2G16490 | 43.243 | 74 | 42 | 0 | 551 | 624 | 75 | 148 | 8.74e-15 | 73.2 |
Find 137 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTGTAACCACTTTAAA+AGG | 0.096361 | 4.3:+88610792 | None:intergenic |
| CAACTGAAGGATCTTGTTTA+AGG | 0.147603 | 4.3:+88611532 | None:intergenic |
| CTGTCGAGCTTTGCTCTTTA+TGG | 0.200712 | 4.3:-88610845 | MS.gene000608:CDS |
| CTTGGTGCCAATATTAGTTT+TGG | 0.243764 | 4.3:+88610947 | None:intergenic |
| ATGGAAATTGAAGAACTAAA+AGG | 0.270508 | 4.3:-88611476 | MS.gene000608:CDS |
| GGAAGACAAAATAGAAAGTT+TGG | 0.287888 | 4.3:-88611372 | MS.gene000608:CDS |
| ATAAGCAAATCACATGATTC+TGG | 0.315654 | 4.3:-88613168 | MS.gene000608:CDS |
| TACAAAGTGAAGAACAATAA+TGG | 0.316359 | 4.3:-88613456 | MS.gene000608:CDS |
| TTGGAATTCCATGGACTTGC+AGG | 0.324273 | 4.3:-88612980 | MS.gene000608:CDS |
| AATAGAAAGTTTGGAAGATA+TGG | 0.336318 | 4.3:-88611363 | MS.gene000608:CDS |
| AAAGCAGGAATTCAAATATA+AGG | 0.338005 | 4.3:-88613400 | MS.gene000608:CDS |
| TGTGGAACTTCAAAGAAAAT+AGG | 0.338398 | 4.3:-88610520 | MS.gene000608:CDS |
| ACTGGTGCCAAAACTAATAT+TGG | 0.346735 | 4.3:-88610954 | MS.gene000608:CDS |
| AGAAAAGTTGAGTAATGAAT+TGG | 0.351658 | 4.3:-88612512 | MS.gene000608:CDS |
| CCTGTAGTTCATCATTGCTT+TGG | 0.360050 | 4.3:+88611306 | None:intergenic |
| CAGGACAGTTCAGAGATTTA+CGG | 0.365740 | 4.3:-88612961 | MS.gene000608:CDS |
| TGAGGAGGTACGAAGGATAT+TGG | 0.370766 | 4.3:-88612542 | MS.gene000608:CDS |
| CGATCAAGAGAGGCAGAAAC+TGG | 0.373050 | 4.3:-88612428 | MS.gene000608:CDS |
| CCAGCCCTTAACTCTTCATA+TGG | 0.378071 | 4.3:+88613483 | None:intergenic |
| AGAAACCATATGAAGAGTTA+AGG | 0.381900 | 4.3:-88613488 | MS.gene000608:CDS |
| TCTGCTCCTTTGAGGCCAAC+TGG | 0.386894 | 4.3:+88611736 | None:intergenic |
| CCAGTGGTGGGTATACTGTT+TGG | 0.391573 | 4.3:-88610547 | MS.gene000608:CDS |
| CAGTGGTGGGTATACTGTTT+GGG | 0.392443 | 4.3:-88610546 | MS.gene000608:CDS |
| ACAAAGTGAAGAACAATAAT+GGG | 0.394132 | 4.3:-88613455 | MS.gene000608:CDS |
| GATCTGTTGCAGCATGCATC+TGG | 0.396114 | 4.3:-88613378 | MS.gene000608:CDS |
| AGCTATCTTCTGCTCCTTTG+AGG | 0.404036 | 4.3:+88611728 | None:intergenic |
| GGCTGTTCATACGTTCTTGA+TGG | 0.404762 | 4.3:-88613109 | MS.gene000608:CDS |
| TTAGTACCTCACGCTTGTTT+AGG | 0.407923 | 4.3:+88612452 | None:intergenic |
| ATAATTGTCCAGGGTCGATT+GGG | 0.410920 | 4.3:-88612915 | MS.gene000608:CDS |
| GTCAAGGTCTCCCATCCTCT+TGG | 0.419346 | 4.3:+88610929 | None:intergenic |
| CAGGCTTGTTGAAGAGCAAA+AGG | 0.422308 | 4.3:-88611691 | MS.gene000608:intron |
| CTTGTTTAGGTCTCTGCTCC+AGG | 0.422956 | 4.3:+88612465 | None:intergenic |
| TGGAAATTGAAGAACTAAAA+GGG | 0.432185 | 4.3:-88611475 | MS.gene000608:CDS |
| CAGTTCAGAGATTTACGGTT+GGG | 0.434103 | 4.3:-88612956 | MS.gene000608:CDS |
| TATAATTGTCCAGGGTCGAT+TGG | 0.446459 | 4.3:-88612916 | MS.gene000608:CDS |
| ACTTCAACAATGACTGGAAT+GGG | 0.453119 | 4.3:-88613062 | MS.gene000608:CDS |
| CTGCAAGTCATGAAACATCT+TGG | 0.454930 | 4.3:-88611449 | MS.gene000608:CDS |
| GAAACCATATGAAGAGTTAA+GGG | 0.456039 | 4.3:-88613487 | MS.gene000608:CDS |
| CAGTTTCTGCCTCTCTTGAT+CGG | 0.457451 | 4.3:+88612429 | None:intergenic |
| GAAGATGATTATAATTGTCC+AGG | 0.464276 | 4.3:-88612925 | MS.gene000608:CDS |
| TCAAAGCCGGGCGAGGTACT+TGG | 0.465289 | 4.3:+88613259 | None:intergenic |
| TAGCTGATGAGAATGTCTTC+AGG | 0.469727 | 4.3:-88611710 | MS.gene000608:CDS |
| CAACTGGAGTGATTGATTCC+TGG | 0.474236 | 4.3:+88611752 | None:intergenic |
| GGTATACTGTTTGGGAGCTG+TGG | 0.476632 | 4.3:-88610538 | MS.gene000608:CDS |
| TACAAAAGCTGAAGAAGGAA+TGG | 0.478989 | 4.3:-88610628 | MS.gene000608:CDS |
| TAATATCAATCTCATTTGCC+AGG | 0.479312 | 4.3:+88612806 | None:intergenic |
| ATCACTCCAGTTGGCCTCAA+AGG | 0.480055 | 4.3:-88611742 | MS.gene000608:CDS |
| AAAACAGAAGGCAAACCATC+TGG | 0.480375 | 4.3:-88613325 | MS.gene000608:CDS |
| CGAGCTTTGCTCTTTATGGC+AGG | 0.485391 | 4.3:-88610841 | MS.gene000608:CDS |
| TCCAAGTTGAGAACTACGTT+TGG | 0.494414 | 4.3:-88613215 | MS.gene000608:CDS |
| TTATAGACTTCAACAATGAC+TGG | 0.495035 | 4.3:-88613068 | MS.gene000608:CDS |
| ACAAAAGCTGAAGAAGGAAT+GGG | 0.498002 | 4.3:-88610627 | MS.gene000608:CDS |
| ATCTCAACAAGATGCAGTAT+AGG | 0.500867 | 4.3:-88612774 | MS.gene000608:CDS |
| TCTCTGTAACCACTTTAAAA+GGG | 0.509171 | 4.3:+88610793 | None:intergenic |
| ACTTAGGTGTCCGTATTGCT+CGG | 0.510947 | 4.3:-88613430 | MS.gene000608:CDS |
| AACTACGTTTGGCCGTGGAC+AGG | 0.513586 | 4.3:-88613204 | MS.gene000608:CDS |
| GAATTTAACGCTTATTGTCA+AGG | 0.513944 | 4.3:-88611333 | MS.gene000608:CDS |
| TAATATTGGCACCAAGAGGA+TGG | 0.524177 | 4.3:-88610940 | MS.gene000608:CDS |
| TATGTCCTTGAGTAGGATGC+TGG | 0.524242 | 4.3:-88612737 | MS.gene000608:CDS |
| CCAAACAGTATACCCACCAC+TGG | 0.525403 | 4.3:+88610547 | None:intergenic |
| CCAAAGCAATGATGAACTAC+AGG | 0.526461 | 4.3:-88611306 | MS.gene000608:CDS |
| CTTAAACAAGATCCTTCAGT+TGG | 0.526740 | 4.3:-88611531 | MS.gene000608:CDS |
| ACGTAGTTCTCAACTTGGAC+AGG | 0.526836 | 4.3:+88613219 | None:intergenic |
| GCCAAACGTAGTTCTCAACT+TGG | 0.528155 | 4.3:+88613214 | None:intergenic |
| TGAACTGTCCTGCAAGTCCA+TGG | 0.528763 | 4.3:+88612972 | None:intergenic |
| GCAAGAGATGAATTCAGAGT+TGG | 0.529926 | 4.3:-88611393 | MS.gene000608:CDS |
| AAATAGCATTGTGGAAAACC+TGG | 0.534545 | 4.3:-88612824 | MS.gene000608:CDS |
| GACTTCAACAATGACTGGAA+TGG | 0.535886 | 4.3:-88613063 | MS.gene000608:CDS |
| TCAGCCTTCCTTTGTTGCGA+AGG | 0.537542 | 4.3:+88612887 | None:intergenic |
| CTTAGGTGTCCGTATTGCTC+GGG | 0.537566 | 4.3:-88613429 | MS.gene000608:CDS |
| ATCTGGAGTAGGCAAAGGTT+CGG | 0.537904 | 4.3:-88613361 | MS.gene000608:CDS |
| GATGGGAGACCTTGACCAGA+AGG | 0.539667 | 4.3:-88610922 | MS.gene000608:CDS |
| GTTCATACGTTCTTGATGGA+TGG | 0.543612 | 4.3:-88613105 | MS.gene000608:CDS |
| AAATGAGGAAGCTTGATACC+TGG | 0.545605 | 4.3:-88612483 | MS.gene000608:CDS |
| TCCAAACTACCAGAGAGAAA+AGG | 0.547284 | 4.3:-88611561 | MS.gene000608:intron |
| TTGAGAACTACGTTTGGCCG+TGG | 0.547439 | 4.3:-88613209 | MS.gene000608:CDS |
| GAAACTACAAAAGCTGAAGA+AGG | 0.547462 | 4.3:-88610633 | MS.gene000608:CDS |
| CCATATGAAGAGTTAAGGGC+TGG | 0.547915 | 4.3:-88613483 | MS.gene000608:CDS |
| AAACAGAAGCACAAAACAGA+AGG | 0.549041 | 4.3:-88613337 | MS.gene000608:CDS |
| TGTCCTTCCAGAAAGACTCC+AGG | 0.550329 | 4.3:-88611770 | MS.gene000608:intron |
| ATGCAAGTGAGCTTGAGAAA+TGG | 0.551886 | 4.3:-88613032 | MS.gene000608:CDS |
| ACGACAGCTAAGGTCAAAGC+CGG | 0.553034 | 4.3:+88613246 | None:intergenic |
| ATTTGCTAAGTACAAACCAT+TGG | 0.554128 | 4.3:-88613130 | MS.gene000608:CDS |
| AGCAGACCAAGTACCTCGCC+CGG | 0.554305 | 4.3:-88613265 | MS.gene000608:CDS |
| ACTGGAAGAGGACAAGAAGA+AGG | 0.555312 | 4.3:-88612410 | MS.gene000608:intron |
| TGATTCTGGATACTTGCAAA+AGG | 0.555382 | 4.3:-88613154 | MS.gene000608:CDS |
| AGTTCTCAACTTGGACAGGT+TGG | 0.556864 | 4.3:+88613223 | None:intergenic |
| GCTAAGGTCAAAGCCGGGCG+AGG | 0.561717 | 4.3:+88613252 | None:intergenic |
| AGAAGTGATCACTTATATTG+TGG | 0.563683 | 4.3:-88610483 | MS.gene000608:CDS |
| TTGCAGCATGCATCTGGAGT+AGG | 0.566883 | 4.3:-88613372 | MS.gene000608:CDS |
| TAAGCGCAAGAGAGGAGGAT+AGG | 0.567186 | 4.3:-88610444 | None:intergenic |
| CAGGAATCAATCACTCCAGT+TGG | 0.571555 | 4.3:-88611751 | MS.gene000608:CDS |
| ATGATGAACTACAGGAAGCT+CGG | 0.574508 | 4.3:-88611298 | MS.gene000608:CDS |
| AGAACAATAATGGGACACTT+AGG | 0.574673 | 4.3:-88613446 | MS.gene000608:CDS |
| AGGTACTCCCCAATCGACCC+TGG | 0.579229 | 4.3:+88612907 | None:intergenic |
| AAAACTTTGCAAGAGCCAGA+TGG | 0.582131 | 4.3:+88613310 | None:intergenic |
| AACGAGTACAACCCCAGTGG+TGG | 0.585705 | 4.3:-88610560 | MS.gene000608:CDS |
| AATATTGGCACCAAGAGGAT+GGG | 0.586149 | 4.3:-88610939 | MS.gene000608:CDS |
| GACAGGTTGGACGACAGCTA+AGG | 0.586592 | 4.3:+88613236 | None:intergenic |
| AGTACCTTCGCAACAAAGGA+AGG | 0.587192 | 4.3:-88612891 | MS.gene000608:CDS |
| AGAGAGGCAGAAACTGGAAG+AGG | 0.587763 | 4.3:-88612422 | MS.gene000608:CDS |
| AAAATGTGAAGAACTCAGCT+TGG | 0.590276 | 4.3:-88610818 | MS.gene000608:CDS |
| CAAACAGTATACCCACCACT+GGG | 0.590617 | 4.3:+88610548 | None:intergenic |
| GGGGAGTACCTTCGCAACAA+AGG | 0.594476 | 4.3:-88612895 | MS.gene000608:CDS |
| CTCCTCCAGCATCCTACTCA+AGG | 0.596087 | 4.3:+88612732 | None:intergenic |
| CAACTTAAGCGCAAGAGAGG+AGG | 0.597370 | 4.3:-88610449 | MS.gene000608:CDS |
| GATCAGTGAGTCTGAGATCG+AGG | 0.600157 | 4.3:-88613520 | MS.gene000608:CDS |
| AAGCAACTTAAGCGCAAGAG+AGG | 0.605662 | 4.3:-88610452 | MS.gene000608:CDS |
| CGACAGCTAAGGTCAAAGCC+GGG | 0.609400 | 4.3:+88613247 | None:intergenic |
| CATGCATCTGGAGTAGGCAA+AGG | 0.611854 | 4.3:-88613366 | MS.gene000608:CDS |
| AGAAGACTATGTCCTTGAGT+AGG | 0.612892 | 4.3:-88612744 | MS.gene000608:CDS |
| ACAGTTCAGAGATTTACGGT+TGG | 0.615927 | 4.3:-88612957 | MS.gene000608:CDS |
| GAACTTCAAAGAAAATAGGA+AGG | 0.621964 | 4.3:-88610516 | MS.gene000608:CDS |
| AGGTACTAACCGATCAAGAG+AGG | 0.623269 | 4.3:-88612438 | MS.gene000608:CDS |
| AAGATGATTATAATTGTCCA+GGG | 0.627300 | 4.3:-88612924 | MS.gene000608:CDS |
| CATGCAGCGTAAAGCTCGTG+AGG | 0.627326 | 4.3:-88612560 | MS.gene000608:CDS |
| TTGACAAGTATGCCTGTCCA+CGG | 0.630837 | 4.3:+88613192 | None:intergenic |
| AAACTACCAGAGAGAAAAGG+AGG | 0.630982 | 4.3:-88611558 | MS.gene000608:intron |
| TAATTGTCCAGGGTCGATTG+GGG | 0.634670 | 4.3:-88612914 | MS.gene000608:CDS |
| TGGTTTGAGACTAAACGTTG+TGG | 0.637320 | 4.3:-88613012 | MS.gene000608:CDS |
| GTCCTTGAGTAGGATGCTGG+AGG | 0.639598 | 4.3:-88612734 | MS.gene000608:CDS |
| GGGTTAAATGAAATGCTGAC+TGG | 0.640070 | 4.3:-88610972 | MS.gene000608:CDS |
| TTCGCAACAAAGGAAGGCTG+AGG | 0.640972 | 4.3:-88612885 | MS.gene000608:CDS |
| AAGCTCGTGAGGAGGTACGA+AGG | 0.645630 | 4.3:-88612549 | MS.gene000608:CDS |
| AAGAACGTATGAACAGCCAA+TGG | 0.648751 | 4.3:+88613114 | None:intergenic |
| CTACCAGAGAGAAAAGGAGG+AGG | 0.652051 | 4.3:-88611555 | MS.gene000608:intron |
| TCTTGGAGATCAAGATGATG+CGG | 0.666276 | 4.3:-88611432 | MS.gene000608:CDS |
| ACGAGTACAACCCCAGTGGT+GGG | 0.666856 | 4.3:-88610559 | MS.gene000608:CDS |
| CAAAAGCTGAAGAAGGAATG+GGG | 0.672943 | 4.3:-88610626 | MS.gene000608:CDS |
| TCAAAGCAGAAATAGCATTG+TGG | 0.673917 | 4.3:-88612833 | MS.gene000608:CDS |
| AAACTAATATTGGCACCAAG+AGG | 0.676823 | 4.3:-88610944 | MS.gene000608:CDS |
| GCAGCGTAAAGCTCGTGAGG+AGG | 0.682044 | 4.3:-88612557 | MS.gene000608:CDS |
| CAGAGACCTAAACAAGCGTG+AGG | 0.704526 | 4.3:-88612458 | MS.gene000608:CDS |
| CTTGATGGATGGTAACTGCG+TGG | 0.712841 | 4.3:-88613094 | MS.gene000608:CDS |
| TACAGAGAATGATAACCATG+TGG | 0.726744 | 4.3:-88610778 | MS.gene000608:intron |
| AAACAGTATACCCACCACTG+GGG | 0.786062 | 4.3:+88610549 | None:intergenic |
| GTTAACGAGTACAACCCCAG+TGG | 0.812173 | 4.3:-88610563 | MS.gene000608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCAATGTAATATATA+TGG | - | chr4.3:88611955-88611974 | MS.gene000608:intron | 10.0% |
| !! | AAATAGTGTAATAATTAACA+TGG | - | chr4.3:88613293-88613312 | MS.gene000608:CDS | 15.0% |
| !!! | AGTAACATTTCTTTTTATAT+AGG | + | chr4.3:88612774-88612793 | None:intergenic | 15.0% |
| !!! | CAGTTAAAAATATTTGAAAT+GGG | + | chr4.3:88611644-88611663 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCTATTGTTTTA+GGG | - | chr4.3:88613001-88613020 | MS.gene000608:CDS | 15.0% |
| !!! | TTTCAAATTTCTATTGTTTT+AGG | - | chr4.3:88613000-88613019 | MS.gene000608:CDS | 15.0% |
| !! | AAATTTGAAAAAAATGAGAG+GGG | + | chr4.3:88612990-88613009 | None:intergenic | 20.0% |
| !! | AGAAATTTGAAAAAAATGAG+AGG | + | chr4.3:88612992-88613011 | None:intergenic | 20.0% |
| !! | GAAATTTGAAAAAAATGAGA+GGG | + | chr4.3:88612991-88613010 | None:intergenic | 20.0% |
| !! | GCAGTTAAAAATATTTGAAA+TGG | + | chr4.3:88611645-88611664 | None:intergenic | 20.0% |
| !!! | AAAAAAATGAGACATTTTTG+TGG | + | chr4.3:88611399-88611418 | None:intergenic | 20.0% |
| !!! | CACTTTTTTATTCAAATCAA+GGG | + | chr4.3:88611821-88611840 | None:intergenic | 20.0% |
| !!! | TCAAATTTCTATTGTTTTAG+GGG | - | chr4.3:88613002-88613021 | MS.gene000608:CDS | 20.0% |
| ! | AAAGCAGGAATTCAAATATA+AGG | - | chr4.3:88610594-88610613 | MS.gene000608:CDS | 25.0% |
| ! | AAATGAATCCCAACTTTAAT+TGG | - | chr4.3:88611869-88611888 | MS.gene000608:intron | 25.0% |
| ! | AAGATGATTATAATTGTCCA+GGG | - | chr4.3:88611070-88611089 | MS.gene000608:intron | 25.0% |
| ! | AATAGAAAGTTTGGAAGATA+TGG | - | chr4.3:88612631-88612650 | MS.gene000608:intron | 25.0% |
| ! | ACAAAGTGAAGAACAATAAT+GGG | - | chr4.3:88610539-88610558 | MS.gene000608:CDS | 25.0% |
| ! | ACATGGTAATATTGTTGTAT+TGG | - | chr4.3:88613310-88613329 | MS.gene000608:CDS | 25.0% |
| ! | AGAAAAGTTGAGTAATGAAT+TGG | - | chr4.3:88611482-88611501 | MS.gene000608:CDS | 25.0% |
| ! | ATGAATTGGATGAAAAAATG+AGG | - | chr4.3:88611496-88611515 | MS.gene000608:CDS | 25.0% |
| ! | ATGGAAATTGAAGAACTAAA+AGG | - | chr4.3:88612518-88612537 | MS.gene000608:CDS | 25.0% |
| ! | ATTTCAACTCTACATAAATG+AGG | + | chr4.3:88611995-88612014 | None:intergenic | 25.0% |
| ! | TACAAAGTGAAGAACAATAA+TGG | - | chr4.3:88610538-88610557 | MS.gene000608:CDS | 25.0% |
| ! | TGGAAATTGAAGAACTAAAA+GGG | - | chr4.3:88612519-88612538 | MS.gene000608:CDS | 25.0% |
| !! | AAAAGAAAATCTTTTCTTGC+AGG | + | chr4.3:88613110-88613129 | None:intergenic | 25.0% |
| !! | AAATCTTATTTCCTAAAGAG+AGG | + | chr4.3:88612916-88612935 | None:intergenic | 25.0% |
| !! | ATTACACTATTTCTCTATTG+AGG | + | chr4.3:88613285-88613304 | None:intergenic | 25.0% |
| !! | TTCCATTTCCAATTTTTGTT+TGG | + | chr4.3:88612504-88612523 | None:intergenic | 25.0% |
| !! | TTGCCTTATTGTATAGAATA+GGG | - | chr4.3:88611345-88611364 | MS.gene000608:CDS | 25.0% |
| !! | TTTGCCTTATTGTATAGAAT+AGG | - | chr4.3:88611344-88611363 | MS.gene000608:CDS | 25.0% |
| !!! | AAAAGCTTTTGATTATTGTG+AGG | - | chr4.3:88611932-88611951 | MS.gene000608:intron | 25.0% |
| !!! | GCACTTTTTTATTCAAATCA+AGG | + | chr4.3:88611822-88611841 | None:intergenic | 25.0% |
| AAAAAAGGATTGGAATTCCA+TGG | - | chr4.3:88611005-88611024 | MS.gene000608:intron | 30.0% | |
| ACTAGATGCCAAACAAAAAT+TGG | - | chr4.3:88612493-88612512 | MS.gene000608:CDS | 30.0% | |
| ACTGATGATTCAAAGTCTTA+AGG | + | chr4.3:88612165-88612184 | None:intergenic | 30.0% | |
| AGAAACCATATGAAGAGTTA+AGG | - | chr4.3:88610506-88610525 | MS.gene000608:CDS | 30.0% | |
| AGAAGTGATCACTTATATTG+TGG | - | chr4.3:88613511-88613530 | MS.gene000608:CDS | 30.0% | |
| ATAAGCAAATCACATGATTC+TGG | - | chr4.3:88610826-88610845 | MS.gene000608:CDS | 30.0% | |
| GAAACCATATGAAGAGTTAA+GGG | - | chr4.3:88610507-88610526 | MS.gene000608:CDS | 30.0% | |
| GAACTTCAAAGAAAATAGGA+AGG | - | chr4.3:88613478-88613497 | MS.gene000608:CDS | 30.0% | |
| GAAGATGATTATAATTGTCC+AGG | - | chr4.3:88611069-88611088 | MS.gene000608:intron | 30.0% | |
| GAATTTAACGCTTATTGTCA+AGG | - | chr4.3:88612661-88612680 | MS.gene000608:intron | 30.0% | |
| GATTTGAATAACAATGTCCT+TGG | - | chr4.3:88611792-88611811 | MS.gene000608:intron | 30.0% | |
| GGAAGACAAAATAGAAAGTT+TGG | - | chr4.3:88612622-88612641 | MS.gene000608:intron | 30.0% | |
| TAATATCAATCTCATTTGCC+AGG | + | chr4.3:88611191-88611210 | None:intergenic | 30.0% | |
| TGAAGAATACACGAAGATAA+AGG | + | chr4.3:88612819-88612838 | None:intergenic | 30.0% | |
| TGCCAAACAAAAATTGGAAA+TGG | - | chr4.3:88612499-88612518 | MS.gene000608:CDS | 30.0% | |
| TGTGGAACTTCAAAGAAAAT+AGG | - | chr4.3:88613474-88613493 | MS.gene000608:CDS | 30.0% | |
| TTATAGACTTCAACAATGAC+TGG | - | chr4.3:88610926-88610945 | MS.gene000608:CDS | 30.0% | |
| TTCAAGATAACCAACTAACA+AGG | - | chr4.3:88612835-88612854 | MS.gene000608:CDS | 30.0% | |
| TTCATTTAAAGAGAGTCAGT+AGG | + | chr4.3:88611856-88611875 | None:intergenic | 30.0% | |
| TTCCCCTATTCTATACAATA+AGG | + | chr4.3:88611351-88611370 | None:intergenic | 30.0% | |
| TTCTCTGTAACCACTTTAAA+AGG | + | chr4.3:88613205-88613224 | None:intergenic | 30.0% | |
| ! | AGATTTTCTTTTGATGAAGC+TGG | - | chr4.3:88613118-88613137 | MS.gene000608:CDS | 30.0% |
| ! | ATTTGCTAAGTACAAACCAT+TGG | - | chr4.3:88610864-88610883 | MS.gene000608:CDS | 30.0% |
| ! | GATTTTCTTTTGATGAAGCT+GGG | - | chr4.3:88613119-88613138 | MS.gene000608:CDS | 30.0% |
| ! | GCATTTTATATATTAGTGCG+TGG | - | chr4.3:88612044-88612063 | MS.gene000608:intron | 30.0% |
| ! | GTACTCGTTAACTTCTTTTA+AGG | + | chr4.3:88613423-88613442 | None:intergenic | 30.0% |
| ! | TCTCTGTAACCACTTTAAAA+GGG | + | chr4.3:88613204-88613223 | None:intergenic | 30.0% |
| ! | TGCCTTATTGTATAGAATAG+GGG | - | chr4.3:88611346-88611365 | MS.gene000608:CDS | 30.0% |
| ! | TTTTCATAACCAAGTGAGTA+GGG | + | chr4.3:88612333-88612352 | None:intergenic | 30.0% |
| !!! | AGCACATCTGGTTTTTTTTA+TGG | + | chr4.3:88612102-88612121 | None:intergenic | 30.0% |
| !!! | CAAATTTTTTGCAAGGACAA+TGG | + | chr4.3:88611695-88611714 | None:intergenic | 30.0% |
| !!! | GACAGATCAAATTTTTTGCA+AGG | + | chr4.3:88611702-88611721 | None:intergenic | 30.0% |
| !!! | TCATTTTTTTGTCAGAGTCA+AGG | - | chr4.3:88611409-88611428 | MS.gene000608:CDS | 30.0% |
| AAAATGTGAAGAACTCAGCT+TGG | - | chr4.3:88613176-88613195 | MS.gene000608:CDS | 35.0% | |
| AAACTAATATTGGCACCAAG+AGG | - | chr4.3:88613050-88613069 | MS.gene000608:CDS | 35.0% | |
| AAATAGCATTGTGGAAAACC+TGG | - | chr4.3:88611170-88611189 | MS.gene000608:intron | 35.0% | |
| AACGTTGTGGAAAAAAGGAT+TGG | - | chr4.3:88610995-88611014 | MS.gene000608:intron | 35.0% | |
| AATCTATGCACCTTGTTAGT+TGG | + | chr4.3:88612848-88612867 | None:intergenic | 35.0% | |
| ACAAAAGCTGAAGAAGGAAT+GGG | - | chr4.3:88613367-88613386 | MS.gene000608:CDS | 35.0% | |
| ACACGAAGATAAAGGTTAGA+AGG | + | chr4.3:88612811-88612830 | None:intergenic | 35.0% | |
| ACTTCAACAATGACTGGAAT+GGG | - | chr4.3:88610932-88610951 | MS.gene000608:CDS | 35.0% | |
| AGCATGTAAAGGTTAGAAAG+TGG | + | chr4.3:88612135-88612154 | None:intergenic | 35.0% | |
| ATCTCAACAAGATGCAGTAT+AGG | - | chr4.3:88611220-88611239 | MS.gene000608:intron | 35.0% | |
| ATTTGATCTGTCTTTCTCTG+TGG | - | chr4.3:88611710-88611729 | MS.gene000608:CDS | 35.0% | |
| CTTAAACAAGATCCTTCAGT+TGG | - | chr4.3:88612463-88612482 | MS.gene000608:CDS | 35.0% | |
| GAAACTACAAAAGCTGAAGA+AGG | - | chr4.3:88613361-88613380 | MS.gene000608:CDS | 35.0% | |
| GACTAAACGTTGTGGAAAAA+AGG | - | chr4.3:88610990-88611009 | MS.gene000608:intron | 35.0% | |
| GATCAACCAAGAACATTAGT+AGG | + | chr4.3:88611739-88611758 | None:intergenic | 35.0% | |
| GATTTGACTAACAATGTCGT+TGG | - | chr4.3:88611761-88611780 | MS.gene000608:CDS | 35.0% | |
| GCATGTAAAGGTTAGAAAGT+GGG | + | chr4.3:88612134-88612153 | None:intergenic | 35.0% | |
| GTTCTGCTGTGAATATATTG+TGG | - | chr4.3:88612949-88612968 | MS.gene000608:CDS | 35.0% | |
| TACAAAAGCTGAAGAAGGAA+TGG | - | chr4.3:88613366-88613385 | MS.gene000608:CDS | 35.0% | |
| TACAGAGAATGATAACCATG+TGG | - | chr4.3:88613216-88613235 | MS.gene000608:CDS | 35.0% | |
| TCAAAGCAGAAATAGCATTG+TGG | - | chr4.3:88611161-88611180 | MS.gene000608:intron | 35.0% | |
| TCAGTTGAAGACATTCACAA+TGG | + | chr4.3:88612405-88612424 | None:intergenic | 35.0% | |
| TGATTCTGGATACTTGCAAA+AGG | - | chr4.3:88610840-88610859 | MS.gene000608:CDS | 35.0% | |
| TTCTAACCTTTACATGCTTG+AGG | - | chr4.3:88612137-88612156 | MS.gene000608:intron | 35.0% | |
| TTGAAGACATTCACAATGGA+TGG | + | chr4.3:88612401-88612420 | None:intergenic | 35.0% | |
| ! | AAACAGAAGCACAAAACAGA+AGG | - | chr4.3:88610657-88610676 | MS.gene000608:CDS | 35.0% |
| ! | ACTGGTGCCAAAACTAATAT+TGG | - | chr4.3:88613040-88613059 | MS.gene000608:CDS | 35.0% |
| ! | AGAACAATAATGGGACACTT+AGG | - | chr4.3:88610548-88610567 | MS.gene000608:CDS | 35.0% |
| ! | AGCTTTTAGCATATAGACTC+TGG | + | chr4.3:88611919-88611938 | None:intergenic | 35.0% |
| ! | CAACTGAAGGATCTTGTTTA+AGG | + | chr4.3:88612465-88612484 | None:intergenic | 35.0% |
| ! | CTTCACAATGCTTTTGTTGA+AGG | - | chr4.3:88611294-88611313 | MS.gene000608:CDS | 35.0% |
| ! | CTTTTCATAACCAAGTGAGT+AGG | + | chr4.3:88612334-88612353 | None:intergenic | 35.0% |
| ! | GCTTTTAGCATATAGACTCT+GGG | + | chr4.3:88611918-88611937 | None:intergenic | 35.0% |
| ! | TCTTATTTCCTAAAGAGAGG+TGG | + | chr4.3:88612913-88612932 | None:intergenic | 35.0% |
| ! | TTTTGATGAAGCTGGGATAA+AGG | - | chr4.3:88613126-88613145 | MS.gene000608:CDS | 35.0% |
| ! | TTTTTCTTTCCCGAGCAATA+CGG | + | chr4.3:88610577-88610596 | None:intergenic | 35.0% |
| !!! | CTTGGTGCCAATATTAGTTT+TGG | + | chr4.3:88613050-88613069 | None:intergenic | 35.0% |
| AAAACAGAAGGCAAACCATC+TGG | - | chr4.3:88610669-88610688 | MS.gene000608:intron | 40.0% | |
| AAAACTTTGCAAGAGCCAGA+TGG | + | chr4.3:88610687-88610706 | None:intergenic | 40.0% | |
| AAACTACCAGAGAGAAAAGG+AGG | - | chr4.3:88612436-88612455 | MS.gene000608:CDS | 40.0% | |
| AAATGAGGAAGCTTGATACC+TGG | - | chr4.3:88611511-88611530 | MS.gene000608:CDS | 40.0% | |
| AAGAACGTATGAACAGCCAA+TGG | + | chr4.3:88610883-88610902 | None:intergenic | 40.0% | |
| AATATTGGCACCAAGAGGAT+GGG | - | chr4.3:88613055-88613074 | MS.gene000608:CDS | 40.0% | |
| ACAGTTCAGAGATTTACGGT+TGG | - | chr4.3:88611037-88611056 | MS.gene000608:intron | 40.0% | |
| AGAAGACTATGTCCTTGAGT+AGG | - | chr4.3:88611250-88611269 | MS.gene000608:intron | 40.0% | |
| AGGCATTCACAAAAACCTTC+TGG | + | chr4.3:88613090-88613109 | None:intergenic | 40.0% | |
| ATAATTGTCCAGGGTCGATT+GGG | - | chr4.3:88611079-88611098 | MS.gene000608:intron | 40.0% | |
| ATGATGAACTACAGGAAGCT+CGG | - | chr4.3:88612696-88612715 | MS.gene000608:intron | 40.0% | |
| ATGCAAGTGAGCTTGAGAAA+TGG | - | chr4.3:88610962-88610981 | MS.gene000608:CDS | 40.0% | |
| ATTCAAATCAAGGGCAACCA+AGG | + | chr4.3:88611812-88611831 | None:intergenic | 40.0% | |
| CAAAAGCTGAAGAAGGAATG+GGG | - | chr4.3:88613368-88613387 | MS.gene000608:CDS | 40.0% | |
| CAGGACAGTTCAGAGATTTA+CGG | - | chr4.3:88611033-88611052 | MS.gene000608:intron | 40.0% | |
| CAGTTCAGAGATTTACGGTT+GGG | - | chr4.3:88611038-88611057 | MS.gene000608:intron | 40.0% | |
| CCAAAGCAATGATGAACTAC+AGG | - | chr4.3:88612688-88612707 | MS.gene000608:intron | 40.0% | |
| CCTGTAGTTCATCATTGCTT+TGG | + | chr4.3:88612691-88612710 | None:intergenic | 40.0% | |
| CTGCAAGTCATGAAACATCT+TGG | - | chr4.3:88612545-88612564 | MS.gene000608:CDS | 40.0% | |
| GACTTCAACAATGACTGGAA+TGG | - | chr4.3:88610931-88610950 | MS.gene000608:CDS | 40.0% | |
| GATTATCTCCACCTCTCTTT+AGG | - | chr4.3:88612902-88612921 | MS.gene000608:CDS | 40.0% | |
| GCAAGAGATGAATTCAGAGT+TGG | - | chr4.3:88612601-88612620 | MS.gene000608:intron | 40.0% | |
| GCTTTATGGTACATACCACA+TGG | + | chr4.3:88613234-88613253 | None:intergenic | 40.0% | |
| GGGGAAAAAAACACTTGCAT+TGG | - | chr4.3:88611365-88611384 | MS.gene000608:CDS | 40.0% | |
| GGGTTAAATGAAATGCTGAC+TGG | - | chr4.3:88613022-88613041 | MS.gene000608:CDS | 40.0% | |
| GTGAATGTCTTCAACTGATG+TGG | - | chr4.3:88612407-88612426 | MS.gene000608:intron | 40.0% | |
| GTGGAAGGCCAATTAAAGTT+GGG | + | chr4.3:88611880-88611899 | None:intergenic | 40.0% | |
| GTTCATACGTTCTTGATGGA+TGG | - | chr4.3:88610889-88610908 | MS.gene000608:CDS | 40.0% | |
| TAATATTGGCACCAAGAGGA+TGG | - | chr4.3:88613054-88613073 | MS.gene000608:CDS | 40.0% | |
| TACGCAAAAAACACAGAGCA+TGG | + | chr4.3:88613256-88613275 | None:intergenic | 40.0% | |
| TAGCTGATGAGAATGTCTTC+AGG | - | chr4.3:88612284-88612303 | MS.gene000608:intron | 40.0% | |
| TATAATTGTCCAGGGTCGAT+TGG | - | chr4.3:88611078-88611097 | MS.gene000608:intron | 40.0% | |
| TCACAAAAACCTTCTGGTCA+AGG | + | chr4.3:88613084-88613103 | None:intergenic | 40.0% | |
| TCCAAACTACCAGAGAGAAA+AGG | - | chr4.3:88612433-88612452 | MS.gene000608:CDS | 40.0% | |
| TCTTGGAGATCAAGATGATG+CGG | - | chr4.3:88612562-88612581 | MS.gene000608:CDS | 40.0% | |
| TGGTCTCCTACTAATGTTCT+TGG | - | chr4.3:88611730-88611749 | MS.gene000608:CDS | 40.0% | |
| TGTGGAAGGCCAATTAAAGT+TGG | + | chr4.3:88611881-88611900 | None:intergenic | 40.0% | |
| TTAGTACCTCACGCTTGTTT+AGG | + | chr4.3:88611545-88611564 | None:intergenic | 40.0% | |
| ! | AAACACAGAGCATGGCTTTA+TGG | + | chr4.3:88613248-88613267 | None:intergenic | 40.0% |
| ! | ATTGATTCCTGGAGTCTTTC+TGG | + | chr4.3:88612234-88612253 | None:intergenic | 40.0% |
| ! | TCCAAGTTGAGAACTACGTT+TGG | - | chr4.3:88610779-88610798 | MS.gene000608:CDS | 40.0% |
| ! | TCCTTTTCTCTCTGGTAGTT+TGG | + | chr4.3:88612437-88612456 | None:intergenic | 40.0% |
| ! | TGGCTCTTGCAAAGTTTTTG+AGG | - | chr4.3:88610689-88610708 | MS.gene000608:intron | 40.0% |
| ! | TGGTTTGAGACTAAACGTTG+TGG | - | chr4.3:88610982-88611001 | MS.gene000608:intron | 40.0% |
| !! | TAGACTCTGGGACAAATTAG+CGG | + | chr4.3:88611906-88611925 | None:intergenic | 40.0% |
| !!! | CTAGTTGCTTTTCCAACTGA+AGG | + | chr4.3:88612478-88612497 | None:intergenic | 40.0% |
| AAACAGTATACCCACCACTG+GGG | + | chr4.3:88613448-88613467 | None:intergenic | 45.0% | |
| AAAGGTTTGCCCTACTCACT+TGG | - | chr4.3:88612321-88612340 | MS.gene000608:intron | 45.0% | |
| AAGCAACTTAAGCGCAAGAG+AGG | - | chr4.3:88613542-88613561 | MS.gene000608:CDS | 45.0% | |
| AAGGCTCCTCAAGCATGTAA+AGG | + | chr4.3:88612146-88612165 | None:intergenic | 45.0% | |
| ACGTAGTTCTCAACTTGGAC+AGG | + | chr4.3:88610778-88610797 | None:intergenic | 45.0% | |
| ACTGGAAGAGGACAAGAAGA+AGG | - | chr4.3:88611584-88611603 | MS.gene000608:intron | 45.0% | |
| ACTTAGGTGTCCGTATTGCT+CGG | - | chr4.3:88610564-88610583 | MS.gene000608:CDS | 45.0% | |
| AGCTATCTTCTGCTCCTTTG+AGG | + | chr4.3:88612269-88612288 | None:intergenic | 45.0% | |
| AGGTACTAACCGATCAAGAG+AGG | - | chr4.3:88611556-88611575 | MS.gene000608:intron | 45.0% | |
| AGTACCTTCGCAACAAAGGA+AGG | - | chr4.3:88611103-88611122 | MS.gene000608:intron | 45.0% | |
| AGTTCTCAACTTGGACAGGT+TGG | + | chr4.3:88610774-88610793 | None:intergenic | 45.0% | |
| ATTCCTGGAGTCTTTCTGGA+AGG | + | chr4.3:88612230-88612249 | None:intergenic | 45.0% | |
| CAAACAGTATACCCACCACT+GGG | + | chr4.3:88613449-88613468 | None:intergenic | 45.0% | |
| CAGGAATCAATCACTCCAGT+TGG | - | chr4.3:88612243-88612262 | MS.gene000608:intron | 45.0% | |
| CAGTTTCTGCCTCTCTTGAT+CGG | + | chr4.3:88611568-88611587 | None:intergenic | 45.0% | |
| CCAGCCCTTAACTCTTCATA+TGG | + | chr4.3:88610514-88610533 | None:intergenic | 45.0% | |
| CCATATGAAGAGTTAAGGGC+TGG | - | chr4.3:88610511-88610530 | MS.gene000608:CDS | 45.0% | |
| CTGTCGAGCTTTGCTCTTTA+TGG | - | chr4.3:88613149-88613168 | MS.gene000608:CDS | 45.0% | |
| GCCAAACGTAGTTCTCAACT+TGG | + | chr4.3:88610783-88610802 | None:intergenic | 45.0% | |
| GGCTGTTCATACGTTCTTGA+TGG | - | chr4.3:88610885-88610904 | MS.gene000608:CDS | 45.0% | |
| GGTGGAGATAATCTTCATGC+AGG | + | chr4.3:88612895-88612914 | None:intergenic | 45.0% | |
| TAATTGTCCAGGGTCGATTG+GGG | - | chr4.3:88611080-88611099 | MS.gene000608:intron | 45.0% | |
| TATGTCCTTGAGTAGGATGC+TGG | - | chr4.3:88611257-88611276 | MS.gene000608:intron | 45.0% | |
| TTGACAAGTATGCCTGTCCA+CGG | + | chr4.3:88610805-88610824 | None:intergenic | 45.0% | |
| TTGCTCGGGAAAGAAAAAGC+AGG | - | chr4.3:88610579-88610598 | MS.gene000608:CDS | 45.0% | |
| TTGGAATTCCATGGACTTGC+AGG | - | chr4.3:88611014-88611033 | MS.gene000608:intron | 45.0% | |
| ! | ATCTGGAGTAGGCAAAGGTT+CGG | - | chr4.3:88610633-88610652 | MS.gene000608:CDS | 45.0% |
| ! | CAACTGGAGTGATTGATTCC+TGG | + | chr4.3:88612245-88612264 | None:intergenic | 45.0% |
| ! | GGGATATCAGAAAGCACATC+TGG | + | chr4.3:88612114-88612133 | None:intergenic | 45.0% |
| ! | TGAGGAGGTACGAAGGATAT+TGG | - | chr4.3:88611452-88611471 | MS.gene000608:CDS | 45.0% |
| !! | AGACTCTGGGACAAATTAGC+GGG | + | chr4.3:88611905-88611924 | None:intergenic | 45.0% |
| !! | AGCTTGGCACCCTTTTAAAG+TGG | - | chr4.3:88613192-88613211 | MS.gene000608:CDS | 45.0% |
| !! | CAGGCTTGTTGAAGAGCAAA+AGG | - | chr4.3:88612303-88612322 | MS.gene000608:intron | 45.0% |
| !! | CAGTGGTGGGTATACTGTTT+GGG | - | chr4.3:88613448-88613467 | MS.gene000608:CDS | 45.0% |
| ACGACAGCTAAGGTCAAAGC+CGG | + | chr4.3:88610751-88610770 | None:intergenic | 50.0% | |
| AGAGAGGCAGAAACTGGAAG+AGG | - | chr4.3:88611572-88611591 | MS.gene000608:intron | 50.0% | |
| CAACTTAAGCGCAAGAGAGG+AGG | - | chr4.3:88613545-88613564 | MS.gene000608:CDS | 50.0% | |
| CAGAGACCTAAACAAGCGTG+AGG | - | chr4.3:88611536-88611555 | MS.gene000608:CDS | 50.0% | |
| CCAAACAGTATACCCACCAC+TGG | + | chr4.3:88613450-88613469 | None:intergenic | 50.0% | |
| CGAGCTTTGCTCTTTATGGC+AGG | - | chr4.3:88613153-88613172 | MS.gene000608:CDS | 50.0% | |
| CGATCAAGAGAGGCAGAAAC+TGG | - | chr4.3:88611566-88611585 | MS.gene000608:intron | 50.0% | |
| CTACCAGAGAGAAAAGGAGG+AGG | - | chr4.3:88612439-88612458 | MS.gene000608:CDS | 50.0% | |
| CTTAGGTGTCCGTATTGCTC+GGG | - | chr4.3:88610565-88610584 | MS.gene000608:CDS | 50.0% | |
| CTTGTTTAGGTCTCTGCTCC+AGG | + | chr4.3:88611532-88611551 | None:intergenic | 50.0% | |
| GATCTGTTGCAGCATGCATC+TGG | - | chr4.3:88610616-88610635 | MS.gene000608:CDS | 50.0% | |
| GGTATACTGTTTGGGAGCTG+TGG | - | chr4.3:88613456-88613475 | MS.gene000608:CDS | 50.0% | |
| GTTAACGAGTACAACCCCAG+TGG | - | chr4.3:88613431-88613450 | MS.gene000608:CDS | 50.0% | |
| TCAGCCTTCCTTTGTTGCGA+AGG | + | chr4.3:88611110-88611129 | None:intergenic | 50.0% | |
| TGAACTGTCCTGCAAGTCCA+TGG | + | chr4.3:88611025-88611044 | None:intergenic | 50.0% | |
| TGTCCTTCCAGAAAGACTCC+AGG | - | chr4.3:88612224-88612243 | MS.gene000608:intron | 50.0% | |
| TTCGCAACAAAGGAAGGCTG+AGG | - | chr4.3:88611109-88611128 | MS.gene000608:intron | 50.0% | |
| TTGAGAACTACGTTTGGCCG+TGG | - | chr4.3:88610785-88610804 | MS.gene000608:CDS | 50.0% | |
| ! | ATCACTCCAGTTGGCCTCAA+AGG | - | chr4.3:88612252-88612271 | MS.gene000608:intron | 50.0% |
| ! | CATGCATCTGGAGTAGGCAA+AGG | - | chr4.3:88610628-88610647 | MS.gene000608:CDS | 50.0% |
| ! | CTTGATGGATGGTAACTGCG+TGG | - | chr4.3:88610900-88610919 | MS.gene000608:CDS | 50.0% |
| ! | GATCAGTGAGTCTGAGATCG+AGG | - | chr4.3:88610474-88610493 | MS.gene000608:CDS | 50.0% |
| ! | TTGCAGCATGCATCTGGAGT+AGG | - | chr4.3:88610622-88610641 | MS.gene000608:CDS | 50.0% |
| !! | ACAAATTAGCGGGCTGTGGA+AGG | + | chr4.3:88611895-88611914 | None:intergenic | 50.0% |
| !! | CCAGTGGTGGGTATACTGTT+TGG | - | chr4.3:88613447-88613466 | MS.gene000608:CDS | 50.0% |
| AACGAGTACAACCCCAGTGG+TGG | - | chr4.3:88613434-88613453 | MS.gene000608:CDS | 55.0% | |
| AACTACGTTTGGCCGTGGAC+AGG | - | chr4.3:88610790-88610809 | MS.gene000608:CDS | 55.0% | |
| ACGAGTACAACCCCAGTGGT+GGG | - | chr4.3:88613435-88613454 | MS.gene000608:CDS | 55.0% | |
| CATGCAGCGTAAAGCTCGTG+AGG | - | chr4.3:88611434-88611453 | MS.gene000608:CDS | 55.0% | |
| CGACAGCTAAGGTCAAAGCC+GGG | + | chr4.3:88610750-88610769 | None:intergenic | 55.0% | |
| CTCCTCCAGCATCCTACTCA+AGG | + | chr4.3:88611265-88611284 | None:intergenic | 55.0% | |
| GATGGGAGACCTTGACCAGA+AGG | - | chr4.3:88613072-88613091 | MS.gene000608:CDS | 55.0% | |
| GTCAAGGTCTCCCATCCTCT+TGG | + | chr4.3:88613068-88613087 | None:intergenic | 55.0% | |
| GTCCTTGAGTAGGATGCTGG+AGG | - | chr4.3:88611260-88611279 | MS.gene000608:intron | 55.0% | |
| ! | AAGCTCGTGAGGAGGTACGA+AGG | - | chr4.3:88611445-88611464 | MS.gene000608:CDS | 55.0% |
| ! | AGGCCTCCTCCTTTTCTCTC+TGG | + | chr4.3:88612445-88612464 | None:intergenic | 55.0% |
| ! | GACAGGTTGGACGACAGCTA+AGG | + | chr4.3:88610761-88610780 | None:intergenic | 55.0% |
| !! | GGGGAGTACCTTCGCAACAA+AGG | - | chr4.3:88611099-88611118 | MS.gene000608:intron | 55.0% |
| !! | TCTGCTCCTTTGAGGCCAAC+TGG | + | chr4.3:88612261-88612280 | None:intergenic | 55.0% |
| !! | TGGGACAAATTAGCGGGCTG+TGG | + | chr4.3:88611899-88611918 | None:intergenic | 55.0% |
| AGCAGACCAAGTACCTCGCC+CGG | - | chr4.3:88610729-88610748 | MS.gene000608:intron | 60.0% | |
| AGGTACTCCCCAATCGACCC+TGG | + | chr4.3:88611090-88611109 | None:intergenic | 60.0% | |
| GCAGCGTAAAGCTCGTGAGG+AGG | - | chr4.3:88611437-88611456 | MS.gene000608:CDS | 60.0% | |
| ! | TCAAAGCCGGGCGAGGTACT+TGG | + | chr4.3:88610738-88610757 | None:intergenic | 60.0% |
| GCTAAGGTCAAAGCCGGGCG+AGG | + | chr4.3:88610745-88610764 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 88610445 | 88613571 | 88610445 | ID=MS.gene000608 |
| chr4.3 | mRNA | 88610445 | 88613571 | 88610445 | ID=MS.gene000608.t1;Parent=MS.gene000608 |
| chr4.3 | exon | 88612701 | 88613571 | 88612701 | ID=MS.gene000608.t1.exon1;Parent=MS.gene000608.t1 |
| chr4.3 | CDS | 88612701 | 88613571 | 88612701 | ID=cds.MS.gene000608.t1;Parent=MS.gene000608.t1 |
| chr4.3 | exon | 88612411 | 88612592 | 88612411 | ID=MS.gene000608.t1.exon2;Parent=MS.gene000608.t1 |
| chr4.3 | CDS | 88612411 | 88612592 | 88612411 | ID=cds.MS.gene000608.t1;Parent=MS.gene000608.t1 |
| chr4.3 | exon | 88611692 | 88611781 | 88611692 | ID=MS.gene000608.t1.exon3;Parent=MS.gene000608.t1 |
| chr4.3 | CDS | 88611692 | 88611781 | 88611692 | ID=cds.MS.gene000608.t1;Parent=MS.gene000608.t1 |
| chr4.3 | exon | 88611283 | 88611570 | 88611283 | ID=MS.gene000608.t1.exon4;Parent=MS.gene000608.t1 |
| chr4.3 | CDS | 88611283 | 88611570 | 88611283 | ID=cds.MS.gene000608.t1;Parent=MS.gene000608.t1 |
| chr4.3 | exon | 88610779 | 88610994 | 88610779 | ID=MS.gene000608.t1.exon5;Parent=MS.gene000608.t1 |
| chr4.3 | CDS | 88610779 | 88610994 | 88610779 | ID=cds.MS.gene000608.t1;Parent=MS.gene000608.t1 |
| chr4.3 | exon | 88610445 | 88610678 | 88610445 | ID=MS.gene000608.t1.exon6;Parent=MS.gene000608.t1 |
| chr4.3 | CDS | 88610445 | 88610678 | 88610445 | ID=cds.MS.gene000608.t1;Parent=MS.gene000608.t1 |
| Gene Sequence |
| Protein sequence |
