Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001374.t1 | XP_003626240.2 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 1.50E-184 | 655.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001374.t1 | I6YGS0 | 38.4 | 320 | 177 | 8 | 7 | 316 | 7 | 316 | 1.1e-58 | 228.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001374.t1 | G7KXL9 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 1.1e-184 | 655.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene035373 | MS.gene001374 | PPI |
MS.gene035367 | MS.gene001374 | PPI |
MS.gene001374 | MS.gene22955 | PPI |
MS.gene001374 | MS.gene071500 | PPI |
MS.gene77823 | MS.gene001374 | PPI |
MS.gene001374 | MS.gene041604 | PPI |
MS.gene071504 | MS.gene001374 | PPI |
MS.gene012063 | MS.gene001374 | PPI |
MS.gene071502 | MS.gene001374 | PPI |
MS.gene066360 | MS.gene001374 | PPI |
MS.gene89620 | MS.gene001374 | PPI |
MS.gene035369 | MS.gene001374 | PPI |
MS.gene001374 | MS.gene07001 | PPI |
MS.gene76453 | MS.gene001374 | PPI |
MS.gene025707 | MS.gene001374 | PPI |
MS.gene001374 | MS.gene066361 | PPI |
MS.gene001374 | MS.gene035371 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001374.t1 | MTR_7g112960 | 97.179 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 0.0 | 650 |
MS.gene001374.t1 | MTR_7g112963 | 88.088 | 319 | 38 | 0 | 1 | 319 | 1 | 319 | 0.0 | 596 |
MS.gene001374.t1 | MTR_7g112970 | 88.401 | 319 | 34 | 1 | 1 | 319 | 1 | 316 | 0.0 | 588 |
MS.gene001374.t1 | MTR_7g113020 | 78.997 | 319 | 67 | 0 | 1 | 319 | 1 | 319 | 0.0 | 538 |
MS.gene001374.t1 | MTR_7g113050 | 78.505 | 321 | 65 | 2 | 1 | 319 | 1 | 319 | 0.0 | 529 |
MS.gene001374.t1 | MTR_7g113030 | 77.429 | 319 | 72 | 0 | 1 | 319 | 1 | 319 | 0.0 | 528 |
MS.gene001374.t1 | MTR_7g113010 | 87.189 | 281 | 36 | 0 | 1 | 281 | 1 | 281 | 0.0 | 527 |
MS.gene001374.t1 | MTR_7g112620 | 75.862 | 319 | 77 | 0 | 1 | 319 | 1 | 319 | 0.0 | 521 |
MS.gene001374.t1 | MTR_7g112615 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
MS.gene001374.t1 | MTR_4g005160 | 68.731 | 323 | 96 | 3 | 1 | 319 | 1 | 322 | 6.24e-166 | 464 |
MS.gene001374.t1 | MTR_4g120240 | 62.617 | 321 | 116 | 3 | 1 | 319 | 37 | 355 | 3.09e-148 | 421 |
MS.gene001374.t1 | MTR_7g108825 | 62.112 | 322 | 114 | 3 | 1 | 319 | 1 | 317 | 1.43e-146 | 415 |
MS.gene001374.t1 | MTR_7g113050 | 77.917 | 240 | 49 | 2 | 1 | 238 | 1 | 238 | 3.95e-139 | 393 |
MS.gene001374.t1 | MTR_7g112615 | 75.630 | 238 | 58 | 0 | 1 | 238 | 1 | 238 | 8.72e-137 | 387 |
MS.gene001374.t1 | MTR_8g076680 | 47.678 | 323 | 157 | 5 | 1 | 319 | 3 | 317 | 1.84e-109 | 321 |
MS.gene001374.t1 | MTR_7g108825 | 60.996 | 241 | 86 | 3 | 1 | 238 | 1 | 236 | 4.68e-104 | 304 |
MS.gene001374.t1 | MTR_7g112615 | 80.571 | 175 | 31 | 1 | 1 | 172 | 1 | 175 | 1.17e-102 | 298 |
MS.gene001374.t1 | MTR_1g083480 | 76.730 | 159 | 33 | 2 | 1 | 156 | 1 | 158 | 3.91e-88 | 261 |
MS.gene001374.t1 | MTR_8g076680 | 47.107 | 242 | 118 | 3 | 1 | 238 | 3 | 238 | 1.91e-83 | 252 |
MS.gene001374.t1 | MTR_7g112910 | 50.199 | 251 | 66 | 7 | 72 | 319 | 1 | 195 | 5.43e-71 | 219 |
MS.gene001374.t1 | MTR_2g090240 | 37.188 | 320 | 189 | 6 | 1 | 318 | 1 | 310 | 3.68e-67 | 213 |
MS.gene001374.t1 | MTR_2g090245 | 36.562 | 320 | 191 | 7 | 1 | 318 | 1 | 310 | 1.35e-65 | 209 |
MS.gene001374.t1 | MTR_4g089060 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 4.46e-65 | 207 |
MS.gene001374.t1 | MTR_4g089040 | 36.250 | 320 | 191 | 6 | 1 | 318 | 1 | 309 | 1.49e-64 | 206 |
MS.gene001374.t1 | MTR_4g089060 | 33.333 | 348 | 190 | 7 | 1 | 318 | 1 | 336 | 4.39e-60 | 196 |
MS.gene001374.t1 | MTR_3g024250 | 79.245 | 106 | 22 | 0 | 47 | 152 | 2 | 107 | 2.43e-56 | 179 |
MS.gene001374.t1 | MTR_4g089060 | 37.339 | 233 | 137 | 3 | 1 | 231 | 1 | 226 | 2.24e-54 | 177 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001374.t1 | AT3G05600 | 63.692 | 325 | 111 | 4 | 1 | 319 | 1 | 324 | 1.69e-158 | 446 |
MS.gene001374.t1 | AT4G02340 | 59.317 | 322 | 122 | 3 | 1 | 319 | 1 | 316 | 3.23e-146 | 414 |
MS.gene001374.t1 | AT4G15960 | 55.077 | 325 | 139 | 3 | 1 | 319 | 51 | 374 | 2.74e-131 | 379 |
MS.gene001374.t1 | AT2G26740 | 58.385 | 322 | 127 | 4 | 4 | 319 | 1 | 321 | 1.26e-126 | 365 |
MS.gene001374.t1 | AT2G26750 | 56.075 | 321 | 135 | 4 | 4 | 319 | 1 | 320 | 2.93e-121 | 351 |
MS.gene001374.t1 | AT3G05600 | 65.164 | 244 | 78 | 4 | 1 | 238 | 1 | 243 | 5.26e-119 | 342 |
MS.gene001374.t1 | AT4G15955 | 50.462 | 325 | 125 | 4 | 5 | 319 | 6 | 304 | 3.76e-112 | 327 |
MS.gene001374.t1 | AT3G51000 | 49.686 | 318 | 155 | 5 | 4 | 319 | 5 | 319 | 1.71e-108 | 319 |
MS.gene001374.t1 | AT4G15955 | 61.272 | 173 | 57 | 2 | 5 | 167 | 6 | 178 | 1.51e-74 | 227 |
MS.gene001374.t1 | AT4G15955 | 60.606 | 165 | 55 | 2 | 5 | 159 | 6 | 170 | 1.63e-69 | 214 |
Find 0 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAACCAAAAAG+AGG | - | 51328:7947-7966 | MS.gene001374:intergenic | 15.0% |
!! | AACAATATAATGGTTATAAT+TGG | + | 51328:8048-8067 | MS.gene001374:intron | 15.0% |
!! | ATCATCTATTTCAAATAAAT+GGG | - | 51328:9752-9771 | MS.gene001374:intergenic | 15.0% |
!! | TATCATCTATTTCAAATAAA+TGG | - | 51328:9753-9772 | MS.gene001374:intergenic | 15.0% |
!! | TTGAAGTTTATATAATTGTT+GGG | - | 51328:8972-8991 | MS.gene001374:intergenic | 15.0% |
!!! | AAAATGTTAGATTTTTAACT+TGG | + | 51328:9825-9844 | MS.gene001374:intron | 15.0% |
!!! | AGATAGATCAAAAATTTTAA+TGG | - | 51328:9428-9447 | MS.gene001374:intergenic | 15.0% |
!!! | AGTATATTGTTTGATTTTAA+TGG | + | 51328:8090-8109 | MS.gene001374:intron | 15.0% |
!!! | ATTTATTTGAAATAGATGAT+AGG | + | 51328:9752-9771 | MS.gene001374:intron | 15.0% |
!!! | GTATATTGTTTGATTTTAAT+GGG | + | 51328:8091-8110 | MS.gene001374:intron | 15.0% |
!!! | TAAATTCCACAAATTTTTAA+AGG | - | 51328:10087-10106 | MS.gene001374:intergenic | 15.0% |
!!! | TATATTGTTTGATTTTAATG+GGG | + | 51328:8092-8111 | MS.gene001374:intron | 15.0% |
!! | AAATGTGATATCAAAATTCA+AGG | - | 51328:10983-11002 | MS.gene001374:intergenic | 20.0% |
!! | AGTAGTACAAAAATGAATTT+AGG | + | 51328:8467-8486 | MS.gene001374:intron | 20.0% |
!! | CAACAATTATATAAACTTCA+AGG | + | 51328:8971-8990 | MS.gene001374:intron | 20.0% |
!! | CAATAAAAGAAATTCAAAAG+AGG | - | 51328:8548-8567 | MS.gene001374:intergenic | 20.0% |
!! | CATTCAATCAAACAATATAA+TGG | + | 51328:8038-8057 | MS.gene001374:intron | 20.0% |
!! | CTATTAACAAATACAACATT+TGG | - | 51328:11109-11128 | MS.gene001374:intergenic | 20.0% |
!! | CTTGAAGTTTATATAATTGT+TGG | - | 51328:8973-8992 | MS.gene001374:intergenic | 20.0% |
!! | GTATCATATATACAGAAATT+GGG | + | 51328:11145-11164 | MS.gene001374:intron | 20.0% |
!! | TCATCTATTTCAAATAAATG+GGG | - | 51328:9751-9770 | MS.gene001374:intergenic | 20.0% |
!! | TGTATCATATATACAGAAAT+TGG | + | 51328:11144-11163 | MS.gene001374:intron | 20.0% |
!!! | ATTAATAAACTTTTTAGAGC+AGG | - | 51328:8640-8659 | MS.gene001374:intergenic | 20.0% |
!!! | TTTCAAATGTTTTTTTTGAG+TGG | - | 51328:9333-9352 | MS.gene001374:intergenic | 20.0% |
! | AAATGGTTCAATTGGTTAAA+AGG | - | 51328:9454-9473 | MS.gene001374:intergenic | 25.0% |
! | AAGCAATAATTACAAGTAGT+TGG | - | 51328:9557-9576 | MS.gene001374:intergenic | 25.0% |
! | AATTTAGTTAGTCAAGAAGA+GGG | - | 51328:10759-10778 | MS.gene001374:intergenic | 25.0% |
! | AGAACAAAAAATGGTTCAAT+TGG | - | 51328:9462-9481 | MS.gene001374:intergenic | 25.0% |
! | AGCAATAATTACAAGTAGTT+GGG | - | 51328:9556-9575 | MS.gene001374:intergenic | 25.0% |
! | AGTACAAAAATGAATTTAGG+TGG | + | 51328:8470-8489 | MS.gene001374:intron | 25.0% |
! | ATCAGTGTTACATTTAATTC+AGG | + | 51328:9201-9220 | MS.gene001374:intron | 25.0% |
! | ATTAGGATTTACTAGGAATT+AGG | + | 51328:9494-9513 | MS.gene001374:intron | 25.0% |
! | GAGATTTCTATAGTAGTTAA+GGG | - | 51328:10621-10640 | MS.gene001374:intergenic | 25.0% |
! | GTGATAGAAATACCAATATT+AGG | + | 51328:8864-8883 | MS.gene001374:intron | 25.0% |
! | TAATTAGTGTCTAAACTGAA+AGG | - | 51328:7970-7989 | MS.gene001374:intergenic | 25.0% |
! | TATCATGTCAGATTCTATTA+AGG | - | 51328:8826-8845 | MS.gene001374:intergenic | 25.0% |
! | TCAGTGTTACATTTAATTCA+GGG | + | 51328:9202-9221 | MS.gene001374:intron | 25.0% |
! | TGAGATTTCTATAGTAGTTA+AGG | - | 51328:10622-10641 | MS.gene001374:intergenic | 25.0% |
! | TGTTGAAATGGAGATAAAAT+TGG | + | 51328:8513-8532 | MS.gene001374:intron | 25.0% |
! | TTCAGTTTAGACACTAATTA+GGG | + | 51328:7970-7989 | MS.gene001374:intron | 25.0% |
! | TTTCAGTTTAGACACTAATT+AGG | + | 51328:7969-7988 | MS.gene001374:intron | 25.0% |
!! | AAACTAGAGAAATAGGATTT+TGG | - | 51328:9583-9602 | MS.gene001374:intergenic | 25.0% |
!! | AAGCATTTGCAAATTTTACA+AGG | - | 51328:9877-9896 | MS.gene001374:intergenic | 25.0% |
!! | AATTTTATCTCCATTTCAAC+AGG | - | 51328:8514-8533 | MS.gene001374:intergenic | 25.0% |
!! | ATTTTATCTCCATTTCAACA+GGG | - | 51328:8513-8532 | MS.gene001374:intergenic | 25.0% |
!! | GATTACGAAACTAATTTTCT+TGG | - | 51328:9130-9149 | MS.gene001374:intergenic | 25.0% |
!! | GTTTTTCATCGTAATAGATT+AGG | - | 51328:8801-8820 | MS.gene001374:intergenic | 25.0% |
!!! | AAAAATTGGTTTTAACCCTT+AGG | + | 51328:10121-10140 | MS.gene001374:intron | 25.0% |
!!! | AAATTTTTAAAGGACACACA+TGG | - | 51328:10077-10096 | MS.gene001374:intergenic | 25.0% |
!!! | ACAATTTAAGTTAGGGTTTT+AGG | - | 51328:10865-10884 | MS.gene001374:intergenic | 25.0% |
!!! | GGTTGTTTTGCTTATAATAT+TGG | - | 51328:9109-9128 | MS.gene001374:intergenic | 25.0% |
!!! | GTCATTTTTCCAAATTAACT+AGG | + | 51328:10655-10674 | MS.gene001374:intron | 25.0% |
!!! | TTGTGTTTGTTTTCCAAAAA+TGG | + | 51328:9614-9633 | MS.gene001374:intron | 25.0% |
AAAAAACCAAAAAGAGGAAG+AGG | - | 51328:7941-7960 | MS.gene001373:intergenic | 30.0% | |
AAAAACCAAAAAGAGGAAGA+GGG | - | 51328:7940-7959 | MS.gene001373:intergenic | 30.0% | |
AAAATGCATATTGCTGAGAA+AGG | + | 51328:7305-7324 | MS.gene001374:CDS | 30.0% | |
AAAGTTATGGCATCTCAATT+AGG | + | 51328:8582-8601 | MS.gene001374:intron | 30.0% | |
AAGTCAAAAGAGCAGTTAAA+AGG | - | 51328:7914-7933 | MS.gene001374:intergenic | 30.0% | |
AATAATGCAAGCAGAAATAG+TGG | - | 51328:7791-7810 | MS.gene001374:intergenic | 30.0% | |
AGAATATAAGAAAACGAACC+TGG | - | 51328:7730-7749 | MS.gene001374:intergenic | 30.0% | |
AGAGAATATCCAATTTGGTA+TGG | + | 51328:9794-9813 | MS.gene001374:intron | 30.0% | |
AGTAACTTAGACAGATTCAA+AGG | - | 51328:7819-7838 | MS.gene001374:intergenic | 30.0% | |
ATAACAACTTCCTCCAAATT+TGG | - | 51328:11302-11321 | MS.gene001374:intergenic | 30.0% | |
ATGCTTACAAATAGGAATTC+TGG | + | 51328:10461-10480 | MS.gene001374:CDS | 30.0% | |
ATGCTTATGAATAATCACGA+TGG | + | 51328:9891-9910 | MS.gene001374:intron | 30.0% | |
CAAATAGAAATACAAGTGCA+GGG | - | 51328:10904-10923 | MS.gene001374:intergenic | 30.0% | |
CAATTTAGTTAGTCAAGAAG+AGG | - | 51328:10760-10779 | MS.gene001374:intergenic | 30.0% | |
CATTTAATTCAGGGATAAGT+CGG | + | 51328:9211-9230 | MS.gene001374:intron | 30.0% | |
CGTCTTAATCTCTTTACTTT+GGG | + | 51328:8273-8292 | MS.gene001374:intron | 30.0% | |
CTCTTCTTGACTAACTAAAT+TGG | + | 51328:10758-10777 | MS.gene001374:intron | 30.0% | |
CTTAGGAATTAGGATTTACT+AGG | + | 51328:9487-9506 | MS.gene001374:intron | 30.0% | |
GAAATACCAATATTAGGAGT+AGG | + | 51328:8870-8889 | MS.gene001374:intron | 30.0% | |
GAGAATATCCAATTTGGTAT+GGG | + | 51328:9795-9814 | MS.gene001374:intron | 30.0% | |
GATTCAGAGAATATCCAATT+TGG | + | 51328:9789-9808 | MS.gene001374:intron | 30.0% | |
GCAATAGATTGCAAAAGTTA+TGG | + | 51328:8569-8588 | MS.gene001374:intron | 30.0% | |
GCTTCTAAATTTGAAAAGAC+AGG | + | 51328:10584-10603 | MS.gene001374:CDS | 30.0% | |
GTAACTTAGACAGATTCAAA+GGG | - | 51328:7818-7837 | MS.gene001374:intergenic | 30.0% | |
TAACTTAGACAGATTCAAAG+GGG | - | 51328:7817-7836 | MS.gene001374:intergenic | 30.0% | |
TAAGAAAGATGTGCCAAATT+TGG | + | 51328:11286-11305 | MS.gene001374:CDS | 30.0% | |
TAAGTGTGCAGAACAAAAAA+TGG | - | 51328:9471-9490 | MS.gene001374:intergenic | 30.0% | |
TAATTGTTGGGAAAACTGTT+TGG | - | 51328:8960-8979 | MS.gene001374:intergenic | 30.0% | |
TACACATAAGGAAATTGTTG+TGG | - | 51328:8900-8919 | MS.gene001374:intergenic | 30.0% | |
TCAAATAGAAATACAAGTGC+AGG | - | 51328:10905-10924 | MS.gene001374:intergenic | 30.0% | |
TCAAGAACATGCTTACAAAT+AGG | + | 51328:10453-10472 | MS.gene001374:CDS | 30.0% | |
TCGTCTTAATCTCTTTACTT+TGG | + | 51328:8272-8291 | MS.gene001374:intron | 30.0% | |
TCTCTTATGCATACAAACAA+CGG | + | 51328:8308-8327 | MS.gene001374:intron | 30.0% | |
TGATTAAACCCATACCAAAT+TGG | - | 51328:9806-9825 | MS.gene001374:intergenic | 30.0% | |
TGCTTACAAATAGGAATTCT+GGG | + | 51328:10462-10481 | MS.gene001374:CDS | 30.0% | |
TGCTTAGAAATATGACTTCA+AGG | - | 51328:8934-8953 | MS.gene001374:intergenic | 30.0% | |
TTTAGACACTAATTAGGGAA+CGG | + | 51328:7975-7994 | MS.gene001374:intron | 30.0% | |
! | AAAAAGTACAACTTGAGATC+AGG | + | 51328:8670-8689 | MS.gene001374:intron | 30.0% |
! | ACATAAGCTTTGATTCTTTC+AGG | - | 51328:7611-7630 | MS.gene001374:intergenic | 30.0% |
! | ACTTTGAGAAAGTTGTTGAT+TGG | + | 51328:9995-10014 | MS.gene001374:intron | 30.0% |
! | AGGGCAAAACAATTTAAGTT+AGG | - | 51328:10873-10892 | MS.gene001374:intergenic | 30.0% |
! | AGTATATCTCGTTTTCCTTA+CGG | + | 51328:9719-9738 | MS.gene001374:intron | 30.0% |
! | ATTTCTCTAGTTTCAAAACG+TGG | + | 51328:9590-9609 | MS.gene001374:intron | 30.0% |
! | ATTTGAAATAGATGATAGGC+CGG | + | 51328:9756-9775 | MS.gene001374:intron | 30.0% |
! | CATAAGCTTTGATTCTTTCA+GGG | - | 51328:7610-7629 | MS.gene001374:intergenic | 30.0% |
! | CTCTGAATCAAGTTTTTATC+CGG | - | 51328:9778-9797 | MS.gene001374:intergenic | 30.0% |
! | GGGCAAAACAATTTAAGTTA+GGG | - | 51328:10872-10891 | MS.gene001374:intergenic | 30.0% |
! | GTGTGTCCTTTAAAAATTTG+TGG | + | 51328:10078-10097 | MS.gene001374:intron | 30.0% |
! | TTTTAACAGTGAACACGTTA+GGG | + | 51328:9280-9299 | MS.gene001374:intron | 30.0% |
! | TTTTAACCCTTAGGTTTGTA+GGG | + | 51328:10130-10149 | MS.gene001374:intron | 30.0% |
!! | AACTTAAATTGTTTTGCCCT+TGG | + | 51328:10873-10892 | MS.gene001374:intron | 30.0% |
!! | ACTTAAATTGTTTTGCCCTT+GGG | + | 51328:10874-10893 | MS.gene001374:intron | 30.0% |
!! | ATTTTAACAGTGAACACGTT+AGG | + | 51328:9279-9298 | MS.gene001374:intron | 30.0% |
!!! | ACATGATTTTGATTTGTACG+TGG | + | 51328:7847-7866 | MS.gene001374:intron | 30.0% |
!!! | ATTTTTTGTTCTGCACACTT+AGG | + | 51328:9470-9489 | MS.gene001374:intron | 30.0% |
!!! | CGTTTTGAAACTAGAGAAAT+AGG | - | 51328:9590-9609 | MS.gene001374:intergenic | 30.0% |
!!! | TACACTTTTTTTTCCCATGT+GGG | - | 51328:8728-8747 | MS.gene001374:intergenic | 30.0% |
!!! | TTACACTTTTTTTTCCCATG+TGG | - | 51328:8729-8748 | MS.gene001374:intergenic | 30.0% |
ACAAAAAAGCCCTGTTGAAA+TGG | + | 51328:8501-8520 | MS.gene001374:intron | 35.0% | |
ACAAAGATACCAACCAATCA+TGG | - | 51328:7579-7598 | MS.gene001374:intergenic | 35.0% | |
AGAAAGGTTGGAGTTATCTT+TGG | - | 51328:9024-9043 | MS.gene001374:intergenic | 35.0% | |
AGTCTTAGTAATCCAGAGTT+CGG | + | 51328:10159-10178 | MS.gene001374:intron | 35.0% | |
ATTGCTGAGAAAGGAAAAGA+AGG | + | 51328:7314-7333 | MS.gene001374:CDS | 35.0% | |
CACACATGGTTTAGTTATGT+AGG | - | 51328:10063-10082 | MS.gene001374:intergenic | 35.0% | |
CTCTTATGCATACAAACAAC+GGG | + | 51328:8309-8328 | MS.gene001374:intron | 35.0% | |
CTTAATCTCTTTACTTTGGG+AGG | + | 51328:8276-8295 | MS.gene001374:intron | 35.0% | |
GATGCAGTTTACACTTCATT+TGG | + | 51328:11233-11252 | MS.gene001374:CDS | 35.0% | |
GTCACTCACATTTACACATA+AGG | - | 51328:8912-8931 | MS.gene001374:intergenic | 35.0% | |
TAATGCTCCTAAGATCAAAG+AGG | - | 51328:9251-9270 | MS.gene001374:intergenic | 35.0% | |
TACACAATCTTCCATTTGGT+AGG | + | 51328:7485-7504 | MS.gene001374:CDS | 35.0% | |
TAGCTACACAATCTTCCATT+TGG | + | 51328:7481-7500 | MS.gene001374:CDS | 35.0% | |
TCAAGGATTGTAACATCTGA+AGG | - | 51328:10966-10985 | MS.gene001374:intergenic | 35.0% | |
TCTTATGCATACAAACAACG+GGG | + | 51328:8310-8329 | MS.gene001374:intron | 35.0% | |
TGGTTCAATTGGTTAAAAGG+AGG | - | 51328:9451-9470 | MS.gene001374:intergenic | 35.0% | |
TTACTATATCTGCAGATTCC+AGG | + | 51328:7709-7728 | MS.gene001374:CDS | 35.0% | |
TTTAACCCTTAGGTTTGTAG+GGG | + | 51328:10131-10150 | MS.gene001374:intron | 35.0% | |
TTTGAAAAGACAGGATTCAG+TGG | + | 51328:10593-10612 | MS.gene001374:CDS | 35.0% | |
TTTGGAGGAAGTTGTTATAC+AGG | + | 51328:11304-11323 | MS.gene001374:CDS | 35.0% | |
! | TAATGGTTTGAAACATGTGC+AGG | - | 51328:9411-9430 | MS.gene001374:intergenic | 35.0% |
! | TGTATAGATTGTGCTGATGT+TGG | - | 51328:8770-8789 | MS.gene001374:intergenic | 35.0% |
! | TTTAACCCTCTTCCTCTTTT+TGG | + | 51328:7932-7951 | MS.gene001374:intron | 35.0% |
! | TTTGGGTTTCTGGGTAAATA+CGG | - | 51328:7647-7666 | MS.gene001374:intergenic | 35.0% |
!! | AATTCAGCTTCCATTTTTCC+TGG | - | 51328:10407-10426 | MS.gene001374:intergenic | 35.0% |
!! | ATGGACTGGAGCAAAAATTA+AGG | + | 51328:11181-11200 | MS.gene001374:CDS | 35.0% |
!! | CATCAACAGGTTTCACTTTT+GGG | - | 51328:7664-7683 | MS.gene001374:intergenic | 35.0% |
!! | GTTTTAACCCTTAGGTTTGT+AGG | + | 51328:10129-10148 | MS.gene001374:intron | 35.0% |
!! | TTTGATCTTAGGAGCATTAG+AGG | + | 51328:9252-9271 | MS.gene001374:intron | 35.0% |
!!! | TGCGTGGGATTTTGATTTTT+GGG | + | 51328:9669-9688 | MS.gene001374:intron | 35.0% |
!!! | TTGCGTGGGATTTTGATTTT+TGG | + | 51328:9668-9687 | MS.gene001374:intron | 35.0% |
AAATCAAAATCCCACGCAAC+AGG | - | 51328:9667-9686 | MS.gene001374:intergenic | 40.0% | |
AACATTCCATCACAAGAAGC+TGG | + | 51328:9154-9173 | MS.gene001374:intron | 40.0% | |
AACCAAGTGATTGAGCTCAA+TGG | - | 51328:10278-10297 | MS.gene001374:intergenic | 40.0% | |
AACCATTGAGCTCAATCACT+TGG | + | 51328:10273-10292 | MS.gene001374:intron | 40.0% | |
AATGGTTAATGAGCTCCTCT+AGG | - | 51328:10260-10279 | MS.gene001374:intergenic | 40.0% | |
AGTTGTTATACAGGAAGGTG+TGG | + | 51328:11313-11332 | MS.gene001374:CDS | 40.0% | |
ATGGAAGCTGAATTTGCGAA+AGG | + | 51328:10413-10432 | MS.gene001374:CDS | 40.0% | |
ATGTTCTTGATCAGCAGTTC+TGG | - | 51328:10443-10462 | MS.gene001374:intergenic | 40.0% | |
ATTGAGCTAGCTCATGAGAA+AGG | - | 51328:9040-9059 | MS.gene001374:intergenic | 40.0% | |
CAACGATATCACCTACCAAA+TGG | - | 51328:7499-7518 | MS.gene001374:intergenic | 40.0% | |
CAACGTGTAACTGACGAAAA+TGG | + | 51328:9940-9959 | MS.gene001374:intron | 40.0% | |
CACAGAACAGTGGAAGTAAA+TGG | + | 51328:7278-7297 | MS.gene001374:CDS | 40.0% | |
CATTCACGTACCACTTATAC+AGG | + | 51328:10692-10711 | MS.gene001374:intron | 40.0% | |
CATTTCCCCTACAAACCTAA+GGG | - | 51328:10139-10158 | MS.gene001374:intergenic | 40.0% | |
CCAAAAGTGAAACCTGTTGA+TGG | + | 51328:7662-7681 | MS.gene001374:CDS | 40.0% | |
CTAAGATCAAAGAGGTGATG+CGG | - | 51328:9243-9262 | MS.gene001374:intergenic | 40.0% | |
CTATCACTAGTCACACTTGA+CGG | - | 51328:8851-8870 | MS.gene001374:intergenic | 40.0% | |
CTTATGCATACAAACAACGG+GGG | + | 51328:8311-8330 | MS.gene001374:intron | 40.0% | |
GAAAGATGTGCCAAATTTGG+AGG | + | 51328:11289-11308 | MS.gene001374:CDS | 40.0% | |
GAGGAAGTTGTTATACAGGA+AGG | + | 51328:11308-11327 | MS.gene001374:CDS | 40.0% | |
GGTGATCCTACTCCTAATAT+TGG | - | 51328:8879-8898 | MS.gene001374:intergenic | 40.0% | |
GTACTTGAAGCATGTGGATT+AGG | - | 51328:10518-10537 | MS.gene001374:intergenic | 40.0% | |
GTGTAGCTACTAACTGAAGT+CGG | - | 51328:7470-7489 | MS.gene001374:intergenic | 40.0% | |
GTTCTGCACACTTAGGAATT+AGG | + | 51328:9477-9496 | MS.gene001374:intron | 40.0% | |
TAATTCAGGGATAAGTCGGA+GGG | + | 51328:9215-9234 | MS.gene001374:intron | 40.0% | |
TATCACTAGTCACACTTGAC+GGG | - | 51328:8850-8869 | MS.gene001374:intergenic | 40.0% | |
TCATTTCCCCTACAAACCTA+AGG | - | 51328:10140-10159 | MS.gene001374:intergenic | 40.0% | |
TCCACATGCTTCAAGTACAA+AGG | + | 51328:10520-10539 | MS.gene001374:CDS | 40.0% | |
TCTCGAAGGTAAGTAAAGTC+TGG | + | 51328:10182-10201 | MS.gene001374:intron | 40.0% | |
TGTTCTTGATCAGCAGTTCT+GGG | - | 51328:10442-10461 | MS.gene001374:intergenic | 40.0% | |
TTAATTCAGGGATAAGTCGG+AGG | + | 51328:9214-9233 | MS.gene001374:intron | 40.0% | |
TTCCTGAACTTTGGTACTCT+TGG | + | 51328:7363-7382 | MS.gene001374:CDS | 40.0% | |
TTGAAACATGTGCAGGTTCT+AGG | - | 51328:9404-9423 | MS.gene001374:intergenic | 40.0% | |
TTGAGCTCAATCACTTGGTT+TGG | + | 51328:10278-10297 | MS.gene001374:intron | 40.0% | |
! | AACACTGATGATGCTGCTTA+TGG | - | 51328:9190-9209 | MS.gene001374:intergenic | 40.0% |
! | CCATCAACAGGTTTCACTTT+TGG | - | 51328:7665-7684 | MS.gene001374:intergenic | 40.0% |
! | TGATTTGTACGTGGTAGACT+TGG | + | 51328:7856-7875 | MS.gene001374:intron | 40.0% |
! | TTAGGTATCACGCCTTCTTT+TGG | - | 51328:10500-10519 | MS.gene001374:intergenic | 40.0% |
! | TTTATCCACAGGGTTTTCCT+TGG | - | 51328:8704-8723 | MS.gene001374:intergenic | 40.0% |
!! | TATTGTCGCAACGCCATTTT+TGG | - | 51328:9630-9649 | MS.gene001374:intergenic | 40.0% |
!! | TCCTCTAGGACAAATCGTTT+GGG | - | 51328:10246-10265 | MS.gene001374:intergenic | 40.0% |
!! | TCTTAATTTGCCTGTTGCGT+GGG | + | 51328:9654-9673 | MS.gene001374:intron | 40.0% |
!!! | AGGTTTCACTTTTGGGTTTC+TGG | - | 51328:7657-7676 | MS.gene001374:intergenic | 40.0% |
!!! | GGGATTTTGATTTTTGGGTG+TGG | + | 51328:9674-9693 | MS.gene001374:intron | 40.0% |
!!! | GGTTTCACTTTTGGGTTTCT+GGG | - | 51328:7656-7675 | MS.gene001374:intergenic | 40.0% |
AAAGTTCAGGAAAGCCGTGA+AGG | - | 51328:7355-7374 | MS.gene001374:intergenic | 45.0% | |
ACGTACCACTTATACAGGTC+CGG | + | 51328:10697-10716 | MS.gene001374:intron | 45.0% | |
ACTAACTGAAGTCGGAGCAT+CGG | - | 51328:7462-7481 | MS.gene001374:intergenic | 45.0% | |
AGCTAGCTCATGAGAAAGGT+TGG | - | 51328:9036-9055 | MS.gene001374:intergenic | 45.0% | |
CACGCAACAGGCAAATTAAG+AGG | - | 51328:9655-9674 | MS.gene001374:intergenic | 45.0% | |
CCACCAATCCTACCAAAAGA+AGG | + | 51328:10485-10504 | MS.gene001374:CDS | 45.0% | |
CCTGTGGATAAAACCCACAT+GGG | + | 51328:8712-8731 | MS.gene001374:intron | 45.0% | |
CGAATATCAATCCATGTGCC+AGG | + | 51328:10379-10398 | MS.gene001374:intron | 45.0% | |
CGCATCACCTCTTTGATCTT+AGG | + | 51328:9241-9260 | MS.gene001374:intron | 45.0% | |
CTTCTTGTGAGAGCCAAGAA+GGG | - | 51328:10550-10569 | MS.gene001374:intergenic | 45.0% | |
GAAGCTGAATTTGCGAAAGG+TGG | + | 51328:10416-10435 | MS.gene001374:CDS | 45.0% | |
GAGAAACCGAGTTCGATTTC+TGG | - | 51328:10224-10243 | MS.gene001374:intergenic | 45.0% | |
GCCTTTGTACTTGAAGCATG+TGG | - | 51328:10524-10543 | MS.gene001374:intergenic | 45.0% | |
GGTACGTGAATGATGCACAA+GGG | - | 51328:10684-10703 | MS.gene001374:intergenic | 45.0% | |
GGTGAGACGAGAGATATGAT+GGG | + | 51328:8332-8351 | MS.gene001374:intron | 45.0% | |
GTACGTGAATGATGCACAAG+GGG | - | 51328:10683-10702 | MS.gene001374:intergenic | 45.0% | |
TAAATGGGGAAAGAGCCGTA+AGG | - | 51328:9737-9756 | MS.gene001374:intergenic | 45.0% | |
TCACCTGTGATGAACTTCAC+TGG | - | 51328:11209-11228 | MS.gene001374:intergenic | 45.0% | |
TCCCAAACGATTTGTCCTAG+AGG | + | 51328:10242-10261 | MS.gene001374:intron | 45.0% | |
TCTTCTTGTGAGAGCCAAGA+AGG | - | 51328:10551-10570 | MS.gene001374:intergenic | 45.0% | |
TGATATCCTCAGCAGCTTCT+TGG | - | 51328:11352-11371 | MS.gene001374:intergenic | 45.0% | |
TGGTACGTGAATGATGCACA+AGG | - | 51328:10685-10704 | MS.gene001374:intergenic | 45.0% | |
TTCACGGCTTTCCTGAACTT+TGG | + | 51328:7354-7373 | MS.gene001374:CDS | 45.0% | |
TTTCCGCCAGAAATCGAACT+CGG | + | 51328:10215-10234 | MS.gene001374:intron | 45.0% | |
! | AAACCGAGTTCGATTTCTGG+CGG | - | 51328:10221-10240 | MS.gene001374:intergenic | 45.0% |
! | ACGCCTTCTTTTGGTAGGAT+TGG | - | 51328:10491-10510 | MS.gene001374:intergenic | 45.0% |
! | CCTTCTTTTGGTAGGATTGG+TGG | - | 51328:10488-10507 | MS.gene001374:intergenic | 45.0% |
! | GAGATATGATGGGAGTTGTC+AGG | + | 51328:8342-8361 | MS.gene001374:intron | 45.0% |
! | GATGCTGCTTATGGTAGTCT+TGG | - | 51328:9181-9200 | MS.gene001374:intergenic | 45.0% |
! | GTATCACGCCTTCTTTTGGT+AGG | - | 51328:10496-10515 | MS.gene001374:intergenic | 45.0% |
!! | AAATTGTTTTGCCCTTGGGC+TGG | + | 51328:10878-10897 | MS.gene001374:intron | 45.0% |
!! | CAAGGGGCACCTAGTTAATT+TGG | - | 51328:10667-10686 | MS.gene001374:intergenic | 45.0% |
!! | CCATGTGGGTTTTATCCACA+GGG | - | 51328:8714-8733 | MS.gene001374:intergenic | 45.0% |
!! | CTCCTCTAGGACAAATCGTT+TGG | - | 51328:10247-10266 | MS.gene001374:intergenic | 45.0% |
!! | CTCTTAATTTGCCTGTTGCG+TGG | + | 51328:9653-9672 | MS.gene001374:intron | 45.0% |
!! | CTTCCATTTTTCCTGGTTCC+TGG | - | 51328:10400-10419 | MS.gene001374:intergenic | 45.0% |
!! | GTAGTTGGGTTGTTGCTTTC+TGG | - | 51328:9542-9561 | MS.gene001374:intergenic | 45.0% |
!! | GATTATTAATAAAAAAAAAT+TGG | + | 51328:10107-10126 | MS.gene001374:intron | 5.0% |
!!! | TAAAATTTATACTTTTTTTA+AGG | - | 51328:8190-8209 | MS.gene001374:intergenic | 5.0% |
AAAGCTCGCATGCCATCAAC+AGG | - | 51328:7677-7696 | MS.gene001374:intergenic | 50.0% | |
AATCCAGAGTTCGGTCTCGA+AGG | + | 51328:10168-10187 | MS.gene001374:intron | 50.0% | |
ACTTATACAGGTCCGGTCGA+AGG | + | 51328:10704-10723 | MS.gene001374:intron | 50.0% | |
AGGAGTAGAGCACAGAACAG+TGG | + | 51328:7268-7287 | MS.gene001374:CDS | 50.0% | |
CAACAACCAAGAAGCTGCTG+AGG | + | 51328:11343-11362 | MS.gene001374:CDS | 50.0% | |
CATGAGCAACGAGGAAGACT+TGG | - | 51328:7547-7566 | MS.gene001374:intergenic | 50.0% | |
CCCTGTGGATAAAACCCACA+TGG | + | 51328:8711-8730 | MS.gene001374:intron | 50.0% | |
CCTGTTGTCCTGTTCCTTCA+CGG | + | 51328:7338-7357 | MS.gene001374:CDS | 50.0% | |
CTTCACCAAGGAAAACCCTG+TGG | + | 51328:8696-8715 | MS.gene001374:intron | 50.0% | |
CTTCCTCGTTGCTCATGACT+GGG | + | 51328:7550-7569 | MS.gene001374:CDS | 50.0% | |
CTTGGTCCAGCTTCTTGTGA+TGG | - | 51328:9163-9182 | MS.gene001374:intergenic | 50.0% | |
GAGATCAGGTTCCTTCACCA+AGG | + | 51328:8684-8703 | MS.gene001374:intron | 50.0% | |
GGGTGAGACGAGAGATATGA+TGG | + | 51328:8331-8350 | MS.gene001374:intron | 50.0% | |
GTGCCAGGAACCAGGAAAAA+TGG | + | 51328:10394-10413 | MS.gene001374:intron | 50.0% | |
GTGCCAGTGAAGTTCATCAC+AGG | + | 51328:11203-11222 | MS.gene001374:CDS | 50.0% | |
TCTTCCTCGTTGCTCATGAC+TGG | + | 51328:7549-7568 | MS.gene001374:CDS | 50.0% | |
TTACCTTCGAGACCGAACTC+TGG | - | 51328:10174-10193 | MS.gene001374:intergenic | 50.0% | |
TTCCTCGTTGCTCATGACTG+GGG | + | 51328:7551-7570 | MS.gene001374:CDS | 50.0% | |
TTCGACCGGACCTGTATAAG+TGG | - | 51328:10705-10724 | MS.gene001374:intergenic | 50.0% | |
TTGTGAGAGCCAAGAAGGGA+GGG | - | 51328:10546-10565 | MS.gene001374:intergenic | 50.0% | |
! | CACAGGGTTTTCCTTGGTGA+AGG | - | 51328:8698-8717 | MS.gene001374:intergenic | 50.0% |
! | TTTTCCTGGTTCCTGGCACA+TGG | - | 51328:10393-10412 | MS.gene001374:intergenic | 50.0% |
!! | CCCATGTGGGTTTTATCCAC+AGG | - | 51328:8715-8734 | MS.gene001374:intergenic | 50.0% |
!! | CGCCAAGAGTACCAAAGTTC+AGG | - | 51328:7368-7387 | MS.gene001374:intergenic | 50.0% |
!! | GATGGCATGCGAGCTTTGTT+TGG | + | 51328:7680-7699 | MS.gene001374:CDS | 50.0% |
!! | GTTGCTCTCATCGACTCACT+CGG | + | 51328:7515-7534 | MS.gene001374:CDS | 50.0% |
AGCAACAGCACGGTAACCGA+GGG | - | 51328:7414-7433 | MS.gene001374:intergenic | 55.0% | |
ATTGGGAGCTCACTGCAGCA+TGG | + | 51328:11162-11181 | MS.gene001374:CDS | 55.0% | |
CAATCCATGTGCCAGGAACC+AGG | + | 51328:10386-10405 | MS.gene001374:intron | 55.0% | |
CAGGAAAGCCGTGAAGGAAC+AGG | - | 51328:7349-7368 | MS.gene001374:intergenic | 55.0% | |
CCCAGGTTTGAACCTTCGAC+CGG | - | 51328:10719-10738 | MS.gene001374:intergenic | 55.0% | |
CCGGTCGAAGGTTCAAACCT+GGG | + | 51328:10716-10735 | MS.gene001374:intron | 55.0% | |
CCGTGAAGGAACAGGACAAC+AGG | - | 51328:7341-7360 | MS.gene001374:intergenic | 55.0% | |
CTTCATAGCCTGCTTGACCC+AGG | - | 51328:10736-10755 | MS.gene001374:intergenic | 55.0% | |
CTTGTGAGAGCCAAGAAGGG+AGG | - | 51328:10547-10566 | MS.gene001374:intergenic | 55.0% | |
GCTCCAGATCTCCGTGGATA+CGG | + | 51328:7431-7450 | MS.gene001374:CDS | 55.0% | |
GGTTCAAACCTGGGTCAAGC+AGG | + | 51328:10725-10744 | MS.gene001374:intron | 55.0% | |
GTACAAAGGCCCTCCCTTCT+TGG | + | 51328:10534-10553 | MS.gene001374:CDS | 55.0% | |
TCACCGTATCCACGGAGATC+TGG | - | 51328:7437-7456 | MS.gene001374:intergenic | 55.0% | |
TCCGGTCGAAGGTTCAAACC+TGG | + | 51328:10715-10734 | MS.gene001374:intron | 55.0% | |
! | ACTGGGGTGCCATGATTGGT+TGG | + | 51328:7567-7586 | MS.gene001374:CDS | 55.0% |
! | CATGACTGGGGTGCCATGAT+TGG | + | 51328:7563-7582 | MS.gene001374:CDS | 55.0% |
! | GGAGATCTGGAGCAACAGCA+CGG | - | 51328:7424-7443 | MS.gene001374:intergenic | 55.0% |
!! | CATCGGTGTCACCGTATCCA+CGG | - | 51328:7445-7464 | MS.gene001374:intergenic | 55.0% |
CACCCCAGTCATGAGCAACG+AGG | - | 51328:7556-7575 | MS.gene001374:intergenic | 60.0% | |
CTCTTGGCGCCACCAGATTG+CGG | + | 51328:7379-7398 | MS.gene001374:CDS | 60.0% | |
GAGCAACAGCACGGTAACCG+AGG | - | 51328:7415-7434 | MS.gene001374:intergenic | 60.0% | |
GAGCTCACTGCAGCATGGAC+TGG | + | 51328:11167-11186 | MS.gene001374:CDS | 60.0% | |
GCTGTTGCTCCAGATCTCCG+TGG | + | 51328:7425-7444 | MS.gene001374:CDS | 60.0% | |
ACAAGTGCAGGGCCAGCCCA+AGG | - | 51328:10893-10912 | MS.gene001374:intergenic | 65.0% | |
AGCCGAGAGCCGCAATCTGG+TGG | - | 51328:7391-7410 | MS.gene001374:intergenic | 65.0% | |
ATTGCGGCTCTCGGCTCCCT+CGG | + | 51328:7395-7414 | MS.gene001374:CDS | 65.0% | |
CAAGTGCAGGGCCAGCCCAA+GGG | - | 51328:10892-10911 | MS.gene001374:intergenic | 65.0% | |
CGCCACCAGATTGCGGCTCT+CGG | + | 51328:7386-7405 | MS.gene001374:CDS | 65.0% | |
GGGAGCCGAGAGCCGCAATC+TGG | - | 51328:7394-7413 | MS.gene001374:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51328 | gene | 7263 | 11406 | 7263 | ID=MS.gene001374 |
51328 | mRNA | 7263 | 11406 | 7263 | ID=MS.gene001374.t1;Parent=MS.gene001374 |
51328 | exon | 7263 | 7730 | 7263 | ID=MS.gene001374.t1.exon1;Parent=MS.gene001374.t1 |
51328 | CDS | 7263 | 7730 | 7263 | ID=cds.MS.gene001374.t1;Parent=MS.gene001374.t1 |
51328 | exon | 10401 | 10645 | 10401 | ID=MS.gene001374.t1.exon2;Parent=MS.gene001374.t1 |
51328 | CDS | 10401 | 10645 | 10401 | ID=cds.MS.gene001374.t1;Parent=MS.gene001374.t1 |
51328 | exon | 11160 | 11406 | 11160 | ID=MS.gene001374.t1.exon3;Parent=MS.gene001374.t1 |
51328 | CDS | 11160 | 11406 | 11160 | ID=cds.MS.gene001374.t1;Parent=MS.gene001374.t1 |
Gene Sequence |
Protein sequence |