Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000890.t1 | XP_013450482.1 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 4.80E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000890.t1 | I6YGS0 | 39.4 | 320 | 174 | 8 | 7 | 316 | 7 | 316 | 3.9e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000890.t1 | A0A072UFD9 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 3.5e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76453 | MS.gene000890 | PPI |
| MS.gene025707 | MS.gene000890 | PPI |
| MS.gene035373 | MS.gene000890 | PPI |
| MS.gene000890 | MS.gene07001 | PPI |
| MS.gene035367 | MS.gene000890 | PPI |
| MS.gene000890 | MS.gene066361 | PPI |
| MS.gene000890 | MS.gene035371 | PPI |
| MS.gene77823 | MS.gene000890 | PPI |
| MS.gene000890 | MS.gene22955 | PPI |
| MS.gene071504 | MS.gene000890 | PPI |
| MS.gene012063 | MS.gene000890 | PPI |
| MS.gene000890 | MS.gene071500 | PPI |
| MS.gene071502 | MS.gene000890 | PPI |
| MS.gene066360 | MS.gene000890 | PPI |
| MS.gene89620 | MS.gene000890 | PPI |
| MS.gene000890 | MS.gene041604 | PPI |
| MS.gene035369 | MS.gene000890 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000890.t1 | MTR_7g112963 | 95.298 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 0.0 | 629 |
| MS.gene000890.t1 | MTR_7g112960 | 90.282 | 319 | 31 | 0 | 1 | 319 | 1 | 319 | 0.0 | 603 |
| MS.gene000890.t1 | MTR_7g112970 | 88.715 | 319 | 33 | 1 | 1 | 319 | 1 | 316 | 0.0 | 585 |
| MS.gene000890.t1 | MTR_7g113020 | 79.310 | 319 | 66 | 0 | 1 | 319 | 1 | 319 | 0.0 | 531 |
| MS.gene000890.t1 | MTR_7g113050 | 77.882 | 321 | 67 | 2 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene000890.t1 | MTR_7g113030 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MS.gene000890.t1 | MTR_7g113010 | 85.765 | 281 | 40 | 0 | 1 | 281 | 1 | 281 | 0.0 | 518 |
| MS.gene000890.t1 | MTR_7g112620 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MS.gene000890.t1 | MTR_7g112615 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 513 |
| MS.gene000890.t1 | MTR_4g005160 | 67.077 | 325 | 98 | 5 | 1 | 319 | 1 | 322 | 8.61e-161 | 451 |
| MS.gene000890.t1 | MTR_4g120240 | 62.617 | 321 | 116 | 3 | 1 | 319 | 37 | 355 | 3.53e-148 | 421 |
| MS.gene000890.t1 | MTR_7g108825 | 61.875 | 320 | 118 | 3 | 1 | 319 | 1 | 317 | 1.99e-143 | 407 |
| MS.gene000890.t1 | MTR_7g113050 | 77.083 | 240 | 51 | 2 | 1 | 238 | 1 | 238 | 9.76e-135 | 382 |
| MS.gene000890.t1 | MTR_7g112615 | 75.630 | 238 | 58 | 0 | 1 | 238 | 1 | 238 | 1.12e-133 | 379 |
| MS.gene000890.t1 | MTR_8g076680 | 47.678 | 323 | 157 | 5 | 1 | 319 | 3 | 317 | 1.07e-106 | 314 |
| MS.gene000890.t1 | MTR_7g112615 | 82.286 | 175 | 28 | 1 | 1 | 172 | 1 | 175 | 8.72e-103 | 299 |
| MS.gene000890.t1 | MTR_7g108825 | 59.833 | 239 | 92 | 3 | 1 | 238 | 1 | 236 | 5.40e-99 | 291 |
| MS.gene000890.t1 | MTR_1g083480 | 76.101 | 159 | 34 | 2 | 1 | 156 | 1 | 158 | 6.31e-87 | 258 |
| MS.gene000890.t1 | MTR_8g076680 | 47.521 | 242 | 117 | 3 | 1 | 238 | 3 | 238 | 1.07e-81 | 248 |
| MS.gene000890.t1 | MTR_7g112910 | 49.402 | 251 | 68 | 7 | 72 | 319 | 1 | 195 | 1.72e-68 | 212 |
| MS.gene000890.t1 | MTR_4g089060 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 2.23e-65 | 208 |
| MS.gene000890.t1 | MTR_2g090240 | 35.202 | 321 | 194 | 6 | 1 | 318 | 1 | 310 | 1.58e-64 | 206 |
| MS.gene000890.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 2.70e-64 | 206 |
| MS.gene000890.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 7.70e-64 | 204 |
| MS.gene000890.t1 | MTR_4g089060 | 33.333 | 348 | 190 | 7 | 1 | 318 | 1 | 336 | 2.51e-60 | 196 |
| MS.gene000890.t1 | MTR_3g024250 | 82.075 | 106 | 19 | 0 | 47 | 152 | 2 | 107 | 3.04e-57 | 181 |
| MS.gene000890.t1 | MTR_4g089060 | 37.768 | 233 | 136 | 3 | 1 | 231 | 1 | 226 | 6.48e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000890.t1 | AT3G05600 | 63.077 | 325 | 113 | 4 | 1 | 319 | 1 | 324 | 1.17e-153 | 434 |
| MS.gene000890.t1 | AT4G02340 | 60.312 | 320 | 122 | 3 | 1 | 319 | 1 | 316 | 1.72e-145 | 413 |
| MS.gene000890.t1 | AT4G15960 | 53.538 | 325 | 144 | 3 | 1 | 319 | 51 | 374 | 1.09e-127 | 369 |
| MS.gene000890.t1 | AT2G26740 | 60.248 | 322 | 121 | 4 | 4 | 319 | 1 | 321 | 1.61e-127 | 367 |
| MS.gene000890.t1 | AT2G26750 | 58.255 | 321 | 128 | 4 | 4 | 319 | 1 | 320 | 1.06e-122 | 355 |
| MS.gene000890.t1 | AT3G05600 | 65.164 | 244 | 78 | 4 | 1 | 238 | 1 | 243 | 1.25e-114 | 331 |
| MS.gene000890.t1 | AT4G15955 | 51.692 | 325 | 121 | 5 | 5 | 319 | 6 | 304 | 2.30e-112 | 328 |
| MS.gene000890.t1 | AT3G51000 | 48.758 | 322 | 152 | 8 | 4 | 319 | 5 | 319 | 2.00e-106 | 313 |
| MS.gene000890.t1 | AT4G15955 | 60.694 | 173 | 58 | 2 | 5 | 167 | 6 | 178 | 5.71e-73 | 223 |
| MS.gene000890.t1 | AT4G15955 | 58.382 | 173 | 62 | 2 | 5 | 167 | 6 | 178 | 6.13e-69 | 213 |
Find 89 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:+3849056 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.4:-3847221 | MS.gene000890:CDS |
| ATAACCACTTCCTCCAAATT+TGG | 0.220764 | 7.4:+3847208 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.231114 | 7.4:+3849002 | None:intergenic |
| TGATTTCCTCGGCAGCTTCT+TGG | 0.237229 | 7.4:+3847158 | None:intergenic |
| ATGAGATAATATGCCTTCTT+TGG | 0.258836 | 7.4:+3848082 | None:intergenic |
| GATTTAGTTTACACTTCTTT+TGG | 0.261386 | 7.4:-3847274 | MS.gene000890:CDS |
| CGCCACCAGATTGCTGCTCT+TGG | 0.265149 | 7.4:-3849278 | MS.gene000890:CDS |
| GTGACAGGAACCCGGGAAAA+TGG | 0.290473 | 7.4:-3848186 | MS.gene000890:intron |
| GTACAATGCCCCTCCCTTCT+TGG | 0.292567 | 7.4:-3848046 | MS.gene000890:CDS |
| CTTCCTTGTAGCTCATGATT+GGG | 0.316992 | 7.4:-3849114 | MS.gene000890:CDS |
| GAAGATTGTGTAACTACTAA+TGG | 0.366861 | 7.4:+3849190 | None:intergenic |
| TCTTCCTTGTAGCTCATGAT+TGG | 0.373039 | 7.4:-3849115 | MS.gene000890:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:+3849299 | None:intergenic |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.389532 | 7.4:-3849002 | MS.gene000890:CDS |
| TCGCCGTAACCACGGAGATC+TGG | 0.394426 | 7.4:+3849230 | None:intergenic |
| TTTGAAAAGACAGGATTTAG+TGG | 0.395852 | 7.4:-3847987 | MS.gene000890:CDS |
| TTTGGATTTCTGGGTAAATA+CGG | 0.407798 | 7.4:+3849020 | None:intergenic |
| ACCGCTCTCGATGTATTGTT+TGG | 0.413172 | 7.4:+3847249 | None:intergenic |
| TTATTATATCTGCAGATTCC+AGG | 0.414957 | 7.4:-3848955 | MS.gene000890:intron |
| GCTTCCAAATTTGAAAAGAC+AGG | 0.423519 | 7.4:-3847996 | MS.gene000890:CDS |
| GAAGTTCATCATAGGTGATC+TGG | 0.427789 | 7.4:-3847296 | MS.gene000890:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:+3849057 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:-3849301 | MS.gene000890:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.436037 | 7.4:-3849101 | MS.gene000890:CDS |
| CCTTCTTTGGACAGGATTGG+TGG | 0.444630 | 7.4:+3848095 | None:intergenic |
| GCTCCAGATCTCCGTGGTTA+CGG | 0.448429 | 7.4:-3849233 | MS.gene000890:CDS |
| TAGTTACACAATCTTCCATT+TGG | 0.454984 | 7.4:-3849183 | MS.gene000890:CDS |
| ATGCTTACAAGTCGTAATCC+TGG | 0.458065 | 7.4:-3848119 | MS.gene000890:CDS |
| ATAATATGCCTTCTTTGGAC+AGG | 0.459599 | 7.4:+3848087 | None:intergenic |
| GGGAGCCAAGAGCAGCAATC+TGG | 0.464162 | 7.4:+3849273 | None:intergenic |
| ACAGCACGCATTCCATCAAC+AGG | 0.466950 | 7.4:+3848990 | None:intergenic |
| ATTGCTGCTCTTGGCTCCCT+CGG | 0.472828 | 7.4:-3849269 | MS.gene000890:CDS |
| ATGCCTTCTTTGGACAGGAT+TGG | 0.476879 | 7.4:+3848092 | None:intergenic |
| GAGCTCACGGCAGCATGGAC+CGG | 0.477692 | 7.4:-3847340 | MS.gene000890:CDS |
| GTACCAGTGAAGTTCATCAT+AGG | 0.483596 | 7.4:-3847304 | MS.gene000890:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:-3849359 | MS.gene000890:CDS |
| GATGGAATGCGTGCTGTGTA+TGG | 0.487041 | 7.4:-3848984 | MS.gene000890:CDS |
| CAACGATGTCACCCACCAAA+TGG | 0.489958 | 7.4:+3849168 | None:intergenic |
| TGTGCCAAATTTGGAGGAAG+TGG | 0.500333 | 7.4:-3847212 | MS.gene000890:CDS |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:-3849310 | MS.gene000890:CDS |
| TTGGACAGGATTGGTGGCCC+AGG | 0.507255 | 7.4:+3848101 | None:intergenic |
| ATGGCCTTGATCAACAGTTC+TGG | 0.508152 | 7.4:+3848140 | None:intergenic |
| TCTTCTTGTGAGAGCCAAGA+AGG | 0.512333 | 7.4:+3848032 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+AGG | 0.513488 | 7.4:+3849326 | None:intergenic |
| TGCTTACAAGTCGTAATCCT+GGG | 0.514561 | 7.4:-3848118 | MS.gene000890:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.4:-3849386 | MS.gene000890:CDS |
| CAATCCATGTGACAGGAACC+CGG | 0.522947 | 7.4:-3848194 | MS.gene000890:intron |
| TGGTACTTTAATTTGTGCTC+CGG | 0.523809 | 7.4:+3847321 | None:intergenic |
| TACACAATCTTCCATTTGGT+GGG | 0.524970 | 7.4:-3849179 | MS.gene000890:CDS |
| CCACCAATCCTGTCCAAAGA+AGG | 0.525317 | 7.4:-3848095 | MS.gene000890:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.4:-3847218 | MS.gene000890:CDS |
| GTGTAACTACTAATGGAAGC+TGG | 0.533389 | 7.4:+3849197 | None:intergenic |
| ACAAAGATACCAACCAATGA+TGG | 0.536291 | 7.4:+3849088 | None:intergenic |
| CACCCCAATCATGAGCTACA+AGG | 0.540560 | 7.4:+3849111 | None:intergenic |
| TTCCTTGTAGCTCATGATTG+GGG | 0.541290 | 7.4:-3849113 | MS.gene000890:CDS |
| TTACACAATCTTCCATTTGG+TGG | 0.541545 | 7.4:-3849180 | MS.gene000890:CDS |
| GGGCATTGTACTTGAAACGC+TGG | 0.542022 | 7.4:+3848058 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:-3849350 | MS.gene000890:CDS |
| GAGGAAGTGGTTATACAGAA+AGG | 0.551271 | 7.4:-3847199 | MS.gene000890:CDS |
| AATCCATGTGACAGGAACCC+GGG | 0.551511 | 7.4:-3848193 | MS.gene000890:intron |
| GTTGCTCTCATCGACTCACT+TGG | 0.552314 | 7.4:-3849149 | MS.gene000890:CDS |
| TCACCTATGATGAACTTCAC+TGG | 0.553123 | 7.4:+3847301 | None:intergenic |
| TTGTGAGAGCCAAGAAGGGA+GGG | 0.554852 | 7.4:+3848037 | None:intergenic |
| ATGGAAGCTGAAATTGCTAA+AGG | 0.559276 | 7.4:-3848167 | MS.gene000890:CDS |
| TAGTCCAGAACTGTTGATCA+AGG | 0.560762 | 7.4:-3848144 | MS.gene000890:CDS |
| CGGAACACTGAGACAAACAT+AGG | 0.567344 | 7.4:+3849040 | None:intergenic |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.4:-3849097 | MS.gene000890:CDS |
| AGCCAAGAGCAGCAATCTGG+TGG | 0.583237 | 7.4:+3849276 | None:intergenic |
| AATGTGATTACTGATTTCCT+CGG | 0.590060 | 7.4:+3847147 | None:intergenic |
| TGTGAGAGCCAAGAAGGGAG+GGG | 0.590664 | 7.4:+3848038 | None:intergenic |
| GGCATTGTACTTGAAACGCT+GGG | 0.594338 | 7.4:+3848059 | None:intergenic |
| ACTAATGGAAGCTGGAGCAT+CGG | 0.595210 | 7.4:+3849205 | None:intergenic |
| CATCGGTGTCGCCGTAACCA+CGG | 0.597704 | 7.4:+3849222 | None:intergenic |
| CTTGTGAGAGCCAAGAAGGG+AGG | 0.599078 | 7.4:+3848036 | None:intergenic |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.611461 | 7.4:-3847345 | MS.gene000890:CDS |
| GAAAAGACAGGATTTAGTGG+TGG | 0.611798 | 7.4:-3847984 | MS.gene000890:CDS |
| TAACAGAAATTGGGAGCTCA+CGG | 0.614147 | 7.4:-3847353 | MS.gene000890:intron |
| CAACAACCAAGAAGCTGCCG+AGG | 0.622555 | 7.4:-3847164 | MS.gene000890:CDS |
| CTTCTTGTGAGAGCCAAGAA+GGG | 0.624050 | 7.4:+3848033 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:+3849312 | None:intergenic |
| AGGATTACGACTTGTAAGCA+TGG | 0.633672 | 7.4:+3848121 | None:intergenic |
| GAGCAACAGCACAGTAACCG+AGG | 0.650868 | 7.4:+3849252 | None:intergenic |
| AAACAATACATCGAGAGCGG+TGG | 0.675908 | 7.4:-3847247 | MS.gene000890:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:-3849396 | MS.gene000890:CDS |
| AGCAACAGCACAGTAACCGA+GGG | 0.678247 | 7.4:+3849253 | None:intergenic |
| AGTGGTTATACAGAAAGGTG+TGG | 0.683843 | 7.4:-3847194 | MS.gene000890:CDS |
| ACCAAACAATACATCGAGAG+CGG | 0.693164 | 7.4:-3847250 | MS.gene000890:CDS |
| GCTGTTGCTCCAGATCTCCG+TGG | 0.735697 | 7.4:-3849239 | MS.gene000890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAATTCTTAAAA+TGG | + | chr7.4:3847993-3848012 | None:intergenic | 10.0% |
| !! | AATTAAATCCTAAATTCATT+TGG | - | chr7.4:3848052-3848071 | MS.gene000890:CDS | 15.0% |
| !!! | TTAGGATTTAATTTTATGTA+CGG | + | chr7.4:3848045-3848064 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTGATAAATAAA+TGG | - | chr7.4:3848099-3848118 | MS.gene000890:CDS | 15.0% |
| !! | AAATCAATAAGCTCAAATTA+CGG | + | chr7.4:3847800-3847819 | None:intergenic | 20.0% |
| !! | ATGAGTTTAATCTAAACTTT+AGG | - | chr7.4:3848076-3848095 | MS.gene000890:CDS | 20.0% |
| !! | TATAAATTACAAGAGAATGA+TGG | + | chr7.4:3848652-3848671 | None:intergenic | 20.0% |
| !! | TTATAATAATTGCTGAGATA+AGG | - | chr7.4:3848894-3848913 | MS.gene000890:intron | 20.0% |
| !!! | AGACATTTTAAGTTTTTCTT+TGG | + | chr7.4:3847857-3847876 | None:intergenic | 20.0% |
| !!! | GTTATACACTAACTAAATTT+TGG | + | chr7.4:3848163-3848182 | None:intergenic | 20.0% |
| !!! | GTTTTATGTTAACAGAAATT+GGG | - | chr7.4:3849162-3849181 | MS.gene000890:CDS | 20.0% |
| !!! | TGTTTTATGTTAACAGAAAT+TGG | - | chr7.4:3849161-3849180 | MS.gene000890:CDS | 20.0% |
| !!! | TTAACATAAAACAAAAGCAT+TGG | + | chr7.4:3849154-3849173 | None:intergenic | 20.0% |
| !!! | TTTTAAAATCAAGGATTAAG+AGG | + | chr7.4:3848852-3848871 | None:intergenic | 20.0% |
| ! | AAAAATGAAAAATACGAACC+TGG | + | chr7.4:3847590-3847609 | None:intergenic | 25.0% |
| ! | AACTCATACCAAATGAATTT+AGG | + | chr7.4:3848063-3848082 | None:intergenic | 25.0% |
| ! | ACAATCTTAAATTTGATGGA+AGG | - | chr7.4:3849072-3849091 | MS.gene000890:CDS | 25.0% |
| ! | ATTGGATTACAAATTTGACA+AGG | + | chr7.4:3848139-3848158 | None:intergenic | 25.0% |
| ! | ATTTATACAAAACCAATCCA+AGG | - | chr7.4:3848665-3848684 | MS.gene000890:intron | 25.0% |
| ! | CAAAAACCAAAAGATAAAGT+GGG | + | chr7.4:3847777-3847796 | None:intergenic | 25.0% |
| ! | GATTAATTCTACTTGAACTA+TGG | - | chr7.4:3847641-3847660 | MS.gene000890:intron | 25.0% |
| ! | TCTGACAATCTTAAATTTGA+TGG | - | chr7.4:3849068-3849087 | MS.gene000890:CDS | 25.0% |
| ! | TGGTTCAACAAATATCTATA+TGG | + | chr7.4:3847973-3847992 | None:intergenic | 25.0% |
| !! | AAATCCTGTCTTTTCAAATT+TGG | + | chr7.4:3848535-3848554 | None:intergenic | 25.0% |
| !!! | AAGTTTTAGTTTTTTGCTTG+TGG | - | chr7.4:3847693-3847712 | MS.gene000890:intron | 25.0% |
| !!! | CACTAACTAAATTTTGGTAT+TGG | + | chr7.4:3848157-3848176 | None:intergenic | 25.0% |
| !!! | GATTTAGTTTACACTTCTTT+TGG | - | chr7.4:3849250-3849269 | MS.gene000890:CDS | 25.0% |
| !!! | TGAGCTTATTGATTTTAAAG+TGG | - | chr7.4:3847805-3847824 | MS.gene000890:intron | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.4:3847165-3847184 | MS.gene000890:CDS | 30.0% | |
| ATGAGATAATATGCCTTCTT+TGG | + | chr7.4:3848445-3848464 | None:intergenic | 30.0% | |
| CTTGATAAATAAATGGAGAC+TGG | - | chr7.4:3848106-3848125 | MS.gene000890:CDS | 30.0% | |
| GAAGATTGTGTAACTACTAA+TGG | + | chr7.4:3847337-3847356 | None:intergenic | 30.0% | |
| GCAAAAACCAAAAGATAAAG+TGG | + | chr7.4:3847778-3847797 | None:intergenic | 30.0% | |
| TAGTTACACAATCTTCCATT+TGG | - | chr7.4:3847341-3847360 | MS.gene000890:CDS | 30.0% | |
| TTATATCATGAGTGATGTGT+AGG | + | chr7.4:3848954-3848973 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | - | chr7.4:3847569-3847588 | MS.gene000890:intron | 30.0% | |
| TTTGAAAAGACAGGATTTAG+TGG | - | chr7.4:3848537-3848556 | MS.gene000890:intron | 30.0% | |
| ! | AGATTGTCAGATGATTTTGA+AGG | + | chr7.4:3849059-3849078 | None:intergenic | 30.0% |
| ! | CGTCTAGTTAATTTGGAAAA+AGG | + | chr7.4:3848621-3848640 | None:intergenic | 30.0% |
| ! | TATTCACCCACTTTATCTTT+TGG | - | chr7.4:3847768-3847787 | MS.gene000890:intron | 30.0% |
| ! | TTTGGATTTCTGGGTAAATA+CGG | + | chr7.4:3847507-3847526 | None:intergenic | 30.0% |
| !! | AATGTGATTACTGATTTCCT+CGG | + | chr7.4:3849380-3849399 | None:intergenic | 30.0% |
| !!! | GTTTTTTGCTTGTGGTATAA+TGG | - | chr7.4:3847701-3847720 | MS.gene000890:intron | 30.0% |
| AATTATGCAACGCCAACTTA+AGG | + | chr7.4:3848781-3848800 | None:intergenic | 35.0% | |
| ACAAAGATACCAACCAATGA+TGG | + | chr7.4:3847439-3847458 | None:intergenic | 35.0% | |
| ATAACCACTTCCTCCAAATT+TGG | + | chr7.4:3849319-3849338 | None:intergenic | 35.0% | |
| ATAATATGCCTTCTTTGGAC+AGG | + | chr7.4:3848440-3848459 | None:intergenic | 35.0% | |
| ATGGAAGCTGAAATTGCTAA+AGG | - | chr7.4:3848357-3848376 | MS.gene000890:intron | 35.0% | |
| ATTATGCAACGCCAACTTAA+GGG | + | chr7.4:3848780-3848799 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.4:3847174-3847193 | MS.gene000890:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | - | chr7.4:3849303-3849322 | MS.gene000890:CDS | 35.0% | |
| CAAGAGACGTCTAGTTAATT+TGG | + | chr7.4:3848628-3848647 | None:intergenic | 35.0% | |
| GCTTCCAAATTTGAAAAGAC+AGG | - | chr7.4:3848528-3848547 | MS.gene000890:intron | 35.0% | |
| TACACAATCTTCCATTTGGT+GGG | - | chr7.4:3847345-3847364 | MS.gene000890:CDS | 35.0% | |
| TGGACATCTGTAACTAACTT+GGG | - | chr7.4:3848746-3848765 | MS.gene000890:intron | 35.0% | |
| TGGCGTTGCATAATTCTATT+TGG | - | chr7.4:3848786-3848805 | MS.gene000890:intron | 35.0% | |
| TTACACAATCTTCCATTTGG+TGG | - | chr7.4:3847344-3847363 | MS.gene000890:CDS | 35.0% | |
| ! | AATTTCAGCTTCCATTTTCC+CGG | + | chr7.4:3848352-3848371 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.4:3847471-3847490 | None:intergenic | 35.0% |
| ! | CAATTTGAAAGCATGTCTGA+CGG | + | chr7.4:3849007-3849026 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.4:3847470-3847489 | None:intergenic | 35.0% |
| ! | TAAGTAAGACTCTGAGAAGT+TGG | - | chr7.4:3848249-3848268 | MS.gene000890:intron | 35.0% |
| ! | TACCATTTTCTTCGGTTGTT+GGG | + | chr7.4:3848203-3848222 | None:intergenic | 35.0% |
| ! | TCAGCTAGTACCATTTTCTT+CGG | + | chr7.4:3848211-3848230 | None:intergenic | 35.0% |
| ! | TTTTGCTTGTGGTATAATGG+AGG | - | chr7.4:3847704-3847723 | MS.gene000890:intron | 35.0% |
| !! | AGGTTTCACTTTTGGATTTC+TGG | + | chr7.4:3847517-3847536 | None:intergenic | 35.0% |
| !! | ATTCTCGTATTGACTAACTG+TGG | - | chr7.4:3848719-3848738 | MS.gene000890:intron | 35.0% |
| !! | GGTTTCACTTTTGGATTTCT+GGG | + | chr7.4:3847516-3847535 | None:intergenic | 35.0% |
| !! | TGGTACTTTAATTTGTGCTC+CGG | + | chr7.4:3849206-3849225 | None:intergenic | 35.0% |
| AACCCAACAACCGAAGAAAA+TGG | - | chr7.4:3848198-3848217 | MS.gene000890:intron | 40.0% | |
| ACCAAACAATACATCGAGAG+CGG | - | chr7.4:3849274-3849293 | MS.gene000890:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.4:3847128-3847147 | MS.gene000890:CDS | 40.0% | |
| AGGATTACGACTTGTAAGCA+TGG | + | chr7.4:3848406-3848425 | None:intergenic | 40.0% | |
| AGTGGTTATACAGAAAGGTG+TGG | - | chr7.4:3849330-3849349 | MS.gene000890:CDS | 40.0% | |
| ATGCTTACAAGTCGTAATCC+TGG | - | chr7.4:3848405-3848424 | MS.gene000890:intron | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | - | chr7.4:3847522-3847541 | MS.gene000890:intron | 40.0% | |
| CTTCCTTGTAGCTCATGATT+GGG | - | chr7.4:3847410-3847429 | MS.gene000890:intron | 40.0% | |
| GAAAAGACAGGATTTAGTGG+TGG | - | chr7.4:3848540-3848559 | MS.gene000890:intron | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.4:3849306-3849325 | MS.gene000890:CDS | 40.0% | |
| GAAGTTCATCATAGGTGATC+TGG | - | chr7.4:3849228-3849247 | MS.gene000890:CDS | 40.0% | |
| GAGGAAGTGGTTATACAGAA+AGG | - | chr7.4:3849325-3849344 | MS.gene000890:CDS | 40.0% | |
| GTACCAGTGAAGTTCATCAT+AGG | - | chr7.4:3849220-3849239 | MS.gene000890:CDS | 40.0% | |
| GTGGACATCTGTAACTAACT+TGG | - | chr7.4:3848745-3848764 | MS.gene000890:intron | 40.0% | |
| GTGTAACTACTAATGGAAGC+TGG | + | chr7.4:3847330-3847349 | None:intergenic | 40.0% | |
| TAACAGAAATTGGGAGCTCA+CGG | - | chr7.4:3849171-3849190 | MS.gene000890:CDS | 40.0% | |
| TAGTCCAGAACTGTTGATCA+AGG | - | chr7.4:3848380-3848399 | MS.gene000890:intron | 40.0% | |
| TCACCTATGATGAACTTCAC+TGG | + | chr7.4:3849226-3849245 | None:intergenic | 40.0% | |
| TCTTCCTTGTAGCTCATGAT+TGG | - | chr7.4:3847409-3847428 | MS.gene000890:intron | 40.0% | |
| TGCTTACAAGTCGTAATCCT+GGG | - | chr7.4:3848406-3848425 | MS.gene000890:intron | 40.0% | |
| TTCCTTGTAGCTCATGATTG+GGG | - | chr7.4:3847411-3847430 | MS.gene000890:intron | 40.0% | |
| TTCGGTTGTTGGGTTTCAAT+TGG | + | chr7.4:3848193-3848212 | None:intergenic | 40.0% | |
| TTGTAGGTATCAATGGTGGT+AGG | + | chr7.4:3848983-3849002 | None:intergenic | 40.0% | |
| ! | ATTTCAGCTTCCATTTTCCC+GGG | + | chr7.4:3848351-3848370 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | + | chr7.4:3847525-3847544 | None:intergenic | 40.0% |
| ! | GTACCATTTTCTTCGGTTGT+TGG | + | chr7.4:3848204-3848223 | None:intergenic | 40.0% |
| ! | TATTGACTAACTGTGGTGAG+TGG | - | chr7.4:3848726-3848745 | MS.gene000890:intron | 40.0% |
| !! | TCACATGGATTGGAATTGGA+TGG | + | chr7.4:3848322-3848341 | None:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | - | chr7.4:3847198-3847217 | MS.gene000890:CDS | 40.0% |
| AAACAATACATCGAGAGCGG+TGG | - | chr7.4:3849277-3849296 | MS.gene000890:CDS | 45.0% | |
| ACCGCTCTCGATGTATTGTT+TGG | + | chr7.4:3849278-3849297 | None:intergenic | 45.0% | |
| ACTAATGGAAGCTGGAGCAT+CGG | + | chr7.4:3847322-3847341 | None:intergenic | 45.0% | |
| ATGCCTTCTTTGGACAGGAT+TGG | + | chr7.4:3848435-3848454 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.4:3847138-3847157 | MS.gene000890:CDS | 45.0% | |
| CATATTCTCCATGACCGAGA+GGG | + | chr7.4:3848697-3848716 | None:intergenic | 45.0% | |
| CCAATTCCAATCCATGTGAC+AGG | - | chr7.4:3848323-3848342 | MS.gene000890:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | + | chr7.4:3847201-3847220 | None:intergenic | 45.0% | |
| CGGAACACTGAGACAAACAT+AGG | + | chr7.4:3847487-3847506 | None:intergenic | 45.0% | |
| CTTCTTGTGAGAGCCAAGAA+GGG | + | chr7.4:3848494-3848513 | None:intergenic | 45.0% | |
| GGCATTGTACTTGAAACGCT+GGG | + | chr7.4:3848468-3848487 | None:intergenic | 45.0% | |
| GGGTTGTTTGACCCTTAAGT+TGG | - | chr7.4:3848766-3848785 | MS.gene000890:intron | 45.0% | |
| TCATATTCTCCATGACCGAG+AGG | + | chr7.4:3848698-3848717 | None:intergenic | 45.0% | |
| TCTTCTTGTGAGAGCCAAGA+AGG | + | chr7.4:3848495-3848514 | None:intergenic | 45.0% | |
| TGACGGCTTGTAGGTATCAA+TGG | + | chr7.4:3848990-3849009 | None:intergenic | 45.0% | |
| TGTGCCAAATTTGGAGGAAG+TGG | - | chr7.4:3849312-3849331 | MS.gene000890:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.4:3847223-3847242 | MS.gene000890:CDS | 45.0% | |
| ! | ATGGCCTTGATCAACAGTTC+TGG | + | chr7.4:3848387-3848406 | None:intergenic | 45.0% |
| !! | CCTGTCACATGGATTGGAAT+TGG | + | chr7.4:3848326-3848345 | None:intergenic | 45.0% |
| !!! | ATTAATTATTTTTAAAATCA+AGG | + | chr7.4:3848861-3848880 | None:intergenic | 5.0% |
| !!! | TTGATTTTAAAAATAATTAA+TGG | - | chr7.4:3848860-3848879 | MS.gene000890:intron | 5.0% |
| AAGCATGTCTGACGGCTTGT+AGG | + | chr7.4:3848999-3849018 | None:intergenic | 50.0% | |
| AATCCATGTGACAGGAACCC+GGG | - | chr7.4:3848331-3848350 | MS.gene000890:intron | 50.0% | |
| ACAGCACGCATTCCATCAAC+AGG | + | chr7.4:3847537-3847556 | None:intergenic | 50.0% | |
| AGAGGGTTGGAACCTTGGAT+TGG | + | chr7.4:3848680-3848699 | None:intergenic | 50.0% | |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.4:3847215-3847234 | None:intergenic | 50.0% | |
| AGCAACAGCACAGTAACCGA+GGG | + | chr7.4:3847274-3847293 | None:intergenic | 50.0% | |
| AGTGATGTGTAGGCTCACGA+AGG | + | chr7.4:3848944-3848963 | None:intergenic | 50.0% | |
| ATCCAAGGTTCCAACCCTCT+CGG | - | chr7.4:3848680-3848699 | MS.gene000890:intron | 50.0% | |
| CAACGATGTCACCCACCAAA+TGG | + | chr7.4:3847359-3847378 | None:intergenic | 50.0% | |
| CAATCCATGTGACAGGAACC+CGG | - | chr7.4:3848330-3848349 | MS.gene000890:intron | 50.0% | |
| CACCCCAATCATGAGCTACA+AGG | + | chr7.4:3847416-3847435 | None:intergenic | 50.0% | |
| CCACCAATCCTGTCCAAAGA+AGG | - | chr7.4:3848429-3848448 | MS.gene000890:intron | 50.0% | |
| CCTTCTTTGGACAGGATTGG+TGG | + | chr7.4:3848432-3848451 | None:intergenic | 50.0% | |
| CGGCTTGTAGGTATCAATGG+TGG | + | chr7.4:3848987-3849006 | None:intergenic | 50.0% | |
| GATGGAATGCGTGCTGTGTA+TGG | - | chr7.4:3847540-3847559 | MS.gene000890:intron | 50.0% | |
| TGATTTCCTCGGCAGCTTCT+TGG | + | chr7.4:3849369-3849388 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.4:3847214-3847233 | MS.gene000890:CDS | 50.0% | |
| TTGTGAGAGCCAAGAAGGGA+GGG | + | chr7.4:3848490-3848509 | None:intergenic | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.4:3847427-3847446 | MS.gene000890:intron | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.4:3847423-3847442 | MS.gene000890:intron | 50.0% |
| ! | GGGCATTGTACTTGAAACGC+TGG | + | chr7.4:3848469-3848488 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | - | chr7.4:3847375-3847394 | MS.gene000890:intron | 50.0% |
| AGCCAAGAGCAGCAATCTGG+TGG | + | chr7.4:3847251-3847270 | None:intergenic | 55.0% | |
| ATTGCTGCTCTTGGCTCCCT+CGG | - | chr7.4:3847255-3847274 | MS.gene000890:CDS | 55.0% | |
| CAACAACCAAGAAGCTGCCG+AGG | - | chr7.4:3849360-3849379 | MS.gene000890:CDS | 55.0% | |
| CGGGTTCCTGTCACATGGAT+TGG | + | chr7.4:3848332-3848351 | None:intergenic | 55.0% | |
| CTTGTGAGAGCCAAGAAGGG+AGG | + | chr7.4:3848491-3848510 | None:intergenic | 55.0% | |
| GAGCAACAGCACAGTAACCG+AGG | + | chr7.4:3847275-3847294 | None:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGTTA+CGG | - | chr7.4:3847291-3847310 | MS.gene000890:CDS | 55.0% | |
| GTACAATGCCCCTCCCTTCT+TGG | - | chr7.4:3848478-3848497 | MS.gene000890:intron | 55.0% | |
| GTGACAGGAACCCGGGAAAA+TGG | - | chr7.4:3848338-3848357 | MS.gene000890:intron | 55.0% | |
| TGTGAGAGCCAAGAAGGGAG+GGG | + | chr7.4:3848489-3848508 | None:intergenic | 55.0% | |
| TTCTCCATGACCGAGAGGGT+TGG | + | chr7.4:3848693-3848712 | None:intergenic | 55.0% | |
| TTTCCCGGGTTCCTGTCACA+TGG | + | chr7.4:3848337-3848356 | None:intergenic | 55.0% | |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.4:3847228-3847247 | None:intergenic | 55.0% |
| ATTGGGAGCTCACGGCAGCA+TGG | - | chr7.4:3849179-3849198 | MS.gene000890:CDS | 60.0% | |
| CGCCACCAGATTGCTGCTCT+TGG | - | chr7.4:3847246-3847265 | MS.gene000890:CDS | 60.0% | |
| GACCGAGAGGGTTGGAACCT+TGG | + | chr7.4:3848685-3848704 | None:intergenic | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | - | chr7.4:3847285-3847304 | MS.gene000890:CDS | 60.0% | |
| GGGAGCCAAGAGCAGCAATC+TGG | + | chr7.4:3847254-3847273 | None:intergenic | 60.0% | |
| GGTTCCAACCCTCTCGGTCA+TGG | - | chr7.4:3848686-3848705 | MS.gene000890:intron | 60.0% | |
| TCGCCGTAACCACGGAGATC+TGG | + | chr7.4:3847297-3847316 | None:intergenic | 60.0% | |
| ! | TTGGACAGGATTGGTGGCCC+AGG | + | chr7.4:3848426-3848445 | None:intergenic | 60.0% |
| !! | CATCGGTGTCGCCGTAACCA+CGG | + | chr7.4:3847305-3847324 | None:intergenic | 60.0% |
| GAGCTCACGGCAGCATGGAC+CGG | - | chr7.4:3849184-3849203 | MS.gene000890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3847123 | 3849423 | 3847123 | ID=MS.gene000890 |
| chr7.4 | mRNA | 3847123 | 3849423 | 3847123 | ID=MS.gene000890.t1;Parent=MS.gene000890 |
| chr7.4 | exon | 3848956 | 3849423 | 3848956 | ID=MS.gene000890.t1.exon1;Parent=MS.gene000890.t1 |
| chr7.4 | CDS | 3848956 | 3849423 | 3848956 | ID=cds.MS.gene000890.t1;Parent=MS.gene000890.t1 |
| chr7.4 | exon | 3847957 | 3848201 | 3847957 | ID=MS.gene000890.t1.exon2;Parent=MS.gene000890.t1 |
| chr7.4 | CDS | 3847957 | 3848201 | 3847957 | ID=cds.MS.gene000890.t1;Parent=MS.gene000890.t1 |
| chr7.4 | exon | 3847123 | 3847369 | 3847123 | ID=MS.gene000890.t1.exon3;Parent=MS.gene000890.t1 |
| chr7.4 | CDS | 3847123 | 3847369 | 3847123 | ID=cds.MS.gene000890.t1;Parent=MS.gene000890.t1 |
| Gene Sequence |
| Protein sequence |
