Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000893.t1 | GAU11476.1 | 87.8 | 319 | 38 | 1 | 1 | 319 | 1 | 318 | 3.50E-168 | 600.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000893.t1 | I6YGS0 | 36.9 | 317 | 186 | 5 | 7 | 316 | 7 | 316 | 2.7e-52 | 207.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000893.t1 | A2Q320 | 85.0 | 319 | 48 | 0 | 1 | 319 | 1 | 319 | 9.2e-163 | 582.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000893 | MS.gene066361 | PPI |
| MS.gene000893 | MS.gene071500 | PPI |
| MS.gene000893 | MS.gene041604 | PPI |
| MS.gene000893 | MS.gene77823 | PPI |
| MS.gene000893 | MS.gene025707 | PPI |
| MS.gene000893 | MS.gene22955 | PPI |
| MS.gene000893 | MS.gene035369 | PPI |
| MS.gene035367 | MS.gene000893 | PPI |
| MS.gene000893 | MS.gene76453 | PPI |
| MS.gene000893 | MS.gene035373 | PPI |
| MS.gene000893 | MS.gene012063 | PPI |
| MS.gene066360 | MS.gene000893 | PPI |
| MS.gene89620 | MS.gene000893 | PPI |
| MS.gene000893 | MS.gene035371 | PPI |
| MS.gene000893 | MS.gene071502 | PPI |
| MS.gene000893 | MS.gene071504 | PPI |
| MS.gene000893 | MS.gene07001 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000893.t1 | MTR_7g113020 | 84.953 | 319 | 48 | 0 | 1 | 319 | 1 | 319 | 0.0 | 568 |
| MS.gene000893.t1 | MTR_7g113050 | 83.072 | 319 | 54 | 0 | 1 | 319 | 1 | 319 | 0.0 | 565 |
| MS.gene000893.t1 | MTR_7g113030 | 82.759 | 319 | 55 | 0 | 1 | 319 | 1 | 319 | 0.0 | 562 |
| MS.gene000893.t1 | MTR_7g112620 | 82.132 | 319 | 57 | 0 | 1 | 319 | 1 | 319 | 0.0 | 558 |
| MS.gene000893.t1 | MTR_7g112615 | 81.505 | 319 | 59 | 0 | 1 | 319 | 1 | 319 | 0.0 | 552 |
| MS.gene000893.t1 | MTR_7g112960 | 72.136 | 323 | 82 | 2 | 1 | 319 | 1 | 319 | 3.46e-179 | 498 |
| MS.gene000893.t1 | MTR_7g112963 | 73.832 | 321 | 80 | 2 | 1 | 319 | 1 | 319 | 2.08e-177 | 493 |
| MS.gene000893.t1 | MTR_7g112970 | 71.473 | 319 | 88 | 2 | 1 | 319 | 1 | 316 | 1.47e-174 | 486 |
| MS.gene000893.t1 | MTR_4g005160 | 70.898 | 323 | 89 | 3 | 1 | 319 | 1 | 322 | 1.40e-173 | 484 |
| MS.gene000893.t1 | MTR_7g113050 | 83.613 | 238 | 39 | 0 | 1 | 238 | 1 | 238 | 6.31e-154 | 431 |
| MS.gene000893.t1 | MTR_7g112615 | 82.353 | 238 | 42 | 0 | 1 | 238 | 1 | 238 | 2.24e-151 | 424 |
| MS.gene000893.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 1.08e-147 | 428 |
| MS.gene000893.t1 | MTR_4g120240 | 60.748 | 321 | 122 | 3 | 1 | 319 | 37 | 355 | 4.87e-141 | 402 |
| MS.gene000893.t1 | MTR_7g108825 | 57.994 | 319 | 132 | 2 | 1 | 319 | 1 | 317 | 4.53e-138 | 394 |
| MS.gene000893.t1 | MTR_7g112910 | 70.683 | 249 | 18 | 5 | 72 | 319 | 1 | 195 | 1.89e-111 | 322 |
| MS.gene000893.t1 | MTR_8g076680 | 46.395 | 319 | 167 | 3 | 1 | 319 | 3 | 317 | 3.04e-102 | 303 |
| MS.gene000893.t1 | MTR_7g108825 | 57.563 | 238 | 99 | 2 | 1 | 238 | 1 | 236 | 2.04e-99 | 292 |
| MS.gene000893.t1 | MTR_7g112615 | 81.761 | 159 | 29 | 0 | 1 | 159 | 1 | 159 | 7.05e-96 | 281 |
| MS.gene000893.t1 | MTR_1g083480 | 73.585 | 159 | 38 | 2 | 1 | 156 | 1 | 158 | 8.49e-83 | 248 |
| MS.gene000893.t1 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 4.12e-81 | 246 |
| MS.gene000893.t1 | MTR_2g090240 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 2.49e-66 | 211 |
| MS.gene000893.t1 | MTR_2g090245 | 36.760 | 321 | 189 | 7 | 1 | 318 | 1 | 310 | 1.06e-63 | 204 |
| MS.gene000893.t1 | MTR_4g089060 | 36.760 | 321 | 188 | 6 | 1 | 318 | 1 | 309 | 1.38e-62 | 201 |
| MS.gene000893.t1 | MTR_4g089040 | 35.202 | 321 | 193 | 6 | 1 | 318 | 1 | 309 | 6.01e-60 | 194 |
| MS.gene000893.t1 | MTR_4g089060 | 34.195 | 348 | 187 | 7 | 1 | 318 | 1 | 336 | 1.58e-57 | 189 |
| MS.gene000893.t1 | MTR_3g024250 | 72.897 | 107 | 29 | 0 | 46 | 152 | 1 | 107 | 2.50e-53 | 171 |
| MS.gene000893.t1 | MTR_4g089060 | 39.485 | 233 | 132 | 3 | 1 | 231 | 1 | 226 | 3.60e-53 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000893.t1 | AT3G05600 | 61.728 | 324 | 119 | 4 | 1 | 319 | 1 | 324 | 2.19e-150 | 426 |
| MS.gene000893.t1 | AT4G02340 | 56.075 | 321 | 134 | 4 | 1 | 319 | 1 | 316 | 1.03e-133 | 383 |
| MS.gene000893.t1 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 6.71e-126 | 365 |
| MS.gene000893.t1 | AT2G26740 | 59.006 | 322 | 125 | 4 | 4 | 319 | 1 | 321 | 6.07e-125 | 360 |
| MS.gene000893.t1 | AT2G26750 | 57.321 | 321 | 131 | 4 | 4 | 319 | 1 | 320 | 8.19e-120 | 347 |
| MS.gene000893.t1 | AT3G05600 | 62.140 | 243 | 87 | 4 | 1 | 238 | 1 | 243 | 4.64e-110 | 320 |
| MS.gene000893.t1 | AT4G15955 | 50.769 | 325 | 124 | 5 | 5 | 319 | 6 | 304 | 5.47e-106 | 311 |
| MS.gene000893.t1 | AT3G51000 | 44.648 | 327 | 160 | 6 | 3 | 319 | 4 | 319 | 5.51e-97 | 290 |
| MS.gene000893.t1 | AT4G15955 | 57.471 | 174 | 64 | 2 | 5 | 168 | 6 | 179 | 5.68e-68 | 211 |
| MS.gene000893.t1 | AT4G15955 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 7.65e-64 | 200 |
Find 87 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGACTCTTTC+AGG | 0.142456 | 7.4:+3819897 | None:intergenic |
| CTACTATATCTGCAGATTTC+AGG | 0.187669 | 7.4:-3819796 | MS.gene000893:intron |
| CATGATTGGGGTGCCTTAAT+TGG | 0.213822 | 7.4:-3819942 | MS.gene000893:CDS |
| CCAGTAGTCTTGTTCCTTCA+TGG | 0.244564 | 7.4:-3820167 | MS.gene000893:CDS |
| TCTTTCTTGTTGCTCATGAT+TGG | 0.261993 | 7.4:-3819956 | MS.gene000893:CDS |
| GTCATAGGAACCAGGTAAAA+TGG | 0.282976 | 7.4:-3819652 | MS.gene000893:intron |
| CTTTCTTGTTGCTCATGATT+GGG | 0.285427 | 7.4:-3819955 | MS.gene000893:CDS |
| CGCCATGAGTACCAGAGTTC+GGG | 0.318900 | 7.4:+3820140 | None:intergenic |
| CCCATGACACCTTGCCCTCT+TGG | 0.319652 | 7.4:-3819512 | MS.gene000893:CDS |
| GAGGAAATGATTGTACAAAA+AGG | 0.323553 | 7.4:-3819161 | MS.gene000893:CDS |
| ACAAAGATACCAACCAATTA+AGG | 0.323697 | 7.4:+3819929 | None:intergenic |
| GTCTCTAAATTTGACAAAAC+AGG | 0.325042 | 7.4:-3819462 | MS.gene000893:CDS |
| AAAATGCATATAGCAGAAAA+AGG | 0.330788 | 7.4:-3820200 | MS.gene000893:CDS |
| ATCCTCACAACACGGAAAAT+TGG | 0.340437 | 7.4:-3819585 | MS.gene000893:CDS |
| ACAATCATTTCCTCTAAATT+CGG | 0.353038 | 7.4:+3819170 | None:intergenic |
| GGCAAGGTGTCATGGGTATC+CGG | 0.354008 | 7.4:+3819519 | None:intergenic |
| TACGTAGAAACCCAAATAAA+AGG | 0.378449 | 7.4:-3819854 | MS.gene000893:CDS |
| ATGGCACCGATTAGAACTTC+AGG | 0.384870 | 7.4:+3819075 | None:intergenic |
| GCTCCCGATCTCCGTGGCTT+TGG | 0.388680 | 7.4:-3820074 | MS.gene000893:CDS |
| GTGCCAGTGAAATTCATTAC+AGG | 0.390811 | 7.4:-3819266 | MS.gene000893:CDS |
| TTTGACAAAACAGGCTTCAC+TGG | 0.391236 | 7.4:-3819453 | MS.gene000893:CDS |
| CACAGAACAGTGGAAGTTAA+TGG | 0.407984 | 7.4:-3820227 | MS.gene000893:CDS |
| TACACAATCTTCCACTTAGT+TGG | 0.410078 | 7.4:-3820020 | MS.gene000893:CDS |
| GCGCCATGAGTACCAGAGTT+CGG | 0.415510 | 7.4:+3820139 | None:intergenic |
| CTGCTTCTTGATTATTAAAG+TGG | 0.416796 | 7.4:+3819132 | None:intergenic |
| TTTCTTTGTTTGCAGACTCT+GGG | 0.430512 | 7.4:-3819324 | MS.gene000893:intron |
| GGAAGATGTGCCGAATTTAG+AGG | 0.433588 | 7.4:-3819180 | MS.gene000893:CDS |
| CCAGTTCCGTACTCGCCGTT+GGG | 0.435012 | 7.4:+3819549 | None:intergenic |
| GTCTCCAAAGCCACGGAGAT+CGG | 0.447397 | 7.4:+3820070 | None:intergenic |
| CATTACAGGTGAGCTAGATA+TGG | 0.453391 | 7.4:-3819252 | MS.gene000893:CDS |
| TCTCCAAAGCCACGGAGATC+GGG | 0.455811 | 7.4:+3820071 | None:intergenic |
| GGGAACTGAGGGCCACAATC+TGG | 0.459581 | 7.4:+3820114 | None:intergenic |
| CCCAACGGCGAGTACGGAAC+TGG | 0.466545 | 7.4:-3819549 | MS.gene000893:CDS |
| TACTCGCCGTTGGGAAGTAT+TGG | 0.482139 | 7.4:+3819558 | None:intergenic |
| ATACTTCCCAACGGCGAGTA+CGG | 0.483099 | 7.4:-3819555 | MS.gene000893:CDS |
| GCCAAGAGGGCAAGGTGTCA+TGG | 0.489919 | 7.4:+3819511 | None:intergenic |
| GATCACTTGCGTGATGTGTA+TGG | 0.490923 | 7.4:-3819825 | MS.gene000893:CDS |
| TTCATGGCTTCCCCGAACTC+TGG | 0.493938 | 7.4:-3820151 | MS.gene000893:CDS |
| GCAAGGTGTCATGGGTATCC+GGG | 0.494992 | 7.4:+3819520 | None:intergenic |
| TTTCTTGTTGCTCATGATTG+GGG | 0.508757 | 7.4:-3819954 | MS.gene000893:CDS |
| ATTTGGGTTTCTACGTAGGA+AGG | 0.512776 | 7.4:+3819860 | None:intergenic |
| TCCCCGAACTCTGGTACTCA+TGG | 0.513767 | 7.4:-3820142 | MS.gene000893:CDS |
| TATACATGGAGGAGGAATGA+AGG | 0.514026 | 7.4:-3819201 | MS.gene000893:CDS |
| GAGCTCACAGCTCCATGGAC+CGG | 0.516623 | 7.4:-3819302 | MS.gene000893:CDS |
| GCCACGGAGATCGGGAGCTA+CGG | 0.522060 | 7.4:+3820079 | None:intergenic |
| ATTGGGGTGCCTTAATTGGT+TGG | 0.526960 | 7.4:-3819938 | MS.gene000893:CDS |
| TCCAGTTCCGTACTCGCCGT+TGG | 0.531974 | 7.4:+3819548 | None:intergenic |
| CCAAGAGGGCAAGGTGTCAT+GGG | 0.536197 | 7.4:+3819512 | None:intergenic |
| TTCTGTAAGCCAAGAGGGCA+AGG | 0.536914 | 7.4:+3819503 | None:intergenic |
| CTCATGGCGCCACCAGATTG+TGG | 0.538156 | 7.4:-3820126 | MS.gene000893:CDS |
| CAACGATATCACCAACTAAG+TGG | 0.540284 | 7.4:+3820009 | None:intergenic |
| GAGCTACGGCGTGGTAGCCG+AGG | 0.552775 | 7.4:+3820093 | None:intergenic |
| TCGCCGTTGGGAAGTATTGG+AGG | 0.556206 | 7.4:+3819561 | None:intergenic |
| GTGTAGTTGCTTATTGAAGT+GGG | 0.557721 | 7.4:+3820038 | None:intergenic |
| TCACCTGTAATGAATTTCAC+TGG | 0.565006 | 7.4:+3819263 | None:intergenic |
| AGAGTTCGGGGAAGCCATGA+AGG | 0.565421 | 7.4:+3820153 | None:intergenic |
| CCATGAAGGAACAAGACTAC+TGG | 0.567142 | 7.4:+3820167 | None:intergenic |
| TCTGGGAGCTCACAGCTCCA+TGG | 0.570609 | 7.4:-3819307 | MS.gene000893:CDS |
| TGATCCATGTCATAGGAACC+AGG | 0.570861 | 7.4:-3819660 | MS.gene000893:intron |
| TTTGGGTTTCTACGTAGGAA+GGG | 0.576884 | 7.4:+3819861 | None:intergenic |
| GGGACTACTAAGACAAACAT+AGG | 0.582812 | 7.4:+3819881 | None:intergenic |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.589343 | 7.4:+3819498 | None:intergenic |
| GAAGCTGAGATTGCTGAAGT+TGG | 0.590696 | 7.4:-3819630 | MS.gene000893:CDS |
| GGCATGAAGGAGTATATACA+TGG | 0.590893 | 7.4:-3819215 | MS.gene000893:CDS |
| TGTGTAGTTGCTTATTGAAG+TGG | 0.591667 | 7.4:+3820037 | None:intergenic |
| AAGGAGTATATACATGGAGG+AGG | 0.594079 | 7.4:-3819209 | MS.gene000893:CDS |
| GACAAAACAGGCTTCACTGG+AGG | 0.595419 | 7.4:-3819450 | MS.gene000893:CDS |
| AGCTACGGCGTGGTAGCCGA+GGG | 0.595559 | 7.4:+3820094 | None:intergenic |
| GATATGGTGTACACTTCGCT+AGG | 0.598016 | 7.4:-3819236 | MS.gene000893:CDS |
| ATTTAGAGACAAAGTAAGCA+AGG | 0.606314 | 7.4:+3819475 | None:intergenic |
| CGTGGTAGCCGAGGGAACTG+AGG | 0.611603 | 7.4:+3820102 | None:intergenic |
| GTGGTAGCCGAGGGAACTGA+GGG | 0.612520 | 7.4:+3820103 | None:intergenic |
| ATTGTGGCCCTCAGTTCCCT+CGG | 0.614475 | 7.4:-3820110 | MS.gene000893:CDS |
| AACTGAGGGCCACAATCTGG+TGG | 0.616466 | 7.4:+3820117 | None:intergenic |
| GTACACTTCGCTAGGCATGA+AGG | 0.627184 | 7.4:-3819228 | MS.gene000893:CDS |
| CATCACTGTCTCCAAAGCCA+CGG | 0.638680 | 7.4:+3820063 | None:intergenic |
| ATGGACCGGAGTGAAAACCT+TGG | 0.641351 | 7.4:-3819288 | MS.gene000893:CDS |
| GTTGCTCTCATAGACTCACT+TGG | 0.649822 | 7.4:-3819990 | MS.gene000893:CDS |
| AATGAATTTCACTGGCACCA+AGG | 0.651882 | 7.4:+3819271 | None:intergenic |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 7.4:+3819497 | None:intergenic |
| GGTCCTCCAATACTTCCCAA+CGG | 0.688968 | 7.4:-3819564 | MS.gene000893:CDS |
| GGAGATCGGGAGCTACGGCG+TGG | 0.695350 | 7.4:+3820084 | None:intergenic |
| GCCATGAGTACCAGAGTTCG+GGG | 0.700987 | 7.4:+3820141 | None:intergenic |
| AGGCATAGAACACAGAACAG+TGG | 0.709768 | 7.4:-3820237 | MS.gene000893:CDS |
| GCCGTAGCTCCCGATCTCCG+TGG | 0.712868 | 7.4:-3820080 | MS.gene000893:CDS |
| GTACGGAACTGGATTCAACC+CGG | 0.719164 | 7.4:-3819538 | MS.gene000893:CDS |
| ATGAAGGAGTATATACATGG+AGG | 0.728089 | 7.4:-3819212 | MS.gene000893:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACTTTAATGAATGAT+TGG | - | chr7.4:3819626-3819645 | MS.gene000893:CDS | 15.0% |
| !!! | GATAATCAAATTTTCATTTA+GGG | - | chr7.4:3819955-3819974 | MS.gene000893:CDS | 15.0% |
| !!! | GGATAATCAAATTTTCATTT+AGG | - | chr7.4:3819954-3819973 | MS.gene000893:CDS | 20.0% |
| !!! | TTTGAAATATGATCATATAG+AGG | + | chr7.4:3819573-3819592 | None:intergenic | 20.0% |
| ! | AAAATGCATATAGCAGAAAA+AGG | - | chr7.4:3819127-3819146 | MS.gene000893:CDS | 25.0% |
| ! | ACAATCATTTCCTCTAAATT+CGG | + | chr7.4:3820160-3820179 | None:intergenic | 25.0% |
| ! | ATGAAAATTTGATTATCCCA+AGG | + | chr7.4:3819952-3819971 | None:intergenic | 25.0% |
| !! | TGATCTATGATCCTTTTATT+TGG | + | chr7.4:3819487-3819506 | None:intergenic | 25.0% |
| !!! | GATCTATGATCCTTTTATTT+GGG | + | chr7.4:3819486-3819505 | None:intergenic | 25.0% |
| AAATATGATCATATAGAGGC+TGG | + | chr7.4:3819569-3819588 | None:intergenic | 30.0% | |
| AATGATTGTACAAAAAGGAG+TGG | - | chr7.4:3820171-3820190 | MS.gene000893:CDS | 30.0% | |
| ACAAAGATACCAACCAATTA+AGG | + | chr7.4:3819401-3819420 | None:intergenic | 30.0% | |
| ATAGCAGAAAAAGGAAAAGA+GGG | - | chr7.4:3819136-3819155 | MS.gene000893:CDS | 30.0% | |
| ATGATTGTACAAAAAGGAGT+GGG | - | chr7.4:3820172-3820191 | MS.gene000893:CDS | 30.0% | |
| ATTTAGAGACAAAGTAAGCA+AGG | + | chr7.4:3819855-3819874 | None:intergenic | 30.0% | |
| CTGCTTCTTGATTATTAAAG+TGG | + | chr7.4:3820198-3820217 | None:intergenic | 30.0% | |
| GAGGAAATGATTGTACAAAA+AGG | - | chr7.4:3820166-3820185 | MS.gene000893:CDS | 30.0% | |
| GTCTCTAAATTTGACAAAAC+AGG | - | chr7.4:3819865-3819884 | MS.gene000893:CDS | 30.0% | |
| TACGTAGAAACCCAAATAAA+AGG | - | chr7.4:3819473-3819492 | MS.gene000893:CDS | 30.0% | |
| TATAGCAGAAAAAGGAAAAG+AGG | - | chr7.4:3819135-3819154 | MS.gene000893:CDS | 30.0% | |
| TGAAAAATATCCTCACAACA+CGG | - | chr7.4:3819734-3819753 | MS.gene000893:intron | 30.0% | |
| !! | GATATTTTTCAGCACATAAG+CGG | + | chr7.4:3819725-3819744 | None:intergenic | 30.0% |
| !! | TTTTATTTGGGTTTCTACGT+AGG | + | chr7.4:3819474-3819493 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGATCCATGTCAT+AGG | - | chr7.4:3819660-3819679 | MS.gene000893:intron | 30.0% |
| CTACTATATCTGCAGATTTC+AGG | - | chr7.4:3819531-3819550 | MS.gene000893:CDS | 35.0% | |
| CTTTCTTGTTGCTCATGATT+GGG | - | chr7.4:3819372-3819391 | MS.gene000893:intron | 35.0% | |
| GTGTAGTTGCTTATTGAAGT+GGG | + | chr7.4:3819292-3819311 | None:intergenic | 35.0% | |
| TACACAATCTTCCACTTAGT+TGG | - | chr7.4:3819307-3819326 | MS.gene000893:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+TGG | + | chr7.4:3820067-3820086 | None:intergenic | 35.0% | |
| TCTTTCTTGTTGCTCATGAT+TGG | - | chr7.4:3819371-3819390 | MS.gene000893:intron | 35.0% | |
| TGTGTAGTTGCTTATTGAAG+TGG | + | chr7.4:3819293-3819312 | None:intergenic | 35.0% | |
| TTTCTTGTTGCTCATGATTG+GGG | - | chr7.4:3819373-3819392 | MS.gene000893:intron | 35.0% | |
| ! | ATGAAGGAGTATATACATGG+AGG | - | chr7.4:3820115-3820134 | MS.gene000893:CDS | 35.0% |
| ! | TTTCTTTGTTTGCAGACTCT+GGG | - | chr7.4:3820003-3820022 | MS.gene000893:CDS | 35.0% |
| AATGAATTTCACTGGCACCA+AGG | + | chr7.4:3820059-3820078 | None:intergenic | 40.0% | |
| ACAAACAATCAGAGAGCTAC+AGG | + | chr7.4:3819927-3819946 | None:intergenic | 40.0% | |
| ATCCTCACAACACGGAAAAT+TGG | - | chr7.4:3819742-3819761 | MS.gene000893:intron | 40.0% | |
| CAACGATATCACCAACTAAG+TGG | + | chr7.4:3819321-3819340 | None:intergenic | 40.0% | |
| CACAGAACAGTGGAAGTTAA+TGG | - | chr7.4:3819100-3819119 | MS.gene000893:CDS | 40.0% | |
| CATTACAGGTGAGCTAGATA+TGG | - | chr7.4:3820075-3820094 | MS.gene000893:CDS | 40.0% | |
| CTCTGATTGTTTGTCTCCTT+GGG | - | chr7.4:3819933-3819952 | MS.gene000893:CDS | 40.0% | |
| GGGACTACTAAGACAAACAT+AGG | + | chr7.4:3819449-3819468 | None:intergenic | 40.0% | |
| GTCATAGGAACCAGGTAAAA+TGG | - | chr7.4:3819675-3819694 | MS.gene000893:intron | 40.0% | |
| GTGCCAGTGAAATTCATTAC+AGG | - | chr7.4:3820061-3820080 | MS.gene000893:CDS | 40.0% | |
| TATACATGGAGGAGGAATGA+AGG | - | chr7.4:3820126-3820145 | MS.gene000893:CDS | 40.0% | |
| TCTCTGATTGTTTGTCTCCT+TGG | - | chr7.4:3819932-3819951 | MS.gene000893:CDS | 40.0% | |
| TTTACCTGGTTCCTATGACA+TGG | + | chr7.4:3819674-3819693 | None:intergenic | 40.0% | |
| TTTGACAAAACAGGCTTCAC+TGG | - | chr7.4:3819874-3819893 | MS.gene000893:CDS | 40.0% | |
| ! | AAGGAGTATATACATGGAGG+AGG | - | chr7.4:3820118-3820137 | MS.gene000893:CDS | 40.0% |
| ! | ACATAGGCTTTGACTCTTTC+AGG | + | chr7.4:3819433-3819452 | None:intergenic | 40.0% |
| ! | ATCTCAGCTTCCATTTTACC+TGG | + | chr7.4:3819688-3819707 | None:intergenic | 40.0% |
| ! | ATTTGGGTTTCTACGTAGGA+AGG | + | chr7.4:3819470-3819489 | None:intergenic | 40.0% |
| ! | GGCATGAAGGAGTATATACA+TGG | - | chr7.4:3820112-3820131 | MS.gene000893:CDS | 40.0% |
| ! | GTTTCTTTGTTTGCAGACTC+TGG | - | chr7.4:3820002-3820021 | MS.gene000893:CDS | 40.0% |
| ! | TTTGGGTTTCTACGTAGGAA+GGG | + | chr7.4:3819469-3819488 | None:intergenic | 40.0% |
| AGGCATAGAACACAGAACAG+TGG | - | chr7.4:3819090-3819109 | MS.gene000893:CDS | 45.0% | |
| CCATGAAGGAACAAGACTAC+TGG | + | chr7.4:3819163-3819182 | None:intergenic | 45.0% | |
| GAAGCTGAGATTGCTGAAGT+TGG | - | chr7.4:3819697-3819716 | MS.gene000893:intron | 45.0% | |
| GATATGGTGTACACTTCGCT+AGG | - | chr7.4:3820091-3820110 | MS.gene000893:CDS | 45.0% | |
| GATCACTTGCGTGATGTGTA+TGG | - | chr7.4:3819502-3819521 | MS.gene000893:CDS | 45.0% | |
| GGAAGATGTGCCGAATTTAG+AGG | - | chr7.4:3820147-3820166 | MS.gene000893:CDS | 45.0% | |
| GTTGCTCTCATAGACTCACT+TGG | - | chr7.4:3819337-3819356 | MS.gene000893:intron | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | + | chr7.4:3819832-3819851 | None:intergenic | 45.0% | |
| TGATCCATGTCATAGGAACC+AGG | - | chr7.4:3819667-3819686 | MS.gene000893:intron | 45.0% | |
| ! | ATTGGGGTGCCTTAATTGGT+TGG | - | chr7.4:3819389-3819408 | MS.gene000893:intron | 45.0% |
| ! | CATGATTGGGGTGCCTTAAT+TGG | - | chr7.4:3819385-3819404 | MS.gene000893:intron | 45.0% |
| ! | GACCAATTTTCCGTGTTGTG+AGG | + | chr7.4:3819747-3819766 | None:intergenic | 45.0% |
| !! | CCAGTAGTCTTGTTCCTTCA+TGG | - | chr7.4:3819160-3819179 | MS.gene000893:CDS | 45.0% |
| ATACTTCCCAACGGCGAGTA+CGG | - | chr7.4:3819772-3819791 | MS.gene000893:intron | 50.0% | |
| ATGGACCGGAGTGAAAACCT+TGG | - | chr7.4:3820039-3820058 | MS.gene000893:CDS | 50.0% | |
| CATCACTGTCTCCAAAGCCA+CGG | + | chr7.4:3819267-3819286 | None:intergenic | 50.0% | |
| GACAAAACAGGCTTCACTGG+AGG | - | chr7.4:3819877-3819896 | MS.gene000893:CDS | 50.0% | |
| GGTCCTCCAATACTTCCCAA+CGG | - | chr7.4:3819763-3819782 | MS.gene000893:intron | 50.0% | |
| GTACACTTCGCTAGGCATGA+AGG | - | chr7.4:3820099-3820118 | MS.gene000893:CDS | 50.0% | |
| GTACGGAACTGGATTCAACC+CGG | - | chr7.4:3819789-3819808 | MS.gene000893:intron | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | + | chr7.4:3819833-3819852 | None:intergenic | 50.0% | |
| TTCTGTAAGCCAAGAGGGCA+AGG | + | chr7.4:3819827-3819846 | None:intergenic | 50.0% | |
| ! | AAGGTTTTCACTCCGGTCCA+TGG | + | chr7.4:3820040-3820059 | None:intergenic | 50.0% |
| ! | TACTCGCCGTTGGGAAGTAT+TGG | + | chr7.4:3819772-3819791 | None:intergenic | 50.0% |
| ! | TGGCACCAAGGTTTTCACTC+CGG | + | chr7.4:3820047-3820066 | None:intergenic | 50.0% |
| AACTGAGGGCCACAATCTGG+TGG | + | chr7.4:3819213-3819232 | None:intergenic | 55.0% | |
| AGAGTTCGGGGAAGCCATGA+AGG | + | chr7.4:3819177-3819196 | None:intergenic | 55.0% | |
| ATTGTGGCCCTCAGTTCCCT+CGG | - | chr7.4:3819217-3819236 | MS.gene000893:CDS | 55.0% | |
| CGCCATGAGTACCAGAGTTC+GGG | + | chr7.4:3819190-3819209 | None:intergenic | 55.0% | |
| GCCATGAGTACCAGAGTTCG+GGG | + | chr7.4:3819189-3819208 | None:intergenic | 55.0% | |
| GCGCCATGAGTACCAGAGTT+CGG | + | chr7.4:3819191-3819210 | None:intergenic | 55.0% | |
| GTCTCCAAAGCCACGGAGAT+CGG | + | chr7.4:3819260-3819279 | None:intergenic | 55.0% | |
| TCCCCGAACTCTGGTACTCA+TGG | - | chr7.4:3819185-3819204 | MS.gene000893:CDS | 55.0% | |
| TCTCCAAAGCCACGGAGATC+GGG | + | chr7.4:3819259-3819278 | None:intergenic | 55.0% | |
| TTCATGGCTTCCCCGAACTC+TGG | - | chr7.4:3819176-3819195 | MS.gene000893:CDS | 55.0% | |
| ! | CCAAGAGGGCAAGGTGTCAT+GGG | + | chr7.4:3819818-3819837 | None:intergenic | 55.0% |
| ! | GCAAGGTGTCATGGGTATCC+GGG | + | chr7.4:3819810-3819829 | None:intergenic | 55.0% |
| ! | GGCAAGGTGTCATGGGTATC+CGG | + | chr7.4:3819811-3819830 | None:intergenic | 55.0% |
| !! | TCGCCGTTGGGAAGTATTGG+AGG | + | chr7.4:3819769-3819788 | None:intergenic | 55.0% |
| CCAGTTCCGTACTCGCCGTT+GGG | + | chr7.4:3819781-3819800 | None:intergenic | 60.0% | |
| CCCATGACACCTTGCCCTCT+TGG | - | chr7.4:3819815-3819834 | MS.gene000893:CDS | 60.0% | |
| CTCATGGCGCCACCAGATTG+TGG | - | chr7.4:3819201-3819220 | MS.gene000893:CDS | 60.0% | |
| GAGCTCACAGCTCCATGGAC+CGG | - | chr7.4:3820025-3820044 | MS.gene000893:CDS | 60.0% | |
| GGGAACTGAGGGCCACAATC+TGG | + | chr7.4:3819216-3819235 | None:intergenic | 60.0% | |
| GTGGTAGCCGAGGGAACTGA+GGG | + | chr7.4:3819227-3819246 | None:intergenic | 60.0% | |
| TCCAGTTCCGTACTCGCCGT+TGG | + | chr7.4:3819782-3819801 | None:intergenic | 60.0% | |
| TCTGGGAGCTCACAGCTCCA+TGG | - | chr7.4:3820020-3820039 | MS.gene000893:CDS | 60.0% | |
| ! | GCCAAGAGGGCAAGGTGTCA+TGG | + | chr7.4:3819819-3819838 | None:intergenic | 60.0% |
| AGCTACGGCGTGGTAGCCGA+GGG | + | chr7.4:3819236-3819255 | None:intergenic | 65.0% | |
| CCCAACGGCGAGTACGGAAC+TGG | - | chr7.4:3819778-3819797 | MS.gene000893:intron | 65.0% | |
| CGTGGTAGCCGAGGGAACTG+AGG | + | chr7.4:3819228-3819247 | None:intergenic | 65.0% | |
| GCCACGGAGATCGGGAGCTA+CGG | + | chr7.4:3819251-3819270 | None:intergenic | 65.0% | |
| GCTCCCGATCTCCGTGGCTT+TGG | - | chr7.4:3819253-3819272 | MS.gene000893:CDS | 65.0% | |
| GAGCTACGGCGTGGTAGCCG+AGG | + | chr7.4:3819237-3819256 | None:intergenic | 70.0% | |
| GCCGTAGCTCCCGATCTCCG+TGG | - | chr7.4:3819247-3819266 | MS.gene000893:CDS | 70.0% | |
| GGAGATCGGGAGCTACGGCG+TGG | + | chr7.4:3819246-3819265 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3819085 | 3820264 | 3819085 | ID=MS.gene000893 |
| chr7.4 | mRNA | 3819085 | 3820264 | 3819085 | ID=MS.gene000893.t1;Parent=MS.gene000893 |
| chr7.4 | exon | 3819797 | 3820264 | 3819797 | ID=MS.gene000893.t1.exon1;Parent=MS.gene000893.t1 |
| chr7.4 | CDS | 3819797 | 3820264 | 3819797 | ID=cds.MS.gene000893.t1;Parent=MS.gene000893.t1 |
| chr7.4 | exon | 3819423 | 3819667 | 3819423 | ID=MS.gene000893.t1.exon2;Parent=MS.gene000893.t1 |
| chr7.4 | CDS | 3819423 | 3819667 | 3819423 | ID=cds.MS.gene000893.t1;Parent=MS.gene000893.t1 |
| chr7.4 | exon | 3819085 | 3819331 | 3819085 | ID=MS.gene000893.t1.exon3;Parent=MS.gene000893.t1 |
| chr7.4 | CDS | 3819085 | 3819331 | 3819085 | ID=cds.MS.gene000893.t1;Parent=MS.gene000893.t1 |
| Gene Sequence |
| Protein sequence |
