Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001373.t1 | XP_013450482.1 | 81.9 | 337 | 41 | 3 | 1 | 335 | 1 | 319 | 1.80E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001373.t1 | I6YGS0 | 35.1 | 333 | 186 | 10 | 7 | 332 | 7 | 316 | 1.8e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001373.t1 | A0A072UFD9 | 81.9 | 337 | 41 | 3 | 1 | 335 | 1 | 319 | 1.3e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001373 | MS.gene071504 | PPI |
| MS.gene035367 | MS.gene001373 | PPI |
| MS.gene001373 | MS.gene066361 | PPI |
| MS.gene001373 | MS.gene071500 | PPI |
| MS.gene001373 | MS.gene041604 | PPI |
| MS.gene001373 | MS.gene77823 | PPI |
| MS.gene001373 | MS.gene025707 | PPI |
| MS.gene066360 | MS.gene001373 | PPI |
| MS.gene89620 | MS.gene001373 | PPI |
| MS.gene001373 | MS.gene22955 | PPI |
| MS.gene001373 | MS.gene035369 | PPI |
| MS.gene001373 | MS.gene76453 | PPI |
| MS.gene001373 | MS.gene035373 | PPI |
| MS.gene001373 | MS.gene07001 | PPI |
| MS.gene001373 | MS.gene012063 | PPI |
| MS.gene001373 | MS.gene035371 | PPI |
| MS.gene001373 | MS.gene071502 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001373.t1 | MTR_7g112963 | 81.953 | 338 | 39 | 3 | 1 | 335 | 1 | 319 | 0.0 | 538 |
| MS.gene001373.t1 | MTR_7g112960 | 78.932 | 337 | 51 | 4 | 1 | 335 | 1 | 319 | 0.0 | 523 |
| MS.gene001373.t1 | MTR_7g112970 | 76.855 | 337 | 55 | 3 | 1 | 335 | 1 | 316 | 0.0 | 511 |
| MS.gene001373.t1 | MTR_7g113020 | 70.326 | 337 | 80 | 3 | 1 | 335 | 1 | 319 | 1.20e-165 | 464 |
| MS.gene001373.t1 | MTR_7g113050 | 67.953 | 337 | 88 | 2 | 1 | 335 | 1 | 319 | 1.21e-160 | 451 |
| MS.gene001373.t1 | MTR_7g113030 | 67.062 | 337 | 91 | 2 | 1 | 335 | 1 | 319 | 2.71e-160 | 451 |
| MS.gene001373.t1 | MTR_7g112615 | 67.062 | 337 | 91 | 2 | 1 | 335 | 1 | 319 | 3.43e-159 | 448 |
| MS.gene001373.t1 | MTR_7g112620 | 67.062 | 337 | 91 | 2 | 1 | 335 | 1 | 319 | 2.09e-158 | 446 |
| MS.gene001373.t1 | MTR_7g113010 | 72.575 | 299 | 62 | 3 | 1 | 297 | 1 | 281 | 1.85e-150 | 436 |
| MS.gene001373.t1 | MTR_4g005160 | 58.309 | 343 | 114 | 6 | 1 | 335 | 1 | 322 | 1.01e-135 | 389 |
| MS.gene001373.t1 | MTR_4g120240 | 54.572 | 339 | 130 | 4 | 1 | 335 | 37 | 355 | 7.46e-124 | 360 |
| MS.gene001373.t1 | MTR_7g108825 | 54.599 | 337 | 131 | 3 | 1 | 335 | 1 | 317 | 1.22e-119 | 347 |
| MS.gene001373.t1 | MTR_7g113050 | 82.632 | 190 | 33 | 0 | 1 | 190 | 1 | 190 | 2.37e-114 | 331 |
| MS.gene001373.t1 | MTR_7g112615 | 81.579 | 190 | 35 | 0 | 1 | 190 | 1 | 190 | 3.54e-114 | 330 |
| MS.gene001373.t1 | MTR_7g112615 | 81.143 | 175 | 30 | 1 | 1 | 172 | 1 | 175 | 1.24e-100 | 294 |
| MS.gene001373.t1 | MTR_8g076680 | 41.543 | 337 | 173 | 6 | 1 | 335 | 3 | 317 | 5.72e-86 | 262 |
| MS.gene001373.t1 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 8.80e-85 | 254 |
| MS.gene001373.t1 | MTR_7g108825 | 61.780 | 191 | 72 | 1 | 1 | 191 | 1 | 190 | 1.75e-81 | 247 |
| MS.gene001373.t1 | MTR_8g076680 | 51.685 | 178 | 85 | 1 | 1 | 178 | 3 | 179 | 3.57e-67 | 211 |
| MS.gene001373.t1 | MTR_7g112910 | 43.939 | 264 | 79 | 6 | 72 | 335 | 1 | 195 | 4.84e-61 | 194 |
| MS.gene001373.t1 | MTR_3g024250 | 80.189 | 106 | 21 | 0 | 47 | 152 | 2 | 107 | 2.67e-55 | 177 |
| MS.gene001373.t1 | MTR_2g090240 | 30.838 | 334 | 207 | 6 | 1 | 334 | 1 | 310 | 2.63e-48 | 165 |
| MS.gene001373.t1 | MTR_2g090245 | 30.952 | 336 | 204 | 7 | 1 | 334 | 1 | 310 | 3.43e-48 | 164 |
| MS.gene001373.t1 | MTR_4g089040 | 29.661 | 354 | 184 | 7 | 1 | 334 | 1 | 309 | 7.65e-47 | 161 |
| MS.gene001373.t1 | MTR_4g089060 | 29.494 | 356 | 182 | 8 | 1 | 334 | 1 | 309 | 2.98e-45 | 157 |
| MS.gene001373.t1 | MTR_4g089060 | 40.107 | 187 | 105 | 2 | 1 | 185 | 1 | 182 | 3.92e-45 | 154 |
| MS.gene001373.t1 | MTR_4g089060 | 29.944 | 354 | 210 | 8 | 1 | 334 | 1 | 336 | 2.29e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001373.t1 | AT3G05600 | 55.718 | 341 | 126 | 6 | 1 | 334 | 1 | 323 | 3.60e-131 | 377 |
| MS.gene001373.t1 | AT4G02340 | 52.819 | 337 | 136 | 3 | 1 | 335 | 1 | 316 | 1.66e-123 | 358 |
| MS.gene001373.t1 | AT2G26740 | 51.917 | 339 | 138 | 5 | 4 | 335 | 1 | 321 | 5.49e-108 | 318 |
| MS.gene001373.t1 | AT4G15960 | 47.661 | 342 | 154 | 4 | 1 | 335 | 51 | 374 | 1.13e-107 | 319 |
| MS.gene001373.t1 | AT2G26750 | 50.148 | 337 | 146 | 6 | 4 | 335 | 1 | 320 | 1.12e-104 | 310 |
| MS.gene001373.t1 | AT3G05600 | 69.588 | 194 | 56 | 2 | 1 | 191 | 1 | 194 | 1.12e-98 | 291 |
| MS.gene001373.t1 | AT4G15955 | 45.322 | 342 | 135 | 6 | 4 | 335 | 5 | 304 | 2.14e-90 | 273 |
| MS.gene001373.t1 | AT3G51000 | 42.687 | 335 | 169 | 6 | 4 | 335 | 5 | 319 | 4.74e-85 | 259 |
| MS.gene001373.t1 | AT4G15955 | 59.195 | 174 | 61 | 2 | 4 | 167 | 5 | 178 | 1.47e-71 | 220 |
| MS.gene001373.t1 | AT4G15955 | 56.897 | 174 | 65 | 2 | 4 | 167 | 5 | 178 | 2.00e-67 | 209 |
Find 0 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAATTCTTAAAA+TGG | - | 51328:4425-4444 | MS.gene001373:intergenic | 10.0% |
| !! | AATTAAATCCTAAATTCATT+TGG | + | 51328:4484-4503 | MS.gene001373:intron | 15.0% |
| !!! | TTAGGATTTAATTTTATGTA+CGG | - | 51328:4477-4496 | MS.gene001373:intergenic | 15.0% |
| !!! | TTTTGAACTTGATAAATAAA+TGG | + | 51328:4531-4550 | MS.gene001373:intron | 15.0% |
| !! | ATGAGTTTAATCTAAACTTT+AGG | + | 51328:4508-4527 | MS.gene001373:intron | 20.0% |
| !! | TAATCAATAAGCTCAAATTA+CGG | - | 51328:4230-4249 | MS.gene001373:intergenic | 20.0% |
| !! | TATAAATTACAAGAGAATGA+TGG | - | 51328:5081-5100 | MS.gene001373:intergenic | 20.0% |
| !! | TTATAATAATTGCTGAGATA+AGG | + | 51328:5323-5342 | MS.gene001373:intron | 20.0% |
| !!! | AGACATTTTAAGTTTTTCTT+TGG | - | 51328:4287-4306 | MS.gene001373:intergenic | 20.0% |
| !!! | GTTATACACTAACTAAATTT+TGG | - | 51328:4595-4614 | MS.gene001373:intergenic | 20.0% |
| !!! | GTTTTATGTTAACAGAAATT+GGG | + | 51328:5591-5610 | MS.gene001373:CDS | 20.0% |
| !!! | TGTTTTATGTTAACAGAAAT+TGG | + | 51328:5590-5609 | MS.gene001373:CDS | 20.0% |
| !!! | TTAACATAAAACAAAAGCAT+TGG | - | 51328:5583-5602 | MS.gene001373:intergenic | 20.0% |
| !!! | TTTTAAAATCAAGGATTAAG+AGG | - | 51328:5281-5300 | MS.gene001373:intergenic | 20.0% |
| ! | AAAAATGAAAAATACGAACC+TGG | - | 51328:4020-4039 | MS.gene001373:intergenic | 25.0% |
| ! | AACTCATACCAAATGAATTT+AGG | - | 51328:4495-4514 | MS.gene001373:intergenic | 25.0% |
| ! | ACAATCTTAAATTTGATGGA+AGG | + | 51328:5501-5520 | MS.gene001373:intron | 25.0% |
| ! | ATTGGATTACAAATTTGACA+AGG | - | 51328:4571-4590 | MS.gene001373:intergenic | 25.0% |
| ! | ATTTATACAAAACCAATCCA+AGG | + | 51328:5094-5113 | MS.gene001373:CDS | 25.0% |
| ! | CAAAAACCAAAAGATAAAGT+GGG | - | 51328:4207-4226 | MS.gene001373:intergenic | 25.0% |
| ! | GATTAATTCTACTTGAACTA+TGG | + | 51328:4071-4090 | MS.gene001373:intron | 25.0% |
| ! | TCTGACAATCTTAAATTTGA+TGG | + | 51328:5497-5516 | MS.gene001373:intron | 25.0% |
| ! | TGGTTCAACAAATATCTATA+TGG | - | 51328:4405-4424 | MS.gene001373:intergenic | 25.0% |
| !! | CATCTAGTTAATTTGGAAAA+AGG | - | 51328:5050-5069 | MS.gene001373:intergenic | 25.0% |
| !! | TAAATCCTGTCTTTTCAATT+TGG | - | 51328:4966-4985 | MS.gene001373:intergenic | 25.0% |
| !! | TGAGCTTATTGATTATAAAG+TGG | + | 51328:4235-4254 | MS.gene001373:intron | 25.0% |
| !!! | AAGTTTTAGTTTTTTGCTTG+TGG | + | 51328:4123-4142 | MS.gene001373:intron | 25.0% |
| !!! | CACTAACTAAATTTTGGTAT+TGG | - | 51328:4589-4608 | MS.gene001373:intergenic | 25.0% |
| !!! | GATTTAGTTTACACTTCTTT+TGG | + | 51328:5679-5698 | MS.gene001373:CDS | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | + | 51328:3595-3614 | MS.gene001373:CDS | 30.0% | |
| ATGAGATAATATGCCTTCTT+TGG | - | 51328:4877-4896 | MS.gene001373:intergenic | 30.0% | |
| ATTGAAAAGACAGGATTTAG+TGG | + | 51328:4967-4986 | MS.gene001373:intron | 30.0% | |
| CAAGAGACATCTAGTTAATT+TGG | - | 51328:5057-5076 | MS.gene001373:intergenic | 30.0% | |
| CTTGATAAATAAATGGAGAC+TGG | + | 51328:4538-4557 | MS.gene001373:intron | 30.0% | |
| GAAGATTGTGTAACTACTAA+TGG | - | 51328:3767-3786 | MS.gene001373:intergenic | 30.0% | |
| GCAAAAACCAAAAGATAAAG+TGG | - | 51328:4208-4227 | MS.gene001373:intergenic | 30.0% | |
| TAGTTACACAATCTTCCATT+TGG | + | 51328:3771-3790 | MS.gene001373:CDS | 30.0% | |
| TGAGATAATATGCCTTCTTT+GGG | - | 51328:4876-4895 | MS.gene001373:intergenic | 30.0% | |
| TTATATCATGAGTGATGTGT+AGG | - | 51328:5383-5402 | MS.gene001373:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | + | 51328:3999-4018 | MS.gene001373:CDS | 30.0% | |
| ! | AGATTGTCAGATGATTTTGA+AGG | - | 51328:5488-5507 | MS.gene001373:intergenic | 30.0% |
| ! | TAAATAAGACTCTGAGAAGT+TGG | + | 51328:4681-4700 | MS.gene001373:intron | 30.0% |
| ! | TATTCACCCACTTTATCTTT+TGG | + | 51328:4198-4217 | MS.gene001373:intron | 30.0% |
| ! | TTTGGATTTCTGGGTAAATA+CGG | - | 51328:3937-3956 | MS.gene001373:intergenic | 30.0% |
| !! | AATGTGATTACTGATTTCCT+CGG | - | 51328:5809-5828 | MS.gene001373:intergenic | 30.0% |
| !!! | GTTTTTTGCTTGTGGTATAA+TGG | + | 51328:4131-4150 | MS.gene001373:intron | 30.0% |
| AATTATGCAACGCCAACTTA+AGG | - | 51328:5210-5229 | MS.gene001373:intergenic | 35.0% | |
| ACAAAGATACCAACCAATGA+TGG | - | 51328:3869-3888 | MS.gene001373:intergenic | 35.0% | |
| ATAACCACTTCCTCCAAATT+TGG | - | 51328:5748-5767 | MS.gene001373:intergenic | 35.0% | |
| ATGGAAGCTGAAATTGCTAA+AGG | + | 51328:4789-4808 | MS.gene001373:CDS | 35.0% | |
| ATGTACGGTGTATAATCAAG+AGG | - | 51328:4462-4481 | MS.gene001373:intergenic | 35.0% | |
| ATTATGCAACGCCAACTTAA+GGG | - | 51328:5209-5228 | MS.gene001373:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | 51328:3604-3623 | MS.gene001373:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | + | 51328:5732-5751 | MS.gene001373:CDS | 35.0% | |
| TACACAATCTTCCATTTGGT+GGG | + | 51328:3775-3794 | MS.gene001373:CDS | 35.0% | |
| TGCTTCCAAATTGAAAAGAC+AGG | + | 51328:4958-4977 | MS.gene001373:intron | 35.0% | |
| TGGACATCTGTAACTAACTT+GGG | + | 51328:5175-5194 | MS.gene001373:intron | 35.0% | |
| TGGCGTTGCATAATTCTATT+TGG | + | 51328:5215-5234 | MS.gene001373:intron | 35.0% | |
| TTACACAATCTTCCATTTGG+TGG | + | 51328:3774-3793 | MS.gene001373:CDS | 35.0% | |
| ! | AATTTCAGCTTCCATTTTCC+CGG | - | 51328:4784-4803 | MS.gene001373:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | 51328:3901-3920 | MS.gene001373:intergenic | 35.0% |
| ! | CAATTTGAAAGCATGTCTGA+CGG | - | 51328:5436-5455 | MS.gene001373:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | 51328:3900-3919 | MS.gene001373:intergenic | 35.0% |
| ! | TACCATTTTCTTCGGTTGTT+GGG | - | 51328:4635-4654 | MS.gene001373:intergenic | 35.0% |
| ! | TCAGCTAGTACCATTTTCTT+CGG | - | 51328:4643-4662 | MS.gene001373:intergenic | 35.0% |
| ! | TTTTGCTTGTGGTATAATGG+AGG | + | 51328:4134-4153 | MS.gene001373:intron | 35.0% |
| !! | AGGTTTCACTTTTGGATTTC+TGG | - | 51328:3947-3966 | MS.gene001373:intergenic | 35.0% |
| !! | ATTCTCGTATTGACTAACTG+TGG | + | 51328:5148-5167 | MS.gene001373:CDS | 35.0% |
| !! | GGTTTCACTTTTGGATTTCT+GGG | - | 51328:3946-3965 | MS.gene001373:intergenic | 35.0% |
| !! | TGGTACTTTAATTTGTGCTC+CGG | - | 51328:5635-5654 | MS.gene001373:intergenic | 35.0% |
| AACCCAACAACCGAAGAAAA+TGG | + | 51328:4630-4649 | MS.gene001373:intron | 40.0% | |
| ACCAAACAATACATCGAGAG+CGG | + | 51328:5703-5722 | MS.gene001373:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | 51328:3558-3577 | MS.gene001373:CDS | 40.0% | |
| AGGATTACGACTTGTAAGCA+TGG | - | 51328:4838-4857 | MS.gene001373:intergenic | 40.0% | |
| AGTGGTTATACAGAAAGGTG+TGG | + | 51328:5759-5778 | MS.gene001373:CDS | 40.0% | |
| ATAATATGCCTTCTTTGGGC+AGG | - | 51328:4872-4891 | MS.gene001373:intergenic | 40.0% | |
| ATGCTTACAAGTCGTAATCC+TGG | + | 51328:4837-4856 | MS.gene001373:CDS | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | + | 51328:3952-3971 | MS.gene001373:CDS | 40.0% | |
| CTTCCTTGTAGCTCATGATT+GGG | + | 51328:3840-3859 | MS.gene001373:CDS | 40.0% | |
| GAAAAGACAGGATTTAGTGG+TGG | + | 51328:4970-4989 | MS.gene001373:intron | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | + | 51328:5735-5754 | MS.gene001373:CDS | 40.0% | |
| GAAGTTCATCATAGGTGATC+TGG | + | 51328:5657-5676 | MS.gene001373:CDS | 40.0% | |
| GAGGAAGTGGTTATACAGAA+AGG | + | 51328:5754-5773 | MS.gene001373:CDS | 40.0% | |
| GTACCAGTGAAGTTCATCAT+AGG | + | 51328:5649-5668 | MS.gene001373:CDS | 40.0% | |
| GTGGACATCTGTAACTAACT+TGG | + | 51328:5174-5193 | MS.gene001373:intron | 40.0% | |
| GTGTAACTACTAATGGAAGC+TGG | - | 51328:3760-3779 | MS.gene001373:intergenic | 40.0% | |
| TAACAGAAATTGGGAGCTCA+CGG | + | 51328:5600-5619 | MS.gene001373:CDS | 40.0% | |
| TAGTCCAGAACTGTTGATCA+AGG | + | 51328:4812-4831 | MS.gene001373:CDS | 40.0% | |
| TCACCTATGATGAACTTCAC+TGG | - | 51328:5655-5674 | MS.gene001373:intergenic | 40.0% | |
| TCTTCCTTGTAGCTCATGAT+TGG | + | 51328:3839-3858 | MS.gene001373:CDS | 40.0% | |
| TGCTTACAAGTCGTAATCCT+GGG | + | 51328:4838-4857 | MS.gene001373:CDS | 40.0% | |
| TTCCTTGTAGCTCATGATTG+GGG | + | 51328:3841-3860 | MS.gene001373:CDS | 40.0% | |
| TTCGGTTGTTGGGTTTCAAT+TGG | - | 51328:4625-4644 | MS.gene001373:intergenic | 40.0% | |
| ! | ATTTCAGCTTCCATTTTCCC+GGG | - | 51328:4783-4802 | MS.gene001373:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | - | 51328:3955-3974 | MS.gene001373:intergenic | 40.0% |
| ! | GTACCATTTTCTTCGGTTGT+TGG | - | 51328:4636-4655 | MS.gene001373:intergenic | 40.0% |
| ! | TATTGACTAACTGTGGTGAG+TGG | + | 51328:5155-5174 | MS.gene001373:CDS | 40.0% |
| !! | TCACATGGATTGGAATTGGA+TGG | - | 51328:4754-4773 | MS.gene001373:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | + | 51328:3628-3647 | MS.gene001373:CDS | 40.0% |
| AAACAATACATCGAGAGCGG+TGG | + | 51328:5706-5725 | MS.gene001373:CDS | 45.0% | |
| ACCGCTCTCGATGTATTGTT+TGG | - | 51328:5707-5726 | MS.gene001373:intergenic | 45.0% | |
| ACTAATGGAAGCTGGAGCAT+CGG | - | 51328:3752-3771 | MS.gene001373:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | 51328:3568-3587 | MS.gene001373:CDS | 45.0% | |
| CATATTCTCCATGACCGAGA+GGG | - | 51328:5126-5145 | MS.gene001373:intergenic | 45.0% | |
| CCAATTCCAATCCATGTGAC+AGG | + | 51328:4755-4774 | MS.gene001373:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | - | 51328:3631-3650 | MS.gene001373:intergenic | 45.0% | |
| CGGAACACTGAGACAAACAT+AGG | - | 51328:3917-3936 | MS.gene001373:intergenic | 45.0% | |
| GGGTTGTTTGACCCTTAAGT+TGG | + | 51328:5195-5214 | MS.gene001373:intron | 45.0% | |
| TCATATTCTCCATGACCGAG+AGG | - | 51328:5127-5146 | MS.gene001373:intergenic | 45.0% | |
| TGTGCCAAATTTGGAGGAAG+TGG | + | 51328:5741-5760 | MS.gene001373:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | 51328:3653-3672 | MS.gene001373:CDS | 45.0% | |
| ! | ATGGCCTTGATCAACAGTTC+TGG | - | 51328:4819-4838 | MS.gene001373:intergenic | 45.0% |
| ! | GGGCATTGTACTTGAAACAC+TGG | - | 51328:4900-4919 | MS.gene001373:intergenic | 45.0% |
| !! | CCTGTCACATGGATTGGAAT+TGG | - | 51328:4758-4777 | MS.gene001373:intergenic | 45.0% |
| !! | TTGTAGGTATCGATGGTGGT+AGG | - | 51328:5412-5431 | MS.gene001373:intergenic | 45.0% |
| !!! | ATTAATTATTTTTAAAATCA+AGG | - | 51328:5290-5309 | MS.gene001373:intergenic | 5.0% |
| !!! | TTGATTTTAAAAATAATTAA+TGG | + | 51328:5289-5308 | MS.gene001373:intron | 5.0% |
| AAGCATGTCTGACGGCTTGT+AGG | - | 51328:5428-5447 | MS.gene001373:intergenic | 50.0% | |
| AATCCATGTGACAGGAACCC+GGG | + | 51328:4763-4782 | MS.gene001373:intron | 50.0% | |
| ACAGCTCGCATTCCATCAAC+AGG | - | 51328:3967-3986 | MS.gene001373:intergenic | 50.0% | |
| AGAGGGTTGGAACCTTGGAT+TGG | - | 51328:5109-5128 | MS.gene001373:intergenic | 50.0% | |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | 51328:3645-3664 | MS.gene001373:intergenic | 50.0% | |
| AGCAACAGCACAGTAACCGA+GGG | - | 51328:3704-3723 | MS.gene001373:intergenic | 50.0% | |
| AGTGATGTGTAGGCTCACGA+AGG | - | 51328:5373-5392 | MS.gene001373:intergenic | 50.0% | |
| ATCCAAGGTTCCAACCCTCT+CGG | + | 51328:5109-5128 | MS.gene001373:CDS | 50.0% | |
| ATGCCTTCTTTGGGCAGGAT+TGG | - | 51328:4867-4886 | MS.gene001373:intergenic | 50.0% | |
| CAACGATGTCACCCACCAAA+TGG | - | 51328:3789-3808 | MS.gene001373:intergenic | 50.0% | |
| CAATCCATGTGACAGGAACC+CGG | + | 51328:4762-4781 | MS.gene001373:intron | 50.0% | |
| CACCCCAATCATGAGCTACA+AGG | - | 51328:3846-3865 | MS.gene001373:intergenic | 50.0% | |
| GATGGAATGCGAGCTGTGTA+TGG | + | 51328:3970-3989 | MS.gene001373:CDS | 50.0% | |
| TGATTTCCTCGGCAGCTTCT+TGG | - | 51328:5798-5817 | MS.gene001373:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | 51328:3644-3663 | MS.gene001373:CDS | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | + | 51328:3857-3876 | MS.gene001373:CDS | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | + | 51328:3853-3872 | MS.gene001373:CDS | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | + | 51328:3805-3824 | MS.gene001373:CDS | 50.0% |
| !! | TGACGGCTTGTAGGTATCGA+TGG | - | 51328:5419-5438 | MS.gene001373:intergenic | 50.0% |
| AGCCAAGAGCAGCAATCTGG+TGG | - | 51328:3681-3700 | MS.gene001373:intergenic | 55.0% | |
| ATTGCTGCTCTTGGCTCCCT+CGG | + | 51328:3685-3704 | MS.gene001373:CDS | 55.0% | |
| CAACAACCAAGAAGCTGCCG+AGG | + | 51328:5789-5808 | MS.gene001373:CDS | 55.0% | |
| CCACCAATCCTGCCCAAAGA+AGG | + | 51328:4861-4880 | MS.gene001373:CDS | 55.0% | |
| CCTTCTTTGGGCAGGATTGG+TGG | - | 51328:4864-4883 | MS.gene001373:intergenic | 55.0% | |
| CGGGTTCCTGTCACATGGAT+TGG | - | 51328:4764-4783 | MS.gene001373:intergenic | 55.0% | |
| CTTCTTGCGAGAGCCAGGAA+GGG | - | 51328:4925-4944 | MS.gene001373:intergenic | 55.0% | |
| GACATCTTCTTGCGAGAGCC+AGG | - | 51328:4930-4949 | MS.gene001373:intergenic | 55.0% | |
| GAGCAACAGCACAGTAACCG+AGG | - | 51328:3705-3724 | MS.gene001373:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGTTA+CGG | + | 51328:3721-3740 | MS.gene001373:CDS | 55.0% | |
| GTGACAGGAACCCGGGAAAA+TGG | + | 51328:4770-4789 | MS.gene001373:intron | 55.0% | |
| TCTTCTTGCGAGAGCCAGGA+AGG | - | 51328:4926-4945 | MS.gene001373:intergenic | 55.0% | |
| TTCTCCATGACCGAGAGGGT+TGG | - | 51328:5122-5141 | MS.gene001373:intergenic | 55.0% | |
| TTTCCCGGGTTCCTGTCACA+TGG | - | 51328:4769-4788 | MS.gene001373:intergenic | 55.0% | |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | 51328:3658-3677 | MS.gene001373:intergenic | 55.0% |
| !! | CGGCTTGTAGGTATCGATGG+TGG | - | 51328:5416-5435 | MS.gene001373:intergenic | 55.0% |
| ATTGGGAGCTCACGGCAGCA+TGG | + | 51328:5608-5627 | MS.gene001373:CDS | 60.0% | |
| CGCCACCAGATTGCTGCTCT+TGG | + | 51328:3676-3695 | MS.gene001373:CDS | 60.0% | |
| GACCGAGAGGGTTGGAACCT+TGG | - | 51328:5114-5133 | MS.gene001373:intergenic | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | + | 51328:3715-3734 | MS.gene001373:CDS | 60.0% | |
| GGGAGCCAAGAGCAGCAATC+TGG | - | 51328:3684-3703 | MS.gene001373:intergenic | 60.0% | |
| GGTTCCAACCCTCTCGGTCA+TGG | + | 51328:5115-5134 | MS.gene001373:CDS | 60.0% | |
| GTACAATGCCCCTCCCTTCC+TGG | + | 51328:4909-4928 | MS.gene001373:intron | 60.0% | |
| TCGCCGTAACCACGGAGATC+TGG | - | 51328:3727-3746 | MS.gene001373:intergenic | 60.0% | |
| TTGCGAGAGCCAGGAAGGGA+GGG | - | 51328:4921-4940 | MS.gene001373:intergenic | 60.0% | |
| !! | CATCGGTGTCGCCGTAACCA+CGG | - | 51328:3735-3754 | MS.gene001373:intergenic | 60.0% |
| CTTGCGAGAGCCAGGAAGGG+AGG | - | 51328:4922-4941 | MS.gene001373:intergenic | 65.0% | |
| GAGCTCACGGCAGCATGGAC+CGG | + | 51328:5613-5632 | MS.gene001373:CDS | 65.0% | |
| TGCGAGAGCCAGGAAGGGAG+GGG | - | 51328:4920-4939 | MS.gene001373:intergenic | 65.0% | |
| ! | TTGGGCAGGATTGGTGGCCC+AGG | - | 51328:4858-4877 | MS.gene001373:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51328 | gene | 3553 | 5852 | 3553 | ID=MS.gene001373 |
| 51328 | mRNA | 3553 | 5852 | 3553 | ID=MS.gene001373.t1;Parent=MS.gene001373 |
| 51328 | exon | 3553 | 4020 | 3553 | ID=MS.gene001373.t1.exon1;Parent=MS.gene001373.t1 |
| 51328 | CDS | 3553 | 4020 | 3553 | ID=cds.MS.gene001373.t1;Parent=MS.gene001373.t1 |
| 51328 | exon | 4777 | 4908 | 4777 | ID=MS.gene001373.t1.exon2;Parent=MS.gene001373.t1 |
| 51328 | CDS | 4777 | 4908 | 4777 | ID=cds.MS.gene001373.t1;Parent=MS.gene001373.t1 |
| 51328 | exon | 5008 | 5019 | 5008 | ID=MS.gene001373.t1.exon3;Parent=MS.gene001373.t1 |
| 51328 | CDS | 5008 | 5019 | 5008 | ID=cds.MS.gene001373.t1;Parent=MS.gene001373.t1 |
| 51328 | exon | 5067 | 5183 | 5067 | ID=MS.gene001373.t1.exon4;Parent=MS.gene001373.t1 |
| 51328 | CDS | 5067 | 5183 | 5067 | ID=cds.MS.gene001373.t1;Parent=MS.gene001373.t1 |
| 51328 | exon | 5574 | 5852 | 5574 | ID=MS.gene001373.t1.exon5;Parent=MS.gene001373.t1 |
| 51328 | CDS | 5574 | 5852 | 5574 | ID=cds.MS.gene001373.t1;Parent=MS.gene001373.t1 |
| Gene Sequence |
| Protein sequence |
