Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035570.t1 | XP_024638822.1 | 96.7 | 629 | 21 | 0 | 1 | 629 | 1 | 629 | 5.2e-310 | 1073.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035570.t1 | Q9S9P3 | 56.0 | 634 | 265 | 7 | 5 | 628 | 4 | 633 | 4.3e-171 | 602.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035570.t1 | A0A396IH54 | 96.7 | 629 | 21 | 0 | 1 | 629 | 1 | 629 | 3.7e-310 | 1073.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035570 | MS.gene042281 | PPI |
| MS.gene053226 | MS.gene035570 | PPI |
| MS.gene035570 | MS.gene035571 | PPI |
| MS.gene035570 | MS.gene91547 | PPI |
| MS.gene035570 | MS.gene044806 | PPI |
| MS.gene035570 | MS.gene73119 | PPI |
| MS.gene035570 | MS.gene62095 | PPI |
| MS.gene035570 | MS.gene012589 | PPI |
| MS.gene035570 | MS.gene012490 | PPI |
| MS.gene034251 | MS.gene035570 | PPI |
| MS.gene035570 | MS.gene88066 | PPI |
| MS.gene035570 | MS.gene86666 | PPI |
| MS.gene035570 | MS.gene012586 | PPI |
| MS.gene44056 | MS.gene035570 | PPI |
| MS.gene40741 | MS.gene035570 | PPI |
| MS.gene035805 | MS.gene035570 | PPI |
| MS.gene035570 | MS.gene001928 | PPI |
| MS.gene035570 | MS.gene000608 | PPI |
| MS.gene035570 | MS.gene042280 | PPI |
| MS.gene035570 | MS.gene52620 | PPI |
| MS.gene035570 | MS.gene053226 | PPI |
| MS.gene035570 | MS.gene035629 | PPI |
| MS.gene035570 | MS.gene064542 | PPI |
| MS.gene005189 | MS.gene035570 | PPI |
| MS.gene012587 | MS.gene035570 | PPI |
| MS.gene035570 | MS.gene042282 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035570.t1 | MTR_4g131350 | 98.410 | 629 | 10 | 0 | 1 | 629 | 54 | 682 | 0.0 | 1272 |
| MS.gene035570.t1 | MTR_4g125920 | 96.979 | 629 | 19 | 0 | 1 | 629 | 1 | 629 | 0.0 | 1250 |
| MS.gene035570.t1 | MTR_4g006760 | 86.020 | 608 | 81 | 4 | 22 | 629 | 22 | 625 | 0.0 | 1029 |
| MS.gene035570.t1 | MTR_4g131310 | 81.416 | 452 | 40 | 4 | 1 | 448 | 1 | 412 | 0.0 | 665 |
| MS.gene035570.t1 | MTR_4g131310 | 98.551 | 69 | 1 | 0 | 553 | 621 | 389 | 457 | 2.24e-36 | 142 |
| MS.gene035570.t1 | MTR_3g067815 | 42.924 | 643 | 344 | 9 | 1 | 626 | 1 | 637 | 7.64e-169 | 496 |
| MS.gene035570.t1 | MTR_5g079940 | 40.701 | 656 | 351 | 13 | 5 | 629 | 472 | 1120 | 1.16e-146 | 453 |
| MS.gene035570.t1 | MTR_5g079940 | 35.616 | 146 | 81 | 5 | 1 | 144 | 1 | 135 | 4.77e-16 | 82.8 |
| MS.gene035570.t1 | MTR_5g079940 | 41.346 | 104 | 51 | 4 | 1 | 103 | 117 | 211 | 4.37e-15 | 79.7 |
| MS.gene035570.t1 | MTR_5g079940 | 39.535 | 86 | 47 | 2 | 19 | 103 | 247 | 328 | 1.65e-13 | 74.7 |
| MS.gene035570.t1 | MTR_5g079940 | 37.255 | 102 | 60 | 3 | 4 | 101 | 352 | 453 | 6.65e-11 | 66.2 |
| MS.gene035570.t1 | MTR_2g097020 | 35.777 | 682 | 348 | 17 | 13 | 629 | 10 | 666 | 2.75e-108 | 341 |
| MS.gene035570.t1 | MTR_2g097010 | 36.527 | 668 | 345 | 16 | 26 | 628 | 23 | 676 | 5.83e-100 | 319 |
| MS.gene035570.t1 | MTR_4g046643 | 36.817 | 641 | 340 | 17 | 26 | 612 | 23 | 652 | 9.07e-100 | 320 |
| MS.gene035570.t1 | MTR_2g095400 | 36.128 | 656 | 349 | 20 | 13 | 628 | 10 | 635 | 6.56e-88 | 286 |
| MS.gene035570.t1 | MTR_4g126200 | 44.361 | 266 | 111 | 6 | 383 | 628 | 3 | 251 | 1.80e-59 | 200 |
| MS.gene035570.t1 | MTR_2g097000 | 38.583 | 381 | 191 | 9 | 268 | 618 | 10 | 377 | 2.04e-56 | 196 |
| MS.gene035570.t1 | MTR_3g067855 | 48.182 | 220 | 110 | 3 | 410 | 629 | 123 | 338 | 1.46e-54 | 190 |
| MS.gene035570.t1 | MTR_3g067845 | 40.711 | 253 | 144 | 4 | 378 | 629 | 4 | 251 | 1.37e-45 | 163 |
| MS.gene035570.t1 | MTR_3g067825 | 46.939 | 98 | 46 | 2 | 537 | 629 | 7 | 103 | 5.50e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035570.t1 | AT1G15910 | 56.361 | 621 | 257 | 7 | 18 | 628 | 17 | 633 | 0.0 | 682 |
| MS.gene035570.t1 | AT4G00380 | 55.323 | 620 | 264 | 6 | 19 | 628 | 18 | 634 | 0.0 | 664 |
| MS.gene035570.t1 | AT4G00380 | 55.323 | 620 | 264 | 6 | 19 | 628 | 18 | 634 | 0.0 | 664 |
| MS.gene035570.t1 | AT4G00380 | 52.181 | 619 | 257 | 6 | 19 | 628 | 18 | 606 | 0.0 | 617 |
| MS.gene035570.t1 | AT1G80790 | 53.140 | 621 | 276 | 7 | 19 | 629 | 19 | 634 | 0.0 | 607 |
| MS.gene035570.t1 | AT1G80790 | 53.140 | 621 | 276 | 7 | 19 | 629 | 19 | 634 | 0.0 | 607 |
| MS.gene035570.t1 | AT3G48670 | 40.630 | 635 | 346 | 10 | 16 | 629 | 21 | 645 | 1.71e-149 | 447 |
| MS.gene035570.t1 | AT3G48670 | 40.630 | 635 | 346 | 10 | 16 | 629 | 21 | 645 | 1.71e-149 | 447 |
| MS.gene035570.t1 | AT3G48670 | 40.630 | 635 | 346 | 10 | 16 | 629 | 21 | 645 | 1.71e-149 | 447 |
| MS.gene035570.t1 | AT1G80790 | 51.876 | 453 | 205 | 6 | 19 | 461 | 19 | 468 | 1.78e-148 | 438 |
| MS.gene035570.t1 | AT3G12550 | 36.364 | 638 | 369 | 12 | 16 | 625 | 5 | 633 | 4.76e-117 | 363 |
| MS.gene035570.t1 | AT3G12550 | 36.207 | 638 | 371 | 11 | 16 | 625 | 5 | 634 | 5.45e-117 | 363 |
| MS.gene035570.t1 | AT3G12550 | 36.207 | 638 | 371 | 11 | 16 | 625 | 5 | 634 | 5.45e-117 | 363 |
| MS.gene035570.t1 | AT3G12550 | 36.207 | 638 | 371 | 11 | 16 | 625 | 5 | 634 | 5.45e-117 | 363 |
| MS.gene035570.t1 | AT1G13790 | 39.768 | 518 | 282 | 8 | 118 | 618 | 219 | 723 | 1.59e-103 | 330 |
| MS.gene035570.t1 | AT1G13790 | 37.662 | 77 | 48 | 0 | 12 | 88 | 3 | 79 | 4.01e-12 | 69.7 |
| MS.gene035570.t1 | AT1G13790 | 39.768 | 518 | 282 | 8 | 118 | 618 | 219 | 723 | 1.59e-103 | 330 |
| MS.gene035570.t1 | AT1G13790 | 37.662 | 77 | 48 | 0 | 12 | 88 | 3 | 79 | 4.01e-12 | 69.7 |
| MS.gene035570.t1 | AT3G12550 | 33.510 | 567 | 342 | 11 | 16 | 556 | 5 | 562 | 1.25e-89 | 290 |
| MS.gene035570.t1 | AT5G59390 | 35.436 | 539 | 307 | 13 | 114 | 628 | 30 | 551 | 3.37e-83 | 272 |
| MS.gene035570.t1 | AT5G59390 | 35.436 | 539 | 307 | 13 | 114 | 628 | 30 | 551 | 3.37e-83 | 272 |
| MS.gene035570.t1 | AT5G59390 | 35.436 | 539 | 307 | 13 | 114 | 628 | 30 | 551 | 3.37e-83 | 272 |
| MS.gene035570.t1 | AT5G59390 | 35.110 | 544 | 307 | 14 | 114 | 628 | 30 | 556 | 5.10e-81 | 266 |
| MS.gene035570.t1 | AT5G59390 | 35.110 | 544 | 307 | 14 | 114 | 628 | 30 | 556 | 5.10e-81 | 266 |
| MS.gene035570.t1 | AT4G01180 | 33.996 | 553 | 300 | 14 | 114 | 628 | 28 | 553 | 2.75e-75 | 251 |
| MS.gene035570.t1 | AT4G01780 | 31.631 | 509 | 229 | 10 | 123 | 629 | 79 | 470 | 4.35e-65 | 221 |
| MS.gene035570.t1 | AT3G29375 | 44.335 | 203 | 105 | 2 | 426 | 628 | 32 | 226 | 2.71e-47 | 166 |
| MS.gene035570.t1 | AT3G29375 | 44.335 | 203 | 105 | 2 | 426 | 628 | 155 | 349 | 5.20e-46 | 167 |
| MS.gene035570.t1 | AT2G16490 | 45.946 | 74 | 40 | 0 | 555 | 628 | 75 | 148 | 8.44e-17 | 79.3 |
| MS.gene035570.t1 | AT3G29375 | 38.843 | 121 | 66 | 2 | 426 | 546 | 32 | 144 | 9.18e-17 | 79.0 |
Find 144 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCTCTGGCAAAGTATT+TGG | 0.140548 | 8.4:+2090722 | MS.gene035570:CDS |
| TTCACTCTGACCACTTTAAA+AGG | 0.163774 | 8.4:-2093335 | None:intergenic |
| CAATTGAAGGATCTTGTTTA+AGG | 0.184121 | 8.4:-2092585 | None:intergenic |
| GGTAATAATAAAACTAATAT+TGG | 0.209949 | 8.4:+2093170 | MS.gene035570:CDS |
| CCATCCTTTAACTCCTTATA+AGG | 0.231876 | 8.4:-2090546 | None:intergenic |
| AAGAGCAACCTTAATGATTC+TGG | 0.249360 | 8.4:+2090867 | MS.gene035570:CDS |
| CAAACCTTATAAGGAGTTAA+AGG | 0.267169 | 8.4:+2090542 | MS.gene035570:CDS |
| GCCAGTATCCAGAATCATTA+AGG | 0.269275 | 8.4:-2090875 | None:intergenic |
| ATGGAGATTGAGGAACTAAA+AGG | 0.270338 | 8.4:+2092641 | MS.gene035570:CDS |
| AATAGAAAGTTTGGAGGATA+TGG | 0.275154 | 8.4:+2092754 | MS.gene035570:CDS |
| CCATGGAGCTTTGCTCTGTT+TGG | 0.285950 | 8.4:+2093282 | MS.gene035570:CDS |
| CAGGCCAGTTCAGACATTTA+TGG | 0.299736 | 8.4:+2091074 | MS.gene035570:CDS |
| GAAGCAAGAGTTCAAATATA+AGG | 0.303067 | 8.4:+2090629 | MS.gene035570:CDS |
| GGCAGACAAAATAGAAAGTT+TGG | 0.306256 | 8.4:+2092745 | MS.gene035570:CDS |
| ATACTCTGACAAACCTTATA+AGG | 0.314776 | 8.4:+2090533 | MS.gene035570:CDS |
| ATTTGTAATGTCAATTTCAT+TGG | 0.353548 | 8.4:-2091234 | None:intergenic |
| AGAAAAGTTGCGTAATGAAT+TGG | 0.355859 | 8.4:+2091608 | MS.gene035570:CDS |
| GTATTCATTTACTTCTTTCA+AGG | 0.362185 | 8.4:-2093553 | None:intergenic |
| TTTGGTCTGCTTCATTTACT+AGG | 0.363332 | 8.4:-2090752 | None:intergenic |
| CTCCTCCAGCATCCTACTTA+AGG | 0.373591 | 8.4:-2091303 | None:intergenic |
| TGCAGGTTGGTTGACAGCTT+CGG | 0.383198 | 8.4:-2090793 | None:intergenic |
| ACTGGAAGAGGACAAGAAAA+AGG | 0.383259 | 8.4:+2091710 | MS.gene035570:CDS |
| TGATCAAGAGAGGCAGAAAC+TGG | 0.385206 | 8.4:+2091692 | MS.gene035570:CDS |
| ACCTTAATGATTCTGGATAC+TGG | 0.387551 | 8.4:+2090874 | MS.gene035570:CDS |
| TTGCAAGTTATGAAACATCT+TGG | 0.395938 | 8.4:+2092668 | MS.gene035570:CDS |
| GAGGAATGAATCACTCTTGT+TGG | 0.397647 | 8.4:+2092355 | MS.gene035570:CDS |
| GGCCAATCGGGGAGTACCTT+CGG | 0.401670 | 8.4:+2091132 | MS.gene035570:CDS |
| CTTAAACAAGATCCTTCAAT+TGG | 0.401905 | 8.4:+2092586 | MS.gene035570:CDS |
| GGAAGAAATGAGCACTGAAT+TGG | 0.405229 | 8.4:+2092724 | MS.gene035570:CDS |
| TTGACAGCTTCGGCCAAAGC+CGG | 0.413440 | 8.4:-2090783 | None:intergenic |
| GGATGTCCATGTATTCTTCA+TGG | 0.417376 | 8.4:+2090926 | MS.gene035570:CDS |
| GGAGCTTTGCTCTGTTTGGC+AGG | 0.418461 | 8.4:+2093286 | MS.gene035570:CDS |
| ATCACTCTTGTTGGCTTCAA+AGG | 0.419125 | 8.4:+2092364 | MS.gene035570:CDS |
| CAGGCTTGTTGAAGAGCAAA+AGG | 0.422308 | 8.4:+2092415 | MS.gene035570:CDS |
| TTTCTTTCTCAAGAAGAAGC+TGG | 0.423912 | 8.4:+2093251 | MS.gene035570:CDS |
| GTAATAATAAAACTAATATT+GGG | 0.428154 | 8.4:+2093171 | MS.gene035570:CDS |
| GTCTGCTTCATTTACTAGGT+CGG | 0.430421 | 8.4:-2090748 | None:intergenic |
| TGACAGCTTCGGCCAAAGCC+GGG | 0.430548 | 8.4:-2090782 | None:intergenic |
| TATAATTGTGGAGGGCCAAT+CGG | 0.436933 | 8.4:+2091119 | MS.gene035570:CDS |
| TACAAAGTGAAGAACTTAAA+CGG | 0.437308 | 8.4:+2090573 | MS.gene035570:CDS |
| CCCATGATGTTTAGTTTCAA+AGG | 0.437487 | 8.4:-2091024 | None:intergenic |
| TGAGGAGGTACGAAGGATCT+TGG | 0.441330 | 8.4:+2091578 | MS.gene035570:CDS |
| AAACAGAAACGCCAAACAAA+AGG | 0.444045 | 8.4:+2090692 | MS.gene035570:CDS |
| TAATTCTCAACCTGCGGTGC+AGG | 0.450934 | 8.4:-2090810 | None:intergenic |
| CCTGTAGTTCATCATTGCTC+TGG | 0.453560 | 8.4:-2092811 | None:intergenic |
| TTCTTTCTCAAGAAGAAGCT+GGG | 0.457631 | 8.4:+2093252 | MS.gene035570:CDS |
| ATAATTGTGGAGGGCCAATC+GGG | 0.458752 | 8.4:+2091120 | MS.gene035570:CDS |
| TGGAGATTGAGGAACTAAAA+GGG | 0.462021 | 8.4:+2092642 | MS.gene035570:CDS |
| GACATCCAATGGTCTGTACT+TGG | 0.464959 | 8.4:-2090910 | None:intergenic |
| TAGCTGATGAGAATGTCTTC+AGG | 0.469727 | 8.4:+2092396 | MS.gene035570:CDS |
| TCCTTTGAAACTAAACATCA+TGG | 0.472800 | 8.4:+2091023 | MS.gene035570:CDS |
| TAATGTCAATTTCATTGGCC+AGG | 0.476378 | 8.4:-2091229 | None:intergenic |
| TTCCGAAGGTACTCCCCGAT+TGG | 0.479350 | 8.4:-2091134 | None:intergenic |
| TGCTGAACCTTTGCTTACTC+CGG | 0.483792 | 8.4:-2090670 | None:intergenic |
| CCATCCATAAATGTCTGAAC+TGG | 0.485326 | 8.4:-2091078 | None:intergenic |
| TAATATTGGGACGAAAAGAA+TGG | 0.490015 | 8.4:+2093184 | MS.gene035570:CDS |
| CACCATCCATGAAGAATACA+TGG | 0.492568 | 8.4:-2090932 | None:intergenic |
| AAAGGCAAACCACCTTGCTC+TGG | 0.493903 | 8.4:+2090710 | MS.gene035570:CDS |
| GATTTGATGCAACATGCAAC+CGG | 0.499938 | 8.4:+2090651 | MS.gene035570:CDS |
| AAAATTAGAAATGGAGATTG+AGG | 0.501255 | 8.4:+2092631 | MS.gene035570:CDS |
| AACATCATGGGAAGAAGGAC+TGG | 0.503730 | 8.4:+2091036 | MS.gene035570:CDS |
| TCAGCCTTCCTTTGTTCCGA+AGG | 0.504609 | 8.4:-2091148 | None:intergenic |
| GGATGCTGGAGGAGAAAGAC+AGG | 0.505595 | 8.4:+2091312 | MS.gene035570:CDS |
| CAGTTCAGACATTTATGGAT+GGG | 0.508021 | 8.4:+2091079 | MS.gene035570:CDS |
| CGCAGGTTGAGAATTATGTC+TGG | 0.508239 | 8.4:+2090817 | MS.gene035570:CDS |
| TGTCAACCAACCTGCACCGC+AGG | 0.510588 | 8.4:+2090800 | MS.gene035570:CDS |
| TAGTAGACTTCAACAATGAC+TGG | 0.511067 | 8.4:+2090967 | MS.gene035570:CDS |
| CATGTCCTTAAGTAGGATGC+TGG | 0.511615 | 8.4:+2091298 | MS.gene035570:CDS |
| TCACTCTGACCACTTTAAAA+GGG | 0.512768 | 8.4:-2093334 | None:intergenic |
| TATCAGTGAGTCTGAGATTG+AGG | 0.513014 | 8.4:+2090509 | MS.gene035570:CDS |
| AATTATGTCTGGCCATGGAC+AGG | 0.519380 | 8.4:+2090828 | MS.gene035570:CDS |
| CTCAGGTGCCCATATTGTGC+TGG | 0.519768 | 8.4:+2090600 | MS.gene035570:CDS |
| AATGGGAGACCTTGATGAGA+AGG | 0.520493 | 8.4:+2093202 | MS.gene035570:CDS |
| TCAAGAAGAAGCTGGGATGA+AGG | 0.521240 | 8.4:+2093259 | MS.gene035570:CDS |
| ACATGAGCTATGGAACTTCA+AGG | 0.521861 | 8.4:+2093599 | MS.gene035570:CDS |
| GACAGCTTCGGCCAAAGCCG+GGG | 0.523172 | 8.4:-2090781 | None:intergenic |
| CCAGTTCAGACATTTATGGA+TGG | 0.523268 | 8.4:+2091078 | MS.gene035570:CDS |
| CTGGCGCTCCTTGACAATGA+GGG | 0.524882 | 8.4:-2092792 | None:intergenic |
| AATATTGGGACGAAAAGAAT+GGG | 0.525422 | 8.4:+2093185 | MS.gene035570:CDS |
| CCAGAGCAATGATGAACTAC+AGG | 0.526461 | 8.4:+2092811 | MS.gene035570:CDS |
| CTTATTTAGATCTCTGCTCC+AGG | 0.528367 | 8.4:-2091655 | None:intergenic |
| AGATCCTTCGTACCTCCTCA+CGG | 0.530263 | 8.4:-2091575 | None:intergenic |
| AACTAAACATCATGGGAAGA+AGG | 0.530602 | 8.4:+2091031 | MS.gene035570:CDS |
| GGGGTTAAATGAAATGCTGA+AGG | 0.533320 | 8.4:+2093148 | MS.gene035570:intron |
| AAATAGCATTGTGGAAAACC+TGG | 0.534545 | 8.4:+2091211 | MS.gene035570:CDS |
| ATTTGCCAAGTACAGACCAT+TGG | 0.540423 | 8.4:+2090905 | MS.gene035570:CDS |
| CGTGAAGATGATTATAATTG+TGG | 0.540581 | 8.4:+2091107 | MS.gene035570:CDS |
| TCTCAACCTGCGGTGCAGGT+TGG | 0.544080 | 8.4:-2090806 | None:intergenic |
| TGATTCTGGATACTGGCTAA+AGG | 0.547223 | 8.4:+2090881 | MS.gene035570:CDS |
| CTTCATGGATGGTGACACTC+AGG | 0.551198 | 8.4:+2090941 | MS.gene035570:CDS |
| AAATGCGGAAGCTTGATACC+TGG | 0.551489 | 8.4:+2091637 | MS.gene035570:CDS |
| AGAAGACCATGTCCTTAAGT+AGG | 0.555180 | 8.4:+2091291 | MS.gene035570:CDS |
| AGAAGCTGGGATGAAGGCCA+TGG | 0.556908 | 8.4:+2093265 | MS.gene035570:CDS |
| TCTGGCGCTCCTTGACAATG+AGG | 0.559354 | 8.4:-2092793 | None:intergenic |
| TTGAGAATTATGTCTGGCCA+TGG | 0.559406 | 8.4:+2090823 | MS.gene035570:CDS |
| TGTACAGCATACCCACCACT+TGG | 0.569747 | 8.4:-2093579 | None:intergenic |
| GATCCTTCGTACCTCCTCAC+GGG | 0.574071 | 8.4:-2091574 | None:intergenic |
| AGCAGACCAAATACCTCCCC+CGG | 0.574685 | 8.4:+2090764 | MS.gene035570:CDS |
| AATGAATACAACCCAAGTGG+TGG | 0.575225 | 8.4:+2093567 | MS.gene035570:CDS |
| GGTATGCTGTACATGAGCTA+TGG | 0.579873 | 8.4:+2093589 | MS.gene035570:CDS |
| CCAAATACTTTGCCAGAGCA+AGG | 0.580035 | 8.4:-2090722 | None:intergenic |
| ACTTAAGCGCAAGAGAGGAT+AGG | 0.584806 | 8.4:+2093680 | MS.gene035570:CDS |
| GAAGATGATTATAATTGTGG+AGG | 0.585641 | 8.4:+2091110 | MS.gene035570:CDS |
| AGAAGTTATTACTTATATCG+TGG | 0.586754 | 8.4:+2093644 | MS.gene035570:CDS |
| AGTACCTTCGGAACAAAGGA+AGG | 0.587192 | 8.4:+2091144 | MS.gene035570:CDS |
| CCAAACAGAGCAAAGCTCCA+TGG | 0.587327 | 8.4:-2093282 | None:intergenic |
| AGAGAGGCAGAAACTGGAAG+AGG | 0.587763 | 8.4:+2091698 | MS.gene035570:CDS |
| CTGGAATTCAAAGGACATGC+AGG | 0.587852 | 8.4:+2091055 | MS.gene035570:CDS |
| GACTTCAACAATGACTGGAA+TGG | 0.589478 | 8.4:+2090972 | MS.gene035570:CDS |
| GAATCAAACCCTCATTGTCA+AGG | 0.592874 | 8.4:+2092784 | MS.gene035570:CDS |
| AAGAATACATGGACATCCAA+TGG | 0.592903 | 8.4:-2090921 | None:intergenic |
| AGACAAAATAGAAAGTTTGG+AGG | 0.593505 | 8.4:+2092748 | MS.gene035570:CDS |
| TTAACGATTATGCCTGTCCA+TGG | 0.594850 | 8.4:-2090840 | None:intergenic |
| CTTTATAGTACATACCTCAT+GGG | 0.595496 | 8.4:-2093363 | None:intergenic |
| GAACTTCAAGGAACAGAGGA+AGG | 0.596171 | 8.4:+2093611 | MS.gene035570:CDS |
| GTCCATGTATTCTTCATGGA+TGG | 0.597803 | 8.4:+2090930 | MS.gene035570:CDS |
| CCTTATAAGGAGTTAAAGGA+TGG | 0.598931 | 8.4:+2090546 | MS.gene035570:CDS |
| CAGCATCCTACTTAAGGACA+TGG | 0.599280 | 8.4:-2091297 | None:intergenic |
| ACAGCTTCGGCCAAAGCCGG+GGG | 0.602001 | 8.4:-2090780 | None:intergenic |
| CCTTTGAAACTAAACATCAT+GGG | 0.603923 | 8.4:+2091024 | MS.gene035570:CDS |
| GGGGAGTACCTTCGGAACAA+AGG | 0.609491 | 8.4:+2091140 | MS.gene035570:CDS |
| AAGCAACTTAAGCGCAAGAG+AGG | 0.619700 | 8.4:+2093675 | MS.gene035570:CDS |
| AAGATGATTATAATTGTGGA+GGG | 0.627167 | 8.4:+2091111 | MS.gene035570:CDS |
| GAAGAAGGACTGGAATTCAA+AGG | 0.628414 | 8.4:+2091046 | MS.gene035570:CDS |
| ATGAATACAACCCAAGTGGT+GGG | 0.633174 | 8.4:+2093568 | MS.gene035570:CDS |
| AGAACTTAAACGGCACACTC+AGG | 0.633398 | 8.4:+2090583 | MS.gene035570:CDS |
| CAGACATAATTCTCAACCTG+CGG | 0.633547 | 8.4:-2090816 | None:intergenic |
| CATGCAACCGGAGTAAGCAA+AGG | 0.637786 | 8.4:+2090663 | MS.gene035570:CDS |
| GGGTTAAATGAAATGCTGAA+GGG | 0.639837 | 8.4:+2093149 | MS.gene035570:CDS |
| AAGCCCGTGAGGAGGTACGA+AGG | 0.640443 | 8.4:+2091571 | MS.gene035570:CDS |
| GACACAGTCAGTTATAGATG+AGG | 0.652703 | 8.4:+2093464 | MS.gene035570:intron |
| GTCCTTAAGTAGGATGCTGG+AGG | 0.661594 | 8.4:+2091301 | MS.gene035570:CDS |
| AGGTACTAACTGATCAAGAG+AGG | 0.662179 | 8.4:+2091682 | MS.gene035570:CDS |
| GTACAGCATACCCACCACTT+GGG | 0.664374 | 8.4:-2093578 | None:intergenic |
| CAGAGATCTAAATAAGCGTG+AGG | 0.673270 | 8.4:+2091662 | MS.gene035570:CDS |
| TGAAAGCAGAAATAGCATTG+TGG | 0.673917 | 8.4:+2091202 | MS.gene035570:CDS |
| GTAAATGAATACAACCCAAG+TGG | 0.677594 | 8.4:+2093564 | MS.gene035570:CDS |
| TAATTGTGGAGGGCCAATCG+GGG | 0.679230 | 8.4:+2091121 | MS.gene035570:CDS |
| GCAGCGTAAAGCCCGTGAGG+AGG | 0.680045 | 8.4:+2091563 | MS.gene035570:CDS |
| TATGGAACTTCAAGGAACAG+AGG | 0.683112 | 8.4:+2093607 | MS.gene035570:CDS |
| TGTCTTTCTAGAAAGACTCG+AGG | 0.689901 | 8.4:+2092336 | MS.gene035570:intron |
| CAGAGTGAATGATACCCATG+AGG | 0.719794 | 8.4:+2093349 | MS.gene035570:CDS |
| TATGCAGCGTAAAGCCCGTG+AGG | 0.720834 | 8.4:+2091560 | MS.gene035570:CDS |
| AATACTTTGCCAGAGCAAGG+TGG | 0.722505 | 8.4:-2090719 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTAAAAAAATAAA+AGG | - | chr8.4:2092170-2092189 | None:intergenic | 0.0% |
| !! | AAATAGTATAATAATTAACA+CGG | + | chr8.4:2093426-2093445 | MS.gene035570:intron | 10.0% |
| !! | GTAATAATAAAACTAATATT+GGG | + | chr8.4:2093171-2093190 | MS.gene035570:CDS | 10.0% |
| !! | ATCAATGTATACTATATATA+TGG | + | chr8.4:2092015-2092034 | MS.gene035570:intron | 15.0% |
| !! | GGTAATAATAAAACTAATAT+TGG | + | chr8.4:2093170-2093189 | MS.gene035570:CDS | 15.0% |
| !!! | ATTATACTATTTCTAAATTG+AGG | - | chr8.4:2093418-2093437 | None:intergenic | 15.0% |
| !!! | TTATTTTATTATTAGAGTCA+AGG | + | chr8.4:2091535-2091554 | MS.gene035570:intron | 15.0% |
| !!! | TTTTAAATATTTTTTGTTGC+TGG | + | chr8.4:2091766-2091785 | MS.gene035570:intron | 15.0% |
| !! | ATTTGTAATGTCAATTTCAT+TGG | - | chr8.4:2091237-2091256 | None:intergenic | 20.0% |
| !! | TATAAACAAGAGTAAATAGA+GGG | - | chr8.4:2092445-2092464 | None:intergenic | 20.0% |
| !! | TTATAAACAAGAGTAAATAG+AGG | - | chr8.4:2092446-2092465 | None:intergenic | 20.0% |
| !!! | AATTCTTATTTCCTAAAGAA+AGG | - | chr8.4:2093040-2093059 | None:intergenic | 20.0% |
| !!! | CTCTAATTTCTATTGTTTTA+GGG | + | chr8.4:2093128-2093147 | MS.gene035570:intron | 20.0% |
| !!! | TCTAATTTCTATTGTTTTAG+GGG | + | chr8.4:2093129-2093148 | MS.gene035570:intron | 20.0% |
| !!! | TCTCTAATTTCTATTGTTTT+AGG | + | chr8.4:2093127-2093146 | MS.gene035570:intron | 20.0% |
| !!! | TTCTTCCATTTTTTTCTTAA+TGG | - | chr8.4:2092711-2092730 | None:intergenic | 20.0% |
| ! | AAAATTAGAAATGGAGATTG+AGG | + | chr8.4:2092631-2092650 | MS.gene035570:CDS | 25.0% |
| ! | AAATTAGAGAGAGAAAAATG+AGG | - | chr8.4:2093117-2093136 | None:intergenic | 25.0% |
| ! | AAGATGATTATAATTGTGGA+GGG | + | chr8.4:2091111-2091130 | MS.gene035570:CDS | 25.0% |
| ! | AATTAGAGAGAGAAAAATGA+GGG | - | chr8.4:2093116-2093135 | None:intergenic | 25.0% |
| ! | ACGAAATTTCAACATAAATG+TGG | - | chr8.4:2092094-2092113 | None:intergenic | 25.0% |
| ! | AGAAGTTATTACTTATATCG+TGG | + | chr8.4:2093644-2093663 | MS.gene035570:CDS | 25.0% |
| ! | ATGAATTGGATGAAAAAATG+CGG | + | chr8.4:2091622-2091641 | MS.gene035570:CDS | 25.0% |
| ! | CAAGAATAGAAAAACATACA+TGG | - | chr8.4:2091429-2091448 | None:intergenic | 25.0% |
| ! | GAAGTAATATTTGAATCTTG+AGG | - | chr8.4:2092316-2092335 | None:intergenic | 25.0% |
| ! | GTATTCATTTACTTCTTTCA+AGG | - | chr8.4:2093556-2093575 | None:intergenic | 25.0% |
| ! | TACAAAGTGAAGAACTTAAA+CGG | + | chr8.4:2090573-2090592 | MS.gene035570:CDS | 25.0% |
| ! | TGAAGCCATTAAGAAAAAAA+TGG | + | chr8.4:2092703-2092722 | MS.gene035570:CDS | 25.0% |
| ! | TGCCAAACAAAAATTAGAAA+TGG | + | chr8.4:2092622-2092641 | MS.gene035570:CDS | 25.0% |
| ! | TTAAGAATACAAGACGATAA+AGG | - | chr8.4:2092944-2092963 | None:intergenic | 25.0% |
| !! | CTCCATTTCTAATTTTTGTT+TGG | - | chr8.4:2092627-2092646 | None:intergenic | 25.0% |
| !! | TCACAATAATCAAAAGCTTT+TGG | - | chr8.4:2091989-2092008 | None:intergenic | 25.0% |
| !!! | AAAAGCTTTTGATTATTGTG+AGG | + | chr8.4:2091988-2092007 | MS.gene035570:intron | 25.0% |
| !!! | ATGATGATTTTAAAGTCTTG+AGG | - | chr8.4:2092278-2092297 | None:intergenic | 25.0% |
| !!! | TTTTGCCTTATTGTATGTAA+AGG | + | chr8.4:2091384-2091403 | MS.gene035570:intron | 25.0% |
| AAAGTTGGGATTCACTTAAA+GGG | - | chr8.4:2091922-2091941 | None:intergenic | 30.0% | |
| AATAGAAAGTTTGGAGGATA+TGG | + | chr8.4:2092754-2092773 | MS.gene035570:CDS | 30.0% | |
| AATATTGGGACGAAAAGAAT+GGG | + | chr8.4:2093185-2093204 | MS.gene035570:CDS | 30.0% | |
| ACAAGACGATAAAGGTTAAA+AGG | - | chr8.4:2092936-2092955 | None:intergenic | 30.0% | |
| AGAAAAGTTGCGTAATGAAT+TGG | + | chr8.4:2091608-2091627 | MS.gene035570:CDS | 30.0% | |
| AGAATGTGAAAAATTCAGCA+TGG | + | chr8.4:2093309-2093328 | MS.gene035570:CDS | 30.0% | |
| AGACAAAATAGAAAGTTTGG+AGG | + | chr8.4:2092748-2092767 | MS.gene035570:CDS | 30.0% | |
| ATACTCTGACAAACCTTATA+AGG | + | chr8.4:2090533-2090552 | MS.gene035570:CDS | 30.0% | |
| ATTAGAGAGAGAAAAATGAG+GGG | - | chr8.4:2093115-2093134 | None:intergenic | 30.0% | |
| CAAACCTTATAAGGAGTTAA+AGG | + | chr8.4:2090542-2090561 | MS.gene035570:CDS | 30.0% | |
| CGTGAAGATGATTATAATTG+TGG | + | chr8.4:2091107-2091126 | MS.gene035570:CDS | 30.0% | |
| CTTAAACAAGATCCTTCAAT+TGG | + | chr8.4:2092586-2092605 | MS.gene035570:CDS | 30.0% | |
| CTTTATAGTACATACCTCAT+GGG | - | chr8.4:2093366-2093385 | None:intergenic | 30.0% | |
| GAAATTAAAAAAGCTCAAGC+AGG | + | chr8.4:2093494-2093513 | MS.gene035570:CDS | 30.0% | |
| GAAGATGATTATAATTGTGG+AGG | + | chr8.4:2091110-2091129 | MS.gene035570:CDS | 30.0% | |
| GAAGCAAGAGTTCAAATATA+AGG | + | chr8.4:2090629-2090648 | MS.gene035570:CDS | 30.0% | |
| GAGTAGAAAAAAACTTGCAT+AGG | + | chr8.4:2091468-2091487 | MS.gene035570:intron | 30.0% | |
| TAATATTGGGACGAAAAGAA+TGG | + | chr8.4:2093184-2093203 | MS.gene035570:CDS | 30.0% | |
| TCTTTATAGTACATACCTCA+TGG | - | chr8.4:2093367-2093386 | None:intergenic | 30.0% | |
| TTCTGCTGTGAATATATTGT+GGG | + | chr8.4:2093074-2093093 | MS.gene035570:intron | 30.0% | |
| TTGCAAGTTATGAAACATCT+TGG | + | chr8.4:2092668-2092687 | MS.gene035570:CDS | 30.0% | |
| ! | ACTTATACTGCATTTTGTTG+AGG | - | chr8.4:2091265-2091284 | None:intergenic | 30.0% |
| ! | CAATTGAAGGATCTTGTTTA+AGG | - | chr8.4:2092588-2092607 | None:intergenic | 30.0% |
| !! | AATCTATGCAACTTGTTAGT+TGG | - | chr8.4:2092973-2092992 | None:intergenic | 30.0% |
| !! | CCTTTGAAACTAAACATCAT+GGG | + | chr8.4:2091024-2091043 | MS.gene035570:CDS | 30.0% |
| !! | TCCTTTGAAACTAAACATCA+TGG | + | chr8.4:2091023-2091042 | MS.gene035570:CDS | 30.0% |
| !!! | CTAATTTTTTGCAAGGACAA+TGG | - | chr8.4:2091813-2091832 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCCAGCACAATAT+GGG | - | chr8.4:2090611-2090630 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTCCAGCACAATA+TGG | - | chr8.4:2090612-2090631 | None:intergenic | 30.0% |
| AAAAAAGCTCAAGCAGGAAT+GGG | + | chr8.4:2093500-2093519 | MS.gene035570:CDS | 35.0% | |
| AAACAGAAACGCCAAACAAA+AGG | + | chr8.4:2090692-2090711 | MS.gene035570:CDS | 35.0% | |
| AAATAGCATTGTGGAAAACC+TGG | + | chr8.4:2091211-2091230 | MS.gene035570:CDS | 35.0% | |
| AACTAAACATCATGGGAAGA+AGG | + | chr8.4:2091031-2091050 | MS.gene035570:CDS | 35.0% | |
| AAGAATACATGGACATCCAA+TGG | - | chr8.4:2090924-2090943 | None:intergenic | 35.0% | |
| AAGAGCAACCTTAATGATTC+TGG | + | chr8.4:2090867-2090886 | MS.gene035570:CDS | 35.0% | |
| ACCTTAATGATTCTGGATAC+TGG | + | chr8.4:2090874-2090893 | MS.gene035570:CDS | 35.0% | |
| AGCAAGTAGAGATTAGAAAG+TGG | - | chr8.4:2092248-2092267 | None:intergenic | 35.0% | |
| ATGGAGATTGAGGAACTAAA+AGG | + | chr8.4:2092641-2092660 | MS.gene035570:CDS | 35.0% | |
| CAAGTTGCATAGATTTCTTC+AGG | + | chr8.4:2092978-2092997 | MS.gene035570:intron | 35.0% | |
| CACAGCCTTTACATACAATA+AGG | - | chr8.4:2091392-2091411 | None:intergenic | 35.0% | |
| CAGTTCAGACATTTATGGAT+GGG | + | chr8.4:2091079-2091098 | MS.gene035570:CDS | 35.0% | |
| CCATCCTTTAACTCCTTATA+AGG | - | chr8.4:2090549-2090568 | None:intergenic | 35.0% | |
| CCTTATAAGGAGTTAAAGGA+TGG | + | chr8.4:2090546-2090565 | MS.gene035570:CDS | 35.0% | |
| GAAAGTTGGGATTCACTTAA+AGG | - | chr8.4:2091923-2091942 | None:intergenic | 35.0% | |
| GATCATCTCTACCTTTCTTT+AGG | + | chr8.4:2093026-2093045 | MS.gene035570:intron | 35.0% | |
| GCAAGTAGAGATTAGAAAGT+GGG | - | chr8.4:2092247-2092266 | None:intergenic | 35.0% | |
| GGCAGACAAAATAGAAAGTT+TGG | + | chr8.4:2092745-2092764 | MS.gene035570:CDS | 35.0% | |
| GGGTTAAATGAAATGCTGAA+GGG | + | chr8.4:2093149-2093168 | MS.gene035570:CDS | 35.0% | |
| GTAAATGAATACAACCCAAG+TGG | + | chr8.4:2093564-2093583 | MS.gene035570:CDS | 35.0% | |
| GTTCTGCTGTGAATATATTG+TGG | + | chr8.4:2093073-2093092 | MS.gene035570:intron | 35.0% | |
| TAAAAAAGCTCAAGCAGGAA+TGG | + | chr8.4:2093499-2093518 | MS.gene035570:CDS | 35.0% | |
| TAATGTCAATTTCATTGGCC+AGG | - | chr8.4:2091232-2091251 | None:intergenic | 35.0% | |
| TAGTAGACTTCAACAATGAC+TGG | + | chr8.4:2090967-2090986 | MS.gene035570:CDS | 35.0% | |
| TCACAAAAACCTTCTCATCA+AGG | - | chr8.4:2093214-2093233 | None:intergenic | 35.0% | |
| TGAAAGCAGAAATAGCATTG+TGG | + | chr8.4:2091202-2091221 | MS.gene035570:CDS | 35.0% | |
| TGGAGATTGAGGAACTAAAA+GGG | + | chr8.4:2092642-2092661 | MS.gene035570:CDS | 35.0% | |
| TGGGATGAAAGAAAACACAT+CGG | - | chr8.4:2092228-2092247 | None:intergenic | 35.0% | |
| TTAGAGAGAGAAAAATGAGG+GGG | - | chr8.4:2093114-2093133 | None:intergenic | 35.0% | |
| TTCACTCTGACCACTTTAAA+AGG | - | chr8.4:2093338-2093357 | None:intergenic | 35.0% | |
| TTCACTTAAAGGGAGTGAAT+AGG | - | chr8.4:2091912-2091931 | None:intergenic | 35.0% | |
| TTCTTTCTCAAGAAGAAGCT+GGG | + | chr8.4:2093252-2093271 | MS.gene035570:CDS | 35.0% | |
| TTTCTTTCTCAAGAAGAAGC+TGG | + | chr8.4:2093251-2093270 | MS.gene035570:CDS | 35.0% | |
| TTTGGTCTGCTTCATTTACT+AGG | - | chr8.4:2090755-2090774 | None:intergenic | 35.0% | |
| ! | CCCATGATGTTTAGTTTCAA+AGG | - | chr8.4:2091027-2091046 | None:intergenic | 35.0% |
| ! | CTTCACAATGCTTTTGTTGA+AGG | + | chr8.4:2091335-2091354 | MS.gene035570:CDS | 35.0% |
| ! | TCACTCTGACCACTTTAAAA+GGG | - | chr8.4:2093337-2093356 | None:intergenic | 35.0% |
| ! | TCTTTTTCTCTCTGGTAGTT+TGG | - | chr8.4:2092560-2092579 | None:intergenic | 35.0% |
| !!! | CTAGTTGCTTTTCCAATTGA+AGG | - | chr8.4:2092601-2092620 | None:intergenic | 35.0% |
| !!! | GACAGGTCTAATTTTTTGCA+AGG | - | chr8.4:2091820-2091839 | None:intergenic | 35.0% |
| AAAAAGCTCAAGCAGGAATG+GGG | + | chr8.4:2093501-2093520 | MS.gene035570:CDS | 40.0% | |
| AAGTGAATCCCAACTTTCGT+TGG | + | chr8.4:2091925-2091944 | MS.gene035570:intron | 40.0% | |
| AATGAATACAACCCAAGTGG+TGG | + | chr8.4:2093567-2093586 | MS.gene035570:CDS | 40.0% | |
| ACATGAGCTATGGAACTTCA+AGG | + | chr8.4:2093599-2093618 | MS.gene035570:CDS | 40.0% | |
| ACTGGAAGAGGACAAGAAAA+AGG | + | chr8.4:2091710-2091729 | MS.gene035570:CDS | 40.0% | |
| AGAAGACCATGTCCTTAAGT+AGG | + | chr8.4:2091291-2091310 | MS.gene035570:CDS | 40.0% | |
| AGGTACTAACTGATCAAGAG+AGG | + | chr8.4:2091682-2091701 | MS.gene035570:CDS | 40.0% | |
| ATGAATACAACCCAAGTGGT+GGG | + | chr8.4:2093568-2093587 | MS.gene035570:CDS | 40.0% | |
| ATGCAAATCAAGAGCAACCA+AGG | - | chr8.4:2091868-2091887 | None:intergenic | 40.0% | |
| ATTAGACCTGTCTTTGTCGA+TGG | + | chr8.4:2091828-2091847 | MS.gene035570:intron | 40.0% | |
| ATTTGCCAAGTACAGACCAT+TGG | + | chr8.4:2090905-2090924 | MS.gene035570:CDS | 40.0% | |
| CACCATCCATGAAGAATACA+TGG | - | chr8.4:2090935-2090954 | None:intergenic | 40.0% | |
| CAGACATAATTCTCAACCTG+CGG | - | chr8.4:2090819-2090838 | None:intergenic | 40.0% | |
| CAGAGATCTAAATAAGCGTG+AGG | + | chr8.4:2091662-2091681 | MS.gene035570:CDS | 40.0% | |
| CCAGTTCAGACATTTATGGA+TGG | + | chr8.4:2091078-2091097 | MS.gene035570:CDS | 40.0% | |
| CCATCCATAAATGTCTGAAC+TGG | - | chr8.4:2091081-2091100 | None:intergenic | 40.0% | |
| CTACCAGAGAGAAAAAGAAG+AGG | + | chr8.4:2092562-2092581 | MS.gene035570:intron | 40.0% | |
| CTCTTAGTCCAATTAGCAGA+TGG | - | chr8.4:2091958-2091977 | None:intergenic | 40.0% | |
| CTTATTTAGATCTCTGCTCC+AGG | - | chr8.4:2091658-2091677 | None:intergenic | 40.0% | |
| GAAGAAGGACTGGAATTCAA+AGG | + | chr8.4:2091046-2091065 | MS.gene035570:CDS | 40.0% | |
| GAATCAAACCCTCATTGTCA+AGG | + | chr8.4:2092784-2092803 | MS.gene035570:CDS | 40.0% | |
| GACACAGTCAGTTATAGATG+AGG | + | chr8.4:2093464-2093483 | MS.gene035570:intron | 40.0% | |
| GACTTCAACAATGACTGGAA+TGG | + | chr8.4:2090972-2090991 | MS.gene035570:CDS | 40.0% | |
| GAGGAATGAATCACTCTTGT+TGG | + | chr8.4:2092355-2092374 | MS.gene035570:CDS | 40.0% | |
| GATTTGATGCAACATGCAAC+CGG | + | chr8.4:2090651-2090670 | MS.gene035570:CDS | 40.0% | |
| GCCAGTATCCAGAATCATTA+AGG | - | chr8.4:2090878-2090897 | None:intergenic | 40.0% | |
| GGATGTCCATGTATTCTTCA+TGG | + | chr8.4:2090926-2090945 | MS.gene035570:CDS | 40.0% | |
| GGGATGAAAGAAAACACATC+GGG | - | chr8.4:2092227-2092246 | None:intergenic | 40.0% | |
| GGGGTTAAATGAAATGCTGA+AGG | + | chr8.4:2093148-2093167 | MS.gene035570:intron | 40.0% | |
| GTCCATGTATTCTTCATGGA+TGG | + | chr8.4:2090930-2090949 | MS.gene035570:CDS | 40.0% | |
| GTCTGCTTCATTTACTAGGT+CGG | - | chr8.4:2090751-2090770 | None:intergenic | 40.0% | |
| TAGCTGATGAGAATGTCTTC+AGG | + | chr8.4:2092396-2092415 | MS.gene035570:CDS | 40.0% | |
| TATAATTGTGGAGGGCCAAT+CGG | + | chr8.4:2091119-2091138 | MS.gene035570:CDS | 40.0% | |
| TATGGAACTTCAAGGAACAG+AGG | + | chr8.4:2093607-2093626 | MS.gene035570:CDS | 40.0% | |
| TCAGCAGAAGACATTCACAA+TGG | - | chr8.4:2092528-2092547 | None:intergenic | 40.0% | |
| TTAACGATTATGCCTGTCCA+TGG | - | chr8.4:2090843-2090862 | None:intergenic | 40.0% | |
| TTAGTCCAATTAGCAGATGG+TGG | - | chr8.4:2091955-2091974 | None:intergenic | 40.0% | |
| TTGAGAATTATGTCTGGCCA+TGG | + | chr8.4:2090823-2090842 | MS.gene035570:CDS | 40.0% | |
| ! | GTGAATGTCTTCTGCTGATT+TGG | + | chr8.4:2092530-2092549 | MS.gene035570:intron | 40.0% |
| ! | TATCAGTGAGTCTGAGATTG+AGG | + | chr8.4:2090509-2090528 | MS.gene035570:CDS | 40.0% |
| ! | TGATTCTGGATACTGGCTAA+AGG | + | chr8.4:2090881-2090900 | MS.gene035570:CDS | 40.0% |
| ! | TGTCTTTCTAGAAAGACTCG+AGG | + | chr8.4:2092336-2092355 | MS.gene035570:intron | 40.0% |
| !! | AAGGTGGTTTGCCTTTTGTT+TGG | - | chr8.4:2090706-2090725 | None:intergenic | 40.0% |
| !! | ATCACTCTTGTTGGCTTCAA+AGG | + | chr8.4:2092364-2092383 | MS.gene035570:CDS | 40.0% |
| !! | GGAAGAAATGAGCACTGAAT+TGG | + | chr8.4:2092724-2092743 | MS.gene035570:CDS | 40.0% |
| AAATGCGGAAGCTTGATACC+TGG | + | chr8.4:2091637-2091656 | MS.gene035570:CDS | 45.0% | |
| AACATCATGGGAAGAAGGAC+TGG | + | chr8.4:2091036-2091055 | MS.gene035570:CDS | 45.0% | |
| AAGCAACTTAAGCGCAAGAG+AGG | + | chr8.4:2093675-2093694 | MS.gene035570:CDS | 45.0% | |
| AAGGCTGTGTGCTTCATGTT+TGG | + | chr8.4:2091403-2091422 | MS.gene035570:intron | 45.0% | |
| AATACTTTGCCAGAGCAAGG+TGG | - | chr8.4:2090722-2090741 | None:intergenic | 45.0% | |
| AATGGGAGACCTTGATGAGA+AGG | + | chr8.4:2093202-2093221 | MS.gene035570:CDS | 45.0% | |
| AATTATGTCTGGCCATGGAC+AGG | + | chr8.4:2090828-2090847 | MS.gene035570:CDS | 45.0% | |
| AGAACTTAAACGGCACACTC+AGG | + | chr8.4:2090583-2090602 | MS.gene035570:CDS | 45.0% | |
| AGGATACCATCGACAAAGAC+AGG | - | chr8.4:2091837-2091856 | None:intergenic | 45.0% | |
| AGTACCTTCGGAACAAAGGA+AGG | + | chr8.4:2091144-2091163 | MS.gene035570:CDS | 45.0% | |
| ATAATTGTGGAGGGCCAATC+GGG | + | chr8.4:2091120-2091139 | MS.gene035570:CDS | 45.0% | |
| CAGAGTGAATGATACCCATG+AGG | + | chr8.4:2093349-2093368 | MS.gene035570:CDS | 45.0% | |
| CAGCATCCTACTTAAGGACA+TGG | - | chr8.4:2091300-2091319 | None:intergenic | 45.0% | |
| CAGGCCAGTTCAGACATTTA+TGG | + | chr8.4:2091074-2091093 | MS.gene035570:CDS | 45.0% | |
| CATGTCCTTAAGTAGGATGC+TGG | + | chr8.4:2091298-2091317 | MS.gene035570:CDS | 45.0% | |
| CCAAATACTTTGCCAGAGCA+AGG | - | chr8.4:2090725-2090744 | None:intergenic | 45.0% | |
| CCAGAGCAATGATGAACTAC+AGG | + | chr8.4:2092811-2092830 | MS.gene035570:CDS | 45.0% | |
| CCTGTAGTTCATCATTGCTC+TGG | - | chr8.4:2092814-2092833 | None:intergenic | 45.0% | |
| CTGGAATTCAAAGGACATGC+AGG | + | chr8.4:2091055-2091074 | MS.gene035570:CDS | 45.0% | |
| GAACTTCAAGGAACAGAGGA+AGG | + | chr8.4:2093611-2093630 | MS.gene035570:CDS | 45.0% | |
| GACATCCAATGGTCTGTACT+TGG | - | chr8.4:2090913-2090932 | None:intergenic | 45.0% | |
| GGTAGAGATGATCTTCACAC+AGG | - | chr8.4:2093019-2093038 | None:intergenic | 45.0% | |
| GGTATGCTGTACATGAGCTA+TGG | + | chr8.4:2093589-2093608 | MS.gene035570:CDS | 45.0% | |
| TCAAGAAGAAGCTGGGATGA+AGG | + | chr8.4:2093259-2093278 | MS.gene035570:CDS | 45.0% | |
| TCAAGAGCAACCAAGGACAT+TGG | - | chr8.4:2091861-2091880 | None:intergenic | 45.0% | |
| TGATCAAGAGAGGCAGAAAC+TGG | + | chr8.4:2091692-2091711 | MS.gene035570:CDS | 45.0% | |
| TGCTGAACCTTTGCTTACTC+CGG | - | chr8.4:2090673-2090692 | None:intergenic | 45.0% | |
| TGGTATCCTACCAATGTCCT+TGG | + | chr8.4:2091848-2091867 | MS.gene035570:intron | 45.0% | |
| ! | AGGCCTCTTCTTTTTCTCTC+TGG | - | chr8.4:2092568-2092587 | None:intergenic | 45.0% |
| ! | CCTTGCTCTGGCAAAGTATT+TGG | + | chr8.4:2090722-2090741 | MS.gene035570:CDS | 45.0% |
| ! | CGCAGGTTGAGAATTATGTC+TGG | + | chr8.4:2090817-2090836 | MS.gene035570:CDS | 45.0% |
| !! | AGCATGGCACCCTTTTAAAG+TGG | + | chr8.4:2093325-2093344 | MS.gene035570:CDS | 45.0% |
| !! | CAGGCTTGTTGAAGAGCAAA+AGG | + | chr8.4:2092415-2092434 | MS.gene035570:CDS | 45.0% |
| !! | TCCAATTAGCAGATGGTGGA+AGG | - | chr8.4:2091951-2091970 | None:intergenic | 45.0% |
| !!! | CGGGCAGATGTGGTTTTTTA+TGG | - | chr8.4:2092208-2092227 | None:intergenic | 45.0% |
| !!! | TTTTTTTAATTCTATATAAA+AGG | + | chr8.4:2092886-2092905 | MS.gene035570:intron | 5.0% |
| !!! | TTTTTTTTTTAACAAATATA+TGG | + | chr8.4:2092053-2092072 | MS.gene035570:intron | 5.0% |
| AAAGGCAAACCACCTTGCTC+TGG | + | chr8.4:2090710-2090729 | MS.gene035570:CDS | 50.0% | |
| AGAGAGGCAGAAACTGGAAG+AGG | + | chr8.4:2091698-2091717 | MS.gene035570:CDS | 50.0% | |
| AGATCCTTCGTACCTCCTCA+CGG | - | chr8.4:2091578-2091597 | None:intergenic | 50.0% | |
| CATGCAACCGGAGTAAGCAA+AGG | + | chr8.4:2090663-2090682 | MS.gene035570:CDS | 50.0% | |
| CCAAACAGAGCAAAGCTCCA+TGG | - | chr8.4:2093285-2093304 | None:intergenic | 50.0% | |
| CCATGGAGCTTTGCTCTGTT+TGG | + | chr8.4:2093282-2093301 | MS.gene035570:CDS | 50.0% | |
| CTCCTCCAGCATCCTACTTA+AGG | - | chr8.4:2091306-2091325 | None:intergenic | 50.0% | |
| CTTCATGGATGGTGACACTC+AGG | + | chr8.4:2090941-2090960 | MS.gene035570:CDS | 50.0% | |
| GAAAACACATCGGGCAGATG+TGG | - | chr8.4:2092218-2092237 | None:intergenic | 50.0% | |
| GAGCAACCAAGGACATTGGT+AGG | - | chr8.4:2091857-2091876 | None:intergenic | 50.0% | |
| GCCTTCCACCATCTGCTAAT+TGG | + | chr8.4:2091947-2091966 | MS.gene035570:intron | 50.0% | |
| GTACAGCATACCCACCACTT+GGG | - | chr8.4:2093581-2093600 | None:intergenic | 50.0% | |
| GTCCTTAAGTAGGATGCTGG+AGG | + | chr8.4:2091301-2091320 | MS.gene035570:CDS | 50.0% | |
| GTGGAAGGCCAACGAAAGTT+GGG | - | chr8.4:2091936-2091955 | None:intergenic | 50.0% | |
| TAATTCTCAACCTGCGGTGC+AGG | - | chr8.4:2090813-2090832 | None:intergenic | 50.0% | |
| TAATTGTGGAGGGCCAATCG+GGG | + | chr8.4:2091121-2091140 | MS.gene035570:CDS | 50.0% | |
| TCAGCCTTCCTTTGTTCCGA+AGG | - | chr8.4:2091151-2091170 | None:intergenic | 50.0% | |
| TGTACAGCATACCCACCACT+TGG | - | chr8.4:2093582-2093601 | None:intergenic | 50.0% | |
| ! | TGAGGAGGTACGAAGGATCT+TGG | + | chr8.4:2091578-2091597 | MS.gene035570:CDS | 50.0% |
| !! | TGCAGGTTGGTTGACAGCTT+CGG | - | chr8.4:2090796-2090815 | None:intergenic | 50.0% |
| AGAAGCTGGGATGAAGGCCA+TGG | + | chr8.4:2093265-2093284 | MS.gene035570:CDS | 55.0% | |
| AGCAGACCAAATACCTCCCC+CGG | + | chr8.4:2090764-2090783 | MS.gene035570:CDS | 55.0% | |
| CTCAGGTGCCCATATTGTGC+TGG | + | chr8.4:2090600-2090619 | MS.gene035570:CDS | 55.0% | |
| CTGGCGCTCCTTGACAATGA+GGG | - | chr8.4:2092795-2092814 | None:intergenic | 55.0% | |
| GATCCTTCGTACCTCCTCAC+GGG | - | chr8.4:2091577-2091596 | None:intergenic | 55.0% | |
| GGAGCTTTGCTCTGTTTGGC+AGG | + | chr8.4:2093286-2093305 | MS.gene035570:CDS | 55.0% | |
| GGATGCTGGAGGAGAAAGAC+AGG | + | chr8.4:2091312-2091331 | MS.gene035570:CDS | 55.0% | |
| GGTGGAAGGCCAACGAAAGT+TGG | - | chr8.4:2091937-2091956 | None:intergenic | 55.0% | |
| TATGCAGCGTAAAGCCCGTG+AGG | + | chr8.4:2091560-2091579 | MS.gene035570:CDS | 55.0% | |
| TCTGGCGCTCCTTGACAATG+AGG | - | chr8.4:2092796-2092815 | None:intergenic | 55.0% | |
| TTGACAGCTTCGGCCAAAGC+CGG | - | chr8.4:2090786-2090805 | None:intergenic | 55.0% | |
| !! | GGGGAGTACCTTCGGAACAA+AGG | + | chr8.4:2091140-2091159 | MS.gene035570:CDS | 55.0% |
| !! | TTCCGAAGGTACTCCCCGAT+TGG | - | chr8.4:2091137-2091156 | None:intergenic | 55.0% |
| CCAAATACCTCCCCCGGCTT+TGG | + | chr8.4:2090770-2090789 | MS.gene035570:CDS | 60.0% | |
| TCTCAACCTGCGGTGCAGGT+TGG | - | chr8.4:2090809-2090828 | None:intergenic | 60.0% | |
| TGACAGCTTCGGCCAAAGCC+GGG | - | chr8.4:2090785-2090804 | None:intergenic | 60.0% | |
| TGTCAACCAACCTGCACCGC+AGG | + | chr8.4:2090800-2090819 | MS.gene035570:CDS | 60.0% | |
| ! | AAGCCCGTGAGGAGGTACGA+AGG | + | chr8.4:2091571-2091590 | MS.gene035570:CDS | 60.0% |
| !! | CCAAAGCCGGGGGAGGTATT+TGG | - | chr8.4:2090773-2090792 | None:intergenic | 60.0% |
| !! | GGCCAATCGGGGAGTACCTT+CGG | + | chr8.4:2091132-2091151 | MS.gene035570:CDS | 60.0% |
| ACAGCTTCGGCCAAAGCCGG+GGG | - | chr8.4:2090783-2090802 | None:intergenic | 65.0% | |
| GACAGCTTCGGCCAAAGCCG+GGG | - | chr8.4:2090784-2090803 | None:intergenic | 65.0% | |
| GCAGCGTAAAGCCCGTGAGG+AGG | + | chr8.4:2091563-2091582 | MS.gene035570:CDS | 65.0% | |
| GCTTCGGCCAAAGCCGGGGG+AGG | - | chr8.4:2090780-2090799 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 2090480 | 2093701 | 2090480 | ID=MS.gene035570 |
| chr8.4 | mRNA | 2090480 | 2093701 | 2090480 | ID=MS.gene035570.t1;Parent=MS.gene035570 |
| chr8.4 | exon | 2090480 | 2091356 | 2090480 | ID=MS.gene035570.t1.exon1;Parent=MS.gene035570.t1 |
| chr8.4 | CDS | 2090480 | 2091356 | 2090480 | ID=cds.MS.gene035570.t1;Parent=MS.gene035570.t1 |
| chr8.4 | exon | 2091550 | 2091731 | 2091550 | ID=MS.gene035570.t1.exon2;Parent=MS.gene035570.t1 |
| chr8.4 | CDS | 2091550 | 2091731 | 2091550 | ID=cds.MS.gene035570.t1;Parent=MS.gene035570.t1 |
| chr8.4 | exon | 2092347 | 2092436 | 2092347 | ID=MS.gene035570.t1.exon3;Parent=MS.gene035570.t1 |
| chr8.4 | CDS | 2092347 | 2092436 | 2092347 | ID=cds.MS.gene035570.t1;Parent=MS.gene035570.t1 |
| chr8.4 | exon | 2092569 | 2092856 | 2092569 | ID=MS.gene035570.t1.exon4;Parent=MS.gene035570.t1 |
| chr8.4 | CDS | 2092569 | 2092856 | 2092569 | ID=cds.MS.gene035570.t1;Parent=MS.gene035570.t1 |
| chr8.4 | exon | 2093149 | 2093370 | 2093149 | ID=MS.gene035570.t1.exon5;Parent=MS.gene035570.t1 |
| chr8.4 | CDS | 2093149 | 2093370 | 2093149 | ID=cds.MS.gene035570.t1;Parent=MS.gene035570.t1 |
| chr8.4 | exon | 2093471 | 2093701 | 2093471 | ID=MS.gene035570.t1.exon6;Parent=MS.gene035570.t1 |
| chr8.4 | CDS | 2093471 | 2093701 | 2093471 | ID=cds.MS.gene035570.t1;Parent=MS.gene035570.t1 |
| Gene Sequence |
| Protein sequence |
