Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034251.t1 | RHN64611.1 | 86 | 629 | 84 | 4 | 1 | 625 | 1 | 629 | 3.30E-271 | 944.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034251.t1 | Q9S9P3 | 55.1 | 632 | 270 | 5 | 5 | 624 | 4 | 633 | 2.9e-167 | 590.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034251.t1 | A0A396IIA7 | 86.0 | 629 | 84 | 4 | 1 | 625 | 1 | 629 | 2.4e-271 | 944.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034251 | MS.gene001928 | PPI |
| MS.gene034251 | MS.gene035805 | PPI |
| MS.gene034251 | MS.gene042280 | PPI |
| MS.gene034251 | MS.gene40741 | PPI |
| MS.gene034251 | MS.gene042281 | PPI |
| MS.gene034251 | MS.gene52620 | PPI |
| MS.gene034251 | MS.gene053226 | PPI |
| MS.gene034251 | MS.gene035629 | PPI |
| MS.gene034251 | MS.gene064542 | PPI |
| MS.gene034251 | MS.gene035570 | PPI |
| MS.gene034251 | MS.gene042282 | PPI |
| MS.gene44056 | MS.gene034251 | PPI |
| MS.gene034251 | MS.gene012490 | PPI |
| MS.gene034251 | MS.gene035571 | PPI |
| MS.gene034251 | MS.gene91547 | PPI |
| MS.gene034251 | MS.gene044806 | PPI |
| MS.gene034251 | MS.gene005189 | PPI |
| MS.gene034251 | MS.gene73119 | PPI |
| MS.gene034251 | MS.gene88066 | PPI |
| MS.gene034251 | MS.gene86666 | PPI |
| MS.gene034251 | MS.gene012586 | PPI |
| MS.gene012587 | MS.gene034251 | PPI |
| MS.gene034251 | MS.gene62095 | PPI |
| MS.gene034251 | MS.gene012589 | PPI |
| MS.gene034251 | MS.gene000608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034251.t1 | MTR_4g006760 | 97.604 | 626 | 15 | 0 | 1 | 626 | 1 | 626 | 0.0 | 1244 |
| MS.gene034251.t1 | MTR_4g125920 | 87.440 | 629 | 75 | 4 | 1 | 625 | 1 | 629 | 0.0 | 1053 |
| MS.gene034251.t1 | MTR_4g131350 | 86.804 | 629 | 79 | 4 | 1 | 625 | 54 | 682 | 0.0 | 1045 |
| MS.gene034251.t1 | MTR_4g131310 | 72.284 | 451 | 81 | 5 | 1 | 446 | 1 | 412 | 0.0 | 573 |
| MS.gene034251.t1 | MTR_4g131310 | 86.765 | 68 | 9 | 0 | 550 | 617 | 390 | 457 | 2.86e-30 | 124 |
| MS.gene034251.t1 | MTR_3g067815 | 43.302 | 642 | 339 | 9 | 1 | 622 | 1 | 637 | 4.32e-172 | 504 |
| MS.gene034251.t1 | MTR_5g079940 | 40.979 | 654 | 348 | 13 | 5 | 625 | 472 | 1120 | 3.20e-144 | 447 |
| MS.gene034251.t1 | MTR_5g079940 | 44.231 | 104 | 54 | 4 | 1 | 102 | 1 | 102 | 4.25e-16 | 82.8 |
| MS.gene034251.t1 | MTR_5g079940 | 43.023 | 86 | 43 | 3 | 19 | 103 | 131 | 211 | 4.98e-14 | 76.3 |
| MS.gene034251.t1 | MTR_5g079940 | 41.860 | 86 | 45 | 2 | 19 | 103 | 247 | 328 | 7.09e-14 | 75.9 |
| MS.gene034251.t1 | MTR_5g079940 | 40.426 | 94 | 52 | 3 | 5 | 94 | 353 | 446 | 8.13e-12 | 68.9 |
| MS.gene034251.t1 | MTR_2g097020 | 35.180 | 668 | 345 | 15 | 13 | 614 | 10 | 655 | 6.64e-108 | 340 |
| MS.gene034251.t1 | MTR_2g097010 | 35.285 | 649 | 343 | 13 | 31 | 614 | 30 | 666 | 2.34e-101 | 323 |
| MS.gene034251.t1 | MTR_4g046643 | 36.177 | 633 | 339 | 15 | 31 | 608 | 30 | 652 | 2.45e-96 | 311 |
| MS.gene034251.t1 | MTR_2g095400 | 34.370 | 643 | 360 | 12 | 10 | 614 | 7 | 625 | 5.90e-86 | 281 |
| MS.gene034251.t1 | MTR_4g126200 | 44.275 | 262 | 115 | 4 | 381 | 624 | 3 | 251 | 1.50e-62 | 208 |
| MS.gene034251.t1 | MTR_2g097000 | 37.731 | 379 | 195 | 8 | 266 | 614 | 10 | 377 | 1.81e-57 | 199 |
| MS.gene034251.t1 | MTR_3g067855 | 50.685 | 219 | 104 | 4 | 408 | 625 | 123 | 338 | 8.35e-56 | 193 |
| MS.gene034251.t1 | MTR_3g067845 | 42.460 | 252 | 139 | 4 | 376 | 625 | 4 | 251 | 6.02e-48 | 169 |
| MS.gene034251.t1 | MTR_3g067825 | 48.000 | 100 | 42 | 3 | 533 | 625 | 7 | 103 | 1.52e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034251.t1 | AT1G15910 | 56.543 | 619 | 255 | 5 | 18 | 624 | 17 | 633 | 0.0 | 671 |
| MS.gene034251.t1 | AT4G00380 | 54.854 | 618 | 266 | 4 | 19 | 624 | 18 | 634 | 0.0 | 652 |
| MS.gene034251.t1 | AT4G00380 | 54.854 | 618 | 266 | 4 | 19 | 624 | 18 | 634 | 0.0 | 652 |
| MS.gene034251.t1 | AT4G00380 | 51.707 | 615 | 262 | 5 | 19 | 624 | 18 | 606 | 0.0 | 604 |
| MS.gene034251.t1 | AT1G80790 | 54.032 | 620 | 268 | 9 | 19 | 625 | 19 | 634 | 0.0 | 597 |
| MS.gene034251.t1 | AT1G80790 | 54.032 | 620 | 268 | 9 | 19 | 625 | 19 | 634 | 0.0 | 597 |
| MS.gene034251.t1 | AT3G48670 | 41.429 | 630 | 344 | 11 | 16 | 625 | 21 | 645 | 4.27e-149 | 446 |
| MS.gene034251.t1 | AT3G48670 | 41.429 | 630 | 344 | 11 | 16 | 625 | 21 | 645 | 4.27e-149 | 446 |
| MS.gene034251.t1 | AT3G48670 | 41.429 | 630 | 344 | 11 | 16 | 625 | 21 | 645 | 4.27e-149 | 446 |
| MS.gene034251.t1 | AT1G80790 | 53.863 | 453 | 194 | 7 | 19 | 459 | 19 | 468 | 9.55e-148 | 436 |
| MS.gene034251.t1 | AT3G12550 | 36.220 | 635 | 370 | 11 | 16 | 621 | 5 | 633 | 1.44e-116 | 361 |
| MS.gene034251.t1 | AT3G12550 | 36.164 | 636 | 370 | 11 | 16 | 621 | 5 | 634 | 8.65e-116 | 359 |
| MS.gene034251.t1 | AT3G12550 | 36.164 | 636 | 370 | 11 | 16 | 621 | 5 | 634 | 8.65e-116 | 359 |
| MS.gene034251.t1 | AT3G12550 | 36.164 | 636 | 370 | 11 | 16 | 621 | 5 | 634 | 8.65e-116 | 359 |
| MS.gene034251.t1 | AT1G13790 | 38.704 | 540 | 302 | 7 | 93 | 615 | 197 | 724 | 6.04e-109 | 345 |
| MS.gene034251.t1 | AT1G13790 | 38.272 | 81 | 50 | 0 | 12 | 92 | 3 | 83 | 2.04e-12 | 70.9 |
| MS.gene034251.t1 | AT1G13790 | 38.704 | 540 | 302 | 7 | 93 | 615 | 197 | 724 | 6.04e-109 | 345 |
| MS.gene034251.t1 | AT1G13790 | 38.272 | 81 | 50 | 0 | 12 | 92 | 3 | 83 | 2.04e-12 | 70.9 |
| MS.gene034251.t1 | AT3G12550 | 33.874 | 555 | 333 | 10 | 16 | 542 | 5 | 553 | 1.05e-88 | 287 |
| MS.gene034251.t1 | AT5G59390 | 34.381 | 541 | 307 | 16 | 113 | 624 | 30 | 551 | 1.53e-79 | 262 |
| MS.gene034251.t1 | AT5G59390 | 34.381 | 541 | 307 | 16 | 113 | 624 | 30 | 551 | 1.53e-79 | 262 |
| MS.gene034251.t1 | AT5G59390 | 34.381 | 541 | 307 | 16 | 113 | 624 | 30 | 551 | 1.53e-79 | 262 |
| MS.gene034251.t1 | AT5G59390 | 34.066 | 546 | 307 | 17 | 113 | 624 | 30 | 556 | 2.99e-77 | 256 |
| MS.gene034251.t1 | AT5G59390 | 34.066 | 546 | 307 | 17 | 113 | 624 | 30 | 556 | 2.99e-77 | 256 |
| MS.gene034251.t1 | AT4G01180 | 33.959 | 533 | 299 | 15 | 113 | 614 | 28 | 538 | 5.23e-74 | 248 |
| MS.gene034251.t1 | AT4G01780 | 33.406 | 458 | 205 | 8 | 170 | 625 | 111 | 470 | 4.83e-65 | 221 |
| MS.gene034251.t1 | AT3G29375 | 44.776 | 201 | 105 | 2 | 424 | 624 | 32 | 226 | 2.94e-46 | 163 |
| MS.gene034251.t1 | AT3G29375 | 44.776 | 201 | 105 | 2 | 424 | 624 | 155 | 349 | 1.34e-44 | 163 |
| MS.gene034251.t1 | AT3G29375 | 41.406 | 128 | 68 | 3 | 424 | 551 | 32 | 152 | 1.39e-18 | 84.3 |
| MS.gene034251.t1 | AT2G16490 | 43.243 | 74 | 42 | 0 | 551 | 624 | 75 | 148 | 8.17e-15 | 73.6 |
Find 138 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTGTAACCACTTTAAA+AGG | 0.096361 | 4.1:+88674706 | None:intergenic |
| CAACTGAAGGATCTTGTTTA+AGG | 0.147603 | 4.1:+88675446 | None:intergenic |
| CTGTCGAGCTTTGCTCTTTA+TGG | 0.200712 | 4.1:-88674759 | MS.gene034251:CDS |
| CTTGGTGCCAATATTAGTTT+TGG | 0.243764 | 4.1:+88674861 | None:intergenic |
| ATGGAAATTGAAGAACTAAA+AGG | 0.270508 | 4.1:-88675390 | MS.gene034251:CDS |
| GGAAGACAAAATAGAAAGTT+TGG | 0.287888 | 4.1:-88675286 | MS.gene034251:CDS |
| ATAAGCAAATCACATGATTC+TGG | 0.315654 | 4.1:-88677082 | MS.gene034251:CDS |
| TACAAAGTGAAGAACAATAA+TGG | 0.316359 | 4.1:-88677370 | MS.gene034251:CDS |
| TTGGAATTCCATGGACTTGC+AGG | 0.324273 | 4.1:-88676894 | MS.gene034251:CDS |
| AATAGAAAGTTTGGAAGATA+TGG | 0.336318 | 4.1:-88675277 | MS.gene034251:CDS |
| TTCTGATGAAGCTGGGATAA+AGG | 0.336391 | 4.1:-88674782 | MS.gene034251:CDS |
| AAAGCAGGAATTCAAATATA+AGG | 0.338005 | 4.1:-88677314 | MS.gene034251:CDS |
| TGTGGAACTTCAAAGAAAAT+AGG | 0.338398 | 4.1:-88674434 | MS.gene034251:CDS |
| ACTGGTGCCAAAACTAATAT+TGG | 0.346735 | 4.1:-88674868 | MS.gene034251:CDS |
| AGAAAAGTTGAGTAATGAAT+TGG | 0.351658 | 4.1:-88676426 | MS.gene034251:CDS |
| CCTGTAGTTCATCATTGCTT+TGG | 0.360050 | 4.1:+88675220 | None:intergenic |
| CAGGACAGTTCAGAGATTTA+CGG | 0.365740 | 4.1:-88676875 | MS.gene034251:CDS |
| TGAGGAGGTACGAAGGATAT+TGG | 0.370766 | 4.1:-88676456 | MS.gene034251:CDS |
| CGATCAAGAGAGGCAGAAAC+TGG | 0.373050 | 4.1:-88676342 | MS.gene034251:CDS |
| CCAGCCCTTAACTCTTCATA+TGG | 0.378071 | 4.1:+88677397 | None:intergenic |
| AGAAACCATATGAAGAGTTA+AGG | 0.381900 | 4.1:-88677402 | MS.gene034251:CDS |
| TCTGCTCCTTTGAGGCCAAC+TGG | 0.386894 | 4.1:+88675650 | None:intergenic |
| CCAGTGGTGGGTATACTGTT+TGG | 0.391573 | 4.1:-88674461 | MS.gene034251:CDS |
| CAGTGGTGGGTATACTGTTT+GGG | 0.392443 | 4.1:-88674460 | MS.gene034251:CDS |
| ACAAAGTGAAGAACAATAAT+GGG | 0.394132 | 4.1:-88677369 | MS.gene034251:CDS |
| GATCTGTTGCAGCATGCATC+TGG | 0.396114 | 4.1:-88677292 | MS.gene034251:CDS |
| AGCTATCTTCTGCTCCTTTG+AGG | 0.404036 | 4.1:+88675642 | None:intergenic |
| GGCTGTTCATACGTTCTTGA+TGG | 0.404762 | 4.1:-88677023 | MS.gene034251:CDS |
| TTAGTACCTCACGCTTGTTT+AGG | 0.407923 | 4.1:+88676366 | None:intergenic |
| ATAATTGTCCAGGGTCGATT+GGG | 0.410920 | 4.1:-88676829 | MS.gene034251:CDS |
| GTCAAGGTCTCCCATCCTCT+TGG | 0.419346 | 4.1:+88674843 | None:intergenic |
| CAGGCTTGTTGAAGAGCAAA+AGG | 0.422308 | 4.1:-88675605 | MS.gene034251:intron |
| CTTGTTTAGGTCTCTGCTCC+AGG | 0.422956 | 4.1:+88676379 | None:intergenic |
| TGGAAATTGAAGAACTAAAA+GGG | 0.432185 | 4.1:-88675389 | MS.gene034251:CDS |
| CAGTTCAGAGATTTACGGTT+GGG | 0.434103 | 4.1:-88676870 | MS.gene034251:CDS |
| TATAATTGTCCAGGGTCGAT+TGG | 0.446459 | 4.1:-88676830 | MS.gene034251:CDS |
| ACTTCAACAATGACTGGAAT+GGG | 0.453119 | 4.1:-88676976 | MS.gene034251:CDS |
| CTGCAAGTCATGAAACATCT+TGG | 0.454930 | 4.1:-88675363 | MS.gene034251:CDS |
| GAAACCATATGAAGAGTTAA+GGG | 0.456039 | 4.1:-88677401 | MS.gene034251:CDS |
| CAGTTTCTGCCTCTCTTGAT+CGG | 0.457451 | 4.1:+88676343 | None:intergenic |
| GAAGATGATTATAATTGTCC+AGG | 0.464276 | 4.1:-88676839 | MS.gene034251:CDS |
| TCAAAGCCGGGCGAGGTACT+TGG | 0.465289 | 4.1:+88677173 | None:intergenic |
| TAGCTGATGAGAATGTCTTC+AGG | 0.469727 | 4.1:-88675624 | MS.gene034251:CDS |
| CAACTGGAGTGATTGATTCC+TGG | 0.474236 | 4.1:+88675666 | None:intergenic |
| GGTATACTGTTTGGGAGCTG+TGG | 0.476632 | 4.1:-88674452 | MS.gene034251:CDS |
| TACAAAAGCTGAAGAAGGAA+TGG | 0.478989 | 4.1:-88674542 | MS.gene034251:CDS |
| TAATATCAATCTCATTTGCC+AGG | 0.479312 | 4.1:+88676720 | None:intergenic |
| GGAAGAGATGAATTCAGAGT+TGG | 0.479922 | 4.1:-88675307 | MS.gene034251:CDS |
| ATCACTCCAGTTGGCCTCAA+AGG | 0.480055 | 4.1:-88675656 | MS.gene034251:CDS |
| AAAACAGAAGGCAAACCATC+TGG | 0.480375 | 4.1:-88677239 | MS.gene034251:CDS |
| CGAGCTTTGCTCTTTATGGC+AGG | 0.485391 | 4.1:-88674755 | MS.gene034251:CDS |
| TCCAAGTTGAGAACTACGTT+TGG | 0.494414 | 4.1:-88677129 | MS.gene034251:CDS |
| TTATAGACTTCAACAATGAC+TGG | 0.495035 | 4.1:-88676982 | MS.gene034251:CDS |
| ACAAAAGCTGAAGAAGGAAT+GGG | 0.498002 | 4.1:-88674541 | MS.gene034251:CDS |
| ATCTCAACAAGATGCAGTAT+AGG | 0.500867 | 4.1:-88676688 | MS.gene034251:CDS |
| TCTCTGTAACCACTTTAAAA+GGG | 0.509171 | 4.1:+88674707 | None:intergenic |
| ACTTAGGTGTCCGTATTGCT+CGG | 0.510947 | 4.1:-88677344 | MS.gene034251:CDS |
| AACTACGTTTGGCCGTGGAC+AGG | 0.513586 | 4.1:-88677118 | MS.gene034251:CDS |
| GAATTTAACGCTTATTGTCA+AGG | 0.513944 | 4.1:-88675247 | MS.gene034251:CDS |
| TAATATTGGCACCAAGAGGA+TGG | 0.524177 | 4.1:-88674854 | MS.gene034251:CDS |
| TATGTCCTTGAGTAGGATGC+TGG | 0.524242 | 4.1:-88676651 | MS.gene034251:CDS |
| CCAAACAGTATACCCACCAC+TGG | 0.525403 | 4.1:+88674461 | None:intergenic |
| CCAAAGCAATGATGAACTAC+AGG | 0.526461 | 4.1:-88675220 | MS.gene034251:CDS |
| CTTAAACAAGATCCTTCAGT+TGG | 0.526740 | 4.1:-88675445 | MS.gene034251:CDS |
| ACGTAGTTCTCAACTTGGAC+AGG | 0.526836 | 4.1:+88677133 | None:intergenic |
| GCCAAACGTAGTTCTCAACT+TGG | 0.528155 | 4.1:+88677128 | None:intergenic |
| TGAACTGTCCTGCAAGTCCA+TGG | 0.528763 | 4.1:+88676886 | None:intergenic |
| AAATAGCATTGTGGAAAACC+TGG | 0.534545 | 4.1:-88676738 | MS.gene034251:CDS |
| GACTTCAACAATGACTGGAA+TGG | 0.535886 | 4.1:-88676977 | MS.gene034251:CDS |
| TCAGCCTTCCTTTGTTGCGA+AGG | 0.537542 | 4.1:+88676801 | None:intergenic |
| CTTAGGTGTCCGTATTGCTC+GGG | 0.537566 | 4.1:-88677343 | MS.gene034251:CDS |
| ATCTGGAGTAGGCAAAGGTT+CGG | 0.537904 | 4.1:-88677275 | MS.gene034251:CDS |
| GATGGGAGACCTTGACCAGA+AGG | 0.539667 | 4.1:-88674836 | MS.gene034251:CDS |
| GTTCATACGTTCTTGATGGA+TGG | 0.543612 | 4.1:-88677019 | MS.gene034251:CDS |
| AAATGAGGAAGCTTGATACC+TGG | 0.545605 | 4.1:-88676397 | MS.gene034251:CDS |
| TCCAAACTACCAGAGAGAAA+AGG | 0.547284 | 4.1:-88675475 | MS.gene034251:intron |
| TTGAGAACTACGTTTGGCCG+TGG | 0.547439 | 4.1:-88677123 | MS.gene034251:CDS |
| GAAACTACAAAAGCTGAAGA+AGG | 0.547462 | 4.1:-88674547 | MS.gene034251:CDS |
| CCATATGAAGAGTTAAGGGC+TGG | 0.547915 | 4.1:-88677397 | MS.gene034251:CDS |
| AAACAGAAGCACAAAACAGA+AGG | 0.549041 | 4.1:-88677251 | MS.gene034251:CDS |
| TGTCCTTCCAGAAAGACTCC+AGG | 0.550329 | 4.1:-88675684 | MS.gene034251:intron |
| ATGCAAGTGAGCTTGAGAAA+TGG | 0.551886 | 4.1:-88676946 | MS.gene034251:CDS |
| ACGACAGCTAAGGTCAAAGC+CGG | 0.553034 | 4.1:+88677160 | None:intergenic |
| ATTTGCTAAGTACAAACCAT+TGG | 0.554128 | 4.1:-88677044 | MS.gene034251:CDS |
| AGCAGACCAAGTACCTCGCC+CGG | 0.554305 | 4.1:-88677179 | MS.gene034251:CDS |
| ACTGGAAGAGGACAAGAAGA+AGG | 0.555312 | 4.1:-88676324 | MS.gene034251:intron |
| TGATTCTGGATACTTGCAAA+AGG | 0.555382 | 4.1:-88677068 | MS.gene034251:CDS |
| AGTTCTCAACTTGGACAGGT+TGG | 0.556864 | 4.1:+88677137 | None:intergenic |
| GCTAAGGTCAAAGCCGGGCG+AGG | 0.561717 | 4.1:+88677166 | None:intergenic |
| AGAAGTGATCACTTATATTG+TGG | 0.563683 | 4.1:-88674397 | MS.gene034251:CDS |
| TTGCAGCATGCATCTGGAGT+AGG | 0.566883 | 4.1:-88677286 | MS.gene034251:CDS |
| TAAGCGCAAGAGAGGAGGAT+AGG | 0.567186 | 4.1:-88674358 | None:intergenic |
| CAGGAATCAATCACTCCAGT+TGG | 0.571555 | 4.1:-88675665 | MS.gene034251:CDS |
| ATGATGAACTACAGGAAGCT+CGG | 0.574508 | 4.1:-88675212 | MS.gene034251:CDS |
| AGAACAATAATGGGACACTT+AGG | 0.574673 | 4.1:-88677360 | MS.gene034251:CDS |
| AGGTACTCCCCAATCGACCC+TGG | 0.579229 | 4.1:+88676821 | None:intergenic |
| AAAACTTTGCAAGAGCCAGA+TGG | 0.582131 | 4.1:+88677224 | None:intergenic |
| AACGAGTACAACCCCAGTGG+TGG | 0.585705 | 4.1:-88674474 | MS.gene034251:CDS |
| AATATTGGCACCAAGAGGAT+GGG | 0.586149 | 4.1:-88674853 | MS.gene034251:CDS |
| GACAGGTTGGACGACAGCTA+AGG | 0.586592 | 4.1:+88677150 | None:intergenic |
| AGTACCTTCGCAACAAAGGA+AGG | 0.587192 | 4.1:-88676805 | MS.gene034251:CDS |
| AGAGAGGCAGAAACTGGAAG+AGG | 0.587763 | 4.1:-88676336 | MS.gene034251:CDS |
| AAAATGTGAAGAACTCAGCT+TGG | 0.590276 | 4.1:-88674732 | MS.gene034251:CDS |
| CAAACAGTATACCCACCACT+GGG | 0.590617 | 4.1:+88674462 | None:intergenic |
| GGGGAGTACCTTCGCAACAA+AGG | 0.594476 | 4.1:-88676809 | MS.gene034251:CDS |
| CTCCTCCAGCATCCTACTCA+AGG | 0.596087 | 4.1:+88676646 | None:intergenic |
| CAACTTAAGCGCAAGAGAGG+AGG | 0.597370 | 4.1:-88674363 | MS.gene034251:CDS |
| GATCAGTGAGTCTGAGATCG+AGG | 0.600157 | 4.1:-88677434 | MS.gene034251:CDS |
| AAGCAACTTAAGCGCAAGAG+AGG | 0.605662 | 4.1:-88674366 | MS.gene034251:CDS |
| CGACAGCTAAGGTCAAAGCC+GGG | 0.609400 | 4.1:+88677161 | None:intergenic |
| CATGCATCTGGAGTAGGCAA+AGG | 0.611854 | 4.1:-88677280 | MS.gene034251:CDS |
| AGAAGACTATGTCCTTGAGT+AGG | 0.612892 | 4.1:-88676658 | MS.gene034251:CDS |
| ACAGTTCAGAGATTTACGGT+TGG | 0.615927 | 4.1:-88676871 | MS.gene034251:CDS |
| GAACTTCAAAGAAAATAGGA+AGG | 0.621964 | 4.1:-88674430 | MS.gene034251:CDS |
| AGGTACTAACCGATCAAGAG+AGG | 0.623269 | 4.1:-88676352 | MS.gene034251:CDS |
| AAGATGATTATAATTGTCCA+GGG | 0.627300 | 4.1:-88676838 | MS.gene034251:CDS |
| CATGCAGCGTAAAGCTCGTG+AGG | 0.627326 | 4.1:-88676474 | MS.gene034251:CDS |
| TTGACAAGTATGCCTGTCCA+CGG | 0.630837 | 4.1:+88677106 | None:intergenic |
| AAACTACCAGAGAGAAAAGG+AGG | 0.630982 | 4.1:-88675472 | MS.gene034251:intron |
| TAATTGTCCAGGGTCGATTG+GGG | 0.634670 | 4.1:-88676828 | MS.gene034251:CDS |
| TGGTTTGAGACTAAACGTTG+TGG | 0.637320 | 4.1:-88676926 | MS.gene034251:CDS |
| GTCCTTGAGTAGGATGCTGG+AGG | 0.639598 | 4.1:-88676648 | MS.gene034251:CDS |
| GGGTTAAATGAAATGCTGAC+TGG | 0.640070 | 4.1:-88674886 | MS.gene034251:CDS |
| TTCGCAACAAAGGAAGGCTG+AGG | 0.640972 | 4.1:-88676799 | MS.gene034251:CDS |
| AAGCTCGTGAGGAGGTACGA+AGG | 0.645630 | 4.1:-88676463 | MS.gene034251:CDS |
| AAGAACGTATGAACAGCCAA+TGG | 0.648751 | 4.1:+88677028 | None:intergenic |
| CTACCAGAGAGAAAAGGAGG+AGG | 0.652051 | 4.1:-88675469 | MS.gene034251:intron |
| TCTTGGAGATCAAGATGATG+CGG | 0.666276 | 4.1:-88675346 | MS.gene034251:CDS |
| ACGAGTACAACCCCAGTGGT+GGG | 0.666856 | 4.1:-88674473 | MS.gene034251:CDS |
| CAAAAGCTGAAGAAGGAATG+GGG | 0.672943 | 4.1:-88674540 | MS.gene034251:CDS |
| TCAAAGCAGAAATAGCATTG+TGG | 0.673917 | 4.1:-88676747 | MS.gene034251:CDS |
| AAACTAATATTGGCACCAAG+AGG | 0.676823 | 4.1:-88674858 | MS.gene034251:CDS |
| GCAGCGTAAAGCTCGTGAGG+AGG | 0.682044 | 4.1:-88676471 | MS.gene034251:CDS |
| CAGAGACCTAAACAAGCGTG+AGG | 0.704526 | 4.1:-88676372 | MS.gene034251:CDS |
| CTTGATGGATGGTAACTGCG+TGG | 0.712841 | 4.1:-88677008 | MS.gene034251:CDS |
| TACAGAGAATGATAACCATG+TGG | 0.726744 | 4.1:-88674692 | MS.gene034251:intron |
| AAACAGTATACCCACCACTG+GGG | 0.786062 | 4.1:+88674463 | None:intergenic |
| GTTAACGAGTACAACCCCAG+TGG | 0.812173 | 4.1:-88674477 | MS.gene034251:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCAATGTAATATATA+TGG | - | chr4.1:88675869-88675888 | MS.gene034251:intron | 10.0% |
| !! | AAATAGTGTAATAATTAACA+TGG | - | chr4.1:88677207-88677226 | MS.gene034251:CDS | 15.0% |
| !!! | AGTAACATTTCTTTTTATAT+AGG | + | chr4.1:88676688-88676707 | None:intergenic | 15.0% |
| !!! | CAGTTAAAAATATTTGAAAT+GGG | + | chr4.1:88675558-88675577 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCTATTGTTTTA+GGG | - | chr4.1:88676915-88676934 | MS.gene034251:CDS | 15.0% |
| !!! | TTTCAAATTTCTATTGTTTT+AGG | - | chr4.1:88676914-88676933 | MS.gene034251:CDS | 15.0% |
| !! | AAATTTGAAAAAAATGAGAG+GGG | + | chr4.1:88676904-88676923 | None:intergenic | 20.0% |
| !! | AGAAATTTGAAAAAAATGAG+AGG | + | chr4.1:88676906-88676925 | None:intergenic | 20.0% |
| !! | GAAATTTGAAAAAAATGAGA+GGG | + | chr4.1:88676905-88676924 | None:intergenic | 20.0% |
| !! | GCAGTTAAAAATATTTGAAA+TGG | + | chr4.1:88675559-88675578 | None:intergenic | 20.0% |
| !!! | AAAAAAATGAGACATTTTTG+TGG | + | chr4.1:88675313-88675332 | None:intergenic | 20.0% |
| !!! | CACTTTTTTATTCAAATCAA+GGG | + | chr4.1:88675735-88675754 | None:intergenic | 20.0% |
| !!! | TCAAATTTCTATTGTTTTAG+GGG | - | chr4.1:88676916-88676935 | MS.gene034251:CDS | 20.0% |
| ! | AAAGCAGGAATTCAAATATA+AGG | - | chr4.1:88674508-88674527 | MS.gene034251:CDS | 25.0% |
| ! | AAATGAATCCCAACTTTAAT+TGG | - | chr4.1:88675783-88675802 | MS.gene034251:intron | 25.0% |
| ! | AAGATGATTATAATTGTCCA+GGG | - | chr4.1:88674984-88675003 | MS.gene034251:intron | 25.0% |
| ! | AATAGAAAGTTTGGAAGATA+TGG | - | chr4.1:88676545-88676564 | MS.gene034251:intron | 25.0% |
| ! | ACAAAGTGAAGAACAATAAT+GGG | - | chr4.1:88674453-88674472 | MS.gene034251:CDS | 25.0% |
| ! | ACATGGTAATATTGTTGTAT+TGG | - | chr4.1:88677224-88677243 | MS.gene034251:CDS | 25.0% |
| ! | AGAAAAGTTGAGTAATGAAT+TGG | - | chr4.1:88675396-88675415 | MS.gene034251:CDS | 25.0% |
| ! | ATGAATTGGATGAAAAAATG+AGG | - | chr4.1:88675410-88675429 | MS.gene034251:CDS | 25.0% |
| ! | ATGGAAATTGAAGAACTAAA+AGG | - | chr4.1:88676432-88676451 | MS.gene034251:CDS | 25.0% |
| ! | ATTTCAACTCTACATAAATG+AGG | + | chr4.1:88675909-88675928 | None:intergenic | 25.0% |
| ! | TACAAAGTGAAGAACAATAA+TGG | - | chr4.1:88674452-88674471 | MS.gene034251:CDS | 25.0% |
| ! | TGGAAATTGAAGAACTAAAA+GGG | - | chr4.1:88676433-88676452 | MS.gene034251:CDS | 25.0% |
| !! | AAATCTTATTTCCTAAAGAG+AGG | + | chr4.1:88676830-88676849 | None:intergenic | 25.0% |
| !! | ATTACACTATTTCTCTATTG+AGG | + | chr4.1:88677199-88677218 | None:intergenic | 25.0% |
| !! | TTCCATTTCCAATTTTTGTT+TGG | + | chr4.1:88676418-88676437 | None:intergenic | 25.0% |
| !! | TTGCCTTATTGTATAGAATA+GGG | - | chr4.1:88675259-88675278 | MS.gene034251:CDS | 25.0% |
| !! | TTTGCCTTATTGTATAGAAT+AGG | - | chr4.1:88675258-88675277 | MS.gene034251:CDS | 25.0% |
| !!! | AAAAGCTTTTGATTATTGTG+AGG | - | chr4.1:88675846-88675865 | MS.gene034251:intron | 25.0% |
| !!! | GCACTTTTTTATTCAAATCA+AGG | + | chr4.1:88675736-88675755 | None:intergenic | 25.0% |
| AAAAAAGGATTGGAATTCCA+TGG | - | chr4.1:88674919-88674938 | MS.gene034251:intron | 30.0% | |
| ACTAGATGCCAAACAAAAAT+TGG | - | chr4.1:88676407-88676426 | MS.gene034251:CDS | 30.0% | |
| ACTGATGATTCAAAGTCTTA+AGG | + | chr4.1:88676079-88676098 | None:intergenic | 30.0% | |
| AGAAACCATATGAAGAGTTA+AGG | - | chr4.1:88674420-88674439 | MS.gene034251:CDS | 30.0% | |
| AGAAGTGATCACTTATATTG+TGG | - | chr4.1:88677425-88677444 | MS.gene034251:CDS | 30.0% | |
| ATAAGCAAATCACATGATTC+TGG | - | chr4.1:88674740-88674759 | MS.gene034251:CDS | 30.0% | |
| GAAACCATATGAAGAGTTAA+GGG | - | chr4.1:88674421-88674440 | MS.gene034251:CDS | 30.0% | |
| GAACTTCAAAGAAAATAGGA+AGG | - | chr4.1:88677392-88677411 | MS.gene034251:CDS | 30.0% | |
| GAAGATGATTATAATTGTCC+AGG | - | chr4.1:88674983-88675002 | MS.gene034251:intron | 30.0% | |
| GAATTTAACGCTTATTGTCA+AGG | - | chr4.1:88676575-88676594 | MS.gene034251:intron | 30.0% | |
| GATTTGAATAACAATGTCCT+TGG | - | chr4.1:88675706-88675725 | MS.gene034251:intron | 30.0% | |
| GGAAGACAAAATAGAAAGTT+TGG | - | chr4.1:88676536-88676555 | MS.gene034251:intron | 30.0% | |
| TAATATCAATCTCATTTGCC+AGG | + | chr4.1:88675105-88675124 | None:intergenic | 30.0% | |
| TGAAGAATACACGAAGATAA+AGG | + | chr4.1:88676733-88676752 | None:intergenic | 30.0% | |
| TGCCAAACAAAAATTGGAAA+TGG | - | chr4.1:88676413-88676432 | MS.gene034251:CDS | 30.0% | |
| TGCGGCTATTAAGAAAAAAA+TGG | - | chr4.1:88676494-88676513 | MS.gene034251:intron | 30.0% | |
| TGTGGAACTTCAAAGAAAAT+AGG | - | chr4.1:88677388-88677407 | MS.gene034251:CDS | 30.0% | |
| TTATAGACTTCAACAATGAC+TGG | - | chr4.1:88674840-88674859 | MS.gene034251:CDS | 30.0% | |
| TTCAAGATAACCAACTAACA+AGG | - | chr4.1:88676749-88676768 | MS.gene034251:CDS | 30.0% | |
| TTCATTTAAAGAGAGTCAGT+AGG | + | chr4.1:88675770-88675789 | None:intergenic | 30.0% | |
| TTCCCCTATTCTATACAATA+AGG | + | chr4.1:88675265-88675284 | None:intergenic | 30.0% | |
| TTCTCTGTAACCACTTTAAA+AGG | + | chr4.1:88677119-88677138 | None:intergenic | 30.0% | |
| ! | AGAAGAAAATCTTTTCTTGC+AGG | + | chr4.1:88677024-88677043 | None:intergenic | 30.0% |
| ! | ATTTGCTAAGTACAAACCAT+TGG | - | chr4.1:88674778-88674797 | MS.gene034251:CDS | 30.0% |
| ! | GCATTTTATATATTAGTGCG+TGG | - | chr4.1:88675958-88675977 | MS.gene034251:intron | 30.0% |
| ! | GTACTCGTTAACTTCTTTTA+AGG | + | chr4.1:88677337-88677356 | None:intergenic | 30.0% |
| ! | TCTCTGTAACCACTTTAAAA+GGG | + | chr4.1:88677118-88677137 | None:intergenic | 30.0% |
| ! | TGCCTTATTGTATAGAATAG+GGG | - | chr4.1:88675260-88675279 | MS.gene034251:CDS | 30.0% |
| ! | TTTTCATAACCAAGTGAGTA+GGG | + | chr4.1:88676247-88676266 | None:intergenic | 30.0% |
| !!! | AGCACATCTGGTTTTTTTTA+TGG | + | chr4.1:88676016-88676035 | None:intergenic | 30.0% |
| !!! | CAAATTTTTTGCAAGGACAA+TGG | + | chr4.1:88675609-88675628 | None:intergenic | 30.0% |
| !!! | GACAGATCAAATTTTTTGCA+AGG | + | chr4.1:88675616-88675635 | None:intergenic | 30.0% |
| !!! | TCATTTTTTTGTCAGAGTCA+AGG | - | chr4.1:88675323-88675342 | MS.gene034251:CDS | 30.0% |
| AAAATGTGAAGAACTCAGCT+TGG | - | chr4.1:88677090-88677109 | MS.gene034251:CDS | 35.0% | |
| AAACTAATATTGGCACCAAG+AGG | - | chr4.1:88676964-88676983 | MS.gene034251:CDS | 35.0% | |
| AAATAGCATTGTGGAAAACC+TGG | - | chr4.1:88675084-88675103 | MS.gene034251:intron | 35.0% | |
| AACGTTGTGGAAAAAAGGAT+TGG | - | chr4.1:88674909-88674928 | MS.gene034251:intron | 35.0% | |
| AATCTATGCACCTTGTTAGT+TGG | + | chr4.1:88676762-88676781 | None:intergenic | 35.0% | |
| ACAAAAGCTGAAGAAGGAAT+GGG | - | chr4.1:88677281-88677300 | MS.gene034251:CDS | 35.0% | |
| ACACGAAGATAAAGGTTAGA+AGG | + | chr4.1:88676725-88676744 | None:intergenic | 35.0% | |
| ACTTCAACAATGACTGGAAT+GGG | - | chr4.1:88674846-88674865 | MS.gene034251:CDS | 35.0% | |
| AGCATGTAAAGGTTAGAAAG+TGG | + | chr4.1:88676049-88676068 | None:intergenic | 35.0% | |
| ATCTCAACAAGATGCAGTAT+AGG | - | chr4.1:88675134-88675153 | MS.gene034251:intron | 35.0% | |
| ATTTGATCTGTCTTTCTCTG+TGG | - | chr4.1:88675624-88675643 | MS.gene034251:CDS | 35.0% | |
| CTTAAACAAGATCCTTCAGT+TGG | - | chr4.1:88676377-88676396 | MS.gene034251:CDS | 35.0% | |
| GAAACTACAAAAGCTGAAGA+AGG | - | chr4.1:88677275-88677294 | MS.gene034251:CDS | 35.0% | |
| GACTAAACGTTGTGGAAAAA+AGG | - | chr4.1:88674904-88674923 | MS.gene034251:intron | 35.0% | |
| GATCAACCAAGAACATTAGT+AGG | + | chr4.1:88675653-88675672 | None:intergenic | 35.0% | |
| GATTTGACTAACAATGTCGT+TGG | - | chr4.1:88675675-88675694 | MS.gene034251:CDS | 35.0% | |
| GCATGTAAAGGTTAGAAAGT+GGG | + | chr4.1:88676048-88676067 | None:intergenic | 35.0% | |
| GTTCTGCTGTGAATATATTG+TGG | - | chr4.1:88676863-88676882 | MS.gene034251:CDS | 35.0% | |
| TACAAAAGCTGAAGAAGGAA+TGG | - | chr4.1:88677280-88677299 | MS.gene034251:CDS | 35.0% | |
| TACAGAGAATGATAACCATG+TGG | - | chr4.1:88677130-88677149 | MS.gene034251:CDS | 35.0% | |
| TCAAAGCAGAAATAGCATTG+TGG | - | chr4.1:88675075-88675094 | MS.gene034251:intron | 35.0% | |
| TCAGTTGAAGACATTCACAA+TGG | + | chr4.1:88676319-88676338 | None:intergenic | 35.0% | |
| TGATTCTGGATACTTGCAAA+AGG | - | chr4.1:88674754-88674773 | MS.gene034251:CDS | 35.0% | |
| TTCTAACCTTTACATGCTTG+AGG | - | chr4.1:88676051-88676070 | MS.gene034251:intron | 35.0% | |
| TTGAAGACATTCACAATGGA+TGG | + | chr4.1:88676315-88676334 | None:intergenic | 35.0% | |
| ! | AAACAGAAGCACAAAACAGA+AGG | - | chr4.1:88674571-88674590 | MS.gene034251:CDS | 35.0% |
| ! | ACTGGTGCCAAAACTAATAT+TGG | - | chr4.1:88676954-88676973 | MS.gene034251:CDS | 35.0% |
| ! | AGAACAATAATGGGACACTT+AGG | - | chr4.1:88674462-88674481 | MS.gene034251:CDS | 35.0% |
| ! | AGATTTTCTTCTGATGAAGC+TGG | - | chr4.1:88677032-88677051 | MS.gene034251:CDS | 35.0% |
| ! | AGCTTTTAGCATATAGACTC+TGG | + | chr4.1:88675833-88675852 | None:intergenic | 35.0% |
| ! | CAACTGAAGGATCTTGTTTA+AGG | + | chr4.1:88676379-88676398 | None:intergenic | 35.0% |
| ! | CTTCACAATGCTTTTGTTGA+AGG | - | chr4.1:88675208-88675227 | MS.gene034251:CDS | 35.0% |
| ! | CTTTTCATAACCAAGTGAGT+AGG | + | chr4.1:88676248-88676267 | None:intergenic | 35.0% |
| ! | GATTTTCTTCTGATGAAGCT+GGG | - | chr4.1:88677033-88677052 | MS.gene034251:CDS | 35.0% |
| ! | GCTTTTAGCATATAGACTCT+GGG | + | chr4.1:88675832-88675851 | None:intergenic | 35.0% |
| ! | TCTTATTTCCTAAAGAGAGG+TGG | + | chr4.1:88676827-88676846 | None:intergenic | 35.0% |
| ! | TTTTTCTTTCCCGAGCAATA+CGG | + | chr4.1:88674491-88674510 | None:intergenic | 35.0% |
| !!! | CTTGGTGCCAATATTAGTTT+TGG | + | chr4.1:88676964-88676983 | None:intergenic | 35.0% |
| AAAACAGAAGGCAAACCATC+TGG | - | chr4.1:88674583-88674602 | MS.gene034251:intron | 40.0% | |
| AAAACTTTGCAAGAGCCAGA+TGG | + | chr4.1:88674601-88674620 | None:intergenic | 40.0% | |
| AAACTACCAGAGAGAAAAGG+AGG | - | chr4.1:88676350-88676369 | MS.gene034251:CDS | 40.0% | |
| AAATGAGGAAGCTTGATACC+TGG | - | chr4.1:88675425-88675444 | MS.gene034251:CDS | 40.0% | |
| AAGAACGTATGAACAGCCAA+TGG | + | chr4.1:88674797-88674816 | None:intergenic | 40.0% | |
| AATATTGGCACCAAGAGGAT+GGG | - | chr4.1:88676969-88676988 | MS.gene034251:CDS | 40.0% | |
| ACAGTTCAGAGATTTACGGT+TGG | - | chr4.1:88674951-88674970 | MS.gene034251:intron | 40.0% | |
| AGAAGACTATGTCCTTGAGT+AGG | - | chr4.1:88675164-88675183 | MS.gene034251:intron | 40.0% | |
| AGGCATTCACAAAAACCTTC+TGG | + | chr4.1:88677004-88677023 | None:intergenic | 40.0% | |
| ATAATTGTCCAGGGTCGATT+GGG | - | chr4.1:88674993-88675012 | MS.gene034251:intron | 40.0% | |
| ATGATGAACTACAGGAAGCT+CGG | - | chr4.1:88676610-88676629 | MS.gene034251:intron | 40.0% | |
| ATGCAAGTGAGCTTGAGAAA+TGG | - | chr4.1:88674876-88674895 | MS.gene034251:CDS | 40.0% | |
| ATTCAAATCAAGGGCAACCA+AGG | + | chr4.1:88675726-88675745 | None:intergenic | 40.0% | |
| CAAAAGCTGAAGAAGGAATG+GGG | - | chr4.1:88677282-88677301 | MS.gene034251:CDS | 40.0% | |
| CAGGACAGTTCAGAGATTTA+CGG | - | chr4.1:88674947-88674966 | MS.gene034251:intron | 40.0% | |
| CAGTTCAGAGATTTACGGTT+GGG | - | chr4.1:88674952-88674971 | MS.gene034251:intron | 40.0% | |
| CCAAAGCAATGATGAACTAC+AGG | - | chr4.1:88676602-88676621 | MS.gene034251:intron | 40.0% | |
| CCTGTAGTTCATCATTGCTT+TGG | + | chr4.1:88676605-88676624 | None:intergenic | 40.0% | |
| CTGCAAGTCATGAAACATCT+TGG | - | chr4.1:88676459-88676478 | MS.gene034251:CDS | 40.0% | |
| GACTTCAACAATGACTGGAA+TGG | - | chr4.1:88674845-88674864 | MS.gene034251:CDS | 40.0% | |
| GATTATCTCCACCTCTCTTT+AGG | - | chr4.1:88676816-88676835 | MS.gene034251:CDS | 40.0% | |
| GCTTTATGGTACATACCACA+TGG | + | chr4.1:88677148-88677167 | None:intergenic | 40.0% | |
| GGAAGAGATGAATTCAGAGT+TGG | - | chr4.1:88676515-88676534 | MS.gene034251:intron | 40.0% | |
| GGGGAAAAAAACACTTGCAT+TGG | - | chr4.1:88675279-88675298 | MS.gene034251:CDS | 40.0% | |
| GGGTTAAATGAAATGCTGAC+TGG | - | chr4.1:88676936-88676955 | MS.gene034251:CDS | 40.0% | |
| GTGAATGTCTTCAACTGATG+TGG | - | chr4.1:88676321-88676340 | MS.gene034251:intron | 40.0% | |
| GTGGAAGGCCAATTAAAGTT+GGG | + | chr4.1:88675794-88675813 | None:intergenic | 40.0% | |
| GTTCATACGTTCTTGATGGA+TGG | - | chr4.1:88674803-88674822 | MS.gene034251:CDS | 40.0% | |
| TAATATTGGCACCAAGAGGA+TGG | - | chr4.1:88676968-88676987 | MS.gene034251:CDS | 40.0% | |
| TACGCAAAAAACACAGAGCA+TGG | + | chr4.1:88677170-88677189 | None:intergenic | 40.0% | |
| TAGCTGATGAGAATGTCTTC+AGG | - | chr4.1:88676198-88676217 | MS.gene034251:intron | 40.0% | |
| TATAATTGTCCAGGGTCGAT+TGG | - | chr4.1:88674992-88675011 | MS.gene034251:intron | 40.0% | |
| TCACAAAAACCTTCTGGTCA+AGG | + | chr4.1:88676998-88677017 | None:intergenic | 40.0% | |
| TCCAAACTACCAGAGAGAAA+AGG | - | chr4.1:88676347-88676366 | MS.gene034251:CDS | 40.0% | |
| TCTTGGAGATCAAGATGATG+CGG | - | chr4.1:88676476-88676495 | MS.gene034251:CDS | 40.0% | |
| TGGTCTCCTACTAATGTTCT+TGG | - | chr4.1:88675644-88675663 | MS.gene034251:CDS | 40.0% | |
| TGTGGAAGGCCAATTAAAGT+TGG | + | chr4.1:88675795-88675814 | None:intergenic | 40.0% | |
| TTAGTACCTCACGCTTGTTT+AGG | + | chr4.1:88675459-88675478 | None:intergenic | 40.0% | |
| TTCTGATGAAGCTGGGATAA+AGG | - | chr4.1:88677040-88677059 | MS.gene034251:CDS | 40.0% | |
| ! | AAACACAGAGCATGGCTTTA+TGG | + | chr4.1:88677162-88677181 | None:intergenic | 40.0% |
| ! | ATTGATTCCTGGAGTCTTTC+TGG | + | chr4.1:88676148-88676167 | None:intergenic | 40.0% |
| ! | TCCAAGTTGAGAACTACGTT+TGG | - | chr4.1:88674693-88674712 | MS.gene034251:CDS | 40.0% |
| ! | TCCTTTTCTCTCTGGTAGTT+TGG | + | chr4.1:88676351-88676370 | None:intergenic | 40.0% |
| ! | TGGCTCTTGCAAAGTTTTTG+AGG | - | chr4.1:88674603-88674622 | MS.gene034251:intron | 40.0% |
| ! | TGGTTTGAGACTAAACGTTG+TGG | - | chr4.1:88674896-88674915 | MS.gene034251:intron | 40.0% |
| !! | TAGACTCTGGGACAAATTAG+CGG | + | chr4.1:88675820-88675839 | None:intergenic | 40.0% |
| !!! | CTAGTTGCTTTTCCAACTGA+AGG | + | chr4.1:88676392-88676411 | None:intergenic | 40.0% |
| AAACAGTATACCCACCACTG+GGG | + | chr4.1:88677362-88677381 | None:intergenic | 45.0% | |
| AAAGGTTTGCCCTACTCACT+TGG | - | chr4.1:88676235-88676254 | MS.gene034251:intron | 45.0% | |
| AAGCAACTTAAGCGCAAGAG+AGG | - | chr4.1:88677456-88677475 | MS.gene034251:CDS | 45.0% | |
| AAGGCTCCTCAAGCATGTAA+AGG | + | chr4.1:88676060-88676079 | None:intergenic | 45.0% | |
| ACGTAGTTCTCAACTTGGAC+AGG | + | chr4.1:88674692-88674711 | None:intergenic | 45.0% | |
| ACTGGAAGAGGACAAGAAGA+AGG | - | chr4.1:88675498-88675517 | MS.gene034251:intron | 45.0% | |
| ACTTAGGTGTCCGTATTGCT+CGG | - | chr4.1:88674478-88674497 | MS.gene034251:CDS | 45.0% | |
| AGCTATCTTCTGCTCCTTTG+AGG | + | chr4.1:88676183-88676202 | None:intergenic | 45.0% | |
| AGGTACTAACCGATCAAGAG+AGG | - | chr4.1:88675470-88675489 | MS.gene034251:intron | 45.0% | |
| AGTACCTTCGCAACAAAGGA+AGG | - | chr4.1:88675017-88675036 | MS.gene034251:intron | 45.0% | |
| AGTTCTCAACTTGGACAGGT+TGG | + | chr4.1:88674688-88674707 | None:intergenic | 45.0% | |
| ATTCCTGGAGTCTTTCTGGA+AGG | + | chr4.1:88676144-88676163 | None:intergenic | 45.0% | |
| CAAACAGTATACCCACCACT+GGG | + | chr4.1:88677363-88677382 | None:intergenic | 45.0% | |
| CAGGAATCAATCACTCCAGT+TGG | - | chr4.1:88676157-88676176 | MS.gene034251:intron | 45.0% | |
| CAGTTTCTGCCTCTCTTGAT+CGG | + | chr4.1:88675482-88675501 | None:intergenic | 45.0% | |
| CCAGCCCTTAACTCTTCATA+TGG | + | chr4.1:88674428-88674447 | None:intergenic | 45.0% | |
| CCATATGAAGAGTTAAGGGC+TGG | - | chr4.1:88674425-88674444 | MS.gene034251:CDS | 45.0% | |
| CTGTCGAGCTTTGCTCTTTA+TGG | - | chr4.1:88677063-88677082 | MS.gene034251:CDS | 45.0% | |
| GCCAAACGTAGTTCTCAACT+TGG | + | chr4.1:88674697-88674716 | None:intergenic | 45.0% | |
| GGCTGTTCATACGTTCTTGA+TGG | - | chr4.1:88674799-88674818 | MS.gene034251:CDS | 45.0% | |
| GGTGGAGATAATCTTCATGC+AGG | + | chr4.1:88676809-88676828 | None:intergenic | 45.0% | |
| TAATTGTCCAGGGTCGATTG+GGG | - | chr4.1:88674994-88675013 | MS.gene034251:intron | 45.0% | |
| TATGTCCTTGAGTAGGATGC+TGG | - | chr4.1:88675171-88675190 | MS.gene034251:intron | 45.0% | |
| TTGACAAGTATGCCTGTCCA+CGG | + | chr4.1:88674719-88674738 | None:intergenic | 45.0% | |
| TTGCTCGGGAAAGAAAAAGC+AGG | - | chr4.1:88674493-88674512 | MS.gene034251:CDS | 45.0% | |
| TTGGAATTCCATGGACTTGC+AGG | - | chr4.1:88674928-88674947 | MS.gene034251:intron | 45.0% | |
| ! | ATCTGGAGTAGGCAAAGGTT+CGG | - | chr4.1:88674547-88674566 | MS.gene034251:CDS | 45.0% |
| ! | CAACTGGAGTGATTGATTCC+TGG | + | chr4.1:88676159-88676178 | None:intergenic | 45.0% |
| ! | GGGATATCAGAAAGCACATC+TGG | + | chr4.1:88676028-88676047 | None:intergenic | 45.0% |
| ! | TGAGGAGGTACGAAGGATAT+TGG | - | chr4.1:88675366-88675385 | MS.gene034251:CDS | 45.0% |
| !! | AGACTCTGGGACAAATTAGC+GGG | + | chr4.1:88675819-88675838 | None:intergenic | 45.0% |
| !! | AGCTTGGCACCCTTTTAAAG+TGG | - | chr4.1:88677106-88677125 | MS.gene034251:CDS | 45.0% |
| !! | CAGGCTTGTTGAAGAGCAAA+AGG | - | chr4.1:88676217-88676236 | MS.gene034251:intron | 45.0% |
| !! | CAGTGGTGGGTATACTGTTT+GGG | - | chr4.1:88677362-88677381 | MS.gene034251:CDS | 45.0% |
| ACGACAGCTAAGGTCAAAGC+CGG | + | chr4.1:88674665-88674684 | None:intergenic | 50.0% | |
| AGAGAGGCAGAAACTGGAAG+AGG | - | chr4.1:88675486-88675505 | MS.gene034251:intron | 50.0% | |
| CAACTTAAGCGCAAGAGAGG+AGG | - | chr4.1:88677459-88677478 | MS.gene034251:CDS | 50.0% | |
| CAGAGACCTAAACAAGCGTG+AGG | - | chr4.1:88675450-88675469 | MS.gene034251:CDS | 50.0% | |
| CCAAACAGTATACCCACCAC+TGG | + | chr4.1:88677364-88677383 | None:intergenic | 50.0% | |
| CGAGCTTTGCTCTTTATGGC+AGG | - | chr4.1:88677067-88677086 | MS.gene034251:CDS | 50.0% | |
| CGATCAAGAGAGGCAGAAAC+TGG | - | chr4.1:88675480-88675499 | MS.gene034251:intron | 50.0% | |
| CTACCAGAGAGAAAAGGAGG+AGG | - | chr4.1:88676353-88676372 | MS.gene034251:CDS | 50.0% | |
| CTTAGGTGTCCGTATTGCTC+GGG | - | chr4.1:88674479-88674498 | MS.gene034251:CDS | 50.0% | |
| CTTGTTTAGGTCTCTGCTCC+AGG | + | chr4.1:88675446-88675465 | None:intergenic | 50.0% | |
| GATCTGTTGCAGCATGCATC+TGG | - | chr4.1:88674530-88674549 | MS.gene034251:CDS | 50.0% | |
| GGTATACTGTTTGGGAGCTG+TGG | - | chr4.1:88677370-88677389 | MS.gene034251:CDS | 50.0% | |
| GTTAACGAGTACAACCCCAG+TGG | - | chr4.1:88677345-88677364 | MS.gene034251:CDS | 50.0% | |
| TCAGCCTTCCTTTGTTGCGA+AGG | + | chr4.1:88675024-88675043 | None:intergenic | 50.0% | |
| TGAACTGTCCTGCAAGTCCA+TGG | + | chr4.1:88674939-88674958 | None:intergenic | 50.0% | |
| TGTCCTTCCAGAAAGACTCC+AGG | - | chr4.1:88676138-88676157 | MS.gene034251:intron | 50.0% | |
| TTCGCAACAAAGGAAGGCTG+AGG | - | chr4.1:88675023-88675042 | MS.gene034251:intron | 50.0% | |
| TTGAGAACTACGTTTGGCCG+TGG | - | chr4.1:88674699-88674718 | MS.gene034251:CDS | 50.0% | |
| ! | ATCACTCCAGTTGGCCTCAA+AGG | - | chr4.1:88676166-88676185 | MS.gene034251:intron | 50.0% |
| ! | CATGCATCTGGAGTAGGCAA+AGG | - | chr4.1:88674542-88674561 | MS.gene034251:CDS | 50.0% |
| ! | CTTGATGGATGGTAACTGCG+TGG | - | chr4.1:88674814-88674833 | MS.gene034251:CDS | 50.0% |
| ! | GATCAGTGAGTCTGAGATCG+AGG | - | chr4.1:88674388-88674407 | MS.gene034251:CDS | 50.0% |
| ! | TTGCAGCATGCATCTGGAGT+AGG | - | chr4.1:88674536-88674555 | MS.gene034251:CDS | 50.0% |
| !! | ACAAATTAGCGGGCTGTGGA+AGG | + | chr4.1:88675809-88675828 | None:intergenic | 50.0% |
| !! | CCAGTGGTGGGTATACTGTT+TGG | - | chr4.1:88677361-88677380 | MS.gene034251:CDS | 50.0% |
| AACGAGTACAACCCCAGTGG+TGG | - | chr4.1:88677348-88677367 | MS.gene034251:CDS | 55.0% | |
| AACTACGTTTGGCCGTGGAC+AGG | - | chr4.1:88674704-88674723 | MS.gene034251:CDS | 55.0% | |
| ACGAGTACAACCCCAGTGGT+GGG | - | chr4.1:88677349-88677368 | MS.gene034251:CDS | 55.0% | |
| CATGCAGCGTAAAGCTCGTG+AGG | - | chr4.1:88675348-88675367 | MS.gene034251:CDS | 55.0% | |
| CGACAGCTAAGGTCAAAGCC+GGG | + | chr4.1:88674664-88674683 | None:intergenic | 55.0% | |
| CTCCTCCAGCATCCTACTCA+AGG | + | chr4.1:88675179-88675198 | None:intergenic | 55.0% | |
| GATGGGAGACCTTGACCAGA+AGG | - | chr4.1:88676986-88677005 | MS.gene034251:CDS | 55.0% | |
| GTCAAGGTCTCCCATCCTCT+TGG | + | chr4.1:88676982-88677001 | None:intergenic | 55.0% | |
| GTCCTTGAGTAGGATGCTGG+AGG | - | chr4.1:88675174-88675193 | MS.gene034251:intron | 55.0% | |
| ! | AAGCTCGTGAGGAGGTACGA+AGG | - | chr4.1:88675359-88675378 | MS.gene034251:CDS | 55.0% |
| ! | AGGCCTCCTCCTTTTCTCTC+TGG | + | chr4.1:88676359-88676378 | None:intergenic | 55.0% |
| ! | GACAGGTTGGACGACAGCTA+AGG | + | chr4.1:88674675-88674694 | None:intergenic | 55.0% |
| !! | GGGGAGTACCTTCGCAACAA+AGG | - | chr4.1:88675013-88675032 | MS.gene034251:intron | 55.0% |
| !! | TCTGCTCCTTTGAGGCCAAC+TGG | + | chr4.1:88676175-88676194 | None:intergenic | 55.0% |
| !! | TGGGACAAATTAGCGGGCTG+TGG | + | chr4.1:88675813-88675832 | None:intergenic | 55.0% |
| AGCAGACCAAGTACCTCGCC+CGG | - | chr4.1:88674643-88674662 | MS.gene034251:intron | 60.0% | |
| AGGTACTCCCCAATCGACCC+TGG | + | chr4.1:88675004-88675023 | None:intergenic | 60.0% | |
| GCAGCGTAAAGCTCGTGAGG+AGG | - | chr4.1:88675351-88675370 | MS.gene034251:CDS | 60.0% | |
| ! | TCAAAGCCGGGCGAGGTACT+TGG | + | chr4.1:88674652-88674671 | None:intergenic | 60.0% |
| GCTAAGGTCAAAGCCGGGCG+AGG | + | chr4.1:88674659-88674678 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 88674359 | 88677485 | 88674359 | ID=MS.gene034251 |
| chr4.1 | mRNA | 88674359 | 88677485 | 88674359 | ID=MS.gene034251.t1;Parent=MS.gene034251 |
| chr4.1 | exon | 88676615 | 88677485 | 88676615 | ID=MS.gene034251.t1.exon1;Parent=MS.gene034251.t1 |
| chr4.1 | CDS | 88676615 | 88677485 | 88676615 | ID=cds.MS.gene034251.t1;Parent=MS.gene034251.t1 |
| chr4.1 | exon | 88676325 | 88676506 | 88676325 | ID=MS.gene034251.t1.exon2;Parent=MS.gene034251.t1 |
| chr4.1 | CDS | 88676325 | 88676506 | 88676325 | ID=cds.MS.gene034251.t1;Parent=MS.gene034251.t1 |
| chr4.1 | exon | 88675606 | 88675695 | 88675606 | ID=MS.gene034251.t1.exon3;Parent=MS.gene034251.t1 |
| chr4.1 | CDS | 88675606 | 88675695 | 88675606 | ID=cds.MS.gene034251.t1;Parent=MS.gene034251.t1 |
| chr4.1 | exon | 88675197 | 88675484 | 88675197 | ID=MS.gene034251.t1.exon4;Parent=MS.gene034251.t1 |
| chr4.1 | CDS | 88675197 | 88675484 | 88675197 | ID=cds.MS.gene034251.t1;Parent=MS.gene034251.t1 |
| chr4.1 | exon | 88674693 | 88674908 | 88674693 | ID=MS.gene034251.t1.exon5;Parent=MS.gene034251.t1 |
| chr4.1 | CDS | 88674693 | 88674908 | 88674693 | ID=cds.MS.gene034251.t1;Parent=MS.gene034251.t1 |
| chr4.1 | exon | 88674359 | 88674592 | 88674359 | ID=MS.gene034251.t1.exon6;Parent=MS.gene034251.t1 |
| chr4.1 | CDS | 88674359 | 88674592 | 88674359 | ID=cds.MS.gene034251.t1;Parent=MS.gene034251.t1 |
| Gene Sequence |
| Protein sequence |
