Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012063.t1 | XP_013446375.1 | 96.9 | 319 | 10 | 0 | 3 | 321 | 2 | 320 | 2.60E-184 | 654.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012063.t1 | I6YGS0 | 37.4 | 321 | 181 | 7 | 12 | 320 | 9 | 321 | 3.2e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012063.t1 | A0A072TSN0 | 96.9 | 319 | 10 | 0 | 3 | 321 | 2 | 320 | 1.9e-184 | 654.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012063.t1 | MTR_8g076680 | 96.562 | 320 | 11 | 0 | 2 | 321 | 1 | 320 | 0.0 | 642 |
| MS.gene012063.t1 | MTR_8g076680 | 97.046 | 237 | 7 | 0 | 3 | 239 | 2 | 238 | 1.44e-174 | 483 |
| MS.gene012063.t1 | MTR_7g112963 | 47.368 | 323 | 158 | 4 | 4 | 318 | 1 | 319 | 1.38e-108 | 319 |
| MS.gene012063.t1 | MTR_7g113030 | 47.988 | 323 | 156 | 4 | 4 | 318 | 1 | 319 | 2.96e-108 | 318 |
| MS.gene012063.t1 | MTR_4g120240 | 47.468 | 316 | 162 | 3 | 7 | 318 | 40 | 355 | 9.98e-108 | 318 |
| MS.gene012063.t1 | MTR_7g113050 | 48.276 | 319 | 161 | 3 | 4 | 318 | 1 | 319 | 1.36e-107 | 317 |
| MS.gene012063.t1 | MTR_7g112960 | 46.440 | 323 | 161 | 5 | 4 | 318 | 1 | 319 | 1.95e-107 | 316 |
| MS.gene012063.t1 | MTR_7g112615 | 47.649 | 319 | 163 | 3 | 4 | 318 | 1 | 319 | 1.65e-106 | 313 |
| MS.gene012063.t1 | MTR_7g112970 | 47.188 | 320 | 160 | 5 | 4 | 318 | 1 | 316 | 2.84e-106 | 313 |
| MS.gene012063.t1 | MTR_7g113020 | 46.708 | 319 | 166 | 3 | 4 | 318 | 1 | 319 | 6.04e-106 | 312 |
| MS.gene012063.t1 | MTR_7g108825 | 46.688 | 317 | 167 | 2 | 4 | 318 | 1 | 317 | 1.87e-105 | 311 |
| MS.gene012063.t1 | MTR_7g112620 | 47.335 | 319 | 164 | 3 | 4 | 318 | 1 | 319 | 5.70e-105 | 310 |
| MS.gene012063.t1 | MTR_4g005160 | 44.410 | 322 | 172 | 5 | 4 | 318 | 1 | 322 | 2.19e-95 | 285 |
| MS.gene012063.t1 | MTR_7g113010 | 45.614 | 285 | 145 | 3 | 4 | 282 | 1 | 281 | 3.55e-89 | 278 |
| MS.gene012063.t1 | MTR_7g113050 | 49.580 | 238 | 118 | 2 | 4 | 239 | 1 | 238 | 5.19e-81 | 246 |
| MS.gene012063.t1 | MTR_7g112615 | 48.739 | 238 | 120 | 2 | 4 | 239 | 1 | 238 | 7.95e-80 | 243 |
| MS.gene012063.t1 | MTR_7g108825 | 48.305 | 236 | 122 | 0 | 4 | 239 | 1 | 236 | 2.31e-79 | 241 |
| MS.gene012063.t1 | MTR_4g089060 | 38.050 | 318 | 184 | 6 | 4 | 317 | 1 | 309 | 2.52e-73 | 229 |
| MS.gene012063.t1 | MTR_4g089040 | 37.736 | 318 | 185 | 6 | 4 | 317 | 1 | 309 | 4.78e-71 | 223 |
| MS.gene012063.t1 | MTR_4g089060 | 35.072 | 345 | 184 | 7 | 4 | 317 | 1 | 336 | 3.29e-68 | 216 |
| MS.gene012063.t1 | MTR_2g090240 | 35.202 | 321 | 196 | 6 | 4 | 320 | 1 | 313 | 1.19e-66 | 212 |
| MS.gene012063.t1 | MTR_2g090245 | 34.268 | 321 | 199 | 6 | 4 | 320 | 1 | 313 | 5.14e-65 | 207 |
| MS.gene012063.t1 | MTR_1g083480 | 53.797 | 158 | 70 | 1 | 4 | 158 | 1 | 158 | 3.70e-59 | 188 |
| MS.gene012063.t1 | MTR_7g112615 | 52.201 | 159 | 75 | 1 | 4 | 161 | 1 | 159 | 5.64e-59 | 187 |
| MS.gene012063.t1 | MTR_4g089060 | 39.827 | 231 | 132 | 3 | 4 | 232 | 1 | 226 | 2.09e-58 | 188 |
| MS.gene012063.t1 | MTR_3g024250 | 51.429 | 105 | 51 | 0 | 50 | 154 | 3 | 107 | 9.49e-32 | 115 |
| MS.gene012063.t1 | MTR_7g112910 | 30.769 | 247 | 111 | 8 | 77 | 318 | 4 | 195 | 7.21e-25 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012063.t1 | AT3G51000 | 63.009 | 319 | 113 | 4 | 5 | 319 | 3 | 320 | 4.37e-152 | 429 |
| MS.gene012063.t1 | AT4G02340 | 47.812 | 320 | 158 | 5 | 4 | 318 | 1 | 316 | 4.58e-107 | 315 |
| MS.gene012063.t1 | AT3G05600 | 46.341 | 328 | 159 | 6 | 4 | 318 | 1 | 324 | 1.92e-100 | 299 |
| MS.gene012063.t1 | AT2G26740 | 47.664 | 321 | 159 | 5 | 7 | 318 | 1 | 321 | 3.78e-91 | 275 |
| MS.gene012063.t1 | AT4G15960 | 41.745 | 321 | 178 | 4 | 7 | 318 | 54 | 374 | 3.95e-88 | 269 |
| MS.gene012063.t1 | AT2G26750 | 46.372 | 317 | 162 | 5 | 7 | 315 | 1 | 317 | 2.09e-87 | 265 |
| MS.gene012063.t1 | AT4G15955 | 41.325 | 317 | 148 | 8 | 8 | 311 | 6 | 297 | 8.54e-81 | 248 |
| MS.gene012063.t1 | AT3G05600 | 46.559 | 247 | 117 | 5 | 4 | 239 | 1 | 243 | 3.94e-74 | 228 |
| MS.gene012063.t1 | AT4G15955 | 50.289 | 173 | 75 | 3 | 8 | 169 | 6 | 178 | 1.76e-56 | 181 |
| MS.gene012063.t1 | AT4G15955 | 50.303 | 165 | 71 | 3 | 8 | 161 | 6 | 170 | 2.43e-53 | 173 |
Find 82 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAGCATGATAACCATTT+TGG | 0.142448 | 8.2:+28671308 | None:intergenic |
| ATTGGTCTTCTTGATCATTT+TGG | 0.150021 | 8.2:-28671202 | MS.gene012063:CDS |
| CGCCAAGAATACCATATTTC+TGG | 0.182663 | 8.2:+28671352 | None:intergenic |
| AGCTCATGTTTGCCAATTTC+AGG | 0.222501 | 8.2:-28670074 | MS.gene012063:intron |
| CATATTGTTGGTGACCTTAT+TGG | 0.232766 | 8.2:-28671220 | MS.gene012063:CDS |
| CTCAACTACTTGGCCCAAAA+TGG | 0.297865 | 8.2:-28671322 | MS.gene012063:CDS |
| TTCATGGTTTCCCAGAAATA+TGG | 0.300646 | 8.2:-28671363 | MS.gene012063:CDS |
| CCTAATCTAGAGATAGTTTA+CGG | 0.303872 | 8.2:+28669419 | None:intergenic |
| AAGGGTAATCTACCTGAAAT+TGG | 0.307281 | 8.2:+28670062 | None:intergenic |
| TCCCAGAAATATGGTATTCT+TGG | 0.309032 | 8.2:-28671354 | MS.gene012063:CDS |
| CCACTAGTTCTACTGCTTCA+TGG | 0.344231 | 8.2:-28671379 | MS.gene012063:CDS |
| GATGGCACCTAAGTCTATTT+AGG | 0.355832 | 8.2:-28670198 | MS.gene012063:CDS |
| CCGTAAACTATCTCTAGATT+AGG | 0.356075 | 8.2:-28669419 | None:intergenic |
| GTGTATGAATTGGGGTTGAT+AGG | 0.358412 | 8.2:+28671250 | None:intergenic |
| ACAAACCCCTTCACTCTATC+AGG | 0.370013 | 8.2:+28670175 | None:intergenic |
| TACACTCTTCAACATATTGT+TGG | 0.372583 | 8.2:-28671232 | MS.gene012063:CDS |
| CGTAAACTATCTCTAGATTA+GGG | 0.379541 | 8.2:-28669418 | None:intergenic |
| TCTCCGGCAATAAACTTAGT+TGG | 0.388206 | 8.2:+28669601 | None:intergenic |
| TGATTTCTTGCCAACTCCTT+CGG | 0.394280 | 8.2:-28669849 | MS.gene012063:CDS |
| GTTCCAACTAAGTTTATTGC+CGG | 0.395155 | 8.2:-28669604 | MS.gene012063:CDS |
| GCAGACAAATTCCAAGAGTC+TGG | 0.396715 | 8.2:-28669785 | MS.gene012063:CDS |
| TGTTGAAGAGTGTATGAATT+GGG | 0.407460 | 8.2:+28671241 | None:intergenic |
| AGAGAAAGCTCAACAAGTTT+CGG | 0.408255 | 8.2:-28669461 | MS.gene012063:CDS |
| GCACCTGATCTAAGAGGATA+TGG | 0.428528 | 8.2:-28671286 | MS.gene012063:CDS |
| TACATGTATATTTATTCCGT+TGG | 0.437349 | 8.2:+28671420 | None:intergenic |
| AAAACCAACATCTTTGTCTC+CGG | 0.451884 | 8.2:+28669585 | None:intergenic |
| GAAACTATAAGAAAAGTATA+CGG | 0.452414 | 8.2:-28670103 | MS.gene012063:CDS |
| GTTGGAGATCTTGGAAAGTA+AGG | 0.455828 | 8.2:+28670139 | None:intergenic |
| TAGAGATAGTTTACGGATGA+AGG | 0.460572 | 8.2:+28669426 | None:intergenic |
| CTTGAAGTGGTTATACTAGA+TGG | 0.462250 | 8.2:-28669502 | MS.gene012063:CDS |
| CACCGGTGAAACCAGACTCT+TGG | 0.472500 | 8.2:+28669774 | None:intergenic |
| AGTATAACCACTTCAAGGTT+AGG | 0.474123 | 8.2:+28669508 | None:intergenic |
| TTCCAAGAGTCTGGTTTCAC+CGG | 0.475025 | 8.2:-28669776 | MS.gene012063:CDS |
| AATGATCAAGAAGACCAATA+AGG | 0.475165 | 8.2:+28671206 | None:intergenic |
| GCCAAGAATACCATATTTCT+GGG | 0.482112 | 8.2:+28671353 | None:intergenic |
| GGGCCAAGTAGTTGAGTTGG+TGG | 0.492922 | 8.2:+28671329 | None:intergenic |
| TCACCATATCCTCTTAGATC+AGG | 0.494603 | 8.2:+28671283 | None:intergenic |
| CTTTCTCTTGATGTATATAG+TGG | 0.499966 | 8.2:+28669476 | None:intergenic |
| CATCTAGTATAACCACTTCA+AGG | 0.501344 | 8.2:+28669503 | None:intergenic |
| TTTGGGCCAAGTAGTTGAGT+TGG | 0.505675 | 8.2:+28671326 | None:intergenic |
| CATGTAGCAGAACAAGGAAC+AGG | 0.506519 | 8.2:-28671403 | MS.gene012063:CDS |
| ATTGGGGTTGATAGGAGAAT+CGG | 0.507484 | 8.2:+28671258 | None:intergenic |
| TGAATGAAGGCATATGTAGT+AGG | 0.512881 | 8.2:-28670244 | MS.gene012063:intron |
| TATCAGGCCTAAATAGACTT+AGG | 0.515370 | 8.2:+28670191 | None:intergenic |
| ATAGTTTACGGATGAAGGAA+AGG | 0.519190 | 8.2:+28669431 | None:intergenic |
| ATGTTGAAGAGTGTATGAAT+TGG | 0.524008 | 8.2:+28671240 | None:intergenic |
| CATATGTAGTAGGATCTGAC+TGG | 0.526683 | 8.2:-28670234 | MS.gene012063:CDS |
| GTTATCTTTGATCCTTGCCA+TGG | 0.532855 | 8.2:+28669628 | None:intergenic |
| CAAGGTTAGGAACAAGACTC+TGG | 0.533494 | 8.2:+28669521 | None:intergenic |
| GCGCCACCAACTCAACTACT+TGG | 0.535864 | 8.2:-28671332 | MS.gene012063:CDS |
| TATAACAGCTCCTCCTGGCA+TGG | 0.539454 | 8.2:-28669879 | MS.gene012063:CDS |
| TCTTGTTCCTAACCTTGAAG+TGG | 0.541399 | 8.2:-28669515 | MS.gene012063:CDS |
| TTGCGTGGTTGGCAGGAACC+AGG | 0.547693 | 8.2:-28669980 | MS.gene012063:intron |
| AAATCAACAATCTCCATGCC+AGG | 0.548033 | 8.2:+28669866 | None:intergenic |
| TCTGACTGGGGAGCAAACAT+TGG | 0.557088 | 8.2:-28670220 | MS.gene012063:CDS |
| TTTAGGCCTGATAGAGTGAA+GGG | 0.566974 | 8.2:-28670181 | MS.gene012063:CDS |
| ATAAGAAAAGTATACGGAGA+TGG | 0.570679 | 8.2:-28670097 | MS.gene012063:CDS |
| ATTGCCGGAGACAAAGATGT+TGG | 0.571908 | 8.2:-28669589 | MS.gene012063:CDS |
| ACTGGGGAGCAAACATTGGA+TGG | 0.572887 | 8.2:-28670216 | MS.gene012063:CDS |
| GCTGTTGCACCTGATCTAAG+AGG | 0.588705 | 8.2:-28671292 | MS.gene012063:CDS |
| ATATGTAGTAGGATCTGACT+GGG | 0.595018 | 8.2:-28670233 | MS.gene012063:CDS |
| AAAGCTCTCTCTGCACGACC+TGG | 0.595328 | 8.2:+28669962 | None:intergenic |
| ATCCACGACGGCAAAACCGA+AGG | 0.595962 | 8.2:+28669833 | None:intergenic |
| GACGGCAAAACCGAAGGAGT+TGG | 0.599928 | 8.2:+28669839 | None:intergenic |
| ACTCAATGGTTACAGAAGCT+GGG | 0.603841 | 8.2:-28669662 | MS.gene012063:intron |
| CACCAAAGAATCAAAACCAA+CGG | 0.604850 | 8.2:-28671436 | MS.gene012063:CDS |
| ATTTAGGCCTGATAGAGTGA+AGG | 0.608580 | 8.2:-28670182 | MS.gene012063:CDS |
| GATAACCGAGGAAGAACTCA+TGG | 0.608940 | 8.2:-28669813 | MS.gene012063:CDS |
| CCATGAAGCAGTAGAACTAG+TGG | 0.617178 | 8.2:+28671379 | None:intergenic |
| CACTTCAGTCATGAAGAACA+TGG | 0.621193 | 8.2:+28671462 | None:intergenic |
| GTTGAAGAGTGTATGAATTG+GGG | 0.627329 | 8.2:+28671242 | None:intergenic |
| AATATACATGTAGCAGAACA+AGG | 0.633512 | 8.2:-28671409 | MS.gene012063:CDS |
| GAAAGCTCAACAAGTTTCGG+AGG | 0.645089 | 8.2:-28669458 | MS.gene012063:CDS |
| TTAGGCCTGATAGAGTGAAG+GGG | 0.646633 | 8.2:-28670180 | MS.gene012063:CDS |
| GAACTTCTAGCACCATGGCA+AGG | 0.648382 | 8.2:-28669640 | MS.gene012063:CDS |
| GCGATAGTAATTGAATGCAC+CGG | 0.666695 | 8.2:+28669757 | None:intergenic |
| TTTGCCGTCGTGGATAACCG+AGG | 0.689324 | 8.2:-28669825 | MS.gene012063:CDS |
| GCTGGGAACTTCTAGCACCA+TGG | 0.691193 | 8.2:-28669645 | MS.gene012063:CDS |
| TCTTCCTCGGTTATCCACGA+CGG | 0.703931 | 8.2:+28669821 | None:intergenic |
| ATTCAATTACTATCGCGCAA+TGG | 0.705978 | 8.2:-28669750 | MS.gene012063:CDS |
| TCAACAATCTCCATGCCAGG+AGG | 0.721559 | 8.2:+28669869 | None:intergenic |
| TATGTAGTAGGATCTGACTG+GGG | 0.804727 | 8.2:-28670232 | MS.gene012063:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAACAAAAAAACAT+AGG | + | chr8.2:28671175-28671194 | None:intergenic | 15.0% |
| !! | TATTTCAATAAATATCTACA+CGG | + | chr8.2:28670547-28670566 | None:intergenic | 15.0% |
| !! | AAATTAGGAAATTAGGAAAA+AGG | + | chr8.2:28670599-28670618 | None:intergenic | 20.0% |
| !! | ACAAAAAAACATAGGAAAAA+TGG | + | chr8.2:28671167-28671186 | None:intergenic | 20.0% |
| !! | AGAGAATAAATTAGGAAATT+AGG | + | chr8.2:28670606-28670625 | None:intergenic | 20.0% |
| !! | ATTAAACTAAAAAAACGTAG+AGG | + | chr8.2:28669743-28669762 | None:intergenic | 20.0% |
| !! | TACAATGGTAAATTGTAATT+TGG | + | chr8.2:28670241-28670260 | None:intergenic | 20.0% |
| !!! | AACTTTAGGTTTTTACAAAT+GGG | - | chr8.2:28670349-28670368 | MS.gene012063:intron | 20.0% |
| !!! | AAGTTTACATATATCGTTTT+AGG | - | chr8.2:28670488-28670507 | MS.gene012063:intron | 20.0% |
| !!! | GAAACTATAAGAAAAGTATA+CGG | - | chr8.2:28670777-28670796 | MS.gene012063:intron | 20.0% |
| !!! | TACTTATCTATTTTCTTTAG+AGG | + | chr8.2:28670125-28670144 | None:intergenic | 20.0% |
| !!! | TTATATCAAGTTGAAAATTG+TGG | + | chr8.2:28669927-28669946 | None:intergenic | 20.0% |
| ! | AAACGATATATGTAAACTTG+AGG | + | chr8.2:28670487-28670506 | None:intergenic | 25.0% |
| ! | AACTTTATCAAGCCATAAAA+GGG | + | chr8.2:28670839-28670858 | None:intergenic | 25.0% |
| ! | ATCTTTGAACGTGATTAATT+AGG | + | chr8.2:28669830-28669849 | None:intergenic | 25.0% |
| ! | ATTACAATTTACCATTGTAC+CGG | - | chr8.2:28670242-28670261 | MS.gene012063:intron | 25.0% |
| ! | GAAATATAATTGTACGCAAT+TGG | - | chr8.2:28670561-28670580 | MS.gene012063:intron | 25.0% |
| ! | TAACTTTATCAAGCCATAAA+AGG | + | chr8.2:28670840-28670859 | None:intergenic | 25.0% |
| ! | TACATGTATATTTATTCCGT+TGG | + | chr8.2:28669463-28669482 | None:intergenic | 25.0% |
| !! | TAATTTTCATTGAAATTGCG+TGG | - | chr8.2:28670885-28670904 | MS.gene012063:intron | 25.0% |
| !!! | AAAGATGTTGGTTTTCAAAA+TGG | - | chr8.2:28671303-28671322 | MS.gene012063:CDS | 25.0% |
| !!! | AAGATGTTGGTTTTCAAAAT+GGG | - | chr8.2:28671304-28671323 | MS.gene012063:CDS | 25.0% |
| !!! | ACTTTAGGTTTTTACAAATG+GGG | - | chr8.2:28670350-28670369 | MS.gene012063:intron | 25.0% |
| !!! | ATCGTTTTAGGTCTTAATTT+AGG | - | chr8.2:28670500-28670519 | MS.gene012063:intron | 25.0% |
| !!! | CAACTTTAGGTTTTTACAAA+TGG | - | chr8.2:28670348-28670367 | MS.gene012063:intron | 25.0% |
| !!! | TTATCTATTTTCTTTAGAGG+TGG | + | chr8.2:28670122-28670141 | None:intergenic | 25.0% |
| AAACGATTTACCATAGAGTT+CGG | - | chr8.2:28670162-28670181 | MS.gene012063:CDS | 30.0% | |
| AACCATTGAGTGTGAATAAA+TGG | + | chr8.2:28671209-28671228 | None:intergenic | 30.0% | |
| AATATACATGTAGCAGAACA+AGG | - | chr8.2:28669471-28669490 | MS.gene012063:CDS | 30.0% | |
| AATGATCAAGAAGACCAATA+AGG | + | chr8.2:28669677-28669696 | None:intergenic | 30.0% | |
| ACATATGCCTTCATTCAAAT+GGG | + | chr8.2:28670633-28670652 | None:intergenic | 30.0% | |
| ATAGGAAAAATGGTACTTAC+AGG | + | chr8.2:28671157-28671176 | None:intergenic | 30.0% | |
| ATCCATTTATTCACACTCAA+TGG | - | chr8.2:28671204-28671223 | MS.gene012063:CDS | 30.0% | |
| CCAAAATTTGCATGAGATTA+AGG | - | chr8.2:28669973-28669992 | MS.gene012063:intron | 30.0% | |
| CTTTCTCTTGATGTATATAG+TGG | + | chr8.2:28671407-28671426 | None:intergenic | 30.0% | |
| GAGTCATATTCAACAACTTT+AGG | - | chr8.2:28670335-28670354 | MS.gene012063:intron | 30.0% | |
| TACACTCTTCAACATATTGT+TGG | - | chr8.2:28669648-28669667 | MS.gene012063:CDS | 30.0% | |
| TACATATGCCTTCATTCAAA+TGG | + | chr8.2:28670634-28670653 | None:intergenic | 30.0% | |
| TATATGTAAACTTGAGGTCT+TGG | + | chr8.2:28670481-28670500 | None:intergenic | 30.0% | |
| TGGGATAGAGAGAATAAATT+AGG | + | chr8.2:28670614-28670633 | None:intergenic | 30.0% | |
| TTAGGAAAAAGGATAGTTTG+AGG | + | chr8.2:28670588-28670607 | None:intergenic | 30.0% | |
| TTGTGGTCAATTCAACTATA+AGG | - | chr8.2:28669897-28669916 | MS.gene012063:CDS | 30.0% | |
| ! | AACAGCATGATAACCATTTT+GGG | + | chr8.2:28669574-28669593 | None:intergenic | 30.0% |
| ! | ATAAGAAAAGTATACGGAGA+TGG | - | chr8.2:28670783-28670802 | MS.gene012063:intron | 30.0% |
| ! | ATGTTGAAGAGTGTATGAAT+TGG | + | chr8.2:28669643-28669662 | None:intergenic | 30.0% |
| ! | ATTTTGCCTACAACATGAAA+AGG | + | chr8.2:28670378-28670397 | None:intergenic | 30.0% |
| ! | CCTTAATCTCATGCAAATTT+TGG | + | chr8.2:28669976-28669995 | None:intergenic | 30.0% |
| ! | GGTAAATCGTTTGTGTTTTT+GGG | + | chr8.2:28670154-28670173 | None:intergenic | 30.0% |
| ! | TGGTAAATCGTTTGTGTTTT+TGG | + | chr8.2:28670155-28670174 | None:intergenic | 30.0% |
| ! | TGTTGAAGAGTGTATGAATT+GGG | + | chr8.2:28669642-28669661 | None:intergenic | 30.0% |
| !! | AGAAGTTTTTGCTGATTACA+TGG | - | chr8.2:28670970-28670989 | MS.gene012063:intron | 30.0% |
| !! | GTGTTATTGACTCAAACATA+TGG | + | chr8.2:28670459-28670478 | None:intergenic | 30.0% |
| !! | GTTTCAACAGTTTTATCTGT+TGG | + | chr8.2:28670762-28670781 | None:intergenic | 30.0% |
| !! | TGATCATTTTGGTGAACAAA+AGG | - | chr8.2:28669689-28669708 | MS.gene012063:intron | 30.0% |
| !!! | AGATGTTGGTTTTCAAAATG+GGG | - | chr8.2:28671305-28671324 | MS.gene012063:CDS | 30.0% |
| !!! | ATTGGTCTTCTTGATCATTT+TGG | - | chr8.2:28669678-28669697 | MS.gene012063:intron | 30.0% |
| AAAAACCATGAGTTCTTCCT+CGG | + | chr8.2:28671075-28671094 | None:intergenic | 35.0% | |
| AAAACCAACATCTTTGTCTC+CGG | + | chr8.2:28671298-28671317 | None:intergenic | 35.0% | |
| AAGGGTAATCTACCTGAAAT+TGG | + | chr8.2:28670821-28670840 | None:intergenic | 35.0% | |
| AGAGAAAGCTCAACAAGTTT+CGG | - | chr8.2:28671419-28671438 | MS.gene012063:CDS | 35.0% | |
| AGTATAACCACTTCAAGGTT+AGG | + | chr8.2:28671375-28671394 | None:intergenic | 35.0% | |
| ATAGTTTACGGATGAAGGAA+AGG | + | chr8.2:28671452-28671471 | None:intergenic | 35.0% | |
| ATATGTAGTAGGATCTGACT+GGG | - | chr8.2:28670647-28670666 | MS.gene012063:intron | 35.0% | |
| ATTCAATTACTATCGCGCAA+TGG | - | chr8.2:28671130-28671149 | MS.gene012063:intron | 35.0% | |
| ATTCACTCATAACTCACAAG+TGG | + | chr8.2:28670315-28670334 | None:intergenic | 35.0% | |
| CACCAAAGAATCAAAACCAA+CGG | - | chr8.2:28669444-28669463 | MS.gene012063:CDS | 35.0% | |
| CATCTAGTATAACCACTTCA+AGG | + | chr8.2:28671380-28671399 | None:intergenic | 35.0% | |
| CTTGAAGTGGTTATACTAGA+TGG | - | chr8.2:28671378-28671397 | MS.gene012063:CDS | 35.0% | |
| GCATCATGAAAATGTCATGT+TGG | + | chr8.2:28670407-28670426 | None:intergenic | 35.0% | |
| GCCAAGAATACCATATTTCT+GGG | + | chr8.2:28669530-28669549 | None:intergenic | 35.0% | |
| GTTCCAACTAAGTTTATTGC+CGG | - | chr8.2:28671276-28671295 | MS.gene012063:CDS | 35.0% | |
| TAGAGATAGTTTACGGATGA+AGG | + | chr8.2:28671457-28671476 | None:intergenic | 35.0% | |
| TATCAGGCCTAAATAGACTT+AGG | + | chr8.2:28670692-28670711 | None:intergenic | 35.0% | |
| TCAAGTCACAGTCAAAATTG+TGG | - | chr8.2:28669880-28669899 | MS.gene012063:CDS | 35.0% | |
| TCCCAGAAATATGGTATTCT+TGG | - | chr8.2:28669526-28669545 | MS.gene012063:CDS | 35.0% | |
| TCTCTATCCCATTTGAATGA+AGG | - | chr8.2:28670623-28670642 | MS.gene012063:intron | 35.0% | |
| TTCACTCATAACTCACAAGT+GGG | + | chr8.2:28670314-28670333 | None:intergenic | 35.0% | |
| TTCATGGTTTCCCAGAAATA+TGG | - | chr8.2:28669517-28669536 | MS.gene012063:CDS | 35.0% | |
| TTTCATTGAAATTGCGTGGT+TGG | - | chr8.2:28670889-28670908 | MS.gene012063:intron | 35.0% | |
| ! | CAACAGCATGATAACCATTT+TGG | + | chr8.2:28669575-28669594 | None:intergenic | 35.0% |
| ! | GGTACAAAAGATTTTGTGGA+AGG | - | chr8.2:28671327-28671346 | MS.gene012063:CDS | 35.0% |
| ! | GTTGAAGAGTGTATGAATTG+GGG | + | chr8.2:28669641-28669660 | None:intergenic | 35.0% |
| ! | GTTTTATCTGTTGGAGATCT+TGG | + | chr8.2:28670753-28670772 | None:intergenic | 35.0% |
| ! | TCAGGTAGATTACCCTTTTA+TGG | - | chr8.2:28670824-28670843 | MS.gene012063:intron | 35.0% |
| ! | TGAATGAAGGCATATGTAGT+AGG | - | chr8.2:28670636-28670655 | MS.gene012063:intron | 35.0% |
| !! | CATATTGTTGGTGACCTTAT+TGG | - | chr8.2:28669660-28669679 | MS.gene012063:intron | 35.0% |
| !!! | AATCGTTTGTGTTTTTGGGA+TGG | + | chr8.2:28670150-28670169 | None:intergenic | 35.0% |
| !!! | GATGTTGGTTTTCAAAATGG+GGG | - | chr8.2:28671306-28671325 | MS.gene012063:CDS | 35.0% |
| !!! | TTCCGTTGGTTTTGATTCTT+TGG | + | chr8.2:28669449-28669468 | None:intergenic | 35.0% |
| AAATCAACAATCTCCATGCC+AGG | + | chr8.2:28671017-28671036 | None:intergenic | 40.0% | |
| ACTCAATGGTTACAGAAGCT+GGG | - | chr8.2:28671218-28671237 | MS.gene012063:CDS | 40.0% | |
| AGCTCATGTTTGCCAATTTC+AGG | - | chr8.2:28670806-28670825 | MS.gene012063:intron | 40.0% | |
| ATTTAGGCCTGATAGAGTGA+AGG | - | chr8.2:28670698-28670717 | MS.gene012063:intron | 40.0% | |
| CAACAAACTTACCGGTACAA+TGG | + | chr8.2:28670256-28670275 | None:intergenic | 40.0% | |
| CATATGTAGTAGGATCTGAC+TGG | - | chr8.2:28670646-28670665 | MS.gene012063:intron | 40.0% | |
| CCGAATTTACTCCACATCTA+CGG | + | chr8.2:28670004-28670023 | None:intergenic | 40.0% | |
| CCGTAGATGTGGAGTAAATT+CGG | - | chr8.2:28670001-28670020 | MS.gene012063:intron | 40.0% | |
| CGCCAAGAATACCATATTTC+TGG | + | chr8.2:28669531-28669550 | None:intergenic | 40.0% | |
| GATGGCACCTAAGTCTATTT+AGG | - | chr8.2:28670682-28670701 | MS.gene012063:intron | 40.0% | |
| GCGATAGTAATTGAATGCAC+CGG | + | chr8.2:28671126-28671145 | None:intergenic | 40.0% | |
| GTTATCTTTGATCCTTGCCA+TGG | + | chr8.2:28671255-28671274 | None:intergenic | 40.0% | |
| GTTGGAGATCTTGGAAAGTA+AGG | + | chr8.2:28670744-28670763 | None:intergenic | 40.0% | |
| TATATCTGAGCGAGTCTCAA+GGG | - | chr8.2:28670069-28670088 | MS.gene012063:intron | 40.0% | |
| TATGTAGTAGGATCTGACTG+GGG | - | chr8.2:28670648-28670667 | MS.gene012063:intron | 40.0% | |
| TCACCATATCCTCTTAGATC+AGG | + | chr8.2:28669600-28669619 | None:intergenic | 40.0% | |
| TCTCCGGCAATAAACTTAGT+TGG | + | chr8.2:28671282-28671301 | None:intergenic | 40.0% | |
| TCTTGTTCCTAACCTTGAAG+TGG | - | chr8.2:28671365-28671384 | MS.gene012063:CDS | 40.0% | |
| TGATTTCTTGCCAACTCCTT+CGG | - | chr8.2:28671031-28671050 | MS.gene012063:intron | 40.0% | |
| TTAAGGATATGCCGTAGATG+TGG | - | chr8.2:28669990-28670009 | MS.gene012063:intron | 40.0% | |
| TTATATCTGAGCGAGTCTCA+AGG | - | chr8.2:28670068-28670087 | MS.gene012063:intron | 40.0% | |
| TTTAGGCCTGATAGAGTGAA+GGG | - | chr8.2:28670699-28670718 | MS.gene012063:intron | 40.0% | |
| ! | CATTTTATAACAGCTCCTCC+TGG | - | chr8.2:28670996-28671015 | MS.gene012063:intron | 40.0% |
| ! | GTGTATGAATTGGGGTTGAT+AGG | + | chr8.2:28669633-28669652 | None:intergenic | 40.0% |
| ! | TGAAAGCGCAACAAACTTAC+CGG | + | chr8.2:28670264-28670283 | None:intergenic | 40.0% |
| !! | ATTGGGGTTGATAGGAGAAT+CGG | + | chr8.2:28669625-28669644 | None:intergenic | 40.0% |
| !! | TGGGGGTACAAAAGATTTTG+TGG | - | chr8.2:28671323-28671342 | MS.gene012063:CDS | 40.0% |
| ACAAACCCCTTCACTCTATC+AGG | + | chr8.2:28670708-28670727 | None:intergenic | 45.0% | |
| ACGTAGAGGCTCAAGAGAAT+TGG | + | chr8.2:28669729-28669748 | None:intergenic | 45.0% | |
| ATTGAAATTGCGTGGTTGGC+AGG | - | chr8.2:28670893-28670912 | MS.gene012063:intron | 45.0% | |
| ATTGCCGGAGACAAAGATGT+TGG | - | chr8.2:28671291-28671310 | MS.gene012063:CDS | 45.0% | |
| CAAGGTTAGGAACAAGACTC+TGG | + | chr8.2:28671362-28671381 | None:intergenic | 45.0% | |
| CACTCAATGGTTACAGAAGC+TGG | - | chr8.2:28671217-28671236 | MS.gene012063:CDS | 45.0% | |
| CATGTAGCAGAACAAGGAAC+AGG | - | chr8.2:28669477-28669496 | MS.gene012063:CDS | 45.0% | |
| CCATAGAGTTCGGTCAATCA+TGG | - | chr8.2:28670172-28670191 | MS.gene012063:CDS | 45.0% | |
| CCATGAAGCAGTAGAACTAG+TGG | + | chr8.2:28669504-28669523 | None:intergenic | 45.0% | |
| CCATGATTGACCGAACTCTA+TGG | + | chr8.2:28670175-28670194 | None:intergenic | 45.0% | |
| CTCAACTACTTGGCCCAAAA+TGG | - | chr8.2:28669558-28669577 | MS.gene012063:CDS | 45.0% | |
| CTCATAACTCACAAGTGGGT+AGG | + | chr8.2:28670310-28670329 | None:intergenic | 45.0% | |
| GAAAGCTCAACAAGTTTCGG+AGG | - | chr8.2:28671422-28671441 | MS.gene012063:CDS | 45.0% | |
| GATAACCGAGGAAGAACTCA+TGG | - | chr8.2:28671067-28671086 | MS.gene012063:intron | 45.0% | |
| GCACCTGATCTAAGAGGATA+TGG | - | chr8.2:28669594-28669613 | MS.gene012063:CDS | 45.0% | |
| GCAGACAAATTCCAAGAGTC+TGG | - | chr8.2:28671095-28671114 | MS.gene012063:intron | 45.0% | |
| TTAGGCCTGATAGAGTGAAG+GGG | - | chr8.2:28670700-28670719 | MS.gene012063:intron | 45.0% | |
| TTTGGGCCAAGTAGTTGAGT+TGG | + | chr8.2:28669557-28669576 | None:intergenic | 45.0% | |
| ! | GGGGAACCTTTTCATGTTGT+AGG | - | chr8.2:28670369-28670388 | MS.gene012063:intron | 45.0% |
| ! | TTCCAAGAGTCTGGTTTCAC+CGG | - | chr8.2:28671104-28671123 | MS.gene012063:intron | 45.0% |
| !! | CCACTAGTTCTACTGCTTCA+TGG | - | chr8.2:28669501-28669520 | MS.gene012063:CDS | 45.0% |
| ACTGGGGAGCAAACATTGGA+TGG | - | chr8.2:28670664-28670683 | MS.gene012063:intron | 50.0% | |
| GAACTTCTAGCACCATGGCA+AGG | - | chr8.2:28671240-28671259 | MS.gene012063:CDS | 50.0% | |
| GCTGTTGCACCTGATCTAAG+AGG | - | chr8.2:28669588-28669607 | MS.gene012063:CDS | 50.0% | |
| TATAACAGCTCCTCCTGGCA+TGG | - | chr8.2:28671001-28671020 | MS.gene012063:intron | 50.0% | |
| TCAACAATCTCCATGCCAGG+AGG | + | chr8.2:28671014-28671033 | None:intergenic | 50.0% | |
| TCTGACTGGGGAGCAAACAT+TGG | - | chr8.2:28670660-28670679 | MS.gene012063:intron | 50.0% | |
| TCTTCCTCGGTTATCCACGA+CGG | + | chr8.2:28671062-28671081 | None:intergenic | 50.0% | |
| AAAGCTCTCTCTGCACGACC+TGG | + | chr8.2:28670921-28670940 | None:intergenic | 55.0% | |
| ATCCACGACGGCAAAACCGA+AGG | + | chr8.2:28671050-28671069 | None:intergenic | 55.0% | |
| CACCGGTGAAACCAGACTCT+TGG | + | chr8.2:28671109-28671128 | None:intergenic | 55.0% | |
| GACGGCAAAACCGAAGGAGT+TGG | + | chr8.2:28671044-28671063 | None:intergenic | 55.0% | |
| GCGCCACCAACTCAACTACT+TGG | - | chr8.2:28669548-28669567 | MS.gene012063:CDS | 55.0% | |
| GCTGGGAACTTCTAGCACCA+TGG | - | chr8.2:28671235-28671254 | MS.gene012063:CDS | 55.0% | |
| TTTGCCGTCGTGGATAACCG+AGG | - | chr8.2:28671055-28671074 | MS.gene012063:intron | 55.0% | |
| !! | GGGCCAAGTAGTTGAGTTGG+TGG | + | chr8.2:28669554-28669573 | None:intergenic | 55.0% |
| AGGCGCTCGAGCATATCGAG+TGG | + | chr8.2:28670290-28670309 | None:intergenic | 60.0% | |
| TTGCGTGGTTGGCAGGAACC+AGG | - | chr8.2:28670900-28670919 | MS.gene012063:intron | 60.0% | |
| ! | CTCCTTCGGTTTTGCCGTCG+TGG | - | chr8.2:28671045-28671064 | MS.gene012063:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 28669420 | 28671482 | 28669420 | ID=MS.gene012063 |
| chr8.2 | mRNA | 28669420 | 28671482 | 28669420 | ID=MS.gene012063.t1;Parent=MS.gene012063 |
| chr8.2 | exon | 28671192 | 28671482 | 28671192 | ID=MS.gene012063.t1.exon1;Parent=MS.gene012063.t1 |
| chr8.2 | CDS | 28671192 | 28671482 | 28671192 | ID=cds.MS.gene012063.t1;Parent=MS.gene012063.t1 |
| chr8.2 | exon | 28670075 | 28670257 | 28670075 | ID=MS.gene012063.t1.exon2;Parent=MS.gene012063.t1 |
| chr8.2 | CDS | 28670075 | 28670257 | 28670075 | ID=cds.MS.gene012063.t1;Parent=MS.gene012063.t1 |
| chr8.2 | exon | 28669746 | 28669987 | 28669746 | ID=MS.gene012063.t1.exon3;Parent=MS.gene012063.t1 |
| chr8.2 | CDS | 28669746 | 28669987 | 28669746 | ID=cds.MS.gene012063.t1;Parent=MS.gene012063.t1 |
| chr8.2 | exon | 28669420 | 28669669 | 28669420 | ID=MS.gene012063.t1.exon4;Parent=MS.gene012063.t1 |
| chr8.2 | CDS | 28669420 | 28669669 | 28669420 | ID=cds.MS.gene012063.t1;Parent=MS.gene012063.t1 |
| Gene Sequence |
| Protein sequence |
