Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89620.t1 | XP_013446375.1 | 97.8 | 320 | 7 | 0 | 1 | 320 | 1 | 320 | 1.70E-186 | 661.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89620.t1 | I6YGS0 | 37.4 | 329 | 186 | 7 | 3 | 319 | 1 | 321 | 1.7e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89620.t1 | A0A072TSN0 | 97.8 | 320 | 7 | 0 | 1 | 320 | 1 | 320 | 1.2e-186 | 661.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene89620 | 0.810523 | 1.11E-50 | -1.69E-46 |
| MS.gene053826 | MS.gene89620 | 0.82617 | 3.14E-54 | -1.69E-46 |
| MS.gene058109 | MS.gene89620 | 0.806447 | 8.19E-50 | -1.69E-46 |
| MS.gene058111 | MS.gene89620 | 0.81531 | 9.87E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89620.t1 | MTR_8g076680 | 97.812 | 320 | 7 | 0 | 1 | 320 | 1 | 320 | 0.0 | 647 |
| MS.gene89620.t1 | MTR_8g076680 | 97.899 | 238 | 5 | 0 | 1 | 238 | 1 | 238 | 9.77e-177 | 488 |
| MS.gene89620.t1 | MTR_7g112963 | 47.678 | 323 | 157 | 4 | 3 | 317 | 1 | 319 | 1.41e-109 | 322 |
| MS.gene89620.t1 | MTR_7g113030 | 48.297 | 323 | 155 | 4 | 3 | 317 | 1 | 319 | 2.92e-109 | 320 |
| MS.gene89620.t1 | MTR_4g120240 | 47.664 | 321 | 164 | 3 | 1 | 317 | 35 | 355 | 7.53e-109 | 321 |
| MS.gene89620.t1 | MTR_7g113050 | 48.589 | 319 | 160 | 3 | 3 | 317 | 1 | 319 | 1.39e-108 | 319 |
| MS.gene89620.t1 | MTR_7g112960 | 46.749 | 323 | 160 | 5 | 3 | 317 | 1 | 319 | 2.10e-108 | 318 |
| MS.gene89620.t1 | MTR_7g112615 | 47.962 | 319 | 162 | 3 | 3 | 317 | 1 | 319 | 1.50e-107 | 316 |
| MS.gene89620.t1 | MTR_7g112970 | 47.500 | 320 | 159 | 5 | 3 | 317 | 1 | 316 | 2.33e-107 | 316 |
| MS.gene89620.t1 | MTR_7g108825 | 47.319 | 317 | 165 | 2 | 3 | 317 | 1 | 317 | 2.72e-107 | 315 |
| MS.gene89620.t1 | MTR_7g113020 | 47.022 | 319 | 165 | 3 | 3 | 317 | 1 | 319 | 5.53e-107 | 315 |
| MS.gene89620.t1 | MTR_7g112620 | 47.962 | 319 | 162 | 3 | 3 | 317 | 1 | 319 | 2.49e-106 | 313 |
| MS.gene89620.t1 | MTR_4g005160 | 44.720 | 322 | 171 | 5 | 3 | 317 | 1 | 322 | 2.64e-96 | 288 |
| MS.gene89620.t1 | MTR_7g113010 | 45.965 | 285 | 144 | 3 | 3 | 281 | 1 | 281 | 6.65e-90 | 280 |
| MS.gene89620.t1 | MTR_7g113050 | 49.580 | 238 | 118 | 2 | 3 | 238 | 1 | 238 | 1.47e-81 | 247 |
| MS.gene89620.t1 | MTR_7g108825 | 48.729 | 236 | 121 | 0 | 3 | 238 | 1 | 236 | 9.63e-81 | 245 |
| MS.gene89620.t1 | MTR_7g112615 | 48.739 | 238 | 120 | 2 | 3 | 238 | 1 | 238 | 1.81e-80 | 244 |
| MS.gene89620.t1 | MTR_4g089060 | 38.365 | 318 | 183 | 6 | 3 | 316 | 1 | 309 | 6.81e-74 | 230 |
| MS.gene89620.t1 | MTR_4g089040 | 38.050 | 318 | 184 | 6 | 3 | 316 | 1 | 309 | 1.87e-71 | 224 |
| MS.gene89620.t1 | MTR_4g089060 | 35.362 | 345 | 183 | 7 | 3 | 316 | 1 | 336 | 9.74e-69 | 218 |
| MS.gene89620.t1 | MTR_2g090240 | 35.514 | 321 | 195 | 6 | 3 | 319 | 1 | 313 | 6.31e-67 | 212 |
| MS.gene89620.t1 | MTR_2g090245 | 34.579 | 321 | 198 | 6 | 3 | 319 | 1 | 313 | 2.50e-65 | 208 |
| MS.gene89620.t1 | MTR_1g083480 | 53.797 | 158 | 70 | 1 | 3 | 157 | 1 | 158 | 1.27e-59 | 189 |
| MS.gene89620.t1 | MTR_7g112615 | 52.201 | 159 | 75 | 1 | 3 | 160 | 1 | 159 | 1.45e-59 | 189 |
| MS.gene89620.t1 | MTR_4g089060 | 39.827 | 231 | 132 | 3 | 3 | 231 | 1 | 226 | 2.36e-58 | 187 |
| MS.gene89620.t1 | MTR_3g024250 | 51.429 | 105 | 51 | 0 | 49 | 153 | 3 | 107 | 3.32e-32 | 117 |
| MS.gene89620.t1 | MTR_7g112910 | 30.769 | 247 | 111 | 8 | 76 | 317 | 4 | 195 | 2.41e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89620.t1 | AT3G51000 | 63.636 | 319 | 111 | 4 | 4 | 318 | 3 | 320 | 1.18e-152 | 431 |
| MS.gene89620.t1 | AT4G02340 | 48.125 | 320 | 157 | 5 | 3 | 317 | 1 | 316 | 9.40e-108 | 317 |
| MS.gene89620.t1 | AT3G05600 | 46.646 | 328 | 158 | 6 | 3 | 317 | 1 | 324 | 4.65e-101 | 300 |
| MS.gene89620.t1 | AT2G26740 | 48.287 | 321 | 157 | 5 | 6 | 317 | 1 | 321 | 2.11e-92 | 278 |
| MS.gene89620.t1 | AT4G15960 | 41.667 | 324 | 180 | 4 | 3 | 317 | 51 | 374 | 2.01e-88 | 270 |
| MS.gene89620.t1 | AT2G26750 | 47.003 | 317 | 160 | 5 | 6 | 314 | 1 | 317 | 2.40e-88 | 267 |
| MS.gene89620.t1 | AT4G15955 | 41.956 | 317 | 146 | 8 | 7 | 310 | 6 | 297 | 1.83e-81 | 249 |
| MS.gene89620.t1 | AT3G05600 | 46.964 | 247 | 116 | 5 | 3 | 238 | 1 | 243 | 1.36e-74 | 229 |
| MS.gene89620.t1 | AT4G15955 | 50.867 | 173 | 74 | 3 | 7 | 168 | 6 | 178 | 1.15e-56 | 182 |
| MS.gene89620.t1 | AT4G15955 | 50.909 | 165 | 70 | 3 | 7 | 160 | 6 | 170 | 1.18e-53 | 174 |
Find 80 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAGCATGATAACCATTT+TGG | 0.142448 | 8.3:+27402703 | None:intergenic |
| ATTGGTCTTCTTGATCATTT+TGG | 0.150021 | 8.3:-27402597 | MS.gene89620:CDS |
| CGCCAAGAATACCATATTTC+TGG | 0.182663 | 8.3:+27402747 | None:intergenic |
| AGCTCATGTTTGCCAATTTC+AGG | 0.222501 | 8.3:-27402110 | MS.gene89620:intron |
| TTCATGGTTTCCCAGAAATA+TGG | 0.287073 | 8.3:-27402758 | MS.gene89620:CDS |
| CTCAACTACTTGGCCCAAAA+TGG | 0.297865 | 8.3:-27402717 | MS.gene89620:CDS |
| CCTAATCTAGAGATAGTTTA+CGG | 0.303872 | 8.3:+27401455 | None:intergenic |
| AAGGGTAATCTACCTGAAAT+TGG | 0.307281 | 8.3:+27402098 | None:intergenic |
| TCCCAGAAATATGGTATTCT+TGG | 0.309032 | 8.3:-27402749 | MS.gene89620:CDS |
| GTGTAGGAATTGGGGTTGAT+AGG | 0.327908 | 8.3:+27402645 | None:intergenic |
| GTTCCAACTAAGTTTATTGC+TGG | 0.343480 | 8.3:-27401640 | MS.gene89620:CDS |
| CCACTAGTTCTACTCCTTCA+TGG | 0.349801 | 8.3:-27402774 | MS.gene89620:CDS |
| GATGGCACCTAAGTCTATTT+AGG | 0.355832 | 8.3:-27402234 | MS.gene89620:CDS |
| CCGTAAACTATCTCTAGATT+AGG | 0.356075 | 8.3:-27401455 | None:intergenic |
| TGAATAAAGGCATATGTAGT+AGG | 0.358866 | 8.3:-27402280 | MS.gene89620:intron |
| TGATGAAGAGTGTAGGAATT+GGG | 0.368332 | 8.3:+27402636 | None:intergenic |
| ACAAACCCCTTCACTCTATC+AGG | 0.370013 | 8.3:+27402211 | None:intergenic |
| CGTAAACTATCTCTAGATTA+GGG | 0.379541 | 8.3:-27401454 | None:intergenic |
| TGATTTCTTGCCAACTCCTT+CGG | 0.380707 | 8.3:-27401885 | MS.gene89620:CDS |
| TCTCCAGCAATAAACTTAGT+TGG | 0.391857 | 8.3:+27401637 | None:intergenic |
| GCAGACAAATTCCAAGAGTC+TGG | 0.396715 | 8.3:-27401821 | MS.gene89620:CDS |
| CACATCGTAGGTGACCTTAT+TGG | 0.407023 | 8.3:-27402615 | MS.gene89620:CDS |
| AGAGAAAGCTCAACAAGTTT+CGG | 0.408255 | 8.3:-27401497 | MS.gene89620:CDS |
| GCACCTGATCTAAGAGGATA+TGG | 0.428528 | 8.3:-27402681 | MS.gene89620:CDS |
| TACATGTATATTTATTCCGT+TGG | 0.437349 | 8.3:+27402815 | None:intergenic |
| GAAACTATAAGAAAAGTATA+CGG | 0.452414 | 8.3:-27402139 | MS.gene89620:CDS |
| GTTGGAGATCTTGGAAAGTA+AGG | 0.455828 | 8.3:+27402175 | None:intergenic |
| TAGAGATAGTTTACGGATGA+AGG | 0.460572 | 8.3:+27401462 | None:intergenic |
| CTTGAAGTGGTTATACTAGA+TGG | 0.462250 | 8.3:-27401538 | MS.gene89620:CDS |
| CACCGGTGAAACCAGACTCT+TGG | 0.472500 | 8.3:+27401810 | None:intergenic |
| TTCCAAGAGTCTGGTTTCAC+CGG | 0.475025 | 8.3:-27401812 | MS.gene89620:CDS |
| AATGATCAAGAAGACCAATA+AGG | 0.475165 | 8.3:+27402601 | None:intergenic |
| GCCAAGAATACCATATTTCT+GGG | 0.482112 | 8.3:+27402748 | None:intergenic |
| GGGCCAAGTAGTTGAGTTGG+TGG | 0.492922 | 8.3:+27402724 | None:intergenic |
| TCACCATATCCTCTTAGATC+AGG | 0.494603 | 8.3:+27402678 | None:intergenic |
| GTGATGAAGAGTGTAGGAAT+TGG | 0.497504 | 8.3:+27402635 | None:intergenic |
| AGTATAACCACTTCAAGGTT+GGG | 0.498465 | 8.3:+27401544 | None:intergenic |
| CATCTAGTATAACCACTTCA+AGG | 0.501344 | 8.3:+27401539 | None:intergenic |
| TTTGGGCCAAGTAGTTGAGT+TGG | 0.505675 | 8.3:+27402721 | None:intergenic |
| CATGTAGCAGAACAAGGAAC+AGG | 0.506519 | 8.3:-27402798 | MS.gene89620:CDS |
| TATCAGGCCTAAATAGACTT+AGG | 0.515370 | 8.3:+27402227 | None:intergenic |
| CATATGTAGTAGGATCTGAC+TGG | 0.526683 | 8.3:-27402270 | MS.gene89620:CDS |
| ATTGCTGGAGACAAAGATGT+TGG | 0.531380 | 8.3:-27401625 | MS.gene89620:CDS |
| GTTATCTTTGATCCTTGCCA+TGG | 0.532855 | 8.3:+27401664 | None:intergenic |
| GCGCCACCAACTCAACTACT+TGG | 0.535864 | 8.3:-27402727 | MS.gene89620:CDS |
| TATAACAGCTCCTCCTGGCA+TGG | 0.539454 | 8.3:-27401915 | MS.gene89620:CDS |
| TAGTATAACCACTTCAAGGT+TGG | 0.545090 | 8.3:+27401543 | None:intergenic |
| TTGCGTGGTTGGCAGGAACC+AGG | 0.547693 | 8.3:-27402016 | MS.gene89620:intron |
| AAATCAACGATCTCCATGCC+AGG | 0.551610 | 8.3:+27401902 | None:intergenic |
| TCTGACTGGGGAGCAAACAT+TGG | 0.557088 | 8.3:-27402256 | MS.gene89620:CDS |
| TCTTGTTCCCAACCTTGAAG+TGG | 0.566749 | 8.3:-27401551 | MS.gene89620:CDS |
| TTTAGGCCTGATAGAGTGAA+GGG | 0.566974 | 8.3:-27402217 | MS.gene89620:CDS |
| ATAAGAAAAGTATACGGAGA+TGG | 0.570679 | 8.3:-27402133 | MS.gene89620:CDS |
| ACTGGGGAGCAAACATTGGA+TGG | 0.572887 | 8.3:-27402252 | MS.gene89620:CDS |
| GATGGCAAAACCGAAGGAGT+TGG | 0.577231 | 8.3:+27401875 | None:intergenic |
| GCTGTTGCACCTGATCTAAG+AGG | 0.588705 | 8.3:-27402687 | MS.gene89620:CDS |
| ATATGTAGTAGGATCTGACT+GGG | 0.595018 | 8.3:-27402269 | MS.gene89620:CDS |
| AAAGCTCTCTCTGCACGACC+TGG | 0.595328 | 8.3:+27401998 | None:intergenic |
| ACTCAATGGTTACAGAAGCT+GGG | 0.603841 | 8.3:-27401698 | MS.gene89620:intron |
| CACCAAAGAATCAAAACCAA+CGG | 0.604850 | 8.3:-27402831 | MS.gene89620:CDS |
| ATTTAGGCCTGATAGAGTGA+AGG | 0.608580 | 8.3:-27402218 | MS.gene89620:CDS |
| GATAACCGAGGAAGAACTCA+TGG | 0.608940 | 8.3:-27401849 | MS.gene89620:CDS |
| ATATTTCTGGGAAACCATGA+AGG | 0.612668 | 8.3:+27402760 | None:intergenic |
| CCATGAAGGAGTAGAACTAG+TGG | 0.626025 | 8.3:+27402774 | None:intergenic |
| ATCCACGATGGCAAAACCGA+AGG | 0.626989 | 8.3:+27401869 | None:intergenic |
| AATATACATGTAGCAGAACA+AGG | 0.633512 | 8.3:-27402804 | MS.gene89620:CDS |
| ATTCACTTCACTCATGAACA+TGG | 0.637224 | 8.3:+27402854 | None:intergenic |
| GAAAGCTCAACAAGTTTCGG+AGG | 0.645089 | 8.3:-27401494 | MS.gene89620:CDS |
| TTAGGCCTGATAGAGTGAAG+GGG | 0.646633 | 8.3:-27402216 | MS.gene89620:CDS |
| GAACTTCTAGCACCATGGCA+AGG | 0.648382 | 8.3:-27401676 | MS.gene89620:CDS |
| GATGAAGAGTGTAGGAATTG+GGG | 0.650623 | 8.3:+27402637 | None:intergenic |
| ACGATAGTAATTGAATGCAC+CGG | 0.650723 | 8.3:+27401793 | None:intergenic |
| TCTTCCTCGGTTATCCACGA+TGG | 0.662226 | 8.3:+27401857 | None:intergenic |
| TACACTCTTCATCACATCGT+AGG | 0.670287 | 8.3:-27402627 | MS.gene89620:CDS |
| TACGATGTGATGAAGAGTGT+AGG | 0.674600 | 8.3:+27402629 | None:intergenic |
| TTTGCCATCGTGGATAACCG+AGG | 0.678647 | 8.3:-27401861 | MS.gene89620:CDS |
| GCTGGGAACTTCTAGCACCA+TGG | 0.691193 | 8.3:-27401681 | MS.gene89620:CDS |
| ATTCAATTACTATCGTGCAA+TGG | 0.705117 | 8.3:-27401786 | MS.gene89620:CDS |
| TCAACGATCTCCATGCCAGG+AGG | 0.721559 | 8.3:+27401905 | None:intergenic |
| TATGTAGTAGGATCTGACTG+GGG | 0.804727 | 8.3:-27402268 | MS.gene89620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAACAAAAAAACAT+AGG | + | chr8.3:27402567-27402586 | None:intergenic | 15.0% |
| !! | AATCAATAAAATTGAGATAG+AGG | + | chr8.3:27401825-27401844 | None:intergenic | 20.0% |
| !! | ACAAAAAAACATAGGAAAAA+TGG | + | chr8.3:27402559-27402578 | None:intergenic | 20.0% |
| !!! | GAAACTATAAGAAAAGTATA+CGG | - | chr8.3:27402169-27402188 | MS.gene89620:CDS | 20.0% |
| ! | AACTTTATCAAGCCATAAAA+GGG | + | chr8.3:27402231-27402250 | None:intergenic | 25.0% |
| ! | TAACTTTATCAAGCCATAAA+AGG | + | chr8.3:27402232-27402251 | None:intergenic | 25.0% |
| ! | TACATGTATATTTATTCCGT+TGG | + | chr8.3:27401496-27401515 | None:intergenic | 25.0% |
| ! | TTAGGAAAAAGGATAGTTTA+AGG | + | chr8.3:27401988-27402007 | None:intergenic | 25.0% |
| !! | TAATTTTCATTGAAATTGCG+TGG | - | chr8.3:27402277-27402296 | MS.gene89620:intron | 25.0% |
| !!! | AAAGATGTTGGTTTTCAAAA+TGG | - | chr8.3:27402695-27402714 | MS.gene89620:CDS | 25.0% |
| !!! | AAGATGTTGGTTTTCAAAAT+GGG | - | chr8.3:27402696-27402715 | MS.gene89620:CDS | 25.0% |
| AACCATTGAGTGTGAATAAA+TGG | + | chr8.3:27402601-27402620 | None:intergenic | 30.0% | |
| AATATACATGTAGCAGAACA+AGG | - | chr8.3:27401504-27401523 | MS.gene89620:CDS | 30.0% | |
| AATGATCAAGAAGACCAATA+AGG | + | chr8.3:27401710-27401729 | None:intergenic | 30.0% | |
| AGAGATAGAGCGAATAAATT+AGG | + | chr8.3:27402006-27402025 | None:intergenic | 30.0% | |
| ATAGGAAAAATGGTACTTAC+AGG | + | chr8.3:27402549-27402568 | None:intergenic | 30.0% | |
| ATCCATTTATTCACACTCAA+TGG | - | chr8.3:27402596-27402615 | MS.gene89620:CDS | 30.0% | |
| ATTCAATTACTATCGTGCAA+TGG | - | chr8.3:27402522-27402541 | MS.gene89620:intron | 30.0% | |
| CTTTAGGTCTTAATTTAGGT+TGG | - | chr8.3:27401902-27401921 | MS.gene89620:CDS | 30.0% | |
| GAGCGAATAAATTAGGAAAA+AGG | + | chr8.3:27401999-27402018 | None:intergenic | 30.0% | |
| TAAAATTGAGATAGAGGTCT+TGG | + | chr8.3:27401819-27401838 | None:intergenic | 30.0% | |
| ! | AACAGCATGATAACCATTTT+GGG | + | chr8.3:27401607-27401626 | None:intergenic | 30.0% |
| ! | ATAAGAAAAGTATACGGAGA+TGG | - | chr8.3:27402175-27402194 | MS.gene89620:CDS | 30.0% |
| ! | ATCGCTTTAGGTCTTAATTT+AGG | - | chr8.3:27401898-27401917 | MS.gene89620:CDS | 30.0% |
| ! | GCTCTATCTCTTTTGAATAA+AGG | - | chr8.3:27402015-27402034 | MS.gene89620:intron | 30.0% |
| ! | TGAATAAAGGCATATGTAGT+AGG | - | chr8.3:27402028-27402047 | MS.gene89620:intron | 30.0% |
| !! | AGAAGTTTTTGCTGATTACA+TGG | - | chr8.3:27402362-27402381 | MS.gene89620:intron | 30.0% |
| !! | GTTTCAACAGTTTTATCTGT+TGG | + | chr8.3:27402154-27402173 | None:intergenic | 30.0% |
| !! | TGATCATTTTGGTGAAGAAA+AGG | - | chr8.3:27401722-27401741 | MS.gene89620:intron | 30.0% |
| !!! | AGATGTTGGTTTTCAAAATG+GGG | - | chr8.3:27402697-27402716 | MS.gene89620:CDS | 30.0% |
| !!! | ATTGGTCTTCTTGATCATTT+TGG | - | chr8.3:27401711-27401730 | MS.gene89620:intron | 30.0% |
| AAAAACCATGAGTTCTTCCT+CGG | + | chr8.3:27402467-27402486 | None:intergenic | 35.0% | |
| AAGCGATAGACGTAAACTTA+AGG | + | chr8.3:27401885-27401904 | None:intergenic | 35.0% | |
| AAGGGTAATCTACCTGAAAT+TGG | + | chr8.3:27402213-27402232 | None:intergenic | 35.0% | |
| AAGTTTACGTCTATCGCTTT+AGG | - | chr8.3:27401886-27401905 | MS.gene89620:CDS | 35.0% | |
| ACGATAGTAATTGAATGCAC+CGG | + | chr8.3:27402518-27402537 | None:intergenic | 35.0% | |
| AGAGAAAGCTCAACAAGTTT+CGG | - | chr8.3:27402811-27402830 | MS.gene89620:CDS | 35.0% | |
| AGTATAACCACTTCAAGGTT+GGG | + | chr8.3:27402767-27402786 | None:intergenic | 35.0% | |
| ATATGTAGTAGGATCTGACT+GGG | - | chr8.3:27402039-27402058 | MS.gene89620:intron | 35.0% | |
| CACCAAAGAATCAAAACCAA+CGG | - | chr8.3:27401477-27401496 | MS.gene89620:CDS | 35.0% | |
| CATCTAGTATAACCACTTCA+AGG | + | chr8.3:27402772-27402791 | None:intergenic | 35.0% | |
| CTTGAAGTGGTTATACTAGA+TGG | - | chr8.3:27402770-27402789 | MS.gene89620:CDS | 35.0% | |
| GCCAAGAATACCATATTTCT+GGG | + | chr8.3:27401563-27401582 | None:intergenic | 35.0% | |
| GTTCCAACTAAGTTTATTGC+TGG | - | chr8.3:27402668-27402687 | MS.gene89620:CDS | 35.0% | |
| TAGAGATAGTTTACGGATGA+AGG | + | chr8.3:27402849-27402868 | None:intergenic | 35.0% | |
| TAGTATAACCACTTCAAGGT+TGG | + | chr8.3:27402768-27402787 | None:intergenic | 35.0% | |
| TATCAGGCCTAAATAGACTT+AGG | + | chr8.3:27402084-27402103 | None:intergenic | 35.0% | |
| TCCCAGAAATATGGTATTCT+TGG | - | chr8.3:27401559-27401578 | MS.gene89620:CDS | 35.0% | |
| TCTCCAGCAATAAACTTAGT+TGG | + | chr8.3:27402674-27402693 | None:intergenic | 35.0% | |
| TTCATGGTTTCCCAGAAATA+TGG | - | chr8.3:27401550-27401569 | MS.gene89620:CDS | 35.0% | |
| TTTCATTGAAATTGCGTGGT+TGG | - | chr8.3:27402281-27402300 | MS.gene89620:intron | 35.0% | |
| ! | CAACAGCATGATAACCATTT+TGG | + | chr8.3:27401608-27401627 | None:intergenic | 35.0% |
| ! | GGTACAAAAGATTTTGTGGA+AGG | - | chr8.3:27402719-27402738 | MS.gene89620:CDS | 35.0% |
| ! | GTTTTATCTGTTGGAGATCT+TGG | + | chr8.3:27402145-27402164 | None:intergenic | 35.0% |
| ! | TCAGGTAGATTACCCTTTTA+TGG | - | chr8.3:27402216-27402235 | MS.gene89620:CDS | 35.0% |
| ! | TGATGAAGAGTGTAGGAATT+GGG | + | chr8.3:27401675-27401694 | None:intergenic | 35.0% |
| !! | ATATTTCTGGGAAACCATGA+AGG | + | chr8.3:27401551-27401570 | None:intergenic | 35.0% |
| !!! | GATGTTGGTTTTCAAAATGG+GGG | - | chr8.3:27402698-27402717 | MS.gene89620:CDS | 35.0% |
| !!! | TTCCGTTGGTTTTGATTCTT+TGG | + | chr8.3:27401482-27401501 | None:intergenic | 35.0% |
| ACTCAATGGTTACAGAAGCT+GGG | - | chr8.3:27402610-27402629 | MS.gene89620:CDS | 40.0% | |
| AGCTCATGTTTGCCAATTTC+AGG | - | chr8.3:27402198-27402217 | MS.gene89620:CDS | 40.0% | |
| ATTGCTGGAGACAAAGATGT+TGG | - | chr8.3:27402683-27402702 | MS.gene89620:CDS | 40.0% | |
| ATTTAGGCCTGATAGAGTGA+AGG | - | chr8.3:27402090-27402109 | MS.gene89620:intron | 40.0% | |
| CATATGTAGTAGGATCTGAC+TGG | - | chr8.3:27402038-27402057 | MS.gene89620:intron | 40.0% | |
| CGCCAAGAATACCATATTTC+TGG | + | chr8.3:27401564-27401583 | None:intergenic | 40.0% | |
| GATGGCACCTAAGTCTATTT+AGG | - | chr8.3:27402074-27402093 | MS.gene89620:intron | 40.0% | |
| GCAACATGAAAATGTCACGT+TGG | + | chr8.3:27401795-27401814 | None:intergenic | 40.0% | |
| GGAGGTCTATCTACAACATT+TGG | + | chr8.3:27401762-27401781 | None:intergenic | 40.0% | |
| GTTATCTTTGATCCTTGCCA+TGG | + | chr8.3:27402647-27402666 | None:intergenic | 40.0% | |
| GTTGGAGATCTTGGAAAGTA+AGG | + | chr8.3:27402136-27402155 | None:intergenic | 40.0% | |
| TACACTCTTCATCACATCGT+AGG | - | chr8.3:27401681-27401700 | MS.gene89620:CDS | 40.0% | |
| TAGACGTAAACTTAAGGCCT+CGG | + | chr8.3:27401879-27401898 | None:intergenic | 40.0% | |
| TATGTAGTAGGATCTGACTG+GGG | - | chr8.3:27402040-27402059 | MS.gene89620:intron | 40.0% | |
| TCACCATATCCTCTTAGATC+AGG | + | chr8.3:27401633-27401652 | None:intergenic | 40.0% | |
| TGATTTCTTGCCAACTCCTT+CGG | - | chr8.3:27402423-27402442 | MS.gene89620:intron | 40.0% | |
| TGTCACGTTGGACATGAATT+TGG | + | chr8.3:27401783-27401802 | None:intergenic | 40.0% | |
| TGTTTGAGTCAATAACACCG+AGG | - | chr8.3:27401859-27401878 | MS.gene89620:CDS | 40.0% | |
| TTTAGGCCTGATAGAGTGAA+GGG | - | chr8.3:27402091-27402110 | MS.gene89620:intron | 40.0% | |
| ! | CATTTTATAACAGCTCCTCC+TGG | - | chr8.3:27402388-27402407 | MS.gene89620:intron | 40.0% |
| ! | GATGAAGAGTGTAGGAATTG+GGG | + | chr8.3:27401674-27401693 | None:intergenic | 40.0% |
| ! | GTGATGAAGAGTGTAGGAAT+TGG | + | chr8.3:27401676-27401695 | None:intergenic | 40.0% |
| ! | TACGATGTGATGAAGAGTGT+AGG | + | chr8.3:27401682-27401701 | None:intergenic | 40.0% |
| !! | TGGGGGTACAAAAGATTTTG+TGG | - | chr8.3:27402715-27402734 | MS.gene89620:CDS | 40.0% |
| AAATCAACGATCTCCATGCC+AGG | + | chr8.3:27402409-27402428 | None:intergenic | 45.0% | |
| ACAAACCCCTTCACTCTATC+AGG | + | chr8.3:27402100-27402119 | None:intergenic | 45.0% | |
| ATTGAAATTGCGTGGTTGGC+AGG | - | chr8.3:27402285-27402304 | MS.gene89620:intron | 45.0% | |
| CACATCGTAGGTGACCTTAT+TGG | - | chr8.3:27401693-27401712 | MS.gene89620:intron | 45.0% | |
| CACGTTGGACATGAATTTGG+AGG | + | chr8.3:27401780-27401799 | None:intergenic | 45.0% | |
| CACTCAATGGTTACAGAAGC+TGG | - | chr8.3:27402609-27402628 | MS.gene89620:CDS | 45.0% | |
| CATGTAGCAGAACAAGGAAC+AGG | - | chr8.3:27401510-27401529 | MS.gene89620:CDS | 45.0% | |
| CCATGAAGGAGTAGAACTAG+TGG | + | chr8.3:27401537-27401556 | None:intergenic | 45.0% | |
| CTCAACTACTTGGCCCAAAA+TGG | - | chr8.3:27401591-27401610 | MS.gene89620:CDS | 45.0% | |
| GAAAGCTCAACAAGTTTCGG+AGG | - | chr8.3:27402814-27402833 | MS.gene89620:CDS | 45.0% | |
| GATAACCGAGGAAGAACTCA+TGG | - | chr8.3:27402459-27402478 | MS.gene89620:intron | 45.0% | |
| GCACCTGATCTAAGAGGATA+TGG | - | chr8.3:27401627-27401646 | MS.gene89620:CDS | 45.0% | |
| GCAGACAAATTCCAAGAGTC+TGG | - | chr8.3:27402487-27402506 | MS.gene89620:intron | 45.0% | |
| TCTTGTTCCCAACCTTGAAG+TGG | - | chr8.3:27402757-27402776 | MS.gene89620:CDS | 45.0% | |
| TTAGGCCTGATAGAGTGAAG+GGG | - | chr8.3:27402092-27402111 | MS.gene89620:intron | 45.0% | |
| TTTGGGCCAAGTAGTTGAGT+TGG | + | chr8.3:27401590-27401609 | None:intergenic | 45.0% | |
| ! | GTGTAGGAATTGGGGTTGAT+AGG | + | chr8.3:27401666-27401685 | None:intergenic | 45.0% |
| ! | TTCCAAGAGTCTGGTTTCAC+CGG | - | chr8.3:27402496-27402515 | MS.gene89620:intron | 45.0% |
| !! | CCACTAGTTCTACTCCTTCA+TGG | - | chr8.3:27401534-27401553 | MS.gene89620:CDS | 45.0% |
| ACTGGGGAGCAAACATTGGA+TGG | - | chr8.3:27402056-27402075 | MS.gene89620:intron | 50.0% | |
| ATCCACGATGGCAAAACCGA+AGG | + | chr8.3:27402442-27402461 | None:intergenic | 50.0% | |
| GAACTTCTAGCACCATGGCA+AGG | - | chr8.3:27402632-27402651 | MS.gene89620:CDS | 50.0% | |
| GATGGCAAAACCGAAGGAGT+TGG | + | chr8.3:27402436-27402455 | None:intergenic | 50.0% | |
| GCTGTTGCACCTGATCTAAG+AGG | - | chr8.3:27401621-27401640 | MS.gene89620:CDS | 50.0% | |
| TATAACAGCTCCTCCTGGCA+TGG | - | chr8.3:27402393-27402412 | MS.gene89620:intron | 50.0% | |
| TCTGACTGGGGAGCAAACAT+TGG | - | chr8.3:27402052-27402071 | MS.gene89620:intron | 50.0% | |
| TCTTCCTCGGTTATCCACGA+TGG | + | chr8.3:27402454-27402473 | None:intergenic | 50.0% | |
| TTTGCCATCGTGGATAACCG+AGG | - | chr8.3:27402447-27402466 | MS.gene89620:intron | 50.0% | |
| AAAGCTCTCTCTGCACGACC+TGG | + | chr8.3:27402313-27402332 | None:intergenic | 55.0% | |
| CACCGGTGAAACCAGACTCT+TGG | + | chr8.3:27402501-27402520 | None:intergenic | 55.0% | |
| GCGCCACCAACTCAACTACT+TGG | - | chr8.3:27401581-27401600 | MS.gene89620:CDS | 55.0% | |
| GCTGGGAACTTCTAGCACCA+TGG | - | chr8.3:27402627-27402646 | MS.gene89620:CDS | 55.0% | |
| TCAACGATCTCCATGCCAGG+AGG | + | chr8.3:27402406-27402425 | None:intergenic | 55.0% | |
| ! | CTCCTTCGGTTTTGCCATCG+TGG | - | chr8.3:27402437-27402456 | MS.gene89620:intron | 55.0% |
| !! | GGGCCAAGTAGTTGAGTTGG+TGG | + | chr8.3:27401587-27401606 | None:intergenic | 55.0% |
| TTGCGTGGTTGGCAGGAACC+AGG | - | chr8.3:27402292-27402311 | MS.gene89620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 27401456 | 27402874 | 27401456 | ID=MS.gene89620 |
| chr8.3 | mRNA | 27401456 | 27402874 | 27401456 | ID=MS.gene89620.t1;Parent=MS.gene89620 |
| chr8.3 | exon | 27402587 | 27402874 | 27402587 | ID=MS.gene89620.t1.exon1;Parent=MS.gene89620.t1 |
| chr8.3 | CDS | 27402587 | 27402874 | 27402587 | ID=cds.MS.gene89620.t1;Parent=MS.gene89620.t1 |
| chr8.3 | exon | 27402111 | 27402293 | 27402111 | ID=MS.gene89620.t1.exon2;Parent=MS.gene89620.t1 |
| chr8.3 | CDS | 27402111 | 27402293 | 27402111 | ID=cds.MS.gene89620.t1;Parent=MS.gene89620.t1 |
| chr8.3 | exon | 27401782 | 27402023 | 27401782 | ID=MS.gene89620.t1.exon3;Parent=MS.gene89620.t1 |
| chr8.3 | CDS | 27401782 | 27402023 | 27401782 | ID=cds.MS.gene89620.t1;Parent=MS.gene89620.t1 |
| chr8.3 | exon | 27401456 | 27401705 | 27401456 | ID=MS.gene89620.t1.exon4;Parent=MS.gene89620.t1 |
| chr8.3 | CDS | 27401456 | 27401705 | 27401456 | ID=cds.MS.gene89620.t1;Parent=MS.gene89620.t1 |
| Gene Sequence |
| Protein sequence |
