Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012586.t1 | RHN64611.1 | 67.4 | 629 | 106 | 3 | 1 | 530 | 1 | 629 | 2.70E-194 | 688.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012586.t1 | Q9S9P3 | 40.7 | 631 | 267 | 10 | 5 | 529 | 4 | 633 | 4.5e-97 | 356.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012586.t1 | A0A396IIA7 | 67.4 | 629 | 106 | 3 | 1 | 530 | 1 | 629 | 2.0e-194 | 688.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044806 | MS.gene012586 | PPI |
| MS.gene035571 | MS.gene012586 | PPI |
| MS.gene44056 | MS.gene012586 | PPI |
| MS.gene035629 | MS.gene012586 | PPI |
| MS.gene73119 | MS.gene012586 | PPI |
| MS.gene40741 | MS.gene012586 | PPI |
| MS.gene035805 | MS.gene012586 | PPI |
| MS.gene012586 | MS.gene000608 | PPI |
| MS.gene012586 | MS.gene042280 | PPI |
| MS.gene042281 | MS.gene012586 | PPI |
| MS.gene91547 | MS.gene012586 | PPI |
| MS.gene005189 | MS.gene012586 | PPI |
| MS.gene012587 | MS.gene012586 | PPI |
| MS.gene012589 | MS.gene012586 | PPI |
| MS.gene053226 | MS.gene012586 | PPI |
| MS.gene042282 | MS.gene012586 | PPI |
| MS.gene52620 | MS.gene012586 | PPI |
| MS.gene035570 | MS.gene012586 | PPI |
| MS.gene042280 | MS.gene012586 | PPI |
| MS.gene000608 | MS.gene012586 | PPI |
| MS.gene064542 | MS.gene012586 | PPI |
| MS.gene62095 | MS.gene012586 | PPI |
| MS.gene88066 | MS.gene012586 | PPI |
| MS.gene034251 | MS.gene012586 | PPI |
| MS.gene012490 | MS.gene012586 | PPI |
| MS.gene86666 | MS.gene012586 | PPI |
| MS.gene001928 | MS.gene012586 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012586.t1 | MTR_4g131350 | 87.572 | 523 | 54 | 2 | 1 | 512 | 54 | 576 | 0.0 | 867 |
| MS.gene012586.t1 | MTR_4g125920 | 85.821 | 536 | 63 | 3 | 1 | 523 | 1 | 536 | 0.0 | 865 |
| MS.gene012586.t1 | MTR_4g125920 | 94.595 | 37 | 2 | 0 | 494 | 530 | 593 | 629 | 1.37e-14 | 77.0 |
| MS.gene012586.t1 | MTR_4g006760 | 78.807 | 486 | 89 | 5 | 22 | 496 | 22 | 504 | 0.0 | 733 |
| MS.gene012586.t1 | MTR_4g131310 | 71.698 | 530 | 69 | 7 | 1 | 522 | 1 | 457 | 0.0 | 661 |
| MS.gene012586.t1 | MTR_3g067815 | 40.000 | 525 | 282 | 10 | 1 | 497 | 1 | 520 | 1.01e-115 | 356 |
| MS.gene012586.t1 | MTR_5g079940 | 38.246 | 536 | 283 | 14 | 4 | 497 | 471 | 1000 | 6.56e-94 | 310 |
| MS.gene012586.t1 | MTR_5g079940 | 33.562 | 146 | 84 | 5 | 1 | 144 | 1 | 135 | 1.66e-15 | 80.5 |
| MS.gene012586.t1 | MTR_5g079940 | 39.423 | 104 | 53 | 4 | 1 | 103 | 117 | 211 | 1.97e-14 | 77.0 |
| MS.gene012586.t1 | MTR_5g079940 | 38.372 | 86 | 48 | 2 | 19 | 103 | 247 | 328 | 2.95e-13 | 73.2 |
| MS.gene012586.t1 | MTR_5g079940 | 36.634 | 101 | 60 | 3 | 5 | 101 | 353 | 453 | 5.78e-11 | 65.9 |
| MS.gene012586.t1 | MTR_2g097020 | 31.444 | 547 | 289 | 16 | 13 | 497 | 10 | 532 | 8.27e-57 | 201 |
| MS.gene012586.t1 | MTR_4g046643 | 31.395 | 516 | 294 | 16 | 33 | 497 | 32 | 538 | 3.81e-54 | 194 |
| MS.gene012586.t1 | MTR_2g095400 | 33.652 | 523 | 294 | 18 | 13 | 497 | 10 | 517 | 2.50e-53 | 191 |
| MS.gene012586.t1 | MTR_2g097010 | 32.270 | 533 | 288 | 15 | 26 | 497 | 23 | 543 | 1.54e-50 | 184 |
| MS.gene012586.t1 | MTR_4g126200 | 41.463 | 123 | 61 | 3 | 375 | 497 | 3 | 114 | 2.42e-15 | 76.6 |
| MS.gene012586.t1 | MTR_2g097000 | 43.836 | 146 | 75 | 4 | 355 | 497 | 113 | 254 | 1.13e-13 | 73.2 |
| MS.gene012586.t1 | MTR_3g067845 | 39.370 | 127 | 71 | 2 | 372 | 495 | 6 | 129 | 7.48e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012586.t1 | AT1G15910 | 51.703 | 499 | 217 | 8 | 18 | 495 | 17 | 512 | 5.30e-164 | 480 |
| MS.gene012586.t1 | AT4G00380 | 51.102 | 499 | 219 | 7 | 19 | 495 | 18 | 513 | 1.63e-160 | 471 |
| MS.gene012586.t1 | AT4G00380 | 51.102 | 499 | 219 | 7 | 19 | 495 | 18 | 513 | 1.63e-160 | 471 |
| MS.gene012586.t1 | AT4G00380 | 47.379 | 496 | 214 | 8 | 19 | 495 | 18 | 485 | 2.99e-142 | 423 |
| MS.gene012586.t1 | AT1G80790 | 48.682 | 493 | 227 | 9 | 19 | 490 | 19 | 506 | 7.13e-140 | 418 |
| MS.gene012586.t1 | AT1G80790 | 48.682 | 493 | 227 | 9 | 19 | 490 | 19 | 506 | 7.13e-140 | 418 |
| MS.gene012586.t1 | AT1G80790 | 48.463 | 423 | 197 | 7 | 19 | 423 | 19 | 438 | 2.11e-130 | 388 |
| MS.gene012586.t1 | AT3G48670 | 37.109 | 512 | 283 | 10 | 16 | 497 | 21 | 523 | 8.43e-95 | 302 |
| MS.gene012586.t1 | AT3G48670 | 37.109 | 512 | 283 | 10 | 16 | 497 | 21 | 523 | 8.43e-95 | 302 |
| MS.gene012586.t1 | AT3G48670 | 37.109 | 512 | 283 | 10 | 16 | 497 | 21 | 523 | 8.43e-95 | 302 |
| MS.gene012586.t1 | AT3G12550 | 32.630 | 521 | 299 | 13 | 16 | 495 | 5 | 514 | 1.51e-70 | 236 |
| MS.gene012586.t1 | AT3G12550 | 33.138 | 513 | 291 | 13 | 24 | 495 | 13 | 514 | 6.00e-70 | 236 |
| MS.gene012586.t1 | AT3G12550 | 33.138 | 513 | 291 | 13 | 24 | 495 | 13 | 514 | 6.00e-70 | 236 |
| MS.gene012586.t1 | AT3G12550 | 33.138 | 513 | 291 | 13 | 24 | 495 | 13 | 514 | 6.00e-70 | 236 |
| MS.gene012586.t1 | AT3G12550 | 33.138 | 513 | 291 | 13 | 24 | 495 | 13 | 514 | 6.19e-70 | 236 |
| MS.gene012586.t1 | AT1G13790 | 33.167 | 401 | 230 | 8 | 118 | 491 | 219 | 608 | 1.63e-48 | 179 |
| MS.gene012586.t1 | AT1G13790 | 36.364 | 77 | 49 | 0 | 12 | 88 | 3 | 79 | 3.30e-12 | 69.7 |
| MS.gene012586.t1 | AT1G13790 | 33.167 | 401 | 230 | 8 | 118 | 491 | 219 | 608 | 1.63e-48 | 179 |
| MS.gene012586.t1 | AT1G13790 | 36.364 | 77 | 49 | 0 | 12 | 88 | 3 | 79 | 3.30e-12 | 69.7 |
| MS.gene012586.t1 | AT5G59390 | 31.325 | 415 | 237 | 11 | 112 | 495 | 28 | 425 | 1.64e-44 | 165 |
| MS.gene012586.t1 | AT5G59390 | 31.325 | 415 | 237 | 11 | 112 | 495 | 28 | 425 | 1.64e-44 | 165 |
| MS.gene012586.t1 | AT5G59390 | 31.325 | 415 | 237 | 11 | 112 | 495 | 28 | 425 | 1.64e-44 | 165 |
| MS.gene012586.t1 | AT4G01180 | 31.785 | 409 | 236 | 11 | 114 | 495 | 28 | 420 | 4.64e-43 | 161 |
| MS.gene012586.t1 | AT5G59390 | 30.952 | 420 | 237 | 12 | 112 | 495 | 28 | 430 | 1.71e-42 | 160 |
| MS.gene012586.t1 | AT5G59390 | 30.952 | 420 | 237 | 12 | 112 | 495 | 28 | 430 | 1.71e-42 | 160 |
| MS.gene012586.t1 | AT4G01780 | 28.371 | 356 | 161 | 9 | 123 | 475 | 79 | 343 | 1.53e-27 | 115 |
| MS.gene012586.t1 | AT2G16490 | 34.416 | 154 | 71 | 5 | 400 | 529 | 1 | 148 | 1.91e-14 | 72.0 |
Find 124 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGAAGGATCTTGTTTA+AGG | 0.184121 | 8.1:-2382518 | None:intergenic |
| GGTAATAATAAAACTAATAT+TGG | 0.209949 | 8.1:+2383055 | MS.gene012586:CDS |
| CCATCCTTTAACTCCTTATA+AGG | 0.231876 | 8.1:-2380204 | None:intergenic |
| AAGAGCAACCTTAATGATTC+TGG | 0.249360 | 8.1:+2380525 | MS.gene012586:CDS |
| GAAGAAAGAGTTCAAATATA+AGG | 0.256178 | 8.1:+2380287 | MS.gene012586:CDS |
| CAAACCTTATAAGGAGTTAA+AGG | 0.267169 | 8.1:+2380200 | MS.gene012586:CDS |
| GCCAGTATCCAGAATCATTA+AGG | 0.269275 | 8.1:-2380533 | None:intergenic |
| ATGGAGATTGAGGAACTAAA+AGG | 0.270338 | 8.1:+2382574 | MS.gene012586:CDS |
| CTCCTCCAGCATCCTACTTA+TGG | 0.276527 | 8.1:-2380961 | None:intergenic |
| TACTGAATTGGAAGAAAGTT+TGG | 0.280963 | 8.1:+2382669 | MS.gene012586:CDS |
| CAGGCCAGTTCAGACATTTA+TGG | 0.299736 | 8.1:+2380732 | MS.gene012586:CDS |
| ATACTCTGACAAACCTTATA+AGG | 0.314776 | 8.1:+2380191 | MS.gene012586:CDS |
| CAGCATACCCTTCAGCATTA+AGG | 0.320481 | 8.1:-2383096 | None:intergenic |
| GGAAGAAATGAGTACTGAAT+TGG | 0.340118 | 8.1:+2382657 | MS.gene012586:CDS |
| ATTTGTAATGTCAATTTCAT+TGG | 0.353548 | 8.1:-2380892 | None:intergenic |
| GGAAAAGTTGCGTAATGAAT+TGG | 0.355859 | 8.1:+2381267 | MS.gene012586:CDS |
| TTTGGTCTGCTTCATTTACT+AGG | 0.363332 | 8.1:-2380410 | None:intergenic |
| AGGAAGGCTGAGAACAATTT+CGG | 0.365624 | 8.1:+2380818 | MS.gene012586:CDS |
| CGATCAAGAGAGGCAGAAAC+TGG | 0.373050 | 8.1:+2381351 | MS.gene012586:CDS |
| TGAGGAGGTGCGAAGGATCT+TGG | 0.385235 | 8.1:+2381237 | MS.gene012586:CDS |
| ACCTTAATGATTCTGGATAC+TGG | 0.387551 | 8.1:+2380532 | MS.gene012586:CDS |
| TTGCAAGTTATGAAACATCT+TGG | 0.395938 | 8.1:+2382601 | MS.gene012586:CDS |
| GGCCAATCGGGGAGTACCTT+CGG | 0.401670 | 8.1:+2380790 | MS.gene012586:CDS |
| CTTAAACAAGATCCTTCAAT+TGG | 0.401905 | 8.1:+2382519 | MS.gene012586:CDS |
| CTTGTAGTTCATCATTGCTC+TGG | 0.417100 | 8.1:-2382735 | None:intergenic |
| GGATGTCCATGTATTCTTCA+TGG | 0.417376 | 8.1:+2380584 | MS.gene012586:CDS |
| GAGGAATGAGTTACTCTTGT+TGG | 0.420705 | 8.1:+2382284 | MS.gene012586:CDS |
| CAGGCTTATTGAAGAGCAAA+AGG | 0.427969 | 8.1:+2382344 | MS.gene012586:CDS |
| GTAATAATAAAACTAATATT+GGG | 0.428154 | 8.1:+2383056 | MS.gene012586:CDS |
| GTCTGCTTCATTTACTAGGT+CGG | 0.430421 | 8.1:-2380406 | None:intergenic |
| CACAAAGTGAAGAATTTAAA+CGG | 0.430749 | 8.1:+2380231 | MS.gene012586:CDS |
| TGAAAGAGAAAATAGAAAAT+CGG | 0.433278 | 8.1:+2380860 | MS.gene012586:CDS |
| TTGACAGCTTCGACCAAAGC+CGG | 0.434672 | 8.1:-2380441 | None:intergenic |
| TATAATTGTGGAGGGCCAAT+CGG | 0.436933 | 8.1:+2380777 | MS.gene012586:CDS |
| CCCATGATGTTTAGTTTCAA+AGG | 0.437487 | 8.1:-2380682 | None:intergenic |
| AAACAGAAACGCCAAACAAA+AGG | 0.444045 | 8.1:+2380350 | MS.gene012586:CDS |
| AGATCCTTCGCACCTCCTCA+TGG | 0.450183 | 8.1:-2381234 | None:intergenic |
| TAATTCTCAACCTGCGGTAC+AGG | 0.455932 | 8.1:-2380468 | None:intergenic |
| GCGAAGGATCTTGGAAGAAC+AGG | 0.456862 | 8.1:+2381246 | MS.gene012586:CDS |
| CAGTTTCTGCCTCTCTTGAT+CGG | 0.457451 | 8.1:-2381350 | None:intergenic |
| GTTACTCTTGTTGGCTTCAA+AGG | 0.458746 | 8.1:+2382293 | MS.gene012586:CDS |
| ATAATTGTGGAGGGCCAATC+GGG | 0.458752 | 8.1:+2380778 | MS.gene012586:CDS |
| TGGAGATTGAGGAACTAAAA+GGG | 0.462021 | 8.1:+2382575 | MS.gene012586:CDS |
| TAGCTGATGAGAATGTCTTC+AGG | 0.469727 | 8.1:+2382325 | MS.gene012586:CDS |
| TCCTTTGAAACTAAACATCA+TGG | 0.472800 | 8.1:+2380681 | MS.gene012586:CDS |
| ATTTGAGCTATGGAACTTCA+AGG | 0.478463 | 8.1:+2383120 | MS.gene012586:CDS |
| TTCCGAAGGTACTCCCCGAT+TGG | 0.479350 | 8.1:-2380792 | None:intergenic |
| TGCTGAACCTTTGCTTACTC+CGG | 0.483792 | 8.1:-2380328 | None:intergenic |
| CCATCCATAAATGTCTGAAC+TGG | 0.485326 | 8.1:-2380736 | None:intergenic |
| TGACAGCTTCGACCAAAGCC+GGG | 0.488259 | 8.1:-2380440 | None:intergenic |
| TAATATTGGGACGAAAAGAA+TGG | 0.490015 | 8.1:+2383069 | MS.gene012586:CDS |
| CACCATCCATGAAGAATACA+TGG | 0.492568 | 8.1:-2380590 | None:intergenic |
| AAAGGCAAACCACCTCGCTC+TGG | 0.499352 | 8.1:+2380368 | MS.gene012586:CDS |
| GATTTGATGCAACATGCAAC+CGG | 0.499938 | 8.1:+2380309 | MS.gene012586:CDS |
| AAAATTAGAAATGGAGATTG+AGG | 0.501255 | 8.1:+2382564 | MS.gene012586:CDS |
| TCAGCCTTCCTTTGTTCCGA+AGG | 0.504609 | 8.1:-2380806 | None:intergenic |
| GGATGCTGGAGGAGAAAGAC+AGG | 0.505595 | 8.1:+2380970 | MS.gene012586:CDS |
| TAATGTCAATTTCATTGGCT+AGG | 0.506445 | 8.1:-2380887 | None:intergenic |
| CAGTTCAGACATTTATGGAT+GGG | 0.508021 | 8.1:+2380737 | MS.gene012586:CDS |
| GAAGAAGGAATGGAATTCAA+TGG | 0.511745 | 8.1:+2380704 | MS.gene012586:CDS |
| CATGTCCATAAGTAGGATGC+TGG | 0.514097 | 8.1:+2380956 | MS.gene012586:CDS |
| AACATCATGGGAAGAAGGAA+TGG | 0.514921 | 8.1:+2380694 | MS.gene012586:CDS |
| CGCAGGTTGAGAATTATGTC+TGG | 0.517832 | 8.1:+2380475 | MS.gene012586:CDS |
| AATTATGTCTGGCCATGGAC+AGG | 0.519380 | 8.1:+2380486 | MS.gene012586:CDS |
| CTCAGGTGCCCATATTGTGC+TGG | 0.519768 | 8.1:+2380258 | MS.gene012586:CDS |
| AACTAAACATCATGGGAAGA+AGG | 0.520666 | 8.1:+2380689 | MS.gene012586:CDS |
| CCAGTTCAGACATTTATGGA+TGG | 0.523268 | 8.1:+2380736 | MS.gene012586:CDS |
| TATCAGTGAGTCTGAGATTG+AGG | 0.524793 | 8.1:+2380167 | MS.gene012586:CDS |
| AATATTGGGACGAAAAGAAT+GGG | 0.525422 | 8.1:+2383070 | MS.gene012586:CDS |
| ATTTGCAAAGTACAGACCAT+TGG | 0.526943 | 8.1:+2380563 | MS.gene012586:CDS |
| CTTATTTAGATCTCTGCTCC+AGG | 0.528367 | 8.1:-2381314 | None:intergenic |
| GATCCTTCGCACCTCCTCAT+GGG | 0.531486 | 8.1:-2381233 | None:intergenic |
| ATGGAATTCAATGGACATGC+AGG | 0.532227 | 8.1:+2380713 | MS.gene012586:CDS |
| GGGGTTAAATGAAATGCTGA+AGG | 0.533320 | 8.1:+2383033 | MS.gene012586:intron |
| CGTGAAGATGATTATAATTG+TGG | 0.540581 | 8.1:+2380765 | MS.gene012586:CDS |
| TGATTCTGGATACTGGCTAA+AGG | 0.547223 | 8.1:+2380539 | MS.gene012586:CDS |
| TAGTAGACTTCATCAATGAC+TGG | 0.548076 | 8.1:+2380625 | MS.gene012586:CDS |
| CTTCATGGATGGTGACACTC+AGG | 0.551198 | 8.1:+2380599 | MS.gene012586:CDS |
| AAATGCGGAAGCTTGATACC+TGG | 0.551489 | 8.1:+2381296 | MS.gene012586:CDS |
| ACTGGAAGAGGACAAGAAGA+AGG | 0.555312 | 8.1:+2381369 | MS.gene012586:CDS |
| TTGAGAATTATGTCTGGCCA+TGG | 0.559406 | 8.1:+2380481 | MS.gene012586:CDS |
| AGAGGATCATGTCCATAAGT+AGG | 0.561441 | 8.1:+2380949 | MS.gene012586:CDS |
| ATGGGAGACCTTAATGCTGA+AGG | 0.562568 | 8.1:+2383088 | MS.gene012586:CDS |
| TGAATTGGAAGAAAGTTTGG+AGG | 0.564539 | 8.1:+2382672 | MS.gene012586:CDS |
| TGTCAACCAACCTGTACCGC+AGG | 0.572117 | 8.1:+2380458 | MS.gene012586:CDS |
| TCTGGCGCTCCTTGTCAATG+AGG | 0.572379 | 8.1:-2382717 | None:intergenic |
| GGTATGCTGAATTTGAGCTA+TGG | 0.573218 | 8.1:+2383110 | MS.gene012586:CDS |
| AGCAGACCAAATACCTCCCC+CGG | 0.574685 | 8.1:+2380422 | MS.gene012586:CDS |
| GACTTCATCAATGACTGGAA+TGG | 0.577060 | 8.1:+2380630 | MS.gene012586:CDS |
| CTACAACTCTGAAGAAGAGT+CGG | 0.583611 | 8.1:+2380143 | MS.gene012586:CDS |
| ACTTAAGCGCAAGAGAGGAT+AGG | 0.584806 | 8.1:+2383201 | MS.gene012586:CDS |
| GAAGATGATTATAATTGTGG+AGG | 0.585641 | 8.1:+2380768 | MS.gene012586:CDS |
| AGAAGTTATTACTTATATCG+TGG | 0.586754 | 8.1:+2383165 | MS.gene012586:CDS |
| AGTACCTTCGGAACAAAGGA+AGG | 0.587192 | 8.1:+2380802 | MS.gene012586:CDS |
| AGAGAGGCAGAAACTGGAAG+AGG | 0.587763 | 8.1:+2381357 | MS.gene012586:CDS |
| TGGGAGACCTTAATGCTGAA+GGG | 0.590968 | 8.1:+2383089 | MS.gene012586:CDS |
| AAGAATACATGGACATCCAA+TGG | 0.592903 | 8.1:-2380579 | None:intergenic |
| GACAGCTTCGACCAAAGCCG+GGG | 0.593808 | 8.1:-2380439 | None:intergenic |
| TTAACAATTATGCCTGTCCA+TGG | 0.594850 | 8.1:-2380498 | None:intergenic |
| GAACTTCAAGGAACAGAGGA+AGG | 0.596171 | 8.1:+2383132 | MS.gene012586:CDS |
| GTCCATGTATTCTTCATGGA+TGG | 0.597803 | 8.1:+2380588 | MS.gene012586:CDS |
| CCTTATAAGGAGTTAAAGGA+TGG | 0.598931 | 8.1:+2380204 | MS.gene012586:CDS |
| AGAATTTAAACGGCACACTC+AGG | 0.609073 | 8.1:+2380241 | MS.gene012586:CDS |
| GGGGAGTACCTTCGGAACAA+AGG | 0.609491 | 8.1:+2380798 | MS.gene012586:CDS |
| AAGCAACTTAAGCGCAAGAG+AGG | 0.619700 | 8.1:+2383196 | MS.gene012586:CDS |
| TGCAGTATAAGTATAATGAG+AGG | 0.621962 | 8.1:+2380931 | MS.gene012586:CDS |
| AAGCCCATGAGGAGGTGCGA+AGG | 0.622847 | 8.1:+2381230 | MS.gene012586:intron |
| AGGTACTAACCGATCAAGAG+AGG | 0.623269 | 8.1:+2381341 | MS.gene012586:CDS |
| TCTCAACCTGCGGTACAGGT+TGG | 0.626635 | 8.1:-2380464 | None:intergenic |
| CCTTTGAAACTAAACATCAT+GGG | 0.626908 | 8.1:+2380682 | MS.gene012586:CDS |
| AAGATGATTATAATTGTGGA+GGG | 0.627167 | 8.1:+2380769 | MS.gene012586:CDS |
| CATGCAACCGGAGTAAGCAA+AGG | 0.637786 | 8.1:+2380321 | MS.gene012586:CDS |
| GGGTTAAATGAAATGCTGAA+GGG | 0.639837 | 8.1:+2383034 | MS.gene012586:CDS |
| GAATCAAATCCTCATTGACA+AGG | 0.659917 | 8.1:+2382708 | MS.gene012586:CDS |
| GTCCATAAGTAGGATGCTGG+AGG | 0.664077 | 8.1:+2380959 | MS.gene012586:CDS |
| AAAACTTTGCCAGAGCGAGG+TGG | 0.669720 | 8.1:-2380377 | None:intergenic |
| ACAGCTTCGACCAAAGCCGG+GGG | 0.670168 | 8.1:-2380438 | None:intergenic |
| CAGAGATCTAAATAAGCGTG+AGG | 0.673270 | 8.1:+2381321 | MS.gene012586:CDS |
| CAGACATAATTCTCAACCTG+CGG | 0.676717 | 8.1:-2380474 | None:intergenic |
| TAATTGTGGAGGGCCAATCG+GGG | 0.679230 | 8.1:+2380779 | MS.gene012586:CDS |
| GCGGCGTAAAGCCCATGAGG+AGG | 0.682401 | 8.1:+2381222 | MS.gene012586:intron |
| TATGGAACTTCAAGGAACAG+AGG | 0.683112 | 8.1:+2383128 | MS.gene012586:CDS |
| TGTCCTTCTAGAAAGACTCG+AGG | 0.692197 | 8.1:+2382265 | MS.gene012586:intron |
| TATGCGGCGTAAAGCCCATG+AGG | 0.709522 | 8.1:+2381219 | MS.gene012586:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATAAAACTAATATT+GGG | + | chr8.1:2383056-2383075 | MS.gene012586:CDS | 10.0% |
| !!! | TTTTTAATCCAAAAAAATAA+AGG | - | chr8.1:2382097-2382116 | None:intergenic | 10.0% |
| !! | ATAAATTCTATTCATTAGAT+TGG | - | chr8.1:2381932-2381951 | None:intergenic | 15.0% |
| !! | ATGCATATATAAAATAAGAT+GGG | + | chr8.1:2381862-2381881 | MS.gene012586:intron | 15.0% |
| !! | GGTAATAATAAAACTAATAT+TGG | + | chr8.1:2383055-2383074 | MS.gene012586:CDS | 15.0% |
| !! | TCTAATGAATAGAATTTATT+TGG | + | chr8.1:2381933-2381952 | MS.gene012586:intron | 15.0% |
| !!! | AAAATCATCCTTTATTTTTT+TGG | + | chr8.1:2382086-2382105 | MS.gene012586:intron | 15.0% |
| !!! | TTATTTTATTATTAGAGTCT+AGG | + | chr8.1:2381194-2381213 | MS.gene012586:intron | 15.0% |
| !!! | TTTTTACAAATATATGGTTT+TGG | + | chr8.1:2381706-2381725 | MS.gene012586:intron | 15.0% |
| !! | ATTTGTAATGTCAATTTCAT+TGG | - | chr8.1:2380895-2380914 | None:intergenic | 20.0% |
| !! | CATGCATATATAAAATAAGA+TGG | + | chr8.1:2381861-2381880 | MS.gene012586:intron | 20.0% |
| !! | TCTAATGTTCTTGTAATATT+AGG | + | chr8.1:2381969-2381988 | MS.gene012586:intron | 20.0% |
| !! | TGAAAGAGAAAATAGAAAAT+CGG | + | chr8.1:2380860-2380879 | MS.gene012586:CDS | 20.0% |
| !! | TGAAATATCAATGTATACTT+TGG | + | chr8.1:2381670-2381689 | MS.gene012586:intron | 20.0% |
| !! | TGAAGCTATTAAGAAAAAAA+TGG | + | chr8.1:2382636-2382655 | MS.gene012586:CDS | 20.0% |
| !! | TGCATATATAAAATAAGATG+GGG | + | chr8.1:2381863-2381882 | MS.gene012586:intron | 20.0% |
| !!! | GTCTAATTTCTATTGTTTTA+GGG | + | chr8.1:2383013-2383032 | MS.gene012586:intron | 20.0% |
| !!! | TAAAAAAAAAGCACTTTGTT+AGG | - | chr8.1:2381550-2381569 | None:intergenic | 20.0% |
| !!! | TCTAATTTCTATTGTTTTAG+GGG | + | chr8.1:2383014-2383033 | MS.gene012586:intron | 20.0% |
| !!! | TGTCTAATTTCTATTGTTTT+AGG | + | chr8.1:2383012-2383031 | MS.gene012586:intron | 20.0% |
| !!! | TTTTAAATGTTTTTTGTTGC+TGG | + | chr8.1:2381425-2381444 | MS.gene012586:intron | 20.0% |
| ! | AAAAGTTGGATTCACTTAAA+GGG | - | chr8.1:2381584-2381603 | None:intergenic | 25.0% |
| ! | AAAATTAGAAATGGAGATTG+AGG | + | chr8.1:2382564-2382583 | MS.gene012586:CDS | 25.0% |
| ! | AAACACAAAAAATGAAGGAA+AGG | + | chr8.1:2381765-2381784 | MS.gene012586:intron | 25.0% |
| ! | AAATTAGACAGAGAAAAATG+AGG | - | chr8.1:2383002-2383021 | None:intergenic | 25.0% |
| ! | AAGATGATTATAATTGTGGA+GGG | + | chr8.1:2380769-2380788 | MS.gene012586:CDS | 25.0% |
| ! | AATTAGACAGAGAAAAATGA+GGG | - | chr8.1:2383001-2383020 | None:intergenic | 25.0% |
| ! | ACAAGAAGATAAAGGTTAAA+AGG | - | chr8.1:2382861-2382880 | None:intergenic | 25.0% |
| ! | AGAAGTTATTACTTATATCG+TGG | + | chr8.1:2383165-2383184 | MS.gene012586:CDS | 25.0% |
| ! | ATGAATTGGATGAAAAAATG+CGG | + | chr8.1:2381281-2381300 | MS.gene012586:CDS | 25.0% |
| ! | CACAAAGTGAAGAATTTAAA+CGG | + | chr8.1:2380231-2380250 | MS.gene012586:CDS | 25.0% |
| ! | GAAGAAAGAGTTCAAATATA+AGG | + | chr8.1:2380287-2380306 | MS.gene012586:CDS | 25.0% |
| ! | GAAGTAATATTTGAATCTTG+AGG | - | chr8.1:2382243-2382262 | None:intergenic | 25.0% |
| ! | TAAAAGTTGGATTCACTTAA+AGG | - | chr8.1:2381585-2381604 | None:intergenic | 25.0% |
| ! | TATAAACGAGAGTAAATAGA+GGG | - | chr8.1:2382374-2382393 | None:intergenic | 25.0% |
| ! | TATCCAAACACAAAAAATGA+AGG | + | chr8.1:2381760-2381779 | MS.gene012586:intron | 25.0% |
| ! | TCAAGAATACAAGAAGATAA+AGG | - | chr8.1:2382869-2382888 | None:intergenic | 25.0% |
| ! | TGCCAAACAAAAATTAGAAA+TGG | + | chr8.1:2382555-2382574 | MS.gene012586:CDS | 25.0% |
| ! | TTATAAACGAGAGTAAATAG+AGG | - | chr8.1:2382375-2382394 | None:intergenic | 25.0% |
| !! | CTCCATTTCTAATTTTTGTT+TGG | - | chr8.1:2382560-2382579 | None:intergenic | 25.0% |
| !! | TAAGTGAATCCAACTTTTAT+TGG | + | chr8.1:2381586-2381605 | MS.gene012586:intron | 25.0% |
| !! | TAGAAAAGCATAAATGATCA+AGG | + | chr8.1:2381822-2381841 | MS.gene012586:intron | 25.0% |
| !! | TCACAATAATCAAAAGCTTT+TGG | - | chr8.1:2381650-2381669 | None:intergenic | 25.0% |
| !! | TTTCTATTTTCTCTTTCAGA+TGG | - | chr8.1:2380858-2380877 | None:intergenic | 25.0% |
| !!! | TTTCCTTCATTTTTTGTGTT+TGG | - | chr8.1:2381766-2381785 | None:intergenic | 25.0% |
| !!! | TTTTGCCTTATTGTATGTAA+AGG | + | chr8.1:2381042-2381061 | MS.gene012586:intron | 25.0% |
| AATATTGGGACGAAAAGAAT+GGG | + | chr8.1:2383070-2383089 | MS.gene012586:CDS | 30.0% | |
| ACGAAATTTCGACATAAATG+AGG | - | chr8.1:2381741-2381760 | None:intergenic | 30.0% | |
| ATACTCTGACAAACCTTATA+AGG | + | chr8.1:2380191-2380210 | MS.gene012586:CDS | 30.0% | |
| ATGAAGGAAAGGAAAGTAAA+AGG | + | chr8.1:2381776-2381795 | MS.gene012586:intron | 30.0% | |
| ATTAGACAGAGAAAAATGAG+GGG | - | chr8.1:2383000-2383019 | None:intergenic | 30.0% | |
| CAAACCTTATAAGGAGTTAA+AGG | + | chr8.1:2380200-2380219 | MS.gene012586:CDS | 30.0% | |
| CGTGAAGATGATTATAATTG+TGG | + | chr8.1:2380765-2380784 | MS.gene012586:CDS | 30.0% | |
| CTTAAACAAGATCCTTCAAT+TGG | + | chr8.1:2382519-2382538 | MS.gene012586:CDS | 30.0% | |
| GAAGATGATTATAATTGTGG+AGG | + | chr8.1:2380768-2380787 | MS.gene012586:CDS | 30.0% | |
| GAGTAGAAAAAAACTTGCAT+AGG | + | chr8.1:2381126-2381145 | MS.gene012586:intron | 30.0% | |
| TAATATTGGGACGAAAAGAA+TGG | + | chr8.1:2383069-2383088 | MS.gene012586:CDS | 30.0% | |
| TACTGAATTGGAAGAAAGTT+TGG | + | chr8.1:2382669-2382688 | MS.gene012586:CDS | 30.0% | |
| TATATAAAATAAGATGGGGC+AGG | + | chr8.1:2381867-2381886 | MS.gene012586:intron | 30.0% | |
| TGCAGTATAAGTATAATGAG+AGG | + | chr8.1:2380931-2380950 | MS.gene012586:CDS | 30.0% | |
| TGGGATGAAAAAAAACACAT+CGG | - | chr8.1:2382155-2382174 | None:intergenic | 30.0% | |
| TTGCAAGTTATGAAACATCT+TGG | + | chr8.1:2382601-2382620 | MS.gene012586:CDS | 30.0% | |
| ! | ACTTATACTGCATTTTGTAG+AGG | - | chr8.1:2380923-2380942 | None:intergenic | 30.0% |
| ! | CAATTGAAGGATCTTGTTTA+AGG | - | chr8.1:2382521-2382540 | None:intergenic | 30.0% |
| ! | TAATGTCAATTTCATTGGCT+AGG | - | chr8.1:2380890-2380909 | None:intergenic | 30.0% |
| ! | TATGCTTTTCTACTTTGCTA+AGG | - | chr8.1:2381814-2381833 | None:intergenic | 30.0% |
| !! | AATCTATGCAACTTGTTAGT+TGG | - | chr8.1:2382898-2382917 | None:intergenic | 30.0% |
| !! | CCTTTGAAACTAAACATCAT+GGG | + | chr8.1:2380682-2380701 | MS.gene012586:CDS | 30.0% |
| !! | CTAATCTTTTAGAAGGACAA+TGG | - | chr8.1:2381475-2381494 | None:intergenic | 30.0% |
| !! | TCCTTTGAAACTAAACATCA+TGG | + | chr8.1:2380681-2380700 | MS.gene012586:CDS | 30.0% |
| !!! | CTGATGATTTTAAAGTATCG+AGG | - | chr8.1:2382205-2382224 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCCAGCACAATAT+GGG | - | chr8.1:2380269-2380288 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTCCAGCACAATA+TGG | - | chr8.1:2380270-2380289 | None:intergenic | 30.0% |
| AAACAGAAACGCCAAACAAA+AGG | + | chr8.1:2380350-2380369 | MS.gene012586:CDS | 35.0% | |
| AACTAAACATCATGGGAAGA+AGG | + | chr8.1:2380689-2380708 | MS.gene012586:CDS | 35.0% | |
| AAGAATACATGGACATCCAA+TGG | - | chr8.1:2380582-2380601 | None:intergenic | 35.0% | |
| AAGAGCAACCTTAATGATTC+TGG | + | chr8.1:2380525-2380544 | MS.gene012586:CDS | 35.0% | |
| ACCTTAATGATTCTGGATAC+TGG | + | chr8.1:2380532-2380551 | MS.gene012586:CDS | 35.0% | |
| AGAACAACAAAATATCACGC+AGG | - | chr8.1:2382944-2382963 | None:intergenic | 35.0% | |
| AGCAAGTAGAGATTAGAATG+TGG | - | chr8.1:2382175-2382194 | None:intergenic | 35.0% | |
| ATGGAGATTGAGGAACTAAA+AGG | + | chr8.1:2382574-2382593 | MS.gene012586:CDS | 35.0% | |
| ATTTGAGCTATGGAACTTCA+AGG | + | chr8.1:2383120-2383139 | MS.gene012586:CDS | 35.0% | |
| ATTTGCAAAGTACAGACCAT+TGG | + | chr8.1:2380563-2380582 | MS.gene012586:CDS | 35.0% | |
| CACAGCCTTTACATACAATA+AGG | - | chr8.1:2381050-2381069 | None:intergenic | 35.0% | |
| CAGTTCAGACATTTATGGAT+GGG | + | chr8.1:2380737-2380756 | MS.gene012586:CDS | 35.0% | |
| CCATCCTTTAACTCCTTATA+AGG | - | chr8.1:2380207-2380226 | None:intergenic | 35.0% | |
| CCTTATAAGGAGTTAAAGGA+TGG | + | chr8.1:2380204-2380223 | MS.gene012586:CDS | 35.0% | |
| GAAGAAGGAATGGAATTCAA+TGG | + | chr8.1:2380704-2380723 | MS.gene012586:CDS | 35.0% | |
| GAATCAAATCCTCATTGACA+AGG | + | chr8.1:2382708-2382727 | MS.gene012586:CDS | 35.0% | |
| GCAAGTAGAGATTAGAATGT+GGG | - | chr8.1:2382174-2382193 | None:intergenic | 35.0% | |
| GGAAAAGTTGCGTAATGAAT+TGG | + | chr8.1:2381267-2381286 | MS.gene012586:CDS | 35.0% | |
| GGGATGAAAAAAAACACATC+GGG | - | chr8.1:2382154-2382173 | None:intergenic | 35.0% | |
| GGGTTAAATGAAATGCTGAA+GGG | + | chr8.1:2383034-2383053 | MS.gene012586:CDS | 35.0% | |
| GTTCTGCTGTGAATATATTG+TGG | + | chr8.1:2382959-2382978 | MS.gene012586:intron | 35.0% | |
| TAGTAGACTTCATCAATGAC+TGG | + | chr8.1:2380625-2380644 | MS.gene012586:CDS | 35.0% | |
| TGAATTGGAAGAAAGTTTGG+AGG | + | chr8.1:2382672-2382691 | MS.gene012586:CDS | 35.0% | |
| TGGAGATTGAGGAACTAAAA+GGG | + | chr8.1:2382575-2382594 | MS.gene012586:CDS | 35.0% | |
| TTAACAATTATGCCTGTCCA+TGG | - | chr8.1:2380501-2380520 | None:intergenic | 35.0% | |
| TTAGACAGAGAAAAATGAGG+GGG | - | chr8.1:2382999-2383018 | None:intergenic | 35.0% | |
| TTCACTTAAAGGGAGTCAAT+AGG | - | chr8.1:2381574-2381593 | None:intergenic | 35.0% | |
| TTTGGTCTGCTTCATTTACT+AGG | - | chr8.1:2380413-2380432 | None:intergenic | 35.0% | |
| ! | CCCATGATGTTTAGTTTCAA+AGG | - | chr8.1:2380685-2380704 | None:intergenic | 35.0% |
| ! | CTTCACAATGCTTTTGTTGA+AGG | + | chr8.1:2380993-2381012 | MS.gene012586:CDS | 35.0% |
| ! | GACAGGTCTAATCTTTTAGA+AGG | - | chr8.1:2381482-2381501 | None:intergenic | 35.0% |
| ! | TATTAGAGTCTAGGAGTATG+CGG | + | chr8.1:2381203-2381222 | MS.gene012586:intron | 35.0% |
| ! | TCTTTTTCTCTCTGGTAGTT+TGG | - | chr8.1:2382493-2382512 | None:intergenic | 35.0% |
| !! | GGAAGAAATGAGTACTGAAT+TGG | + | chr8.1:2382657-2382676 | MS.gene012586:CDS | 35.0% |
| !!! | CTAGTTGCTTTTCCAATTGA+AGG | - | chr8.1:2382534-2382553 | None:intergenic | 35.0% |
| AACATCATGGGAAGAAGGAA+TGG | + | chr8.1:2380694-2380713 | MS.gene012586:CDS | 40.0% | |
| AAGATGGGGCAGGATTTAAT+TGG | + | chr8.1:2381877-2381896 | MS.gene012586:intron | 40.0% | |
| AGAATTTAAACGGCACACTC+AGG | + | chr8.1:2380241-2380260 | MS.gene012586:CDS | 40.0% | |
| AGAGGATCATGTCCATAAGT+AGG | + | chr8.1:2380949-2380968 | MS.gene012586:CDS | 40.0% | |
| AGGAAGGCTGAGAACAATTT+CGG | + | chr8.1:2380818-2380837 | MS.gene012586:CDS | 40.0% | |
| ATGGAATTCAATGGACATGC+AGG | + | chr8.1:2380713-2380732 | MS.gene012586:CDS | 40.0% | |
| ATTAGACCTGTCTTTGTCGA+TGG | + | chr8.1:2381490-2381509 | MS.gene012586:intron | 40.0% | |
| ATTCCTCGAGTCTTTCTAGA+AGG | - | chr8.1:2382271-2382290 | None:intergenic | 40.0% | |
| CACCATCCATGAAGAATACA+TGG | - | chr8.1:2380593-2380612 | None:intergenic | 40.0% | |
| CAGACATAATTCTCAACCTG+CGG | - | chr8.1:2380477-2380496 | None:intergenic | 40.0% | |
| CAGAGATCTAAATAAGCGTG+AGG | + | chr8.1:2381321-2381340 | MS.gene012586:CDS | 40.0% | |
| CAGGCTTATTGAAGAGCAAA+AGG | + | chr8.1:2382344-2382363 | MS.gene012586:CDS | 40.0% | |
| CCAGTTCAGACATTTATGGA+TGG | + | chr8.1:2380736-2380755 | MS.gene012586:CDS | 40.0% | |
| CCATCCATAAATGTCTGAAC+TGG | - | chr8.1:2380739-2380758 | None:intergenic | 40.0% | |
| CTACCAGAGAGAAAAAGAAG+AGG | + | chr8.1:2382495-2382514 | MS.gene012586:intron | 40.0% | |
| CTTATTTAGATCTCTGCTCC+AGG | - | chr8.1:2381317-2381336 | None:intergenic | 40.0% | |
| CTTGTAGTTCATCATTGCTC+TGG | - | chr8.1:2382738-2382757 | None:intergenic | 40.0% | |
| GACTTCATCAATGACTGGAA+TGG | + | chr8.1:2380630-2380649 | MS.gene012586:CDS | 40.0% | |
| GAGGAATGAGTTACTCTTGT+TGG | + | chr8.1:2382284-2382303 | MS.gene012586:CDS | 40.0% | |
| GATTTGATGCAACATGCAAC+CGG | + | chr8.1:2380309-2380328 | MS.gene012586:CDS | 40.0% | |
| GCCAGTATCCAGAATCATTA+AGG | - | chr8.1:2380536-2380555 | None:intergenic | 40.0% | |
| GGATGTCCATGTATTCTTCA+TGG | + | chr8.1:2380584-2380603 | MS.gene012586:CDS | 40.0% | |
| GGGGTTAAATGAAATGCTGA+AGG | + | chr8.1:2383033-2383052 | MS.gene012586:intron | 40.0% | |
| GGTAGAAGGCCAATAAAAGT+TGG | - | chr8.1:2381598-2381617 | None:intergenic | 40.0% | |
| GGTATGCTGAATTTGAGCTA+TGG | + | chr8.1:2383110-2383129 | MS.gene012586:CDS | 40.0% | |
| GTCCATGTATTCTTCATGGA+TGG | + | chr8.1:2380588-2380607 | MS.gene012586:CDS | 40.0% | |
| GTCTGCTTCATTTACTAGGT+CGG | - | chr8.1:2380409-2380428 | None:intergenic | 40.0% | |
| TAGCTGATGAGAATGTCTTC+AGG | + | chr8.1:2382325-2382344 | MS.gene012586:CDS | 40.0% | |
| TATAATTGTGGAGGGCCAAT+CGG | + | chr8.1:2380777-2380796 | MS.gene012586:CDS | 40.0% | |
| TATGGAACTTCAAGGAACAG+AGG | + | chr8.1:2383128-2383147 | MS.gene012586:CDS | 40.0% | |
| TCCAAATAGCAGATGGTAGA+AGG | - | chr8.1:2381612-2381631 | None:intergenic | 40.0% | |
| TTGAGAATTATGTCTGGCCA+TGG | + | chr8.1:2380481-2380500 | MS.gene012586:CDS | 40.0% | |
| ! | CTACAACTCTGAAGAAGAGT+CGG | + | chr8.1:2380143-2380162 | MS.gene012586:CDS | 40.0% |
| ! | GCTTTTGGCATATAGACTCT+CGG | - | chr8.1:2381635-2381654 | None:intergenic | 40.0% |
| ! | TATCAGTGAGTCTGAGATTG+AGG | + | chr8.1:2380167-2380186 | MS.gene012586:CDS | 40.0% |
| ! | TGATTCTGGATACTGGCTAA+AGG | + | chr8.1:2380539-2380558 | MS.gene012586:CDS | 40.0% |
| !! | GTTACTCTTGTTGGCTTCAA+AGG | + | chr8.1:2382293-2382312 | MS.gene012586:CDS | 40.0% |
| AAAAACACATCGGGCAGATG+TGG | - | chr8.1:2382145-2382164 | None:intergenic | 45.0% | |
| AAATGCGGAAGCTTGATACC+TGG | + | chr8.1:2381296-2381315 | MS.gene012586:CDS | 45.0% | |
| AAGCAACTTAAGCGCAAGAG+AGG | + | chr8.1:2383196-2383215 | MS.gene012586:CDS | 45.0% | |
| AAGGCTGTGTGCTTCATGTT+TGG | + | chr8.1:2381061-2381080 | MS.gene012586:intron | 45.0% | |
| AATTATGTCTGGCCATGGAC+AGG | + | chr8.1:2380486-2380505 | MS.gene012586:CDS | 45.0% | |
| ACTGGAAGAGGACAAGAAGA+AGG | + | chr8.1:2381369-2381388 | MS.gene012586:CDS | 45.0% | |
| AGGATACCATCGACAAAGAC+AGG | - | chr8.1:2381499-2381518 | None:intergenic | 45.0% | |
| AGGCAAATCAAGAGCAACCA+AGG | - | chr8.1:2381530-2381549 | None:intergenic | 45.0% | |
| AGGTACTAACCGATCAAGAG+AGG | + | chr8.1:2381341-2381360 | MS.gene012586:CDS | 45.0% | |
| AGTACCTTCGGAACAAAGGA+AGG | + | chr8.1:2380802-2380821 | MS.gene012586:CDS | 45.0% | |
| ATAATTGTGGAGGGCCAATC+GGG | + | chr8.1:2380778-2380797 | MS.gene012586:CDS | 45.0% | |
| ATGGGAGACCTTAATGCTGA+AGG | + | chr8.1:2383088-2383107 | MS.gene012586:CDS | 45.0% | |
| CAGCATACCCTTCAGCATTA+AGG | - | chr8.1:2383099-2383118 | None:intergenic | 45.0% | |
| CAGGCCAGTTCAGACATTTA+TGG | + | chr8.1:2380732-2380751 | MS.gene012586:CDS | 45.0% | |
| CAGTTTCTGCCTCTCTTGAT+CGG | - | chr8.1:2381353-2381372 | None:intergenic | 45.0% | |
| CATGTCCATAAGTAGGATGC+TGG | + | chr8.1:2380956-2380975 | MS.gene012586:CDS | 45.0% | |
| GAACTTCAAGGAACAGAGGA+AGG | + | chr8.1:2383132-2383151 | MS.gene012586:CDS | 45.0% | |
| GCCTTCTACCATCTGCTATT+TGG | + | chr8.1:2381608-2381627 | MS.gene012586:intron | 45.0% | |
| TAATTCTCAACCTGCGGTAC+AGG | - | chr8.1:2380471-2380490 | None:intergenic | 45.0% | |
| TCAAGAGCAACCAAGGACAT+TGG | - | chr8.1:2381523-2381542 | None:intergenic | 45.0% | |
| TGCTGAACCTTTGCTTACTC+CGG | - | chr8.1:2380331-2380350 | None:intergenic | 45.0% | |
| TGGGAGACCTTAATGCTGAA+GGG | + | chr8.1:2383089-2383108 | MS.gene012586:CDS | 45.0% | |
| TGGTATCCTACCAATGTCCT+TGG | + | chr8.1:2381510-2381529 | MS.gene012586:intron | 45.0% | |
| ! | AGGCCTCTTCTTTTTCTCTC+TGG | - | chr8.1:2382501-2382520 | None:intergenic | 45.0% |
| ! | CGCAGGTTGAGAATTATGTC+TGG | + | chr8.1:2380475-2380494 | MS.gene012586:CDS | 45.0% |
| ! | GCGAATGTCTTCTGCTGATT+TGG | + | chr8.1:2382463-2382482 | MS.gene012586:intron | 45.0% |
| ! | TGTCCTTCTAGAAAGACTCG+AGG | + | chr8.1:2382265-2382284 | MS.gene012586:intron | 45.0% |
| !! | GAGGTGGTTTGCCTTTTGTT+TGG | - | chr8.1:2380364-2380383 | None:intergenic | 45.0% |
| !!! | CGGGCAGATGTGGTTTTTTA+TGG | - | chr8.1:2382135-2382154 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTACAAATATA+TGG | + | chr8.1:2381700-2381719 | MS.gene012586:intron | 5.0% |
| AAAACTTTGCCAGAGCGAGG+TGG | - | chr8.1:2380380-2380399 | None:intergenic | 50.0% | |
| AGAGAGGCAGAAACTGGAAG+AGG | + | chr8.1:2381357-2381376 | MS.gene012586:CDS | 50.0% | |
| CATGCAACCGGAGTAAGCAA+AGG | + | chr8.1:2380321-2380340 | MS.gene012586:CDS | 50.0% | |
| CCAAAAACTTTGCCAGAGCG+AGG | - | chr8.1:2380383-2380402 | None:intergenic | 50.0% | |
| CGATCAAGAGAGGCAGAAAC+TGG | + | chr8.1:2381351-2381370 | MS.gene012586:CDS | 50.0% | |
| CTCCTCCAGCATCCTACTTA+TGG | - | chr8.1:2380964-2380983 | None:intergenic | 50.0% | |
| CTCTCGGTCCAAATAGCAGA+TGG | - | chr8.1:2381619-2381638 | None:intergenic | 50.0% | |
| CTTCATGGATGGTGACACTC+AGG | + | chr8.1:2380599-2380618 | MS.gene012586:CDS | 50.0% | |
| GAGCAACCAAGGACATTGGT+AGG | - | chr8.1:2381519-2381538 | None:intergenic | 50.0% | |
| GCGAAGGATCTTGGAAGAAC+AGG | + | chr8.1:2381246-2381265 | MS.gene012586:CDS | 50.0% | |
| GTCCATAAGTAGGATGCTGG+AGG | + | chr8.1:2380959-2380978 | MS.gene012586:CDS | 50.0% | |
| TAATTGTGGAGGGCCAATCG+GGG | + | chr8.1:2380779-2380798 | MS.gene012586:CDS | 50.0% | |
| TCAGCCTTCCTTTGTTCCGA+AGG | - | chr8.1:2380809-2380828 | None:intergenic | 50.0% | |
| TTGACAGCTTCGACCAAAGC+CGG | - | chr8.1:2380444-2380463 | None:intergenic | 50.0% | |
| ! | CCTCGCTCTGGCAAAGTTTT+TGG | + | chr8.1:2380380-2380399 | MS.gene012586:CDS | 50.0% |
| AAAGGCAAACCACCTCGCTC+TGG | + | chr8.1:2380368-2380387 | MS.gene012586:CDS | 55.0% | |
| AGATCCTTCGCACCTCCTCA+TGG | - | chr8.1:2381237-2381256 | None:intergenic | 55.0% | |
| AGCAGACCAAATACCTCCCC+CGG | + | chr8.1:2380422-2380441 | MS.gene012586:CDS | 55.0% | |
| CTCAGGTGCCCATATTGTGC+TGG | + | chr8.1:2380258-2380277 | MS.gene012586:CDS | 55.0% | |
| GATCCTTCGCACCTCCTCAT+GGG | - | chr8.1:2381236-2381255 | None:intergenic | 55.0% | |
| GGATGCTGGAGGAGAAAGAC+AGG | + | chr8.1:2380970-2380989 | MS.gene012586:CDS | 55.0% | |
| TATGCGGCGTAAAGCCCATG+AGG | + | chr8.1:2381219-2381238 | MS.gene012586:intron | 55.0% | |
| TCTCAACCTGCGGTACAGGT+TGG | - | chr8.1:2380467-2380486 | None:intergenic | 55.0% | |
| TCTGGCGCTCCTTGTCAATG+AGG | - | chr8.1:2382720-2382739 | None:intergenic | 55.0% | |
| TGACAGCTTCGACCAAAGCC+GGG | - | chr8.1:2380443-2380462 | None:intergenic | 55.0% | |
| TGTCAACCAACCTGTACCGC+AGG | + | chr8.1:2380458-2380477 | MS.gene012586:CDS | 55.0% | |
| ! | TGAGGAGGTGCGAAGGATCT+TGG | + | chr8.1:2381237-2381256 | MS.gene012586:CDS | 55.0% |
| !! | GGGGAGTACCTTCGGAACAA+AGG | + | chr8.1:2380798-2380817 | MS.gene012586:CDS | 55.0% |
| !! | TTCCGAAGGTACTCCCCGAT+TGG | - | chr8.1:2380795-2380814 | None:intergenic | 55.0% |
| ACAGCTTCGACCAAAGCCGG+GGG | - | chr8.1:2380441-2380460 | None:intergenic | 60.0% | |
| CCAAATACCTCCCCCGGCTT+TGG | + | chr8.1:2380428-2380447 | MS.gene012586:CDS | 60.0% | |
| GACAGCTTCGACCAAAGCCG+GGG | - | chr8.1:2380442-2380461 | None:intergenic | 60.0% | |
| ! | AAGCCCATGAGGAGGTGCGA+AGG | + | chr8.1:2381230-2381249 | MS.gene012586:intron | 60.0% |
| !! | CCAAAGCCGGGGGAGGTATT+TGG | - | chr8.1:2380431-2380450 | None:intergenic | 60.0% |
| !! | GGCCAATCGGGGAGTACCTT+CGG | + | chr8.1:2380790-2380809 | MS.gene012586:CDS | 60.0% |
| GCGGCGTAAAGCCCATGAGG+AGG | + | chr8.1:2381222-2381241 | MS.gene012586:intron | 65.0% | |
| GCTTCGACCAAAGCCGGGGG+AGG | - | chr8.1:2380438-2380457 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 2380138 | 2383222 | 2380138 | ID=MS.gene012586 |
| chr8.1 | mRNA | 2380138 | 2383222 | 2380138 | ID=MS.gene012586.t1;Parent=MS.gene012586 |
| chr8.1 | exon | 2380138 | 2381014 | 2380138 | ID=MS.gene012586.t1.exon1;Parent=MS.gene012586.t1 |
| chr8.1 | CDS | 2380138 | 2381014 | 2380138 | ID=cds.MS.gene012586.t1;Parent=MS.gene012586.t1 |
| chr8.1 | exon | 2381233 | 2381390 | 2381233 | ID=MS.gene012586.t1.exon2;Parent=MS.gene012586.t1 |
| chr8.1 | CDS | 2381233 | 2381390 | 2381233 | ID=cds.MS.gene012586.t1;Parent=MS.gene012586.t1 |
| chr8.1 | exon | 2382276 | 2382365 | 2382276 | ID=MS.gene012586.t1.exon3;Parent=MS.gene012586.t1 |
| chr8.1 | CDS | 2382276 | 2382365 | 2382276 | ID=cds.MS.gene012586.t1;Parent=MS.gene012586.t1 |
| chr8.1 | exon | 2382502 | 2382780 | 2382502 | ID=MS.gene012586.t1.exon4;Parent=MS.gene012586.t1 |
| chr8.1 | CDS | 2382502 | 2382780 | 2382502 | ID=cds.MS.gene012586.t1;Parent=MS.gene012586.t1 |
| chr8.1 | exon | 2383034 | 2383222 | 2383034 | ID=MS.gene012586.t1.exon5;Parent=MS.gene012586.t1 |
| chr8.1 | CDS | 2383034 | 2383222 | 2383034 | ID=cds.MS.gene012586.t1;Parent=MS.gene012586.t1 |
| Gene Sequence |
| Protein sequence |
