Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012589.t1 | XP_024638822.1 | 96.7 | 629 | 21 | 0 | 1 | 629 | 1 | 629 | 5.2e-310 | 1073.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012589.t1 | Q9S9P3 | 56.0 | 634 | 265 | 7 | 5 | 628 | 4 | 633 | 4.3e-171 | 602.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012589.t1 | A0A396IH54 | 96.7 | 629 | 21 | 0 | 1 | 629 | 1 | 629 | 3.7e-310 | 1073.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012589 | MS.gene035571 | PPI |
| MS.gene012589 | MS.gene91547 | PPI |
| MS.gene012589 | MS.gene044806 | PPI |
| MS.gene042281 | MS.gene012589 | PPI |
| MS.gene012587 | MS.gene012589 | PPI |
| MS.gene012589 | MS.gene73119 | PPI |
| MS.gene042282 | MS.gene012589 | PPI |
| MS.gene005189 | MS.gene012589 | PPI |
| MS.gene035570 | MS.gene012589 | PPI |
| MS.gene012589 | MS.gene86666 | PPI |
| MS.gene012589 | MS.gene012586 | PPI |
| MS.gene053226 | MS.gene012589 | PPI |
| MS.gene064542 | MS.gene012589 | PPI |
| MS.gene012589 | MS.gene000608 | PPI |
| MS.gene012589 | MS.gene042280 | PPI |
| MS.gene62095 | MS.gene012589 | PPI |
| MS.gene012490 | MS.gene012589 | PPI |
| MS.gene012589 | MS.gene52620 | PPI |
| MS.gene012589 | MS.gene035629 | PPI |
| MS.gene001928 | MS.gene012589 | PPI |
| MS.gene88066 | MS.gene012589 | PPI |
| MS.gene034251 | MS.gene012589 | PPI |
| MS.gene44056 | MS.gene012589 | PPI |
| MS.gene40741 | MS.gene012589 | PPI |
| MS.gene035805 | MS.gene012589 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012589.t1 | MTR_4g131350 | 98.410 | 629 | 10 | 0 | 1 | 629 | 54 | 682 | 0.0 | 1272 |
| MS.gene012589.t1 | MTR_4g125920 | 96.979 | 629 | 19 | 0 | 1 | 629 | 1 | 629 | 0.0 | 1250 |
| MS.gene012589.t1 | MTR_4g006760 | 86.020 | 608 | 81 | 4 | 22 | 629 | 22 | 625 | 0.0 | 1029 |
| MS.gene012589.t1 | MTR_4g131310 | 81.416 | 452 | 40 | 4 | 1 | 448 | 1 | 412 | 0.0 | 665 |
| MS.gene012589.t1 | MTR_4g131310 | 98.551 | 69 | 1 | 0 | 553 | 621 | 389 | 457 | 2.24e-36 | 142 |
| MS.gene012589.t1 | MTR_3g067815 | 42.924 | 643 | 344 | 9 | 1 | 626 | 1 | 637 | 7.64e-169 | 496 |
| MS.gene012589.t1 | MTR_5g079940 | 40.701 | 656 | 351 | 13 | 5 | 629 | 472 | 1120 | 1.16e-146 | 453 |
| MS.gene012589.t1 | MTR_5g079940 | 35.616 | 146 | 81 | 5 | 1 | 144 | 1 | 135 | 4.77e-16 | 82.8 |
| MS.gene012589.t1 | MTR_5g079940 | 41.346 | 104 | 51 | 4 | 1 | 103 | 117 | 211 | 4.37e-15 | 79.7 |
| MS.gene012589.t1 | MTR_5g079940 | 39.535 | 86 | 47 | 2 | 19 | 103 | 247 | 328 | 1.65e-13 | 74.7 |
| MS.gene012589.t1 | MTR_5g079940 | 37.255 | 102 | 60 | 3 | 4 | 101 | 352 | 453 | 6.65e-11 | 66.2 |
| MS.gene012589.t1 | MTR_2g097020 | 35.777 | 682 | 348 | 17 | 13 | 629 | 10 | 666 | 2.75e-108 | 341 |
| MS.gene012589.t1 | MTR_2g097010 | 36.527 | 668 | 345 | 16 | 26 | 628 | 23 | 676 | 5.83e-100 | 319 |
| MS.gene012589.t1 | MTR_4g046643 | 36.817 | 641 | 340 | 17 | 26 | 612 | 23 | 652 | 9.07e-100 | 320 |
| MS.gene012589.t1 | MTR_2g095400 | 36.128 | 656 | 349 | 20 | 13 | 628 | 10 | 635 | 6.56e-88 | 286 |
| MS.gene012589.t1 | MTR_4g126200 | 44.361 | 266 | 111 | 6 | 383 | 628 | 3 | 251 | 1.80e-59 | 200 |
| MS.gene012589.t1 | MTR_2g097000 | 38.583 | 381 | 191 | 9 | 268 | 618 | 10 | 377 | 2.04e-56 | 196 |
| MS.gene012589.t1 | MTR_3g067855 | 48.182 | 220 | 110 | 3 | 410 | 629 | 123 | 338 | 1.46e-54 | 190 |
| MS.gene012589.t1 | MTR_3g067845 | 40.711 | 253 | 144 | 4 | 378 | 629 | 4 | 251 | 1.37e-45 | 163 |
| MS.gene012589.t1 | MTR_3g067825 | 46.939 | 98 | 46 | 2 | 537 | 629 | 7 | 103 | 5.50e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012589.t1 | AT1G15910 | 56.361 | 621 | 257 | 7 | 18 | 628 | 17 | 633 | 0.0 | 682 |
| MS.gene012589.t1 | AT4G00380 | 55.323 | 620 | 264 | 6 | 19 | 628 | 18 | 634 | 0.0 | 664 |
| MS.gene012589.t1 | AT4G00380 | 55.323 | 620 | 264 | 6 | 19 | 628 | 18 | 634 | 0.0 | 664 |
| MS.gene012589.t1 | AT4G00380 | 52.181 | 619 | 257 | 6 | 19 | 628 | 18 | 606 | 0.0 | 617 |
| MS.gene012589.t1 | AT1G80790 | 53.140 | 621 | 276 | 7 | 19 | 629 | 19 | 634 | 0.0 | 607 |
| MS.gene012589.t1 | AT1G80790 | 53.140 | 621 | 276 | 7 | 19 | 629 | 19 | 634 | 0.0 | 607 |
| MS.gene012589.t1 | AT3G48670 | 40.630 | 635 | 346 | 10 | 16 | 629 | 21 | 645 | 1.71e-149 | 447 |
| MS.gene012589.t1 | AT3G48670 | 40.630 | 635 | 346 | 10 | 16 | 629 | 21 | 645 | 1.71e-149 | 447 |
| MS.gene012589.t1 | AT3G48670 | 40.630 | 635 | 346 | 10 | 16 | 629 | 21 | 645 | 1.71e-149 | 447 |
| MS.gene012589.t1 | AT1G80790 | 51.876 | 453 | 205 | 6 | 19 | 461 | 19 | 468 | 1.78e-148 | 438 |
| MS.gene012589.t1 | AT3G12550 | 36.364 | 638 | 369 | 12 | 16 | 625 | 5 | 633 | 4.76e-117 | 363 |
| MS.gene012589.t1 | AT3G12550 | 36.207 | 638 | 371 | 11 | 16 | 625 | 5 | 634 | 5.45e-117 | 363 |
| MS.gene012589.t1 | AT3G12550 | 36.207 | 638 | 371 | 11 | 16 | 625 | 5 | 634 | 5.45e-117 | 363 |
| MS.gene012589.t1 | AT3G12550 | 36.207 | 638 | 371 | 11 | 16 | 625 | 5 | 634 | 5.45e-117 | 363 |
| MS.gene012589.t1 | AT1G13790 | 39.768 | 518 | 282 | 8 | 118 | 618 | 219 | 723 | 1.59e-103 | 330 |
| MS.gene012589.t1 | AT1G13790 | 37.662 | 77 | 48 | 0 | 12 | 88 | 3 | 79 | 4.01e-12 | 69.7 |
| MS.gene012589.t1 | AT1G13790 | 39.768 | 518 | 282 | 8 | 118 | 618 | 219 | 723 | 1.59e-103 | 330 |
| MS.gene012589.t1 | AT1G13790 | 37.662 | 77 | 48 | 0 | 12 | 88 | 3 | 79 | 4.01e-12 | 69.7 |
| MS.gene012589.t1 | AT3G12550 | 33.510 | 567 | 342 | 11 | 16 | 556 | 5 | 562 | 1.25e-89 | 290 |
| MS.gene012589.t1 | AT5G59390 | 35.436 | 539 | 307 | 13 | 114 | 628 | 30 | 551 | 3.37e-83 | 272 |
| MS.gene012589.t1 | AT5G59390 | 35.436 | 539 | 307 | 13 | 114 | 628 | 30 | 551 | 3.37e-83 | 272 |
| MS.gene012589.t1 | AT5G59390 | 35.436 | 539 | 307 | 13 | 114 | 628 | 30 | 551 | 3.37e-83 | 272 |
| MS.gene012589.t1 | AT5G59390 | 35.110 | 544 | 307 | 14 | 114 | 628 | 30 | 556 | 5.10e-81 | 266 |
| MS.gene012589.t1 | AT5G59390 | 35.110 | 544 | 307 | 14 | 114 | 628 | 30 | 556 | 5.10e-81 | 266 |
| MS.gene012589.t1 | AT4G01180 | 33.996 | 553 | 300 | 14 | 114 | 628 | 28 | 553 | 2.75e-75 | 251 |
| MS.gene012589.t1 | AT4G01780 | 31.631 | 509 | 229 | 10 | 123 | 629 | 79 | 470 | 4.35e-65 | 221 |
| MS.gene012589.t1 | AT3G29375 | 44.335 | 203 | 105 | 2 | 426 | 628 | 32 | 226 | 2.71e-47 | 166 |
| MS.gene012589.t1 | AT3G29375 | 44.335 | 203 | 105 | 2 | 426 | 628 | 155 | 349 | 5.20e-46 | 167 |
| MS.gene012589.t1 | AT2G16490 | 45.946 | 74 | 40 | 0 | 555 | 628 | 75 | 148 | 8.44e-17 | 79.3 |
| MS.gene012589.t1 | AT3G29375 | 38.843 | 121 | 66 | 2 | 426 | 546 | 32 | 144 | 9.18e-17 | 79.0 |
Find 144 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCTCTGGCAAAGTATT+TGG | 0.140548 | 8.1:+2349099 | MS.gene012589:CDS |
| TTCACTCTGACCACTTTAAA+AGG | 0.163774 | 8.1:-2351713 | None:intergenic |
| CAATTGAAGGATCTTGTTTA+AGG | 0.184121 | 8.1:-2350963 | None:intergenic |
| GGTAATAATAAAACTAATAT+TGG | 0.209949 | 8.1:+2351548 | MS.gene012589:CDS |
| CCATCCTTTAACTCCTTATA+AGG | 0.231876 | 8.1:-2348923 | None:intergenic |
| AAGAGCAACCTTAATGATTC+TGG | 0.249360 | 8.1:+2349244 | MS.gene012589:CDS |
| CAAACCTTATAAGGAGTTAA+AGG | 0.267169 | 8.1:+2348919 | MS.gene012589:CDS |
| GCCAGTATCCAGAATCATTA+AGG | 0.269275 | 8.1:-2349252 | None:intergenic |
| ATGGAGATTGAGGAACTAAA+AGG | 0.270338 | 8.1:+2351019 | MS.gene012589:CDS |
| AATAGAAAGTTTGGAGGATA+TGG | 0.275154 | 8.1:+2351132 | MS.gene012589:CDS |
| CCATGGAGCTTTGCTCTGTT+TGG | 0.285950 | 8.1:+2351660 | MS.gene012589:CDS |
| CAGGCCAGTTCAGACATTTA+TGG | 0.299736 | 8.1:+2349451 | MS.gene012589:CDS |
| GAAGCAAGAGTTCAAATATA+AGG | 0.303067 | 8.1:+2349006 | MS.gene012589:CDS |
| GGCAGACAAAATAGAAAGTT+TGG | 0.306256 | 8.1:+2351123 | MS.gene012589:CDS |
| ATACTCTGACAAACCTTATA+AGG | 0.314776 | 8.1:+2348910 | MS.gene012589:CDS |
| ATTTGTAATGTCAATTTCAT+TGG | 0.353548 | 8.1:-2349611 | None:intergenic |
| AGAAAAGTTGCGTAATGAAT+TGG | 0.355859 | 8.1:+2349986 | MS.gene012589:CDS |
| GTATTCATTTACTTCTTTCA+AGG | 0.362185 | 8.1:-2351931 | None:intergenic |
| TTTGGTCTGCTTCATTTACT+AGG | 0.363332 | 8.1:-2349129 | None:intergenic |
| CTCCTCCAGCATCCTACTTA+AGG | 0.373591 | 8.1:-2349680 | None:intergenic |
| TGCAGGTTGGTTGACAGCTT+CGG | 0.383198 | 8.1:-2349170 | None:intergenic |
| ACTGGAAGAGGACAAGAAAA+AGG | 0.383259 | 8.1:+2350088 | MS.gene012589:CDS |
| TGATCAAGAGAGGCAGAAAC+TGG | 0.385206 | 8.1:+2350070 | MS.gene012589:CDS |
| ACCTTAATGATTCTGGATAC+TGG | 0.387551 | 8.1:+2349251 | MS.gene012589:CDS |
| TTGCAAGTTATGAAACATCT+TGG | 0.395938 | 8.1:+2351046 | MS.gene012589:CDS |
| GAGGAATGAATCACTCTTGT+TGG | 0.397647 | 8.1:+2350733 | MS.gene012589:CDS |
| GGCCAATCGGGGAGTACCTT+CGG | 0.401670 | 8.1:+2349509 | MS.gene012589:CDS |
| CTTAAACAAGATCCTTCAAT+TGG | 0.401905 | 8.1:+2350964 | MS.gene012589:CDS |
| GGAAGAAATGAGCACTGAAT+TGG | 0.405229 | 8.1:+2351102 | MS.gene012589:CDS |
| TTGACAGCTTCGGCCAAAGC+CGG | 0.413440 | 8.1:-2349160 | None:intergenic |
| GGATGTCCATGTATTCTTCA+TGG | 0.417376 | 8.1:+2349303 | MS.gene012589:CDS |
| GGAGCTTTGCTCTGTTTGGC+AGG | 0.418461 | 8.1:+2351664 | MS.gene012589:CDS |
| ATCACTCTTGTTGGCTTCAA+AGG | 0.419125 | 8.1:+2350742 | MS.gene012589:CDS |
| CAGGCTTGTTGAAGAGCAAA+AGG | 0.422308 | 8.1:+2350793 | MS.gene012589:CDS |
| TTTCTTTCTCAAGAAGAAGC+TGG | 0.423912 | 8.1:+2351629 | MS.gene012589:CDS |
| GTAATAATAAAACTAATATT+GGG | 0.428154 | 8.1:+2351549 | MS.gene012589:CDS |
| GTCTGCTTCATTTACTAGGT+CGG | 0.430421 | 8.1:-2349125 | None:intergenic |
| TGACAGCTTCGGCCAAAGCC+GGG | 0.430548 | 8.1:-2349159 | None:intergenic |
| TATAATTGTGGAGGGCCAAT+CGG | 0.436933 | 8.1:+2349496 | MS.gene012589:CDS |
| TACAAAGTGAAGAACTTAAA+CGG | 0.437308 | 8.1:+2348950 | MS.gene012589:CDS |
| CCCATGATGTTTAGTTTCAA+AGG | 0.437487 | 8.1:-2349401 | None:intergenic |
| TGAGGAGGTACGAAGGATCT+TGG | 0.441330 | 8.1:+2349956 | MS.gene012589:CDS |
| AAACAGAAACGCCAAACAAA+AGG | 0.444045 | 8.1:+2349069 | MS.gene012589:CDS |
| TAATTCTCAACCTGCGGTGC+AGG | 0.450934 | 8.1:-2349187 | None:intergenic |
| CCTGTAGTTCATCATTGCTC+TGG | 0.453560 | 8.1:-2351189 | None:intergenic |
| TTCTTTCTCAAGAAGAAGCT+GGG | 0.457631 | 8.1:+2351630 | MS.gene012589:CDS |
| ATAATTGTGGAGGGCCAATC+GGG | 0.458752 | 8.1:+2349497 | MS.gene012589:CDS |
| TGGAGATTGAGGAACTAAAA+GGG | 0.462021 | 8.1:+2351020 | MS.gene012589:CDS |
| GACATCCAATGGTCTGTACT+TGG | 0.464959 | 8.1:-2349287 | None:intergenic |
| TAGCTGATGAGAATGTCTTC+AGG | 0.469727 | 8.1:+2350774 | MS.gene012589:CDS |
| TCCTTTGAAACTAAACATCA+TGG | 0.472800 | 8.1:+2349400 | MS.gene012589:CDS |
| TAATGTCAATTTCATTGGCC+AGG | 0.476378 | 8.1:-2349606 | None:intergenic |
| TTCCGAAGGTACTCCCCGAT+TGG | 0.479350 | 8.1:-2349511 | None:intergenic |
| TGCTGAACCTTTGCTTACTC+CGG | 0.483792 | 8.1:-2349047 | None:intergenic |
| CCATCCATAAATGTCTGAAC+TGG | 0.485326 | 8.1:-2349455 | None:intergenic |
| TAATATTGGGACGAAAAGAA+TGG | 0.490015 | 8.1:+2351562 | MS.gene012589:CDS |
| CACCATCCATGAAGAATACA+TGG | 0.492568 | 8.1:-2349309 | None:intergenic |
| AAAGGCAAACCACCTTGCTC+TGG | 0.493903 | 8.1:+2349087 | MS.gene012589:CDS |
| GATTTGATGCAACATGCAAC+CGG | 0.499938 | 8.1:+2349028 | MS.gene012589:CDS |
| AAAATTAGAAATGGAGATTG+AGG | 0.501255 | 8.1:+2351009 | MS.gene012589:CDS |
| AACATCATGGGAAGAAGGAC+TGG | 0.503730 | 8.1:+2349413 | MS.gene012589:CDS |
| TCAGCCTTCCTTTGTTCCGA+AGG | 0.504609 | 8.1:-2349525 | None:intergenic |
| GGATGCTGGAGGAGAAAGAC+AGG | 0.505595 | 8.1:+2349689 | MS.gene012589:CDS |
| CAGTTCAGACATTTATGGAT+GGG | 0.508021 | 8.1:+2349456 | MS.gene012589:CDS |
| CGCAGGTTGAGAATTATGTC+TGG | 0.508239 | 8.1:+2349194 | MS.gene012589:CDS |
| TGTCAACCAACCTGCACCGC+AGG | 0.510588 | 8.1:+2349177 | MS.gene012589:CDS |
| TAGTAGACTTCAACAATGAC+TGG | 0.511067 | 8.1:+2349344 | MS.gene012589:CDS |
| CATGTCCTTAAGTAGGATGC+TGG | 0.511615 | 8.1:+2349675 | MS.gene012589:CDS |
| TCACTCTGACCACTTTAAAA+GGG | 0.512768 | 8.1:-2351712 | None:intergenic |
| TATCAGTGAGTCTGAGATTG+AGG | 0.513014 | 8.1:+2348886 | MS.gene012589:CDS |
| AATTATGTCTGGCCATGGAC+AGG | 0.519380 | 8.1:+2349205 | MS.gene012589:CDS |
| CTCAGGTGCCCATATTGTGC+TGG | 0.519768 | 8.1:+2348977 | MS.gene012589:CDS |
| AATGGGAGACCTTGATGAGA+AGG | 0.520493 | 8.1:+2351580 | MS.gene012589:CDS |
| TCAAGAAGAAGCTGGGATGA+AGG | 0.521240 | 8.1:+2351637 | MS.gene012589:CDS |
| ACATGAGCTATGGAACTTCA+AGG | 0.521861 | 8.1:+2351977 | MS.gene012589:CDS |
| GACAGCTTCGGCCAAAGCCG+GGG | 0.523172 | 8.1:-2349158 | None:intergenic |
| CCAGTTCAGACATTTATGGA+TGG | 0.523268 | 8.1:+2349455 | MS.gene012589:CDS |
| CTGGCGCTCCTTGACAATGA+GGG | 0.524882 | 8.1:-2351170 | None:intergenic |
| AATATTGGGACGAAAAGAAT+GGG | 0.525422 | 8.1:+2351563 | MS.gene012589:CDS |
| CCAGAGCAATGATGAACTAC+AGG | 0.526461 | 8.1:+2351189 | MS.gene012589:CDS |
| CTTATTTAGATCTCTGCTCC+AGG | 0.528367 | 8.1:-2350033 | None:intergenic |
| AGATCCTTCGTACCTCCTCA+CGG | 0.530263 | 8.1:-2349953 | None:intergenic |
| AACTAAACATCATGGGAAGA+AGG | 0.530602 | 8.1:+2349408 | MS.gene012589:CDS |
| GGGGTTAAATGAAATGCTGA+AGG | 0.533320 | 8.1:+2351526 | MS.gene012589:intron |
| AAATAGCATTGTGGAAAACC+TGG | 0.534545 | 8.1:+2349588 | MS.gene012589:CDS |
| ATTTGCCAAGTACAGACCAT+TGG | 0.540423 | 8.1:+2349282 | MS.gene012589:CDS |
| CGTGAAGATGATTATAATTG+TGG | 0.540581 | 8.1:+2349484 | MS.gene012589:CDS |
| TCTCAACCTGCGGTGCAGGT+TGG | 0.544080 | 8.1:-2349183 | None:intergenic |
| TGATTCTGGATACTGGCTAA+AGG | 0.547223 | 8.1:+2349258 | MS.gene012589:CDS |
| CTTCATGGATGGTGACACTC+AGG | 0.551198 | 8.1:+2349318 | MS.gene012589:CDS |
| AAATGCGGAAGCTTGATACC+TGG | 0.551489 | 8.1:+2350015 | MS.gene012589:CDS |
| AGAAGACCATGTCCTTAAGT+AGG | 0.555180 | 8.1:+2349668 | MS.gene012589:CDS |
| AGAAGCTGGGATGAAGGCCA+TGG | 0.556908 | 8.1:+2351643 | MS.gene012589:CDS |
| TCTGGCGCTCCTTGACAATG+AGG | 0.559354 | 8.1:-2351171 | None:intergenic |
| TTGAGAATTATGTCTGGCCA+TGG | 0.559406 | 8.1:+2349200 | MS.gene012589:CDS |
| TGTACAGCATACCCACCACT+TGG | 0.569747 | 8.1:-2351957 | None:intergenic |
| GATCCTTCGTACCTCCTCAC+GGG | 0.574071 | 8.1:-2349952 | None:intergenic |
| AGCAGACCAAATACCTCCCC+CGG | 0.574685 | 8.1:+2349141 | MS.gene012589:CDS |
| AATGAATACAACCCAAGTGG+TGG | 0.575225 | 8.1:+2351945 | MS.gene012589:CDS |
| GGTATGCTGTACATGAGCTA+TGG | 0.579873 | 8.1:+2351967 | MS.gene012589:CDS |
| CCAAATACTTTGCCAGAGCA+AGG | 0.580035 | 8.1:-2349099 | None:intergenic |
| ACTTAAGCGCAAGAGAGGAT+AGG | 0.584806 | 8.1:+2352058 | MS.gene012589:CDS |
| GAAGATGATTATAATTGTGG+AGG | 0.585641 | 8.1:+2349487 | MS.gene012589:CDS |
| AGAAGTTATTACTTATATCG+TGG | 0.586754 | 8.1:+2352022 | MS.gene012589:CDS |
| AGTACCTTCGGAACAAAGGA+AGG | 0.587192 | 8.1:+2349521 | MS.gene012589:CDS |
| CCAAACAGAGCAAAGCTCCA+TGG | 0.587327 | 8.1:-2351660 | None:intergenic |
| AGAGAGGCAGAAACTGGAAG+AGG | 0.587763 | 8.1:+2350076 | MS.gene012589:CDS |
| CTGGAATTCAAAGGACATGC+AGG | 0.587852 | 8.1:+2349432 | MS.gene012589:CDS |
| GACTTCAACAATGACTGGAA+TGG | 0.589478 | 8.1:+2349349 | MS.gene012589:CDS |
| GAATCAAACCCTCATTGTCA+AGG | 0.592874 | 8.1:+2351162 | MS.gene012589:CDS |
| AAGAATACATGGACATCCAA+TGG | 0.592903 | 8.1:-2349298 | None:intergenic |
| AGACAAAATAGAAAGTTTGG+AGG | 0.593505 | 8.1:+2351126 | MS.gene012589:CDS |
| TTAACGATTATGCCTGTCCA+TGG | 0.594850 | 8.1:-2349217 | None:intergenic |
| CTTTATAGTACATACCTCAT+GGG | 0.595496 | 8.1:-2351741 | None:intergenic |
| GAACTTCAAGGAACAGAGGA+AGG | 0.596171 | 8.1:+2351989 | MS.gene012589:CDS |
| GTCCATGTATTCTTCATGGA+TGG | 0.597803 | 8.1:+2349307 | MS.gene012589:CDS |
| CCTTATAAGGAGTTAAAGGA+TGG | 0.598931 | 8.1:+2348923 | MS.gene012589:CDS |
| CAGCATCCTACTTAAGGACA+TGG | 0.599280 | 8.1:-2349674 | None:intergenic |
| ACAGCTTCGGCCAAAGCCGG+GGG | 0.602001 | 8.1:-2349157 | None:intergenic |
| CCTTTGAAACTAAACATCAT+GGG | 0.603923 | 8.1:+2349401 | MS.gene012589:CDS |
| GGGGAGTACCTTCGGAACAA+AGG | 0.609491 | 8.1:+2349517 | MS.gene012589:CDS |
| AAGCAACTTAAGCGCAAGAG+AGG | 0.619700 | 8.1:+2352053 | MS.gene012589:CDS |
| AAGATGATTATAATTGTGGA+GGG | 0.627167 | 8.1:+2349488 | MS.gene012589:CDS |
| GAAGAAGGACTGGAATTCAA+AGG | 0.628414 | 8.1:+2349423 | MS.gene012589:CDS |
| ATGAATACAACCCAAGTGGT+GGG | 0.633174 | 8.1:+2351946 | MS.gene012589:CDS |
| AGAACTTAAACGGCACACTC+AGG | 0.633398 | 8.1:+2348960 | MS.gene012589:CDS |
| CAGACATAATTCTCAACCTG+CGG | 0.633547 | 8.1:-2349193 | None:intergenic |
| CATGCAACCGGAGTAAGCAA+AGG | 0.637786 | 8.1:+2349040 | MS.gene012589:CDS |
| GGGTTAAATGAAATGCTGAA+GGG | 0.639837 | 8.1:+2351527 | MS.gene012589:CDS |
| AAGCCCGTGAGGAGGTACGA+AGG | 0.640443 | 8.1:+2349949 | MS.gene012589:CDS |
| GACACAGTCAGTTATAGATG+AGG | 0.652703 | 8.1:+2351842 | MS.gene012589:intron |
| GTCCTTAAGTAGGATGCTGG+AGG | 0.661594 | 8.1:+2349678 | MS.gene012589:CDS |
| AGGTACTAACTGATCAAGAG+AGG | 0.662179 | 8.1:+2350060 | MS.gene012589:CDS |
| GTACAGCATACCCACCACTT+GGG | 0.664374 | 8.1:-2351956 | None:intergenic |
| CAGAGATCTAAATAAGCGTG+AGG | 0.673270 | 8.1:+2350040 | MS.gene012589:CDS |
| TGAAAGCAGAAATAGCATTG+TGG | 0.673917 | 8.1:+2349579 | MS.gene012589:CDS |
| GTAAATGAATACAACCCAAG+TGG | 0.677594 | 8.1:+2351942 | MS.gene012589:CDS |
| TAATTGTGGAGGGCCAATCG+GGG | 0.679230 | 8.1:+2349498 | MS.gene012589:CDS |
| GCAGCGTAAAGCCCGTGAGG+AGG | 0.680045 | 8.1:+2349941 | MS.gene012589:CDS |
| TATGGAACTTCAAGGAACAG+AGG | 0.683112 | 8.1:+2351985 | MS.gene012589:CDS |
| TGTCTTTCTAGAAAGACTCG+AGG | 0.689901 | 8.1:+2350714 | MS.gene012589:intron |
| CAGAGTGAATGATACCCATG+AGG | 0.719794 | 8.1:+2351727 | MS.gene012589:CDS |
| TATGCAGCGTAAAGCCCGTG+AGG | 0.720834 | 8.1:+2349938 | MS.gene012589:CDS |
| AATACTTTGCCAGAGCAAGG+TGG | 0.722505 | 8.1:-2349096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTAAAAAAATAAA+AGG | - | chr8.1:2350548-2350567 | None:intergenic | 0.0% |
| !! | AAATAGTATAATAATTAACA+CGG | + | chr8.1:2351804-2351823 | MS.gene012589:intron | 10.0% |
| !! | GTAATAATAAAACTAATATT+GGG | + | chr8.1:2351549-2351568 | MS.gene012589:CDS | 10.0% |
| !! | ATCAATGTATACTATATATA+TGG | + | chr8.1:2350393-2350412 | MS.gene012589:intron | 15.0% |
| !! | GGTAATAATAAAACTAATAT+TGG | + | chr8.1:2351548-2351567 | MS.gene012589:CDS | 15.0% |
| !!! | ATTATACTATTTCTAAATTG+AGG | - | chr8.1:2351796-2351815 | None:intergenic | 15.0% |
| !!! | TTATTTTATTATTAGAGTCA+AGG | + | chr8.1:2349913-2349932 | MS.gene012589:intron | 15.0% |
| !!! | TTTTAAATATTTTTTGTTGC+TGG | + | chr8.1:2350144-2350163 | MS.gene012589:intron | 15.0% |
| !! | ATTTGTAATGTCAATTTCAT+TGG | - | chr8.1:2349614-2349633 | None:intergenic | 20.0% |
| !! | TATAAACAAGAGTAAATAGA+GGG | - | chr8.1:2350823-2350842 | None:intergenic | 20.0% |
| !! | TGAAGCTATTAAGAAAAAAA+TGG | + | chr8.1:2351081-2351100 | MS.gene012589:CDS | 20.0% |
| !! | TTATAAACAAGAGTAAATAG+AGG | - | chr8.1:2350824-2350843 | None:intergenic | 20.0% |
| !!! | AATTCTTATTTCCTAAAGAA+AGG | - | chr8.1:2351418-2351437 | None:intergenic | 20.0% |
| !!! | CTCTAATTTCTATTGTTTTA+GGG | + | chr8.1:2351506-2351525 | MS.gene012589:intron | 20.0% |
| !!! | TCTAATTTCTATTGTTTTAG+GGG | + | chr8.1:2351507-2351526 | MS.gene012589:intron | 20.0% |
| !!! | TCTCTAATTTCTATTGTTTT+AGG | + | chr8.1:2351505-2351524 | MS.gene012589:intron | 20.0% |
| ! | AAAATTAGAAATGGAGATTG+AGG | + | chr8.1:2351009-2351028 | MS.gene012589:CDS | 25.0% |
| ! | AAATTAGAGAGAGAAAAATG+AGG | - | chr8.1:2351495-2351514 | None:intergenic | 25.0% |
| ! | AAGATGATTATAATTGTGGA+GGG | + | chr8.1:2349488-2349507 | MS.gene012589:CDS | 25.0% |
| ! | AATTAGAGAGAGAAAAATGA+GGG | - | chr8.1:2351494-2351513 | None:intergenic | 25.0% |
| ! | ACGAAATTTCAACATAAATG+TGG | - | chr8.1:2350472-2350491 | None:intergenic | 25.0% |
| ! | AGAAGTTATTACTTATATCG+TGG | + | chr8.1:2352022-2352041 | MS.gene012589:CDS | 25.0% |
| ! | ATGAATTGGATGAAAAAATG+CGG | + | chr8.1:2350000-2350019 | MS.gene012589:CDS | 25.0% |
| ! | CAAGAATAGAAAAACATACA+TGG | - | chr8.1:2349806-2349825 | None:intergenic | 25.0% |
| ! | GAAGTAATATTTGAATCTTG+AGG | - | chr8.1:2350694-2350713 | None:intergenic | 25.0% |
| ! | GTATTCATTTACTTCTTTCA+AGG | - | chr8.1:2351934-2351953 | None:intergenic | 25.0% |
| ! | TACAAAGTGAAGAACTTAAA+CGG | + | chr8.1:2348950-2348969 | MS.gene012589:CDS | 25.0% |
| ! | TGCCAAACAAAAATTAGAAA+TGG | + | chr8.1:2351000-2351019 | MS.gene012589:CDS | 25.0% |
| ! | TTAAGAATACAAGACGATAA+AGG | - | chr8.1:2351322-2351341 | None:intergenic | 25.0% |
| !! | CTCCATTTCTAATTTTTGTT+TGG | - | chr8.1:2351005-2351024 | None:intergenic | 25.0% |
| !! | TCACAATAATCAAAAGCTTT+TGG | - | chr8.1:2350367-2350386 | None:intergenic | 25.0% |
| !!! | AAAAGCTTTTGATTATTGTG+AGG | + | chr8.1:2350366-2350385 | MS.gene012589:intron | 25.0% |
| !!! | ATGATGATTTTAAAGTCTTG+AGG | - | chr8.1:2350656-2350675 | None:intergenic | 25.0% |
| !!! | TTTTGCCTTATTGTATGTAA+AGG | + | chr8.1:2349761-2349780 | MS.gene012589:intron | 25.0% |
| AAAGTTGGGATTCACTTAAA+GGG | - | chr8.1:2350300-2350319 | None:intergenic | 30.0% | |
| AATAGAAAGTTTGGAGGATA+TGG | + | chr8.1:2351132-2351151 | MS.gene012589:CDS | 30.0% | |
| AATATTGGGACGAAAAGAAT+GGG | + | chr8.1:2351563-2351582 | MS.gene012589:CDS | 30.0% | |
| ACAAGACGATAAAGGTTAAA+AGG | - | chr8.1:2351314-2351333 | None:intergenic | 30.0% | |
| AGAAAAGTTGCGTAATGAAT+TGG | + | chr8.1:2349986-2350005 | MS.gene012589:CDS | 30.0% | |
| AGAATGTGAAAAATTCAGCA+TGG | + | chr8.1:2351687-2351706 | MS.gene012589:CDS | 30.0% | |
| AGACAAAATAGAAAGTTTGG+AGG | + | chr8.1:2351126-2351145 | MS.gene012589:CDS | 30.0% | |
| ATACTCTGACAAACCTTATA+AGG | + | chr8.1:2348910-2348929 | MS.gene012589:CDS | 30.0% | |
| ATTAGAGAGAGAAAAATGAG+GGG | - | chr8.1:2351493-2351512 | None:intergenic | 30.0% | |
| CAAACCTTATAAGGAGTTAA+AGG | + | chr8.1:2348919-2348938 | MS.gene012589:CDS | 30.0% | |
| CGTGAAGATGATTATAATTG+TGG | + | chr8.1:2349484-2349503 | MS.gene012589:CDS | 30.0% | |
| CTTAAACAAGATCCTTCAAT+TGG | + | chr8.1:2350964-2350983 | MS.gene012589:CDS | 30.0% | |
| CTTTATAGTACATACCTCAT+GGG | - | chr8.1:2351744-2351763 | None:intergenic | 30.0% | |
| GAAATTAAAAAAGCTCAAGC+AGG | + | chr8.1:2351872-2351891 | MS.gene012589:CDS | 30.0% | |
| GAAGATGATTATAATTGTGG+AGG | + | chr8.1:2349487-2349506 | MS.gene012589:CDS | 30.0% | |
| GAAGCAAGAGTTCAAATATA+AGG | + | chr8.1:2349006-2349025 | MS.gene012589:CDS | 30.0% | |
| GAGTAGAAAAAAACTTGCAT+AGG | + | chr8.1:2349845-2349864 | MS.gene012589:intron | 30.0% | |
| TAATATTGGGACGAAAAGAA+TGG | + | chr8.1:2351562-2351581 | MS.gene012589:CDS | 30.0% | |
| TCTTTATAGTACATACCTCA+TGG | - | chr8.1:2351745-2351764 | None:intergenic | 30.0% | |
| TTCTGCTGTGAATATATTGT+GGG | + | chr8.1:2351452-2351471 | MS.gene012589:intron | 30.0% | |
| TTGCAAGTTATGAAACATCT+TGG | + | chr8.1:2351046-2351065 | MS.gene012589:CDS | 30.0% | |
| ! | ACTTATACTGCATTTTGTTG+AGG | - | chr8.1:2349642-2349661 | None:intergenic | 30.0% |
| ! | CAATTGAAGGATCTTGTTTA+AGG | - | chr8.1:2350966-2350985 | None:intergenic | 30.0% |
| !! | AATCTATGCAACTTGTTAGT+TGG | - | chr8.1:2351351-2351370 | None:intergenic | 30.0% |
| !! | CCTTTGAAACTAAACATCAT+GGG | + | chr8.1:2349401-2349420 | MS.gene012589:CDS | 30.0% |
| !! | TCCTTTGAAACTAAACATCA+TGG | + | chr8.1:2349400-2349419 | MS.gene012589:CDS | 30.0% |
| !!! | CTAATTTTTTGCAAGGACAA+TGG | - | chr8.1:2350191-2350210 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCCAGCACAATAT+GGG | - | chr8.1:2348988-2349007 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTCCAGCACAATA+TGG | - | chr8.1:2348989-2349008 | None:intergenic | 30.0% |
| AAAAAAGCTCAAGCAGGAAT+GGG | + | chr8.1:2351878-2351897 | MS.gene012589:CDS | 35.0% | |
| AAACAGAAACGCCAAACAAA+AGG | + | chr8.1:2349069-2349088 | MS.gene012589:CDS | 35.0% | |
| AAATAGCATTGTGGAAAACC+TGG | + | chr8.1:2349588-2349607 | MS.gene012589:CDS | 35.0% | |
| AACTAAACATCATGGGAAGA+AGG | + | chr8.1:2349408-2349427 | MS.gene012589:CDS | 35.0% | |
| AAGAATACATGGACATCCAA+TGG | - | chr8.1:2349301-2349320 | None:intergenic | 35.0% | |
| AAGAGCAACCTTAATGATTC+TGG | + | chr8.1:2349244-2349263 | MS.gene012589:CDS | 35.0% | |
| ACCTTAATGATTCTGGATAC+TGG | + | chr8.1:2349251-2349270 | MS.gene012589:CDS | 35.0% | |
| AGCAAGTAGAGATTAGAAAG+TGG | - | chr8.1:2350626-2350645 | None:intergenic | 35.0% | |
| ATGGAGATTGAGGAACTAAA+AGG | + | chr8.1:2351019-2351038 | MS.gene012589:CDS | 35.0% | |
| CAAGTTGCATAGATTTCTTC+AGG | + | chr8.1:2351356-2351375 | MS.gene012589:intron | 35.0% | |
| CACAGCCTTTACATACAATA+AGG | - | chr8.1:2349769-2349788 | None:intergenic | 35.0% | |
| CAGTTCAGACATTTATGGAT+GGG | + | chr8.1:2349456-2349475 | MS.gene012589:CDS | 35.0% | |
| CCATCCTTTAACTCCTTATA+AGG | - | chr8.1:2348926-2348945 | None:intergenic | 35.0% | |
| CCTTATAAGGAGTTAAAGGA+TGG | + | chr8.1:2348923-2348942 | MS.gene012589:CDS | 35.0% | |
| GAAAGTTGGGATTCACTTAA+AGG | - | chr8.1:2350301-2350320 | None:intergenic | 35.0% | |
| GATCATCTCTACCTTTCTTT+AGG | + | chr8.1:2351404-2351423 | MS.gene012589:intron | 35.0% | |
| GCAAGTAGAGATTAGAAAGT+GGG | - | chr8.1:2350625-2350644 | None:intergenic | 35.0% | |
| GGCAGACAAAATAGAAAGTT+TGG | + | chr8.1:2351123-2351142 | MS.gene012589:CDS | 35.0% | |
| GGGTTAAATGAAATGCTGAA+GGG | + | chr8.1:2351527-2351546 | MS.gene012589:CDS | 35.0% | |
| GTAAATGAATACAACCCAAG+TGG | + | chr8.1:2351942-2351961 | MS.gene012589:CDS | 35.0% | |
| GTTCTGCTGTGAATATATTG+TGG | + | chr8.1:2351451-2351470 | MS.gene012589:intron | 35.0% | |
| TAAAAAAGCTCAAGCAGGAA+TGG | + | chr8.1:2351877-2351896 | MS.gene012589:CDS | 35.0% | |
| TAATGTCAATTTCATTGGCC+AGG | - | chr8.1:2349609-2349628 | None:intergenic | 35.0% | |
| TAGTAGACTTCAACAATGAC+TGG | + | chr8.1:2349344-2349363 | MS.gene012589:CDS | 35.0% | |
| TCACAAAAACCTTCTCATCA+AGG | - | chr8.1:2351592-2351611 | None:intergenic | 35.0% | |
| TGAAAGCAGAAATAGCATTG+TGG | + | chr8.1:2349579-2349598 | MS.gene012589:CDS | 35.0% | |
| TGGAGATTGAGGAACTAAAA+GGG | + | chr8.1:2351020-2351039 | MS.gene012589:CDS | 35.0% | |
| TGGGATGAAAGAAAACACAT+CGG | - | chr8.1:2350606-2350625 | None:intergenic | 35.0% | |
| TTAGAGAGAGAAAAATGAGG+GGG | - | chr8.1:2351492-2351511 | None:intergenic | 35.0% | |
| TTCACTCTGACCACTTTAAA+AGG | - | chr8.1:2351716-2351735 | None:intergenic | 35.0% | |
| TTCACTTAAAGGGAGTGAAT+AGG | - | chr8.1:2350290-2350309 | None:intergenic | 35.0% | |
| TTCTTTCTCAAGAAGAAGCT+GGG | + | chr8.1:2351630-2351649 | MS.gene012589:CDS | 35.0% | |
| TTTCTTTCTCAAGAAGAAGC+TGG | + | chr8.1:2351629-2351648 | MS.gene012589:CDS | 35.0% | |
| TTTGGTCTGCTTCATTTACT+AGG | - | chr8.1:2349132-2349151 | None:intergenic | 35.0% | |
| ! | CCCATGATGTTTAGTTTCAA+AGG | - | chr8.1:2349404-2349423 | None:intergenic | 35.0% |
| ! | CTTCACAATGCTTTTGTTGA+AGG | + | chr8.1:2349712-2349731 | MS.gene012589:CDS | 35.0% |
| ! | TCACTCTGACCACTTTAAAA+GGG | - | chr8.1:2351715-2351734 | None:intergenic | 35.0% |
| ! | TCTTTTTCTCTCTGGTAGTT+TGG | - | chr8.1:2350938-2350957 | None:intergenic | 35.0% |
| !!! | CTAGTTGCTTTTCCAATTGA+AGG | - | chr8.1:2350979-2350998 | None:intergenic | 35.0% |
| !!! | GACAGGTCTAATTTTTTGCA+AGG | - | chr8.1:2350198-2350217 | None:intergenic | 35.0% |
| AAAAAGCTCAAGCAGGAATG+GGG | + | chr8.1:2351879-2351898 | MS.gene012589:CDS | 40.0% | |
| AAGTGAATCCCAACTTTCGT+TGG | + | chr8.1:2350303-2350322 | MS.gene012589:intron | 40.0% | |
| AATGAATACAACCCAAGTGG+TGG | + | chr8.1:2351945-2351964 | MS.gene012589:CDS | 40.0% | |
| ACATGAGCTATGGAACTTCA+AGG | + | chr8.1:2351977-2351996 | MS.gene012589:CDS | 40.0% | |
| ACTGGAAGAGGACAAGAAAA+AGG | + | chr8.1:2350088-2350107 | MS.gene012589:CDS | 40.0% | |
| AGAAGACCATGTCCTTAAGT+AGG | + | chr8.1:2349668-2349687 | MS.gene012589:CDS | 40.0% | |
| AGGTACTAACTGATCAAGAG+AGG | + | chr8.1:2350060-2350079 | MS.gene012589:CDS | 40.0% | |
| ATGAATACAACCCAAGTGGT+GGG | + | chr8.1:2351946-2351965 | MS.gene012589:CDS | 40.0% | |
| ATGCAAATCAAGAGCAACCA+AGG | - | chr8.1:2350246-2350265 | None:intergenic | 40.0% | |
| ATTAGACCTGTCTTTGTCGA+TGG | + | chr8.1:2350206-2350225 | MS.gene012589:intron | 40.0% | |
| ATTTGCCAAGTACAGACCAT+TGG | + | chr8.1:2349282-2349301 | MS.gene012589:CDS | 40.0% | |
| CACCATCCATGAAGAATACA+TGG | - | chr8.1:2349312-2349331 | None:intergenic | 40.0% | |
| CAGACATAATTCTCAACCTG+CGG | - | chr8.1:2349196-2349215 | None:intergenic | 40.0% | |
| CAGAGATCTAAATAAGCGTG+AGG | + | chr8.1:2350040-2350059 | MS.gene012589:CDS | 40.0% | |
| CCAGTTCAGACATTTATGGA+TGG | + | chr8.1:2349455-2349474 | MS.gene012589:CDS | 40.0% | |
| CCATCCATAAATGTCTGAAC+TGG | - | chr8.1:2349458-2349477 | None:intergenic | 40.0% | |
| CTACCAGAGAGAAAAAGAAG+AGG | + | chr8.1:2350940-2350959 | MS.gene012589:intron | 40.0% | |
| CTCTTAGTCCAATTAGCAGA+TGG | - | chr8.1:2350336-2350355 | None:intergenic | 40.0% | |
| CTTATTTAGATCTCTGCTCC+AGG | - | chr8.1:2350036-2350055 | None:intergenic | 40.0% | |
| GAAGAAGGACTGGAATTCAA+AGG | + | chr8.1:2349423-2349442 | MS.gene012589:CDS | 40.0% | |
| GAATCAAACCCTCATTGTCA+AGG | + | chr8.1:2351162-2351181 | MS.gene012589:CDS | 40.0% | |
| GACACAGTCAGTTATAGATG+AGG | + | chr8.1:2351842-2351861 | MS.gene012589:intron | 40.0% | |
| GACTTCAACAATGACTGGAA+TGG | + | chr8.1:2349349-2349368 | MS.gene012589:CDS | 40.0% | |
| GAGGAATGAATCACTCTTGT+TGG | + | chr8.1:2350733-2350752 | MS.gene012589:CDS | 40.0% | |
| GATTTGATGCAACATGCAAC+CGG | + | chr8.1:2349028-2349047 | MS.gene012589:CDS | 40.0% | |
| GCCAGTATCCAGAATCATTA+AGG | - | chr8.1:2349255-2349274 | None:intergenic | 40.0% | |
| GGATGTCCATGTATTCTTCA+TGG | + | chr8.1:2349303-2349322 | MS.gene012589:CDS | 40.0% | |
| GGGATGAAAGAAAACACATC+GGG | - | chr8.1:2350605-2350624 | None:intergenic | 40.0% | |
| GGGGTTAAATGAAATGCTGA+AGG | + | chr8.1:2351526-2351545 | MS.gene012589:intron | 40.0% | |
| GTCCATGTATTCTTCATGGA+TGG | + | chr8.1:2349307-2349326 | MS.gene012589:CDS | 40.0% | |
| GTCTGCTTCATTTACTAGGT+CGG | - | chr8.1:2349128-2349147 | None:intergenic | 40.0% | |
| TAGCTGATGAGAATGTCTTC+AGG | + | chr8.1:2350774-2350793 | MS.gene012589:CDS | 40.0% | |
| TATAATTGTGGAGGGCCAAT+CGG | + | chr8.1:2349496-2349515 | MS.gene012589:CDS | 40.0% | |
| TATGGAACTTCAAGGAACAG+AGG | + | chr8.1:2351985-2352004 | MS.gene012589:CDS | 40.0% | |
| TCAGCAGAAGACATTCACAA+TGG | - | chr8.1:2350906-2350925 | None:intergenic | 40.0% | |
| TTAACGATTATGCCTGTCCA+TGG | - | chr8.1:2349220-2349239 | None:intergenic | 40.0% | |
| TTAGTCCAATTAGCAGATGG+TGG | - | chr8.1:2350333-2350352 | None:intergenic | 40.0% | |
| TTGAGAATTATGTCTGGCCA+TGG | + | chr8.1:2349200-2349219 | MS.gene012589:CDS | 40.0% | |
| ! | GTGAATGTCTTCTGCTGATT+TGG | + | chr8.1:2350908-2350927 | MS.gene012589:intron | 40.0% |
| ! | TATCAGTGAGTCTGAGATTG+AGG | + | chr8.1:2348886-2348905 | MS.gene012589:CDS | 40.0% |
| ! | TGATTCTGGATACTGGCTAA+AGG | + | chr8.1:2349258-2349277 | MS.gene012589:CDS | 40.0% |
| ! | TGTCTTTCTAGAAAGACTCG+AGG | + | chr8.1:2350714-2350733 | MS.gene012589:intron | 40.0% |
| !! | AAGGTGGTTTGCCTTTTGTT+TGG | - | chr8.1:2349083-2349102 | None:intergenic | 40.0% |
| !! | ATCACTCTTGTTGGCTTCAA+AGG | + | chr8.1:2350742-2350761 | MS.gene012589:CDS | 40.0% |
| !! | GGAAGAAATGAGCACTGAAT+TGG | + | chr8.1:2351102-2351121 | MS.gene012589:CDS | 40.0% |
| AAATGCGGAAGCTTGATACC+TGG | + | chr8.1:2350015-2350034 | MS.gene012589:CDS | 45.0% | |
| AACATCATGGGAAGAAGGAC+TGG | + | chr8.1:2349413-2349432 | MS.gene012589:CDS | 45.0% | |
| AAGCAACTTAAGCGCAAGAG+AGG | + | chr8.1:2352053-2352072 | MS.gene012589:CDS | 45.0% | |
| AAGGCTGTGTGCTTCATGTT+TGG | + | chr8.1:2349780-2349799 | MS.gene012589:intron | 45.0% | |
| AATACTTTGCCAGAGCAAGG+TGG | - | chr8.1:2349099-2349118 | None:intergenic | 45.0% | |
| AATGGGAGACCTTGATGAGA+AGG | + | chr8.1:2351580-2351599 | MS.gene012589:CDS | 45.0% | |
| AATTATGTCTGGCCATGGAC+AGG | + | chr8.1:2349205-2349224 | MS.gene012589:CDS | 45.0% | |
| AGAACTTAAACGGCACACTC+AGG | + | chr8.1:2348960-2348979 | MS.gene012589:CDS | 45.0% | |
| AGGATACCATCGACAAAGAC+AGG | - | chr8.1:2350215-2350234 | None:intergenic | 45.0% | |
| AGTACCTTCGGAACAAAGGA+AGG | + | chr8.1:2349521-2349540 | MS.gene012589:CDS | 45.0% | |
| ATAATTGTGGAGGGCCAATC+GGG | + | chr8.1:2349497-2349516 | MS.gene012589:CDS | 45.0% | |
| CAGAGTGAATGATACCCATG+AGG | + | chr8.1:2351727-2351746 | MS.gene012589:CDS | 45.0% | |
| CAGCATCCTACTTAAGGACA+TGG | - | chr8.1:2349677-2349696 | None:intergenic | 45.0% | |
| CAGGCCAGTTCAGACATTTA+TGG | + | chr8.1:2349451-2349470 | MS.gene012589:CDS | 45.0% | |
| CATGTCCTTAAGTAGGATGC+TGG | + | chr8.1:2349675-2349694 | MS.gene012589:CDS | 45.0% | |
| CCAAATACTTTGCCAGAGCA+AGG | - | chr8.1:2349102-2349121 | None:intergenic | 45.0% | |
| CCAGAGCAATGATGAACTAC+AGG | + | chr8.1:2351189-2351208 | MS.gene012589:CDS | 45.0% | |
| CCTGTAGTTCATCATTGCTC+TGG | - | chr8.1:2351192-2351211 | None:intergenic | 45.0% | |
| CTGGAATTCAAAGGACATGC+AGG | + | chr8.1:2349432-2349451 | MS.gene012589:CDS | 45.0% | |
| GAACTTCAAGGAACAGAGGA+AGG | + | chr8.1:2351989-2352008 | MS.gene012589:CDS | 45.0% | |
| GACATCCAATGGTCTGTACT+TGG | - | chr8.1:2349290-2349309 | None:intergenic | 45.0% | |
| GGTATGCTGTACATGAGCTA+TGG | + | chr8.1:2351967-2351986 | MS.gene012589:CDS | 45.0% | |
| TCAAGAAGAAGCTGGGATGA+AGG | + | chr8.1:2351637-2351656 | MS.gene012589:CDS | 45.0% | |
| TCAAGAGCAACCAAGGACAT+TGG | - | chr8.1:2350239-2350258 | None:intergenic | 45.0% | |
| TGATCAAGAGAGGCAGAAAC+TGG | + | chr8.1:2350070-2350089 | MS.gene012589:CDS | 45.0% | |
| TGCTGAACCTTTGCTTACTC+CGG | - | chr8.1:2349050-2349069 | None:intergenic | 45.0% | |
| TGGTATCCTACCAATGTCCT+TGG | + | chr8.1:2350226-2350245 | MS.gene012589:intron | 45.0% | |
| ! | AGGCCTCTTCTTTTTCTCTC+TGG | - | chr8.1:2350946-2350965 | None:intergenic | 45.0% |
| ! | CCTTGCTCTGGCAAAGTATT+TGG | + | chr8.1:2349099-2349118 | MS.gene012589:CDS | 45.0% |
| ! | CGCAGGTTGAGAATTATGTC+TGG | + | chr8.1:2349194-2349213 | MS.gene012589:CDS | 45.0% |
| !! | AGCATGGCACCCTTTTAAAG+TGG | + | chr8.1:2351703-2351722 | MS.gene012589:CDS | 45.0% |
| !! | CAGGCTTGTTGAAGAGCAAA+AGG | + | chr8.1:2350793-2350812 | MS.gene012589:CDS | 45.0% |
| !! | TCCAATTAGCAGATGGTGGA+AGG | - | chr8.1:2350329-2350348 | None:intergenic | 45.0% |
| !!! | CGGGCAGATGTGGTTTTTTA+TGG | - | chr8.1:2350586-2350605 | None:intergenic | 45.0% |
| !!! | TTTTTTTAATTCTATATAAA+AGG | + | chr8.1:2351264-2351283 | MS.gene012589:intron | 5.0% |
| !!! | TTTTTTTTTTAACAAATATA+TGG | + | chr8.1:2350431-2350450 | MS.gene012589:intron | 5.0% |
| AAAGGCAAACCACCTTGCTC+TGG | + | chr8.1:2349087-2349106 | MS.gene012589:CDS | 50.0% | |
| AGAGAGGCAGAAACTGGAAG+AGG | + | chr8.1:2350076-2350095 | MS.gene012589:CDS | 50.0% | |
| AGATCCTTCGTACCTCCTCA+CGG | - | chr8.1:2349956-2349975 | None:intergenic | 50.0% | |
| CATGCAACCGGAGTAAGCAA+AGG | + | chr8.1:2349040-2349059 | MS.gene012589:CDS | 50.0% | |
| CCAAACAGAGCAAAGCTCCA+TGG | - | chr8.1:2351663-2351682 | None:intergenic | 50.0% | |
| CCATGGAGCTTTGCTCTGTT+TGG | + | chr8.1:2351660-2351679 | MS.gene012589:CDS | 50.0% | |
| CTCCTCCAGCATCCTACTTA+AGG | - | chr8.1:2349683-2349702 | None:intergenic | 50.0% | |
| CTTCATGGATGGTGACACTC+AGG | + | chr8.1:2349318-2349337 | MS.gene012589:CDS | 50.0% | |
| GAAAACACATCGGGCAGATG+TGG | - | chr8.1:2350596-2350615 | None:intergenic | 50.0% | |
| GAGCAACCAAGGACATTGGT+AGG | - | chr8.1:2350235-2350254 | None:intergenic | 50.0% | |
| GCCTTCCACCATCTGCTAAT+TGG | + | chr8.1:2350325-2350344 | MS.gene012589:intron | 50.0% | |
| GGTAGAGATGATCTTCACGC+AGG | - | chr8.1:2351397-2351416 | None:intergenic | 50.0% | |
| GTACAGCATACCCACCACTT+GGG | - | chr8.1:2351959-2351978 | None:intergenic | 50.0% | |
| GTCCTTAAGTAGGATGCTGG+AGG | + | chr8.1:2349678-2349697 | MS.gene012589:CDS | 50.0% | |
| GTGGAAGGCCAACGAAAGTT+GGG | - | chr8.1:2350314-2350333 | None:intergenic | 50.0% | |
| TAATTCTCAACCTGCGGTGC+AGG | - | chr8.1:2349190-2349209 | None:intergenic | 50.0% | |
| TAATTGTGGAGGGCCAATCG+GGG | + | chr8.1:2349498-2349517 | MS.gene012589:CDS | 50.0% | |
| TCAGCCTTCCTTTGTTCCGA+AGG | - | chr8.1:2349528-2349547 | None:intergenic | 50.0% | |
| TGTACAGCATACCCACCACT+TGG | - | chr8.1:2351960-2351979 | None:intergenic | 50.0% | |
| ! | TGAGGAGGTACGAAGGATCT+TGG | + | chr8.1:2349956-2349975 | MS.gene012589:CDS | 50.0% |
| !! | TGCAGGTTGGTTGACAGCTT+CGG | - | chr8.1:2349173-2349192 | None:intergenic | 50.0% |
| AGAAGCTGGGATGAAGGCCA+TGG | + | chr8.1:2351643-2351662 | MS.gene012589:CDS | 55.0% | |
| AGCAGACCAAATACCTCCCC+CGG | + | chr8.1:2349141-2349160 | MS.gene012589:CDS | 55.0% | |
| CTCAGGTGCCCATATTGTGC+TGG | + | chr8.1:2348977-2348996 | MS.gene012589:CDS | 55.0% | |
| CTGGCGCTCCTTGACAATGA+GGG | - | chr8.1:2351173-2351192 | None:intergenic | 55.0% | |
| GATCCTTCGTACCTCCTCAC+GGG | - | chr8.1:2349955-2349974 | None:intergenic | 55.0% | |
| GGAGCTTTGCTCTGTTTGGC+AGG | + | chr8.1:2351664-2351683 | MS.gene012589:CDS | 55.0% | |
| GGATGCTGGAGGAGAAAGAC+AGG | + | chr8.1:2349689-2349708 | MS.gene012589:CDS | 55.0% | |
| GGTGGAAGGCCAACGAAAGT+TGG | - | chr8.1:2350315-2350334 | None:intergenic | 55.0% | |
| TATGCAGCGTAAAGCCCGTG+AGG | + | chr8.1:2349938-2349957 | MS.gene012589:CDS | 55.0% | |
| TCTGGCGCTCCTTGACAATG+AGG | - | chr8.1:2351174-2351193 | None:intergenic | 55.0% | |
| TTGACAGCTTCGGCCAAAGC+CGG | - | chr8.1:2349163-2349182 | None:intergenic | 55.0% | |
| !! | GGGGAGTACCTTCGGAACAA+AGG | + | chr8.1:2349517-2349536 | MS.gene012589:CDS | 55.0% |
| !! | TTCCGAAGGTACTCCCCGAT+TGG | - | chr8.1:2349514-2349533 | None:intergenic | 55.0% |
| CCAAATACCTCCCCCGGCTT+TGG | + | chr8.1:2349147-2349166 | MS.gene012589:CDS | 60.0% | |
| TCTCAACCTGCGGTGCAGGT+TGG | - | chr8.1:2349186-2349205 | None:intergenic | 60.0% | |
| TGACAGCTTCGGCCAAAGCC+GGG | - | chr8.1:2349162-2349181 | None:intergenic | 60.0% | |
| TGTCAACCAACCTGCACCGC+AGG | + | chr8.1:2349177-2349196 | MS.gene012589:CDS | 60.0% | |
| ! | AAGCCCGTGAGGAGGTACGA+AGG | + | chr8.1:2349949-2349968 | MS.gene012589:CDS | 60.0% |
| !! | CCAAAGCCGGGGGAGGTATT+TGG | - | chr8.1:2349150-2349169 | None:intergenic | 60.0% |
| !! | GGCCAATCGGGGAGTACCTT+CGG | + | chr8.1:2349509-2349528 | MS.gene012589:CDS | 60.0% |
| ACAGCTTCGGCCAAAGCCGG+GGG | - | chr8.1:2349160-2349179 | None:intergenic | 65.0% | |
| GACAGCTTCGGCCAAAGCCG+GGG | - | chr8.1:2349161-2349180 | None:intergenic | 65.0% | |
| GCAGCGTAAAGCCCGTGAGG+AGG | + | chr8.1:2349941-2349960 | MS.gene012589:CDS | 65.0% | |
| GCTTCGGCCAAAGCCGGGGG+AGG | - | chr8.1:2349157-2349176 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 2348857 | 2352079 | 2348857 | ID=MS.gene012589 |
| chr8.1 | mRNA | 2348857 | 2352079 | 2348857 | ID=MS.gene012589.t1;Parent=MS.gene012589 |
| chr8.1 | exon | 2348857 | 2349733 | 2348857 | ID=MS.gene012589.t1.exon1;Parent=MS.gene012589.t1 |
| chr8.1 | CDS | 2348857 | 2349733 | 2348857 | ID=cds.MS.gene012589.t1;Parent=MS.gene012589.t1 |
| chr8.1 | exon | 2349928 | 2350109 | 2349928 | ID=MS.gene012589.t1.exon2;Parent=MS.gene012589.t1 |
| chr8.1 | CDS | 2349928 | 2350109 | 2349928 | ID=cds.MS.gene012589.t1;Parent=MS.gene012589.t1 |
| chr8.1 | exon | 2350725 | 2350814 | 2350725 | ID=MS.gene012589.t1.exon3;Parent=MS.gene012589.t1 |
| chr8.1 | CDS | 2350725 | 2350814 | 2350725 | ID=cds.MS.gene012589.t1;Parent=MS.gene012589.t1 |
| chr8.1 | exon | 2350947 | 2351234 | 2350947 | ID=MS.gene012589.t1.exon4;Parent=MS.gene012589.t1 |
| chr8.1 | CDS | 2350947 | 2351234 | 2350947 | ID=cds.MS.gene012589.t1;Parent=MS.gene012589.t1 |
| chr8.1 | exon | 2351527 | 2351748 | 2351527 | ID=MS.gene012589.t1.exon5;Parent=MS.gene012589.t1 |
| chr8.1 | CDS | 2351527 | 2351748 | 2351527 | ID=cds.MS.gene012589.t1;Parent=MS.gene012589.t1 |
| chr8.1 | exon | 2351849 | 2352079 | 2351849 | ID=MS.gene012589.t1.exon6;Parent=MS.gene012589.t1 |
| chr8.1 | CDS | 2351849 | 2352079 | 2351849 | ID=cds.MS.gene012589.t1;Parent=MS.gene012589.t1 |
| Gene Sequence |
| Protein sequence |
