AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001374


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001374.t1 MTR_7g112960 97.179 319 9 0 1 319 1 319 0.0 650
MS.gene001374.t1 MTR_7g112963 88.088 319 38 0 1 319 1 319 0.0 596
MS.gene001374.t1 MTR_7g112970 88.401 319 34 1 1 319 1 316 0.0 588
MS.gene001374.t1 MTR_7g113020 78.997 319 67 0 1 319 1 319 0.0 538
MS.gene001374.t1 MTR_7g113050 78.505 321 65 2 1 319 1 319 0.0 529
MS.gene001374.t1 MTR_7g113030 77.429 319 72 0 1 319 1 319 0.0 528
MS.gene001374.t1 MTR_7g113010 87.189 281 36 0 1 281 1 281 0.0 527
MS.gene001374.t1 MTR_7g112620 75.862 319 77 0 1 319 1 319 0.0 521
MS.gene001374.t1 MTR_7g112615 76.489 319 75 0 1 319 1 319 0.0 520
MS.gene001374.t1 MTR_4g005160 68.731 323 96 3 1 319 1 322 6.24e-166 464
MS.gene001374.t1 MTR_4g120240 62.617 321 116 3 1 319 37 355 3.09e-148 421
MS.gene001374.t1 MTR_7g108825 62.112 322 114 3 1 319 1 317 1.43e-146 415
MS.gene001374.t1 MTR_7g113050 77.917 240 49 2 1 238 1 238 3.95e-139 393
MS.gene001374.t1 MTR_7g112615 75.630 238 58 0 1 238 1 238 8.72e-137 387
MS.gene001374.t1 MTR_8g076680 47.678 323 157 5 1 319 3 317 1.84e-109 321
MS.gene001374.t1 MTR_7g108825 60.996 241 86 3 1 238 1 236 4.68e-104 304
MS.gene001374.t1 MTR_7g112615 80.571 175 31 1 1 172 1 175 1.17e-102 298
MS.gene001374.t1 MTR_1g083480 76.730 159 33 2 1 156 1 158 3.91e-88 261
MS.gene001374.t1 MTR_8g076680 47.107 242 118 3 1 238 3 238 1.91e-83 252
MS.gene001374.t1 MTR_7g112910 50.199 251 66 7 72 319 1 195 5.43e-71 219
MS.gene001374.t1 MTR_2g090240 37.188 320 189 6 1 318 1 310 3.68e-67 213
MS.gene001374.t1 MTR_2g090245 36.562 320 191 7 1 318 1 310 1.35e-65 209
MS.gene001374.t1 MTR_4g089060 35.826 321 191 6 1 318 1 309 4.46e-65 207
MS.gene001374.t1 MTR_4g089040 36.250 320 191 6 1 318 1 309 1.49e-64 206
MS.gene001374.t1 MTR_4g089060 33.333 348 190 7 1 318 1 336 4.39e-60 196
MS.gene001374.t1 MTR_3g024250 79.245 106 22 0 47 152 2 107 2.43e-56 179
MS.gene001374.t1 MTR_4g089060 37.339 233 137 3 1 231 1 226 2.24e-54 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001374.t1 AT3G05600 63.692 325 111 4 1 319 1 324 1.69e-158 446
MS.gene001374.t1 AT4G02340 59.317 322 122 3 1 319 1 316 3.23e-146 414
MS.gene001374.t1 AT4G15960 55.077 325 139 3 1 319 51 374 2.74e-131 379
MS.gene001374.t1 AT2G26740 58.385 322 127 4 4 319 1 321 1.26e-126 365
MS.gene001374.t1 AT2G26750 56.075 321 135 4 4 319 1 320 2.93e-121 351
MS.gene001374.t1 AT3G05600 65.164 244 78 4 1 238 1 243 5.26e-119 342
MS.gene001374.t1 AT4G15955 50.462 325 125 4 5 319 6 304 3.76e-112 327
MS.gene001374.t1 AT3G51000 49.686 318 155 5 4 319 5 319 1.71e-108 319
MS.gene001374.t1 AT4G15955 61.272 173 57 2 5 167 6 178 1.51e-74 227
MS.gene001374.t1 AT4G15955 60.606 165 55 2 5 159 6 170 1.63e-69 214

Find 0 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAACCAAAAAG+AGG - 51328:7947-7966 MS.gene001374:intergenic 15.0%
!! AACAATATAATGGTTATAAT+TGG + 51328:8048-8067 MS.gene001374:intron 15.0%
!! ATCATCTATTTCAAATAAAT+GGG - 51328:9752-9771 MS.gene001374:intergenic 15.0%
!! TATCATCTATTTCAAATAAA+TGG - 51328:9753-9772 MS.gene001374:intergenic 15.0%
!! TTGAAGTTTATATAATTGTT+GGG - 51328:8972-8991 MS.gene001374:intergenic 15.0%
!!! AAAATGTTAGATTTTTAACT+TGG + 51328:9825-9844 MS.gene001374:intron 15.0%
!!! AGATAGATCAAAAATTTTAA+TGG - 51328:9428-9447 MS.gene001374:intergenic 15.0%
!!! AGTATATTGTTTGATTTTAA+TGG + 51328:8090-8109 MS.gene001374:intron 15.0%
!!! ATTTATTTGAAATAGATGAT+AGG + 51328:9752-9771 MS.gene001374:intron 15.0%
!!! GTATATTGTTTGATTTTAAT+GGG + 51328:8091-8110 MS.gene001374:intron 15.0%
!!! TAAATTCCACAAATTTTTAA+AGG - 51328:10087-10106 MS.gene001374:intergenic 15.0%
!!! TATATTGTTTGATTTTAATG+GGG + 51328:8092-8111 MS.gene001374:intron 15.0%
!! AAATGTGATATCAAAATTCA+AGG - 51328:10983-11002 MS.gene001374:intergenic 20.0%
!! AGTAGTACAAAAATGAATTT+AGG + 51328:8467-8486 MS.gene001374:intron 20.0%
!! CAACAATTATATAAACTTCA+AGG + 51328:8971-8990 MS.gene001374:intron 20.0%
!! CAATAAAAGAAATTCAAAAG+AGG - 51328:8548-8567 MS.gene001374:intergenic 20.0%
!! CATTCAATCAAACAATATAA+TGG + 51328:8038-8057 MS.gene001374:intron 20.0%
!! CTATTAACAAATACAACATT+TGG - 51328:11109-11128 MS.gene001374:intergenic 20.0%
!! CTTGAAGTTTATATAATTGT+TGG - 51328:8973-8992 MS.gene001374:intergenic 20.0%
!! GTATCATATATACAGAAATT+GGG + 51328:11145-11164 MS.gene001374:intron 20.0%
!! TCATCTATTTCAAATAAATG+GGG - 51328:9751-9770 MS.gene001374:intergenic 20.0%
!! TGTATCATATATACAGAAAT+TGG + 51328:11144-11163 MS.gene001374:intron 20.0%
!!! ATTAATAAACTTTTTAGAGC+AGG - 51328:8640-8659 MS.gene001374:intergenic 20.0%
!!! TTTCAAATGTTTTTTTTGAG+TGG - 51328:9333-9352 MS.gene001374:intergenic 20.0%
! AAATGGTTCAATTGGTTAAA+AGG - 51328:9454-9473 MS.gene001374:intergenic 25.0%
! AAGCAATAATTACAAGTAGT+TGG - 51328:9557-9576 MS.gene001374:intergenic 25.0%
! AATTTAGTTAGTCAAGAAGA+GGG - 51328:10759-10778 MS.gene001374:intergenic 25.0%
! AGAACAAAAAATGGTTCAAT+TGG - 51328:9462-9481 MS.gene001374:intergenic 25.0%
! AGCAATAATTACAAGTAGTT+GGG - 51328:9556-9575 MS.gene001374:intergenic 25.0%
! AGTACAAAAATGAATTTAGG+TGG + 51328:8470-8489 MS.gene001374:intron 25.0%
! ATCAGTGTTACATTTAATTC+AGG + 51328:9201-9220 MS.gene001374:intron 25.0%
! ATTAGGATTTACTAGGAATT+AGG + 51328:9494-9513 MS.gene001374:intron 25.0%
! GAGATTTCTATAGTAGTTAA+GGG - 51328:10621-10640 MS.gene001374:intergenic 25.0%
! GTGATAGAAATACCAATATT+AGG + 51328:8864-8883 MS.gene001374:intron 25.0%
! TAATTAGTGTCTAAACTGAA+AGG - 51328:7970-7989 MS.gene001374:intergenic 25.0%
! TATCATGTCAGATTCTATTA+AGG - 51328:8826-8845 MS.gene001374:intergenic 25.0%
! TCAGTGTTACATTTAATTCA+GGG + 51328:9202-9221 MS.gene001374:intron 25.0%
! TGAGATTTCTATAGTAGTTA+AGG - 51328:10622-10641 MS.gene001374:intergenic 25.0%
! TGTTGAAATGGAGATAAAAT+TGG + 51328:8513-8532 MS.gene001374:intron 25.0%
! TTCAGTTTAGACACTAATTA+GGG + 51328:7970-7989 MS.gene001374:intron 25.0%
! TTTCAGTTTAGACACTAATT+AGG + 51328:7969-7988 MS.gene001374:intron 25.0%
!! AAACTAGAGAAATAGGATTT+TGG - 51328:9583-9602 MS.gene001374:intergenic 25.0%
!! AAGCATTTGCAAATTTTACA+AGG - 51328:9877-9896 MS.gene001374:intergenic 25.0%
!! AATTTTATCTCCATTTCAAC+AGG - 51328:8514-8533 MS.gene001374:intergenic 25.0%
!! ATTTTATCTCCATTTCAACA+GGG - 51328:8513-8532 MS.gene001374:intergenic 25.0%
!! GATTACGAAACTAATTTTCT+TGG - 51328:9130-9149 MS.gene001374:intergenic 25.0%
!! GTTTTTCATCGTAATAGATT+AGG - 51328:8801-8820 MS.gene001374:intergenic 25.0%
!!! AAAAATTGGTTTTAACCCTT+AGG + 51328:10121-10140 MS.gene001374:intron 25.0%
!!! AAATTTTTAAAGGACACACA+TGG - 51328:10077-10096 MS.gene001374:intergenic 25.0%
!!! ACAATTTAAGTTAGGGTTTT+AGG - 51328:10865-10884 MS.gene001374:intergenic 25.0%
!!! GGTTGTTTTGCTTATAATAT+TGG - 51328:9109-9128 MS.gene001374:intergenic 25.0%
!!! GTCATTTTTCCAAATTAACT+AGG + 51328:10655-10674 MS.gene001374:intron 25.0%
!!! TTGTGTTTGTTTTCCAAAAA+TGG + 51328:9614-9633 MS.gene001374:intron 25.0%
AAAAAACCAAAAAGAGGAAG+AGG - 51328:7941-7960 MS.gene001373:intergenic 30.0%
AAAAACCAAAAAGAGGAAGA+GGG - 51328:7940-7959 MS.gene001373:intergenic 30.0%
AAAATGCATATTGCTGAGAA+AGG + 51328:7305-7324 MS.gene001374:CDS 30.0%
AAAGTTATGGCATCTCAATT+AGG + 51328:8582-8601 MS.gene001374:intron 30.0%
AAGTCAAAAGAGCAGTTAAA+AGG - 51328:7914-7933 MS.gene001374:intergenic 30.0%
AATAATGCAAGCAGAAATAG+TGG - 51328:7791-7810 MS.gene001374:intergenic 30.0%
AGAATATAAGAAAACGAACC+TGG - 51328:7730-7749 MS.gene001374:intergenic 30.0%
AGAGAATATCCAATTTGGTA+TGG + 51328:9794-9813 MS.gene001374:intron 30.0%
AGTAACTTAGACAGATTCAA+AGG - 51328:7819-7838 MS.gene001374:intergenic 30.0%
ATAACAACTTCCTCCAAATT+TGG - 51328:11302-11321 MS.gene001374:intergenic 30.0%
ATGCTTACAAATAGGAATTC+TGG + 51328:10461-10480 MS.gene001374:CDS 30.0%
ATGCTTATGAATAATCACGA+TGG + 51328:9891-9910 MS.gene001374:intron 30.0%
CAAATAGAAATACAAGTGCA+GGG - 51328:10904-10923 MS.gene001374:intergenic 30.0%
CAATTTAGTTAGTCAAGAAG+AGG - 51328:10760-10779 MS.gene001374:intergenic 30.0%
CATTTAATTCAGGGATAAGT+CGG + 51328:9211-9230 MS.gene001374:intron 30.0%
CGTCTTAATCTCTTTACTTT+GGG + 51328:8273-8292 MS.gene001374:intron 30.0%
CTCTTCTTGACTAACTAAAT+TGG + 51328:10758-10777 MS.gene001374:intron 30.0%
CTTAGGAATTAGGATTTACT+AGG + 51328:9487-9506 MS.gene001374:intron 30.0%
GAAATACCAATATTAGGAGT+AGG + 51328:8870-8889 MS.gene001374:intron 30.0%
GAGAATATCCAATTTGGTAT+GGG + 51328:9795-9814 MS.gene001374:intron 30.0%
GATTCAGAGAATATCCAATT+TGG + 51328:9789-9808 MS.gene001374:intron 30.0%
GCAATAGATTGCAAAAGTTA+TGG + 51328:8569-8588 MS.gene001374:intron 30.0%
GCTTCTAAATTTGAAAAGAC+AGG + 51328:10584-10603 MS.gene001374:CDS 30.0%
GTAACTTAGACAGATTCAAA+GGG - 51328:7818-7837 MS.gene001374:intergenic 30.0%
TAACTTAGACAGATTCAAAG+GGG - 51328:7817-7836 MS.gene001374:intergenic 30.0%
TAAGAAAGATGTGCCAAATT+TGG + 51328:11286-11305 MS.gene001374:CDS 30.0%
TAAGTGTGCAGAACAAAAAA+TGG - 51328:9471-9490 MS.gene001374:intergenic 30.0%
TAATTGTTGGGAAAACTGTT+TGG - 51328:8960-8979 MS.gene001374:intergenic 30.0%
TACACATAAGGAAATTGTTG+TGG - 51328:8900-8919 MS.gene001374:intergenic 30.0%
TCAAATAGAAATACAAGTGC+AGG - 51328:10905-10924 MS.gene001374:intergenic 30.0%
TCAAGAACATGCTTACAAAT+AGG + 51328:10453-10472 MS.gene001374:CDS 30.0%
TCGTCTTAATCTCTTTACTT+TGG + 51328:8272-8291 MS.gene001374:intron 30.0%
TCTCTTATGCATACAAACAA+CGG + 51328:8308-8327 MS.gene001374:intron 30.0%
TGATTAAACCCATACCAAAT+TGG - 51328:9806-9825 MS.gene001374:intergenic 30.0%
TGCTTACAAATAGGAATTCT+GGG + 51328:10462-10481 MS.gene001374:CDS 30.0%
TGCTTAGAAATATGACTTCA+AGG - 51328:8934-8953 MS.gene001374:intergenic 30.0%
TTTAGACACTAATTAGGGAA+CGG + 51328:7975-7994 MS.gene001374:intron 30.0%
! AAAAAGTACAACTTGAGATC+AGG + 51328:8670-8689 MS.gene001374:intron 30.0%
! ACATAAGCTTTGATTCTTTC+AGG - 51328:7611-7630 MS.gene001374:intergenic 30.0%
! ACTTTGAGAAAGTTGTTGAT+TGG + 51328:9995-10014 MS.gene001374:intron 30.0%
! AGGGCAAAACAATTTAAGTT+AGG - 51328:10873-10892 MS.gene001374:intergenic 30.0%
! AGTATATCTCGTTTTCCTTA+CGG + 51328:9719-9738 MS.gene001374:intron 30.0%
! ATTTCTCTAGTTTCAAAACG+TGG + 51328:9590-9609 MS.gene001374:intron 30.0%
! ATTTGAAATAGATGATAGGC+CGG + 51328:9756-9775 MS.gene001374:intron 30.0%
! CATAAGCTTTGATTCTTTCA+GGG - 51328:7610-7629 MS.gene001374:intergenic 30.0%
! CTCTGAATCAAGTTTTTATC+CGG - 51328:9778-9797 MS.gene001374:intergenic 30.0%
! GGGCAAAACAATTTAAGTTA+GGG - 51328:10872-10891 MS.gene001374:intergenic 30.0%
! GTGTGTCCTTTAAAAATTTG+TGG + 51328:10078-10097 MS.gene001374:intron 30.0%
! TTTTAACAGTGAACACGTTA+GGG + 51328:9280-9299 MS.gene001374:intron 30.0%
! TTTTAACCCTTAGGTTTGTA+GGG + 51328:10130-10149 MS.gene001374:intron 30.0%
!! AACTTAAATTGTTTTGCCCT+TGG + 51328:10873-10892 MS.gene001374:intron 30.0%
!! ACTTAAATTGTTTTGCCCTT+GGG + 51328:10874-10893 MS.gene001374:intron 30.0%
!! ATTTTAACAGTGAACACGTT+AGG + 51328:9279-9298 MS.gene001374:intron 30.0%
!!! ACATGATTTTGATTTGTACG+TGG + 51328:7847-7866 MS.gene001374:intron 30.0%
!!! ATTTTTTGTTCTGCACACTT+AGG + 51328:9470-9489 MS.gene001374:intron 30.0%
!!! CGTTTTGAAACTAGAGAAAT+AGG - 51328:9590-9609 MS.gene001374:intergenic 30.0%
!!! TACACTTTTTTTTCCCATGT+GGG - 51328:8728-8747 MS.gene001374:intergenic 30.0%
!!! TTACACTTTTTTTTCCCATG+TGG - 51328:8729-8748 MS.gene001374:intergenic 30.0%
ACAAAAAAGCCCTGTTGAAA+TGG + 51328:8501-8520 MS.gene001374:intron 35.0%
ACAAAGATACCAACCAATCA+TGG - 51328:7579-7598 MS.gene001374:intergenic 35.0%
AGAAAGGTTGGAGTTATCTT+TGG - 51328:9024-9043 MS.gene001374:intergenic 35.0%
AGTCTTAGTAATCCAGAGTT+CGG + 51328:10159-10178 MS.gene001374:intron 35.0%
ATTGCTGAGAAAGGAAAAGA+AGG + 51328:7314-7333 MS.gene001374:CDS 35.0%
CACACATGGTTTAGTTATGT+AGG - 51328:10063-10082 MS.gene001374:intergenic 35.0%
CTCTTATGCATACAAACAAC+GGG + 51328:8309-8328 MS.gene001374:intron 35.0%
CTTAATCTCTTTACTTTGGG+AGG + 51328:8276-8295 MS.gene001374:intron 35.0%
GATGCAGTTTACACTTCATT+TGG + 51328:11233-11252 MS.gene001374:CDS 35.0%
GTCACTCACATTTACACATA+AGG - 51328:8912-8931 MS.gene001374:intergenic 35.0%
TAATGCTCCTAAGATCAAAG+AGG - 51328:9251-9270 MS.gene001374:intergenic 35.0%
TACACAATCTTCCATTTGGT+AGG + 51328:7485-7504 MS.gene001374:CDS 35.0%
TAGCTACACAATCTTCCATT+TGG + 51328:7481-7500 MS.gene001374:CDS 35.0%
TCAAGGATTGTAACATCTGA+AGG - 51328:10966-10985 MS.gene001374:intergenic 35.0%
TCTTATGCATACAAACAACG+GGG + 51328:8310-8329 MS.gene001374:intron 35.0%
TGGTTCAATTGGTTAAAAGG+AGG - 51328:9451-9470 MS.gene001374:intergenic 35.0%
TTACTATATCTGCAGATTCC+AGG + 51328:7709-7728 MS.gene001374:CDS 35.0%
TTTAACCCTTAGGTTTGTAG+GGG + 51328:10131-10150 MS.gene001374:intron 35.0%
TTTGAAAAGACAGGATTCAG+TGG + 51328:10593-10612 MS.gene001374:CDS 35.0%
TTTGGAGGAAGTTGTTATAC+AGG + 51328:11304-11323 MS.gene001374:CDS 35.0%
! TAATGGTTTGAAACATGTGC+AGG - 51328:9411-9430 MS.gene001374:intergenic 35.0%
! TGTATAGATTGTGCTGATGT+TGG - 51328:8770-8789 MS.gene001374:intergenic 35.0%
! TTTAACCCTCTTCCTCTTTT+TGG + 51328:7932-7951 MS.gene001374:intron 35.0%
! TTTGGGTTTCTGGGTAAATA+CGG - 51328:7647-7666 MS.gene001374:intergenic 35.0%
!! AATTCAGCTTCCATTTTTCC+TGG - 51328:10407-10426 MS.gene001374:intergenic 35.0%
!! ATGGACTGGAGCAAAAATTA+AGG + 51328:11181-11200 MS.gene001374:CDS 35.0%
!! CATCAACAGGTTTCACTTTT+GGG - 51328:7664-7683 MS.gene001374:intergenic 35.0%
!! GTTTTAACCCTTAGGTTTGT+AGG + 51328:10129-10148 MS.gene001374:intron 35.0%
!! TTTGATCTTAGGAGCATTAG+AGG + 51328:9252-9271 MS.gene001374:intron 35.0%
!!! TGCGTGGGATTTTGATTTTT+GGG + 51328:9669-9688 MS.gene001374:intron 35.0%
!!! TTGCGTGGGATTTTGATTTT+TGG + 51328:9668-9687 MS.gene001374:intron 35.0%
AAATCAAAATCCCACGCAAC+AGG - 51328:9667-9686 MS.gene001374:intergenic 40.0%
AACATTCCATCACAAGAAGC+TGG + 51328:9154-9173 MS.gene001374:intron 40.0%
AACCAAGTGATTGAGCTCAA+TGG - 51328:10278-10297 MS.gene001374:intergenic 40.0%
AACCATTGAGCTCAATCACT+TGG + 51328:10273-10292 MS.gene001374:intron 40.0%
AATGGTTAATGAGCTCCTCT+AGG - 51328:10260-10279 MS.gene001374:intergenic 40.0%
AGTTGTTATACAGGAAGGTG+TGG + 51328:11313-11332 MS.gene001374:CDS 40.0%
ATGGAAGCTGAATTTGCGAA+AGG + 51328:10413-10432 MS.gene001374:CDS 40.0%
ATGTTCTTGATCAGCAGTTC+TGG - 51328:10443-10462 MS.gene001374:intergenic 40.0%
ATTGAGCTAGCTCATGAGAA+AGG - 51328:9040-9059 MS.gene001374:intergenic 40.0%
CAACGATATCACCTACCAAA+TGG - 51328:7499-7518 MS.gene001374:intergenic 40.0%
CAACGTGTAACTGACGAAAA+TGG + 51328:9940-9959 MS.gene001374:intron 40.0%
CACAGAACAGTGGAAGTAAA+TGG + 51328:7278-7297 MS.gene001374:CDS 40.0%
CATTCACGTACCACTTATAC+AGG + 51328:10692-10711 MS.gene001374:intron 40.0%
CATTTCCCCTACAAACCTAA+GGG - 51328:10139-10158 MS.gene001374:intergenic 40.0%
CCAAAAGTGAAACCTGTTGA+TGG + 51328:7662-7681 MS.gene001374:CDS 40.0%
CTAAGATCAAAGAGGTGATG+CGG - 51328:9243-9262 MS.gene001374:intergenic 40.0%
CTATCACTAGTCACACTTGA+CGG - 51328:8851-8870 MS.gene001374:intergenic 40.0%
CTTATGCATACAAACAACGG+GGG + 51328:8311-8330 MS.gene001374:intron 40.0%
GAAAGATGTGCCAAATTTGG+AGG + 51328:11289-11308 MS.gene001374:CDS 40.0%
GAGGAAGTTGTTATACAGGA+AGG + 51328:11308-11327 MS.gene001374:CDS 40.0%
GGTGATCCTACTCCTAATAT+TGG - 51328:8879-8898 MS.gene001374:intergenic 40.0%
GTACTTGAAGCATGTGGATT+AGG - 51328:10518-10537 MS.gene001374:intergenic 40.0%
GTGTAGCTACTAACTGAAGT+CGG - 51328:7470-7489 MS.gene001374:intergenic 40.0%
GTTCTGCACACTTAGGAATT+AGG + 51328:9477-9496 MS.gene001374:intron 40.0%
TAATTCAGGGATAAGTCGGA+GGG + 51328:9215-9234 MS.gene001374:intron 40.0%
TATCACTAGTCACACTTGAC+GGG - 51328:8850-8869 MS.gene001374:intergenic 40.0%
TCATTTCCCCTACAAACCTA+AGG - 51328:10140-10159 MS.gene001374:intergenic 40.0%
TCCACATGCTTCAAGTACAA+AGG + 51328:10520-10539 MS.gene001374:CDS 40.0%
TCTCGAAGGTAAGTAAAGTC+TGG + 51328:10182-10201 MS.gene001374:intron 40.0%
TGTTCTTGATCAGCAGTTCT+GGG - 51328:10442-10461 MS.gene001374:intergenic 40.0%
TTAATTCAGGGATAAGTCGG+AGG + 51328:9214-9233 MS.gene001374:intron 40.0%
TTCCTGAACTTTGGTACTCT+TGG + 51328:7363-7382 MS.gene001374:CDS 40.0%
TTGAAACATGTGCAGGTTCT+AGG - 51328:9404-9423 MS.gene001374:intergenic 40.0%
TTGAGCTCAATCACTTGGTT+TGG + 51328:10278-10297 MS.gene001374:intron 40.0%
! AACACTGATGATGCTGCTTA+TGG - 51328:9190-9209 MS.gene001374:intergenic 40.0%
! CCATCAACAGGTTTCACTTT+TGG - 51328:7665-7684 MS.gene001374:intergenic 40.0%
! TGATTTGTACGTGGTAGACT+TGG + 51328:7856-7875 MS.gene001374:intron 40.0%
! TTAGGTATCACGCCTTCTTT+TGG - 51328:10500-10519 MS.gene001374:intergenic 40.0%
! TTTATCCACAGGGTTTTCCT+TGG - 51328:8704-8723 MS.gene001374:intergenic 40.0%
!! TATTGTCGCAACGCCATTTT+TGG - 51328:9630-9649 MS.gene001374:intergenic 40.0%
!! TCCTCTAGGACAAATCGTTT+GGG - 51328:10246-10265 MS.gene001374:intergenic 40.0%
!! TCTTAATTTGCCTGTTGCGT+GGG + 51328:9654-9673 MS.gene001374:intron 40.0%
!!! AGGTTTCACTTTTGGGTTTC+TGG - 51328:7657-7676 MS.gene001374:intergenic 40.0%
!!! GGGATTTTGATTTTTGGGTG+TGG + 51328:9674-9693 MS.gene001374:intron 40.0%
!!! GGTTTCACTTTTGGGTTTCT+GGG - 51328:7656-7675 MS.gene001374:intergenic 40.0%
AAAGTTCAGGAAAGCCGTGA+AGG - 51328:7355-7374 MS.gene001374:intergenic 45.0%
ACGTACCACTTATACAGGTC+CGG + 51328:10697-10716 MS.gene001374:intron 45.0%
ACTAACTGAAGTCGGAGCAT+CGG - 51328:7462-7481 MS.gene001374:intergenic 45.0%
AGCTAGCTCATGAGAAAGGT+TGG - 51328:9036-9055 MS.gene001374:intergenic 45.0%
CACGCAACAGGCAAATTAAG+AGG - 51328:9655-9674 MS.gene001374:intergenic 45.0%
CCACCAATCCTACCAAAAGA+AGG + 51328:10485-10504 MS.gene001374:CDS 45.0%
CCTGTGGATAAAACCCACAT+GGG + 51328:8712-8731 MS.gene001374:intron 45.0%
CGAATATCAATCCATGTGCC+AGG + 51328:10379-10398 MS.gene001374:intron 45.0%
CGCATCACCTCTTTGATCTT+AGG + 51328:9241-9260 MS.gene001374:intron 45.0%
CTTCTTGTGAGAGCCAAGAA+GGG - 51328:10550-10569 MS.gene001374:intergenic 45.0%
GAAGCTGAATTTGCGAAAGG+TGG + 51328:10416-10435 MS.gene001374:CDS 45.0%
GAGAAACCGAGTTCGATTTC+TGG - 51328:10224-10243 MS.gene001374:intergenic 45.0%
GCCTTTGTACTTGAAGCATG+TGG - 51328:10524-10543 MS.gene001374:intergenic 45.0%
GGTACGTGAATGATGCACAA+GGG - 51328:10684-10703 MS.gene001374:intergenic 45.0%
GGTGAGACGAGAGATATGAT+GGG + 51328:8332-8351 MS.gene001374:intron 45.0%
GTACGTGAATGATGCACAAG+GGG - 51328:10683-10702 MS.gene001374:intergenic 45.0%
TAAATGGGGAAAGAGCCGTA+AGG - 51328:9737-9756 MS.gene001374:intergenic 45.0%
TCACCTGTGATGAACTTCAC+TGG - 51328:11209-11228 MS.gene001374:intergenic 45.0%
TCCCAAACGATTTGTCCTAG+AGG + 51328:10242-10261 MS.gene001374:intron 45.0%
TCTTCTTGTGAGAGCCAAGA+AGG - 51328:10551-10570 MS.gene001374:intergenic 45.0%
TGATATCCTCAGCAGCTTCT+TGG - 51328:11352-11371 MS.gene001374:intergenic 45.0%
TGGTACGTGAATGATGCACA+AGG - 51328:10685-10704 MS.gene001374:intergenic 45.0%
TTCACGGCTTTCCTGAACTT+TGG + 51328:7354-7373 MS.gene001374:CDS 45.0%
TTTCCGCCAGAAATCGAACT+CGG + 51328:10215-10234 MS.gene001374:intron 45.0%
! AAACCGAGTTCGATTTCTGG+CGG - 51328:10221-10240 MS.gene001374:intergenic 45.0%
! ACGCCTTCTTTTGGTAGGAT+TGG - 51328:10491-10510 MS.gene001374:intergenic 45.0%
! CCTTCTTTTGGTAGGATTGG+TGG - 51328:10488-10507 MS.gene001374:intergenic 45.0%
! GAGATATGATGGGAGTTGTC+AGG + 51328:8342-8361 MS.gene001374:intron 45.0%
! GATGCTGCTTATGGTAGTCT+TGG - 51328:9181-9200 MS.gene001374:intergenic 45.0%
! GTATCACGCCTTCTTTTGGT+AGG - 51328:10496-10515 MS.gene001374:intergenic 45.0%
!! AAATTGTTTTGCCCTTGGGC+TGG + 51328:10878-10897 MS.gene001374:intron 45.0%
!! CAAGGGGCACCTAGTTAATT+TGG - 51328:10667-10686 MS.gene001374:intergenic 45.0%
!! CCATGTGGGTTTTATCCACA+GGG - 51328:8714-8733 MS.gene001374:intergenic 45.0%
!! CTCCTCTAGGACAAATCGTT+TGG - 51328:10247-10266 MS.gene001374:intergenic 45.0%
!! CTCTTAATTTGCCTGTTGCG+TGG + 51328:9653-9672 MS.gene001374:intron 45.0%
!! CTTCCATTTTTCCTGGTTCC+TGG - 51328:10400-10419 MS.gene001374:intergenic 45.0%
!! GTAGTTGGGTTGTTGCTTTC+TGG - 51328:9542-9561 MS.gene001374:intergenic 45.0%
!! GATTATTAATAAAAAAAAAT+TGG + 51328:10107-10126 MS.gene001374:intron 5.0%
!!! TAAAATTTATACTTTTTTTA+AGG - 51328:8190-8209 MS.gene001374:intergenic 5.0%
AAAGCTCGCATGCCATCAAC+AGG - 51328:7677-7696 MS.gene001374:intergenic 50.0%
AATCCAGAGTTCGGTCTCGA+AGG + 51328:10168-10187 MS.gene001374:intron 50.0%
ACTTATACAGGTCCGGTCGA+AGG + 51328:10704-10723 MS.gene001374:intron 50.0%
AGGAGTAGAGCACAGAACAG+TGG + 51328:7268-7287 MS.gene001374:CDS 50.0%
CAACAACCAAGAAGCTGCTG+AGG + 51328:11343-11362 MS.gene001374:CDS 50.0%
CATGAGCAACGAGGAAGACT+TGG - 51328:7547-7566 MS.gene001374:intergenic 50.0%
CCCTGTGGATAAAACCCACA+TGG + 51328:8711-8730 MS.gene001374:intron 50.0%
CCTGTTGTCCTGTTCCTTCA+CGG + 51328:7338-7357 MS.gene001374:CDS 50.0%
CTTCACCAAGGAAAACCCTG+TGG + 51328:8696-8715 MS.gene001374:intron 50.0%
CTTCCTCGTTGCTCATGACT+GGG + 51328:7550-7569 MS.gene001374:CDS 50.0%
CTTGGTCCAGCTTCTTGTGA+TGG - 51328:9163-9182 MS.gene001374:intergenic 50.0%
GAGATCAGGTTCCTTCACCA+AGG + 51328:8684-8703 MS.gene001374:intron 50.0%
GGGTGAGACGAGAGATATGA+TGG + 51328:8331-8350 MS.gene001374:intron 50.0%
GTGCCAGGAACCAGGAAAAA+TGG + 51328:10394-10413 MS.gene001374:intron 50.0%
GTGCCAGTGAAGTTCATCAC+AGG + 51328:11203-11222 MS.gene001374:CDS 50.0%
TCTTCCTCGTTGCTCATGAC+TGG + 51328:7549-7568 MS.gene001374:CDS 50.0%
TTACCTTCGAGACCGAACTC+TGG - 51328:10174-10193 MS.gene001374:intergenic 50.0%
TTCCTCGTTGCTCATGACTG+GGG + 51328:7551-7570 MS.gene001374:CDS 50.0%
TTCGACCGGACCTGTATAAG+TGG - 51328:10705-10724 MS.gene001374:intergenic 50.0%
TTGTGAGAGCCAAGAAGGGA+GGG - 51328:10546-10565 MS.gene001374:intergenic 50.0%
! CACAGGGTTTTCCTTGGTGA+AGG - 51328:8698-8717 MS.gene001374:intergenic 50.0%
! TTTTCCTGGTTCCTGGCACA+TGG - 51328:10393-10412 MS.gene001374:intergenic 50.0%
!! CCCATGTGGGTTTTATCCAC+AGG - 51328:8715-8734 MS.gene001374:intergenic 50.0%
!! CGCCAAGAGTACCAAAGTTC+AGG - 51328:7368-7387 MS.gene001374:intergenic 50.0%
!! GATGGCATGCGAGCTTTGTT+TGG + 51328:7680-7699 MS.gene001374:CDS 50.0%
!! GTTGCTCTCATCGACTCACT+CGG + 51328:7515-7534 MS.gene001374:CDS 50.0%
AGCAACAGCACGGTAACCGA+GGG - 51328:7414-7433 MS.gene001374:intergenic 55.0%
ATTGGGAGCTCACTGCAGCA+TGG + 51328:11162-11181 MS.gene001374:CDS 55.0%
CAATCCATGTGCCAGGAACC+AGG + 51328:10386-10405 MS.gene001374:intron 55.0%
CAGGAAAGCCGTGAAGGAAC+AGG - 51328:7349-7368 MS.gene001374:intergenic 55.0%
CCCAGGTTTGAACCTTCGAC+CGG - 51328:10719-10738 MS.gene001374:intergenic 55.0%
CCGGTCGAAGGTTCAAACCT+GGG + 51328:10716-10735 MS.gene001374:intron 55.0%
CCGTGAAGGAACAGGACAAC+AGG - 51328:7341-7360 MS.gene001374:intergenic 55.0%
CTTCATAGCCTGCTTGACCC+AGG - 51328:10736-10755 MS.gene001374:intergenic 55.0%
CTTGTGAGAGCCAAGAAGGG+AGG - 51328:10547-10566 MS.gene001374:intergenic 55.0%
GCTCCAGATCTCCGTGGATA+CGG + 51328:7431-7450 MS.gene001374:CDS 55.0%
GGTTCAAACCTGGGTCAAGC+AGG + 51328:10725-10744 MS.gene001374:intron 55.0%
GTACAAAGGCCCTCCCTTCT+TGG + 51328:10534-10553 MS.gene001374:CDS 55.0%
TCACCGTATCCACGGAGATC+TGG - 51328:7437-7456 MS.gene001374:intergenic 55.0%
TCCGGTCGAAGGTTCAAACC+TGG + 51328:10715-10734 MS.gene001374:intron 55.0%
! ACTGGGGTGCCATGATTGGT+TGG + 51328:7567-7586 MS.gene001374:CDS 55.0%
! CATGACTGGGGTGCCATGAT+TGG + 51328:7563-7582 MS.gene001374:CDS 55.0%
! GGAGATCTGGAGCAACAGCA+CGG - 51328:7424-7443 MS.gene001374:intergenic 55.0%
!! CATCGGTGTCACCGTATCCA+CGG - 51328:7445-7464 MS.gene001374:intergenic 55.0%
CACCCCAGTCATGAGCAACG+AGG - 51328:7556-7575 MS.gene001374:intergenic 60.0%
CTCTTGGCGCCACCAGATTG+CGG + 51328:7379-7398 MS.gene001374:CDS 60.0%
GAGCAACAGCACGGTAACCG+AGG - 51328:7415-7434 MS.gene001374:intergenic 60.0%
GAGCTCACTGCAGCATGGAC+TGG + 51328:11167-11186 MS.gene001374:CDS 60.0%
GCTGTTGCTCCAGATCTCCG+TGG + 51328:7425-7444 MS.gene001374:CDS 60.0%
ACAAGTGCAGGGCCAGCCCA+AGG - 51328:10893-10912 MS.gene001374:intergenic 65.0%
AGCCGAGAGCCGCAATCTGG+TGG - 51328:7391-7410 MS.gene001374:intergenic 65.0%
ATTGCGGCTCTCGGCTCCCT+CGG + 51328:7395-7414 MS.gene001374:CDS 65.0%
CAAGTGCAGGGCCAGCCCAA+GGG - 51328:10892-10911 MS.gene001374:intergenic 65.0%
CGCCACCAGATTGCGGCTCT+CGG + 51328:7386-7405 MS.gene001374:CDS 65.0%
GGGAGCCGAGAGCCGCAATC+TGG - 51328:7394-7413 MS.gene001374:intergenic 70.0%


Chromosome Type Strat End Strand Name
51328 gene 7263 11406 7263 ID=MS.gene001374
51328 mRNA 7263 11406 7263 ID=MS.gene001374.t1;Parent=MS.gene001374
51328 exon 7263 7730 7263 ID=MS.gene001374.t1.exon1;Parent=MS.gene001374.t1
51328 CDS 7263 7730 7263 ID=cds.MS.gene001374.t1;Parent=MS.gene001374.t1
51328 exon 10401 10645 10401 ID=MS.gene001374.t1.exon2;Parent=MS.gene001374.t1
51328 CDS 10401 10645 10401 ID=cds.MS.gene001374.t1;Parent=MS.gene001374.t1
51328 exon 11160 11406 11160 ID=MS.gene001374.t1.exon3;Parent=MS.gene001374.t1
51328 CDS 11160 11406 11160 ID=cds.MS.gene001374.t1;Parent=MS.gene001374.t1
Gene Sequence

>MS.gene001374

ATGGAAGGAGTAGAGCACAGAACAGTGGAAGTAAATGGAATCAAAATGCATATTGCTGAGAAAGGAAAAGAAGGACCTGTTGTCCTGTTCCTTCACGGCTTTCCTGAACTTTGGTACTCTTGGCGCCACCAGATTGCGGCTCTCGGCTCCCTCGGTTACCGTGCTGTTGCTCCAGATCTCCGTGGATACGGTGACACCGATGCTCCGACTTCAGTTAGTAGCTACACAATCTTCCATTTGGTAGGTGATATCGTTGCTCTCATCGACTCACTCGGCGTTGACCAAGTCTTCCTCGTTGCTCATGACTGGGGTGCCATGATTGGTTGGTATCTTTGTTTGTTTCGCCCTGAAAGAATCAAAGCTTATGTTTGTCTCAGTGTTCCGTATTTACCCAGAAACCCAAAAGTGAAACCTGTTGATGGCATGCGAGCTTTGTTTGGTGATGATTACTATATCTGCAGATTCCAGGTTCGTTTTCTTATATTCTTATTCTTATATGCTACGAATCAGTTACAGAATCAACTACCACTATTTCTGCTTGCATTATTACTCCCCTTTGAATCTGTCTAAGTTACTAATTAAACACATGATTTTGATTTGTACGTGGTAGACTTGGAATTACTGATGTGTTTCAACTTTTAATTTGTTCCTTTTAACTGCTCTTTTGACTTTAACCCTCTTCCTCTTTTTGGTTTTTTTTTTTTCCTTTCAGTTTAGACACTAATTAGGGAACGGAAGTAATTTTATTTTTATTTTCTACATGTAAAAAAATTCACATTCAATCAAACAATATAATGGTTATAATTGGTTGAGAGTGTAAAAGAGAGAGTATATTGTTTGATTTTAATGGGGAGAATTTATAAAAAAAATTAATTCTTATAAAAATTTTATATTATATTTAAATAAATAAAAACATATTCTACTCCTTAAAAAAAGTATAAATTTTAAATAAATACATATTATATTTTTTTAAAAGTATAAATTTTTAAATAATAAATGAATATTTTTCTCGTCTTAATCTCTTTACTTTGGGAGGAAGTTTGAATCTCTTATGCATACAAACAACGGGGGTGAGACGAGAGATATGATGGGAGTTGTCAGGAGAGAGATGATAATTAAGAGATATAAAAATGAATGATAATCAAGAGAGATAAAAATTATAGTAGTACAAAAATGAATGATAATTAAGAGAGATAAAAATGATAGTAGTACAAAAATGAATTTAGGTGGAAGATGATACAAAAAAGCCCTGTTGAAATGGAGATAAAATTGGCTCTAGAGTCCTCTTTTGAATTTCTTTTATTGAGCAATAGATTGCAAAAGTTATGGCATCTCAATTAGGTTGACATCTCATAATTAGTTTTCTCTTTTGCTCCTGCTCTAAAAAGTTTATTAATAAAGAAAATGAAAAAGTACAACTTGAGATCAGGTTCCTTCACCAAGGAAAACCCTGTGGATAAAACCCACATGGGAAAAAAAAGTGTAAAGTTTACAATAGTAGAAACCAACATCAGCACAATCTATACAAGTGTAAACCTAATCTATTACGATGAAAAACATCCTTAATAGAATCTGACATGATATCCCGTCAAGTGTGACTAGTGATAGAAATACCAATATTAGGAGTAGGATCACCACAACAATTTCCTTATGTGTAAATGTGAGTGACCTTGAAGTCATATTTCTAAGCAAATCCAAACAGTTTTCCCAACAATTATATAAACTTCAAGGAATGATCTTAGACTACATAAAAGTAAGCCAAAGATAACTCCAACCTTTCTCATGAGCTAGCTCAATAGCAAGAATAATGCTCATAATTTTAATATTCAAAGCGTACGAAATACCAATATTATAAGCAAAACAACCAAGAAAATTAGTTTCGTAATCTCTAAACATTCCATCACAAGAAGCTGGACCAAGACTACCATAAGCAGCATCATCAGTGTTACATTTAATTCAGGGATAAGTCGGAGGGAGCCGCATCACCTCTTTGATCTTAGGAGCATTAGAGGATGAATTTTAACAGTGAACACGTTAGGGATCATAAAATCAATATTAGTGTAATTACCACTCAAAAAAAACATTTGAAATAGTAGTAGTATTGATTGAAAATTTGAAATCTCAAGAAATAAGATTGTCCTAGAACCTGCACATGTTTCAAACCATTAAAATTTTTGATCTATCTCCTCCTTTTAACCAATTGAACCATTTTTTGTTCTGCACACTTAGGAATTAGGATTTACTAGGAATTAGGACTATTGTTGAATTTTATTAATCCAGAAAGCAACAACCCAACTACTTGTAATTATTGCTTCTTCCAAAATCCTATTTCTCTAGTTTCAAAACGTGGTTTGTGTTTGTTTTCCAAAAATGGCGTTGCGACAATATGCCTCTTAATTTGCCTGTTGCGTGGGATTTTGATTTTTGGGTGTGGTCAATTTAAGTACAATAATAATAGTATATCTCGTTTTCCTTACGGCTCTTTCCCCATTTATTTGAAATAGATGATAGGCCGGATAAAAACTTGATTCAGAGAATATCCAATTTGGTATGGGTTTAATCAAAATGTTAGATTTTTAACTTGGTTAAATAAATAGAGATTGTTGTGTTGCCTTGTAAAATTTGCAAATGCTTATGAATAATCACGATGGAATACATAATTTTAGTTAGTGCAAAGCAACGTGTAACTGACGAAAATGGTACTAATTGAAAATAGACGCACATTGAACAAGACTTTGAGAAAGTTGTTGATTGGTATATGATGTTTTAATTCTATTATATGATATAGTATATTAATCCTACATAACTAAACCATGTGTGTCCTTTAAAAATTTGTGGAATTTAGATTATTAATAAAAAAAAATTGGTTTTAACCCTTAGGTTTGTAGGGGAAATGAGTCTTAGTAATCCAGAGTTCGGTCTCGAAGGTAAGTAAAGTCTGGTCAAGAATTGTTTCCGCCAGAAATCGAACTCGGTTTCTCCCAAACGATTTGTCCTAGAGGAGCTCATTAACCATTGAGCTCAATCACTTGGTTTGGAATTTAGATAATTTTAATCAATAAAAAAATGTGTGTTAAAATGTGCATTAAAGAGTGTGTTGTTCAAATTACTCTAATCGAATATCAATCCATGTGCCAGGAACCAGGAAAAATGGAAGCTGAATTTGCGAAAGGTGGCCCAGAACTGCTGATCAAGAACATGCTTACAAATAGGAATTCTGGGCCACCAATCCTACCAAAAGAAGGCGTGATACCTAATCCACATGCTTCAAGTACAAAGGCCCTCCCTTCTTGGCTCTCACAAGAAGATATCACTTACTATGCTTCTAAATTTGAAAAGACAGGATTCAGTGGTGCCCTTAACTACTATAGAAATCTCAACTTGTAAGTACTGTCATTTTTCCAAATTAACTAGGTGCCCCTTGTGCATCATTCACGTACCACTTATACAGGTCCGGTCGAAGGTTCAAACCTGGGTCAAGCAGGCTATGAAGCCCTCTTCTTGACTAACTAAATTGGACGAACATCTGTCATATTATATATTTATAACAAAATTAAAAAAAAAAAACTGAACTATTTTTGTTACTCAAAATGTTGAGACCTAAAACCCTAACTTAAATTGTTTTGCCCTTGGGCTGGCCCTGCACTTGTATTTCTATTTGATCTTATATGAAAATGAATAATTTAGTTGCAGTTTTAGTCCTTCAGATGTTACAATCCTTGAATTTTGATATCACATTTCAAATATGTAATACTTGATTGTAGCAATTTAAAAGCTTAGTTTTCAAAATTGTACAATCTTAATAGAACTAACATAGTAACATGTATAATTTAAGTTCTATATCCAAATGTTGTATTTGTTAATAGAATATGCTAATGTAGTGTATCATATATACAGAAATTGGGAGCTCACTGCAGCATGGACTGGAGCAAAAATTAAGGTGCCAGTGAAGTTCATCACAGGTGATTTAGATGCAGTTTACACTTCATTTGGTACAAAGCAATACATCGAGAGTGGAGGTTTTAAGAAAGATGTGCCAAATTTGGAGGAAGTTGTTATACAGGAAGGTGTGGCTCACTTCAACAACCAAGAAGCTGCTGAGGATATCAGCAATCACATTTACGATTTTATCAAGAAATTCTGA

Protein sequence

>MS.gene001374.t1

MEGVEHRTVEVNGIKMHIAEKGKEGPVVLFLHGFPELWYSWRHQIAALGSLGYRAVAPDLRGYGDTDAPTSVSSYTIFHLVGDIVALIDSLGVDQVFLVAHDWGAMIGWYLCLFRPERIKAYVCLSVPYLPRNPKVKPVDGMRALFGDDYYICRFQEPGKMEAEFAKGGPELLIKNMLTNRNSGPPILPKEGVIPNPHASSTKALPSWLSQEDITYYASKFEKTGFSGALNYYRNLNLNWELTAAWTGAKIKVPVKFITGDLDAVYTSFGTKQYIESGGFKKDVPNLEEVVIQEGVAHFNNQEAAEDISNHIYDFIKKF