Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001375.t1 | XP_013450482.1 | 88.8 | 303 | 24 | 1 | 1 | 293 | 1 | 303 | 2.40E-153 | 551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001375.t1 | I6YGS0 | 38.8 | 309 | 159 | 10 | 7 | 295 | 7 | 305 | 2.1e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001375.t1 | A0A072UFD9 | 88.8 | 303 | 24 | 1 | 1 | 293 | 1 | 303 | 1.7e-153 | 551.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001375 | MS.gene041604 | PPI |
| MS.gene012063 | MS.gene001375 | PPI |
| MS.gene76453 | MS.gene001375 | PPI |
| MS.gene001375 | MS.gene22955 | PPI |
| MS.gene025707 | MS.gene001375 | PPI |
| MS.gene035373 | MS.gene001375 | PPI |
| MS.gene001375 | MS.gene07001 | PPI |
| MS.gene001375 | MS.gene035371 | PPI |
| MS.gene77823 | MS.gene001375 | PPI |
| MS.gene035367 | MS.gene001375 | PPI |
| MS.gene071504 | MS.gene001375 | PPI |
| MS.gene001375 | MS.gene066361 | PPI |
| MS.gene071502 | MS.gene001375 | PPI |
| MS.gene066360 | MS.gene001375 | PPI |
| MS.gene89620 | MS.gene001375 | PPI |
| MS.gene001375 | MS.gene071500 | PPI |
| MS.gene035369 | MS.gene001375 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001375.t1 | MTR_7g112963 | 88.779 | 303 | 24 | 1 | 1 | 293 | 1 | 303 | 0.0 | 548 |
| MS.gene001375.t1 | MTR_7g112960 | 84.158 | 303 | 38 | 1 | 1 | 293 | 1 | 303 | 0.0 | 525 |
| MS.gene001375.t1 | MTR_7g112970 | 82.508 | 303 | 40 | 2 | 1 | 293 | 1 | 300 | 0.0 | 506 |
| MS.gene001375.t1 | MTR_7g113010 | 81.139 | 281 | 43 | 1 | 1 | 271 | 1 | 281 | 1.44e-167 | 478 |
| MS.gene001375.t1 | MTR_7g113020 | 72.607 | 303 | 73 | 1 | 1 | 293 | 1 | 303 | 2.05e-161 | 453 |
| MS.gene001375.t1 | MTR_7g112620 | 70.957 | 303 | 78 | 1 | 1 | 293 | 1 | 303 | 1.01e-157 | 444 |
| MS.gene001375.t1 | MTR_7g113050 | 71.148 | 305 | 74 | 3 | 1 | 293 | 1 | 303 | 1.30e-156 | 441 |
| MS.gene001375.t1 | MTR_7g113030 | 69.967 | 303 | 81 | 1 | 1 | 293 | 1 | 303 | 2.42e-156 | 440 |
| MS.gene001375.t1 | MTR_7g112615 | 69.637 | 303 | 82 | 1 | 1 | 293 | 1 | 303 | 2.83e-154 | 435 |
| MS.gene001375.t1 | MTR_4g005160 | 61.165 | 309 | 101 | 6 | 1 | 293 | 1 | 306 | 1.31e-131 | 377 |
| MS.gene001375.t1 | MTR_4g120240 | 58.252 | 309 | 115 | 4 | 1 | 297 | 37 | 343 | 3.71e-127 | 367 |
| MS.gene001375.t1 | MTR_7g108825 | 56.818 | 308 | 119 | 4 | 1 | 297 | 1 | 305 | 3.41e-121 | 351 |
| MS.gene001375.t1 | MTR_7g113050 | 71.250 | 240 | 55 | 3 | 1 | 228 | 1 | 238 | 2.43e-118 | 340 |
| MS.gene001375.t1 | MTR_7g112615 | 69.748 | 238 | 62 | 1 | 1 | 228 | 1 | 238 | 2.82e-117 | 338 |
| MS.gene001375.t1 | MTR_8g076680 | 44.207 | 328 | 159 | 6 | 1 | 314 | 3 | 320 | 6.61e-92 | 276 |
| MS.gene001375.t1 | MTR_7g108825 | 56.485 | 239 | 90 | 4 | 1 | 228 | 1 | 236 | 1.75e-87 | 262 |
| MS.gene001375.t1 | MTR_7g112615 | 73.714 | 175 | 33 | 2 | 1 | 162 | 1 | 175 | 1.72e-85 | 255 |
| MS.gene001375.t1 | MTR_1g083480 | 67.925 | 159 | 37 | 3 | 1 | 146 | 1 | 158 | 1.91e-70 | 216 |
| MS.gene001375.t1 | MTR_8g076680 | 44.215 | 242 | 115 | 4 | 1 | 228 | 3 | 238 | 9.00e-70 | 217 |
| MS.gene001375.t1 | MTR_4g089060 | 35.484 | 310 | 175 | 8 | 1 | 297 | 1 | 298 | 9.94e-57 | 186 |
| MS.gene001375.t1 | MTR_2g090245 | 34.796 | 319 | 181 | 9 | 1 | 303 | 1 | 308 | 1.22e-56 | 186 |
| MS.gene001375.t1 | MTR_2g090240 | 34.796 | 319 | 181 | 8 | 1 | 303 | 1 | 308 | 5.14e-56 | 184 |
| MS.gene001375.t1 | MTR_4g089040 | 34.839 | 310 | 177 | 8 | 1 | 297 | 1 | 298 | 1.86e-54 | 180 |
| MS.gene001375.t1 | MTR_7g112910 | 46.222 | 225 | 72 | 7 | 72 | 293 | 1 | 179 | 8.54e-54 | 174 |
| MS.gene001375.t1 | MTR_4g089060 | 32.938 | 337 | 174 | 9 | 1 | 297 | 1 | 325 | 1.37e-51 | 174 |
| MS.gene001375.t1 | MTR_4g089060 | 36.910 | 233 | 128 | 5 | 1 | 221 | 1 | 226 | 6.58e-48 | 160 |
| MS.gene001375.t1 | MTR_3g024250 | 67.925 | 106 | 24 | 1 | 47 | 142 | 2 | 107 | 4.25e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001375.t1 | AT3G05600 | 59.744 | 313 | 109 | 5 | 1 | 297 | 1 | 312 | 4.36e-134 | 384 |
| MS.gene001375.t1 | AT4G02340 | 57.516 | 306 | 115 | 4 | 1 | 295 | 1 | 302 | 1.22e-125 | 362 |
| MS.gene001375.t1 | AT4G15960 | 51.768 | 311 | 133 | 4 | 1 | 295 | 51 | 360 | 2.04e-112 | 331 |
| MS.gene001375.t1 | AT2G26740 | 56.129 | 310 | 119 | 5 | 4 | 297 | 1 | 309 | 1.54e-108 | 319 |
| MS.gene001375.t1 | AT2G26750 | 54.693 | 309 | 124 | 5 | 4 | 297 | 1 | 308 | 3.03e-105 | 310 |
| MS.gene001375.t1 | AT3G05600 | 61.066 | 244 | 78 | 5 | 1 | 228 | 1 | 243 | 3.14e-101 | 297 |
| MS.gene001375.t1 | AT4G15955 | 48.232 | 311 | 115 | 6 | 5 | 295 | 6 | 290 | 1.41e-92 | 278 |
| MS.gene001375.t1 | AT3G51000 | 46.205 | 303 | 146 | 7 | 4 | 293 | 5 | 303 | 3.42e-88 | 267 |
| MS.gene001375.t1 | AT4G15955 | 54.023 | 174 | 60 | 3 | 4 | 157 | 5 | 178 | 2.00e-59 | 189 |
| MS.gene001375.t1 | AT4G15955 | 51.724 | 174 | 64 | 3 | 4 | 157 | 5 | 178 | 2.50e-55 | 178 |
Find 88 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.1:+2804 | MS.gene001375:CDS |
| ATAACCACTTCCTCCAAATT+TGG | 0.220764 | 7.1:-2817 | None:intergenic |
| CCATCAACAGGTTTCACTTT+TGG | 0.231114 | 7.1:-1019 | None:intergenic |
| ATGAGATAATATGCCTTCTT+TGG | 0.231977 | 7.1:-1944 | None:intergenic |
| TGATTTCCTCGGCAGCTTCT+TGG | 0.237229 | 7.1:-2866 | None:intergenic |
| GATTTAGTTTACACTTCTTT+TGG | 0.261386 | 7.1:+2751 | MS.gene001375:CDS |
| CGCCACCAGATTGCTGCTCT+TGG | 0.265149 | 7.1:+742 | MS.gene001375:CDS |
| GTGACAGGAACCCGGGAAAA+TGG | 0.290473 | 7.1:+1840 | MS.gene001375:intron |
| GTACAATGCCCCTCCCTTCC+TGG | 0.297800 | 7.1:+1980 | MS.gene001375:CDS |
| CTTCCTTGTAGCTCATGATT+GGG | 0.316992 | 7.1:+906 | MS.gene001375:CDS |
| GAAGATTGTGTAACTACTAA+TGG | 0.366861 | 7.1:-830 | None:intergenic |
| TCTTCCTTGTAGCTCATGAT+TGG | 0.373039 | 7.1:+905 | MS.gene001375:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.1:-721 | None:intergenic |
| CCAAAAGTGAAACCTGTTGA+TGG | 0.389532 | 7.1:+1019 | MS.gene001375:CDS |
| TCGCCGTAACCACGGAGATC+TGG | 0.394426 | 7.1:-790 | None:intergenic |
| TTTGAAAAGACAGGATTTAG+TGG | 0.395852 | 7.1:+2039 | MS.gene001375:CDS |
| ATGCCTTCTTTGGGCAGGAT+TGG | 0.397843 | 7.1:-1934 | None:intergenic |
| TTTGGATTTCTGGGTAAATA+CGG | 0.407798 | 7.1:-1001 | None:intergenic |
| CCTTCTTTGGGCAGGATTGG+TGG | 0.408975 | 7.1:-1931 | None:intergenic |
| ACCGCTCTCGATGTATTGTT+TGG | 0.413172 | 7.1:-2776 | None:intergenic |
| TTATTATATCTGCAGATTCC+AGG | 0.414957 | 7.1:+1066 | MS.gene001375:CDS |
| GCTTCCAAATTTGAAAAGAC+AGG | 0.423519 | 7.1:+2030 | MS.gene001375:CDS |
| GAAGTTCATCATAGGTGATC+TGG | 0.427789 | 7.1:+2729 | MS.gene001375:CDS |
| TGAGATAATATGCCTTCTTT+GGG | 0.432022 | 7.1:-1943 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.1:+719 | MS.gene001375:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.436037 | 7.1:+919 | MS.gene001375:CDS |
| GACATCTTCTTGCGAGAGCC+AGG | 0.445878 | 7.1:-1998 | None:intergenic |
| GCTCCAGATCTCCGTGGTTA+CGG | 0.448429 | 7.1:+787 | MS.gene001375:CDS |
| TAGTTACACAATCTTCCATT+TGG | 0.454984 | 7.1:+837 | MS.gene001375:CDS |
| ATGCTTACAAGTCGTAATCC+TGG | 0.458065 | 7.1:+1907 | MS.gene001375:CDS |
| GGGAGCCAAGAGCAGCAATC+TGG | 0.464162 | 7.1:-747 | None:intergenic |
| ACAGCTCGCATTCCATCAAC+AGG | 0.466950 | 7.1:-1031 | None:intergenic |
| CCACCAATCCTGCCCAAAGA+AGG | 0.467921 | 7.1:+1931 | MS.gene001375:CDS |
| ATTGCTGCTCTTGGCTCCCT+CGG | 0.472828 | 7.1:+751 | MS.gene001375:CDS |
| GAGCTCACGGCAGCATGGAC+CGG | 0.477692 | 7.1:+2685 | MS.gene001375:CDS |
| TTGGGCAGGATTGGTGGCCC+AGG | 0.482553 | 7.1:-1925 | None:intergenic |
| GTACCAGTGAAGTTCATCAT+AGG | 0.483596 | 7.1:+2721 | MS.gene001375:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.1:+661 | MS.gene001375:CDS |
| CAACGATGTCACCCACCAAA+TGG | 0.489958 | 7.1:-852 | None:intergenic |
| TGCGAGAGCCAGGAAGGGAG+GGG | 0.493557 | 7.1:-1988 | None:intergenic |
| TGTGCCAAATTTGGAGGAAG+TGG | 0.500333 | 7.1:+2813 | MS.gene001375:CDS |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.1:+710 | MS.gene001375:CDS |
| ATAATATGCCTTCTTTGGGC+AGG | 0.504415 | 7.1:-1939 | None:intergenic |
| ATGGCCTTGATCAACAGTTC+TGG | 0.508152 | 7.1:-1886 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+AGG | 0.513488 | 7.1:-694 | None:intergenic |
| TGCTTACAAGTCGTAATCCT+GGG | 0.514561 | 7.1:+1908 | MS.gene001375:CDS |
| CAATCCATGTGACAGGAACC+CGG | 0.522947 | 7.1:+1832 | MS.gene001375:intron |
| GATGGAATGCGAGCTGTGTA+TGG | 0.523423 | 7.1:+1037 | MS.gene001375:CDS |
| TGGTACTTTAATTTGTGCTC+CGG | 0.523809 | 7.1:-2704 | None:intergenic |
| TACACAATCTTCCATTTGGT+GGG | 0.524970 | 7.1:+841 | MS.gene001375:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.1:+2807 | MS.gene001375:CDS |
| TTGCGAGAGCCAGGAAGGGA+GGG | 0.531398 | 7.1:-1989 | None:intergenic |
| GTGTAACTACTAATGGAAGC+TGG | 0.533389 | 7.1:-823 | None:intergenic |
| ACAAAGATACCAACCAATGA+TGG | 0.536291 | 7.1:-932 | None:intergenic |
| CACCCCAATCATGAGCTACA+AGG | 0.540560 | 7.1:-909 | None:intergenic |
| TTCCTTGTAGCTCATGATTG+GGG | 0.541290 | 7.1:+907 | MS.gene001375:CDS |
| TTACACAATCTTCCATTTGG+TGG | 0.541545 | 7.1:+840 | MS.gene001375:CDS |
| GGGCATTGTACTTGAAACAC+TGG | 0.545502 | 7.1:-1968 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.1:+670 | MS.gene001375:CDS |
| CTTGCGAGAGCCAGGAAGGG+AGG | 0.550388 | 7.1:-1990 | None:intergenic |
| GAGGAAGTGGTTATACAGAA+AGG | 0.551271 | 7.1:+2826 | MS.gene001375:CDS |
| AATCCATGTGACAGGAACCC+GGG | 0.551511 | 7.1:+1833 | MS.gene001375:intron |
| GTTGCTCTCATCGACTCACT+TGG | 0.552314 | 7.1:+871 | MS.gene001375:CDS |
| TCACCTATGATGAACTTCAC+TGG | 0.553123 | 7.1:-2724 | None:intergenic |
| ATGGAAGCTGAAATTGCTAA+AGG | 0.559276 | 7.1:+1859 | MS.gene001375:CDS |
| TAGTCCAGAACTGTTGATCA+AGG | 0.560762 | 7.1:+1882 | MS.gene001375:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.567993 | 7.1:+634 | MS.gene001375:CDS |
| AGCCAAGAGCAGCAATCTGG+TGG | 0.583237 | 7.1:-744 | None:intergenic |
| AATGTGATTACTGATTTCCT+CGG | 0.590060 | 7.1:-2877 | None:intergenic |
| TCTTCTTGCGAGAGCCAGGA+AGG | 0.593368 | 7.1:-1994 | None:intergenic |
| ACTAATGGAAGCTGGAGCAT+CGG | 0.595210 | 7.1:-815 | None:intergenic |
| CATCGGTGTCGCCGTAACCA+CGG | 0.597704 | 7.1:-798 | None:intergenic |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.611461 | 7.1:+2680 | MS.gene001375:CDS |
| GAAAAGACAGGATTTAGTGG+TGG | 0.611798 | 7.1:+2042 | MS.gene001375:CDS |
| TAACAGAAATTGGGAGCTCA+CGG | 0.614147 | 7.1:+2672 | MS.gene001375:intron |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.1:-708 | None:intergenic |
| AGGATTACGACTTGTAAGCA+TGG | 0.633672 | 7.1:-1905 | None:intergenic |
| TCACAACCAAGAAGCTGCCG+AGG | 0.638753 | 7.1:+2860 | MS.gene001375:CDS |
| GGCATTGTACTTGAAACACT+GGG | 0.645498 | 7.1:-1967 | None:intergenic |
| CTTCTTGCGAGAGCCAGGAA+GGG | 0.648277 | 7.1:-1993 | None:intergenic |
| GAGCAACAGCACAGTAACCG+AGG | 0.650868 | 7.1:-768 | None:intergenic |
| GGAACACTGAGACAAAACAT+AGG | 0.655161 | 7.1:-980 | None:intergenic |
| AAACAATACATCGAGAGCGG+TGG | 0.675908 | 7.1:+2778 | MS.gene001375:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.1:+624 | MS.gene001375:CDS |
| AGCAACAGCACAGTAACCGA+GGG | 0.678247 | 7.1:-767 | None:intergenic |
| AGTGGTTATACAGAAAGGTG+TGG | 0.683843 | 7.1:+2831 | MS.gene001375:CDS |
| ACCAAACAATACATCGAGAG+CGG | 0.693164 | 7.1:+2775 | MS.gene001375:CDS |
| GCTGTTGCTCCAGATCTCCG+TGG | 0.735697 | 7.1:+781 | MS.gene001375:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAATTCTTAAAA+TGG | - | chr7.1:1493-1512 | None:intergenic | 10.0% |
| !! | AATTAAATCCTAAATTCATT+TGG | + | chr7.1:1552-1571 | MS.gene001375:intron | 15.0% |
| !!! | TTAGGATTTAATTTTATGTA+CGG | - | chr7.1:1545-1564 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTGATAAATAAA+TGG | + | chr7.1:1599-1618 | MS.gene001375:intron | 15.0% |
| !! | ATGAGTTTAATCTAAACTTT+AGG | + | chr7.1:1576-1595 | MS.gene001375:intron | 20.0% |
| !! | TAATCAATAAGCTCAAATTA+CGG | - | chr7.1:1296-1315 | None:intergenic | 20.0% |
| !! | TATAAATTACAAGAGAATGA+TGG | - | chr7.1:2153-2172 | None:intergenic | 20.0% |
| !! | TTATAATAATTGCTGAGATA+AGG | + | chr7.1:2396-2415 | MS.gene001375:intron | 20.0% |
| !!! | AGACATTTTAAGTTTTTCTT+TGG | - | chr7.1:1353-1372 | None:intergenic | 20.0% |
| !!! | GTTATACACTAACTAAATTT+TGG | - | chr7.1:1664-1683 | None:intergenic | 20.0% |
| !!! | GTTTTATGTTAACAGAAATT+GGG | + | chr7.1:2663-2682 | MS.gene001375:intron | 20.0% |
| !!! | TGTTTTATGTTAACAGAAAT+TGG | + | chr7.1:2662-2681 | MS.gene001375:intron | 20.0% |
| !!! | TTAACATAAAACAAAAGCAT+TGG | - | chr7.1:2655-2674 | None:intergenic | 20.0% |
| !!! | TTTTAAAATCAAGGATTATG+AGG | - | chr7.1:2353-2372 | None:intergenic | 20.0% |
| ! | AACTCATACCAAATGAATTT+AGG | - | chr7.1:1563-1582 | None:intergenic | 25.0% |
| ! | ACAATCTTAAATTTGATGGA+AGG | + | chr7.1:2574-2593 | MS.gene001375:intron | 25.0% |
| ! | ATTGGATTACAAATTTGACA+AGG | - | chr7.1:1640-1659 | None:intergenic | 25.0% |
| ! | ATTTATACAAAACCAATCCA+AGG | + | chr7.1:2166-2185 | MS.gene001375:intron | 25.0% |
| ! | CAAAAACCAAAAGATAAAGT+GGG | - | chr7.1:1273-1292 | None:intergenic | 25.0% |
| ! | GATTAATTCTACTTGAACTA+TGG | + | chr7.1:1137-1156 | MS.gene001375:intron | 25.0% |
| ! | GGTTCAAACAAATATCTATA+TGG | - | chr7.1:1472-1491 | None:intergenic | 25.0% |
| ! | TAAAATGAAAAATACGAACC+TGG | - | chr7.1:1087-1106 | None:intergenic | 25.0% |
| ! | TCTGACAATCTTAAATTTGA+TGG | + | chr7.1:2570-2589 | MS.gene001375:intron | 25.0% |
| ! | TGAACTTGATAAATAAATGG+AGG | + | chr7.1:1602-1621 | MS.gene001375:intron | 25.0% |
| !! | AAATCCTGTCTTTTCAAATT+TGG | - | chr7.1:2037-2056 | None:intergenic | 25.0% |
| !! | CATCTAGTTAATTTGGAAAA+AGG | - | chr7.1:2122-2141 | None:intergenic | 25.0% |
| !! | TGAGCTTATTGATTATAAAG+TGG | + | chr7.1:1301-1320 | MS.gene001375:intron | 25.0% |
| !!! | AAGTTTTAGTTTTTTGCTTG+TGG | + | chr7.1:1188-1207 | MS.gene001375:intron | 25.0% |
| !!! | CACTAACTAAATTTTGGTAT+TGG | - | chr7.1:1658-1677 | None:intergenic | 25.0% |
| !!! | GATTTAGTTTACACTTCTTT+TGG | + | chr7.1:2751-2770 | MS.gene001375:CDS | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | + | chr7.1:661-680 | MS.gene001375:CDS | 30.0% | |
| ATGAGATAATATGCCTTCTT+TGG | - | chr7.1:1947-1966 | None:intergenic | 30.0% | |
| CAAGAGACATCTAGTTAATT+TGG | - | chr7.1:2129-2148 | None:intergenic | 30.0% | |
| GAAGATTGTGTAACTACTAA+TGG | - | chr7.1:833-852 | None:intergenic | 30.0% | |
| GCAAAAACCAAAAGATAAAG+TGG | - | chr7.1:1274-1293 | None:intergenic | 30.0% | |
| TAGTTACACAATCTTCCATT+TGG | + | chr7.1:837-856 | MS.gene001375:CDS | 30.0% | |
| TGAGATAATATGCCTTCTTT+GGG | - | chr7.1:1946-1965 | None:intergenic | 30.0% | |
| TTATATCATGAGTGATGTGT+AGG | - | chr7.1:2456-2475 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | + | chr7.1:1066-1085 | MS.gene001375:CDS | 30.0% | |
| TTGATAAATAAATGGAGGAC+TGG | + | chr7.1:1607-1626 | MS.gene001375:intron | 30.0% | |
| TTTGAAAAGACAGGATTTAG+TGG | + | chr7.1:2039-2058 | MS.gene001375:CDS | 30.0% | |
| ! | AGATTGTCAGATGATTTTGA+AGG | - | chr7.1:2561-2580 | None:intergenic | 30.0% |
| ! | TAAATAAGACTCTGAGAAGT+TGG | + | chr7.1:1751-1770 | MS.gene001375:intron | 30.0% |
| ! | TATTCACCCACTTTATCTTT+TGG | + | chr7.1:1264-1283 | MS.gene001375:intron | 30.0% |
| ! | TTTGGATTTCTGGGTAAATA+CGG | - | chr7.1:1004-1023 | None:intergenic | 30.0% |
| !! | AATGTGATTACTGATTTCCT+CGG | - | chr7.1:2880-2899 | None:intergenic | 30.0% |
| !!! | GTTTTTTGCTTGTGGTATAA+TGG | + | chr7.1:1196-1215 | MS.gene001375:intron | 30.0% |
| AATTATGCAACGCCAACTTA+AGG | - | chr7.1:2282-2301 | None:intergenic | 35.0% | |
| ACAAAGATACCAACCAATGA+TGG | - | chr7.1:935-954 | None:intergenic | 35.0% | |
| ATAACCACTTCCTCCAAATT+TGG | - | chr7.1:2820-2839 | None:intergenic | 35.0% | |
| ATGGAAGCTGAAATTGCTAA+AGG | + | chr7.1:1859-1878 | MS.gene001375:CDS | 35.0% | |
| ATGTACGGTGTATAATCAAG+AGG | - | chr7.1:1530-1549 | None:intergenic | 35.0% | |
| ATTATGCAACGCCAACTTAA+GGG | - | chr7.1:2281-2300 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | chr7.1:670-689 | MS.gene001375:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | + | chr7.1:2804-2823 | MS.gene001375:CDS | 35.0% | |
| GCTTCCAAATTTGAAAAGAC+AGG | + | chr7.1:2030-2049 | MS.gene001375:CDS | 35.0% | |
| TACACAATCTTCCATTTGGT+GGG | + | chr7.1:841-860 | MS.gene001375:CDS | 35.0% | |
| TGGACATCTGTAACTAACTT+GGG | + | chr7.1:2247-2266 | MS.gene001375:intron | 35.0% | |
| TGGCGTTGCATAATTCTATT+TGG | + | chr7.1:2287-2306 | MS.gene001375:intron | 35.0% | |
| TTACACAATCTTCCATTTGG+TGG | + | chr7.1:840-859 | MS.gene001375:CDS | 35.0% | |
| ! | AATTTCAGCTTCCATTTTCC+CGG | - | chr7.1:1854-1873 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | chr7.1:967-986 | None:intergenic | 35.0% |
| ! | CAATTTGAAAGCATGTCTGA+CGG | - | chr7.1:2509-2528 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | chr7.1:966-985 | None:intergenic | 35.0% |
| ! | TTTTGCTTGTGGTATAATGG+AGG | + | chr7.1:1199-1218 | MS.gene001375:intron | 35.0% |
| !! | AGGTTTCACTTTTGGATTTC+TGG | - | chr7.1:1014-1033 | None:intergenic | 35.0% |
| !! | ATTCTCGTATTGACTAACTG+TGG | + | chr7.1:2220-2239 | MS.gene001375:intron | 35.0% |
| !! | GGTTTCACTTTTGGATTTCT+GGG | - | chr7.1:1013-1032 | None:intergenic | 35.0% |
| !! | TGGTACTTTAATTTGTGCTC+CGG | - | chr7.1:2707-2726 | None:intergenic | 35.0% |
| AATTGAAACCCAACAACCGA+AGG | + | chr7.1:1693-1712 | MS.gene001375:intron | 40.0% | |
| ACCAAACAATACATCGAGAG+CGG | + | chr7.1:2775-2794 | MS.gene001375:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | chr7.1:624-643 | MS.gene001375:CDS | 40.0% | |
| AGGATTACGACTTGTAAGCA+TGG | - | chr7.1:1908-1927 | None:intergenic | 40.0% | |
| AGTGGTTATACAGAAAGGTG+TGG | + | chr7.1:2831-2850 | MS.gene001375:CDS | 40.0% | |
| ATAATATGCCTTCTTTGGGC+AGG | - | chr7.1:1942-1961 | None:intergenic | 40.0% | |
| ATGCTTACAAGTCGTAATCC+TGG | + | chr7.1:1907-1926 | MS.gene001375:CDS | 40.0% | |
| CCAAAAGTGAAACCTGTTGA+TGG | + | chr7.1:1019-1038 | MS.gene001375:CDS | 40.0% | |
| CTTCCTTGTAGCTCATGATT+GGG | + | chr7.1:906-925 | MS.gene001375:CDS | 40.0% | |
| GAAAAGACAGGATTTAGTGG+TGG | + | chr7.1:2042-2061 | MS.gene001375:CDS | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | + | chr7.1:2807-2826 | MS.gene001375:CDS | 40.0% | |
| GAAGTTCATCATAGGTGATC+TGG | + | chr7.1:2729-2748 | MS.gene001375:CDS | 40.0% | |
| GAGGAAGTGGTTATACAGAA+AGG | + | chr7.1:2826-2845 | MS.gene001375:CDS | 40.0% | |
| GGAACACTGAGACAAAACAT+AGG | - | chr7.1:983-1002 | None:intergenic | 40.0% | |
| GGCATTGTACTTGAAACACT+GGG | - | chr7.1:1970-1989 | None:intergenic | 40.0% | |
| GTACCAGTGAAGTTCATCAT+AGG | + | chr7.1:2721-2740 | MS.gene001375:CDS | 40.0% | |
| GTGGACATCTGTAACTAACT+TGG | + | chr7.1:2246-2265 | MS.gene001375:intron | 40.0% | |
| GTGTAACTACTAATGGAAGC+TGG | - | chr7.1:826-845 | None:intergenic | 40.0% | |
| TAACAGAAATTGGGAGCTCA+CGG | + | chr7.1:2672-2691 | MS.gene001375:intron | 40.0% | |
| TAGTCCAGAACTGTTGATCA+AGG | + | chr7.1:1882-1901 | MS.gene001375:CDS | 40.0% | |
| TCACCTATGATGAACTTCAC+TGG | - | chr7.1:2727-2746 | None:intergenic | 40.0% | |
| TCTTCCTTGTAGCTCATGAT+TGG | + | chr7.1:905-924 | MS.gene001375:CDS | 40.0% | |
| TGCTTACAAGTCGTAATCCT+GGG | + | chr7.1:1908-1927 | MS.gene001375:CDS | 40.0% | |
| TTCCTTGTAGCTCATGATTG+GGG | + | chr7.1:907-926 | MS.gene001375:CDS | 40.0% | |
| TTCGGTTGTTGGGTTTCAAT+TGG | - | chr7.1:1694-1713 | None:intergenic | 40.0% | |
| ! | ACCATTTTCCTTCGGTTGTT+GGG | - | chr7.1:1704-1723 | None:intergenic | 40.0% |
| ! | ATTTCAGCTTCCATTTTCCC+GGG | - | chr7.1:1853-1872 | None:intergenic | 40.0% |
| ! | CAGCTAGTACCATTTTCCTT+CGG | - | chr7.1:1712-1731 | None:intergenic | 40.0% |
| ! | CCATCAACAGGTTTCACTTT+TGG | - | chr7.1:1022-1041 | None:intergenic | 40.0% |
| ! | TACCATTTTCCTTCGGTTGT+TGG | - | chr7.1:1705-1724 | None:intergenic | 40.0% |
| ! | TATTGACTAACTGTGGTGAG+TGG | + | chr7.1:2227-2246 | MS.gene001375:intron | 40.0% |
| !! | TCACATGGATTGGAATTGGA+TGG | - | chr7.1:1824-1843 | None:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | + | chr7.1:694-713 | MS.gene001375:CDS | 40.0% |
| AAACAATACATCGAGAGCGG+TGG | + | chr7.1:2778-2797 | MS.gene001375:CDS | 45.0% | |
| ACCCAACAACCGAAGGAAAA+TGG | + | chr7.1:1700-1719 | MS.gene001375:intron | 45.0% | |
| ACCGCTCTCGATGTATTGTT+TGG | - | chr7.1:2779-2798 | None:intergenic | 45.0% | |
| ACTAATGGAAGCTGGAGCAT+CGG | - | chr7.1:818-837 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr7.1:634-653 | MS.gene001375:CDS | 45.0% | |
| CATATTCTCCATGACCGAGA+GGG | - | chr7.1:2198-2217 | None:intergenic | 45.0% | |
| CCAATTCCAATCCATGTGAC+AGG | + | chr7.1:1825-1844 | MS.gene001375:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | - | chr7.1:697-716 | None:intergenic | 45.0% | |
| GGGTTGTTTGACCCTTAAGT+TGG | + | chr7.1:2267-2286 | MS.gene001375:intron | 45.0% | |
| TCATATTCTCCATGACCGAG+AGG | - | chr7.1:2199-2218 | None:intergenic | 45.0% | |
| TGTGCCAAATTTGGAGGAAG+TGG | + | chr7.1:2813-2832 | MS.gene001375:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | chr7.1:719-738 | MS.gene001375:CDS | 45.0% | |
| ! | ATGGCCTTGATCAACAGTTC+TGG | - | chr7.1:1889-1908 | None:intergenic | 45.0% |
| ! | GGGCATTGTACTTGAAACAC+TGG | - | chr7.1:1971-1990 | None:intergenic | 45.0% |
| !! | CCTGTCACATGGATTGGAAT+TGG | - | chr7.1:1828-1847 | None:intergenic | 45.0% |
| !! | TTGTAGGTATCGATGGTGGT+AGG | - | chr7.1:2485-2504 | None:intergenic | 45.0% |
| !!! | TGATTTTAAAAAATAATTAA+TGG | + | chr7.1:2362-2381 | MS.gene001375:intron | 5.0% |
| !!! | TTAATTATTTTTTAAAATCA+AGG | - | chr7.1:2362-2381 | None:intergenic | 5.0% |
| AAGCATGTCTGACGGCTTGT+AGG | - | chr7.1:2501-2520 | None:intergenic | 50.0% | |
| AATCCATGTGACAGGAACCC+GGG | + | chr7.1:1833-1852 | MS.gene001375:intron | 50.0% | |
| ACAGCTCGCATTCCATCAAC+AGG | - | chr7.1:1034-1053 | None:intergenic | 50.0% | |
| AGAGGGTTGGAACCTTGGAT+TGG | - | chr7.1:2181-2200 | None:intergenic | 50.0% | |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | chr7.1:711-730 | None:intergenic | 50.0% | |
| AGCAACAGCACAGTAACCGA+GGG | - | chr7.1:770-789 | None:intergenic | 50.0% | |
| AGTGATGTGTAGGCTCACGA+AGG | - | chr7.1:2446-2465 | None:intergenic | 50.0% | |
| ATCCAAGGTTCCAACCCTCT+CGG | + | chr7.1:2181-2200 | MS.gene001375:intron | 50.0% | |
| ATGCCTTCTTTGGGCAGGAT+TGG | - | chr7.1:1937-1956 | None:intergenic | 50.0% | |
| CAACGATGTCACCCACCAAA+TGG | - | chr7.1:855-874 | None:intergenic | 50.0% | |
| CAATCCATGTGACAGGAACC+CGG | + | chr7.1:1832-1851 | MS.gene001375:intron | 50.0% | |
| CACCCCAATCATGAGCTACA+AGG | - | chr7.1:912-931 | None:intergenic | 50.0% | |
| GATGGAATGCGAGCTGTGTA+TGG | + | chr7.1:1037-1056 | MS.gene001375:CDS | 50.0% | |
| TGATTTCCTCGGCAGCTTCT+TGG | - | chr7.1:2869-2888 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | chr7.1:710-729 | MS.gene001375:CDS | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | + | chr7.1:923-942 | MS.gene001375:intron | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | + | chr7.1:919-938 | MS.gene001375:CDS | 50.0% |
| !! | GTTGCTCTCATCGACTCACT+TGG | + | chr7.1:871-890 | MS.gene001375:CDS | 50.0% |
| !! | TGACGGCTTGTAGGTATCGA+TGG | - | chr7.1:2492-2511 | None:intergenic | 50.0% |
| AGCCAAGAGCAGCAATCTGG+TGG | - | chr7.1:747-766 | None:intergenic | 55.0% | |
| ATTGCTGCTCTTGGCTCCCT+CGG | + | chr7.1:751-770 | MS.gene001375:CDS | 55.0% | |
| CCACCAATCCTGCCCAAAGA+AGG | + | chr7.1:1931-1950 | MS.gene001375:CDS | 55.0% | |
| CCTTCTTTGGGCAGGATTGG+TGG | - | chr7.1:1934-1953 | None:intergenic | 55.0% | |
| CGGGTTCCTGTCACATGGAT+TGG | - | chr7.1:1834-1853 | None:intergenic | 55.0% | |
| CTTCTTGCGAGAGCCAGGAA+GGG | - | chr7.1:1996-2015 | None:intergenic | 55.0% | |
| GACATCTTCTTGCGAGAGCC+AGG | - | chr7.1:2001-2020 | None:intergenic | 55.0% | |
| GAGCAACAGCACAGTAACCG+AGG | - | chr7.1:771-790 | None:intergenic | 55.0% | |
| GCTCCAGATCTCCGTGGTTA+CGG | + | chr7.1:787-806 | MS.gene001375:CDS | 55.0% | |
| GTGACAGGAACCCGGGAAAA+TGG | + | chr7.1:1840-1859 | MS.gene001375:intron | 55.0% | |
| TCACAACCAAGAAGCTGCCG+AGG | + | chr7.1:2860-2879 | MS.gene001375:CDS | 55.0% | |
| TCTTCTTGCGAGAGCCAGGA+AGG | - | chr7.1:1997-2016 | None:intergenic | 55.0% | |
| TTCTCCATGACCGAGAGGGT+TGG | - | chr7.1:2194-2213 | None:intergenic | 55.0% | |
| TTTCCCGGGTTCCTGTCACA+TGG | - | chr7.1:1839-1858 | None:intergenic | 55.0% | |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | chr7.1:724-743 | None:intergenic | 55.0% |
| !! | CGGCTTGTAGGTATCGATGG+TGG | - | chr7.1:2489-2508 | None:intergenic | 55.0% |
| ATTGGGAGCTCACGGCAGCA+TGG | + | chr7.1:2680-2699 | MS.gene001375:CDS | 60.0% | |
| CGCCACCAGATTGCTGCTCT+TGG | + | chr7.1:742-761 | MS.gene001375:CDS | 60.0% | |
| GACCGAGAGGGTTGGAACCT+TGG | - | chr7.1:2186-2205 | None:intergenic | 60.0% | |
| GCTGTTGCTCCAGATCTCCG+TGG | + | chr7.1:781-800 | MS.gene001375:CDS | 60.0% | |
| GGGAGCCAAGAGCAGCAATC+TGG | - | chr7.1:750-769 | None:intergenic | 60.0% | |
| GGTTCCAACCCTCTCGGTCA+TGG | + | chr7.1:2187-2206 | MS.gene001375:intron | 60.0% | |
| GTACAATGCCCCTCCCTTCC+TGG | + | chr7.1:1980-1999 | MS.gene001375:CDS | 60.0% | |
| TCGCCGTAACCACGGAGATC+TGG | - | chr7.1:793-812 | None:intergenic | 60.0% | |
| TTGCGAGAGCCAGGAAGGGA+GGG | - | chr7.1:1992-2011 | None:intergenic | 60.0% | |
| !! | CATCGGTGTCGCCGTAACCA+CGG | - | chr7.1:801-820 | None:intergenic | 60.0% |
| CTTGCGAGAGCCAGGAAGGG+AGG | - | chr7.1:1993-2012 | None:intergenic | 65.0% | |
| GAGCTCACGGCAGCATGGAC+CGG | + | chr7.1:2685-2704 | MS.gene001375:CDS | 65.0% | |
| TGCGAGAGCCAGGAAGGGAG+GGG | - | chr7.1:1991-2010 | None:intergenic | 65.0% | |
| ! | TTGGGCAGGATTGGTGGCCC+AGG | - | chr7.1:1928-1947 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 619 | 2957 | 619 | ID=MS.gene001375 |
| chr7.1 | mRNA | 619 | 2957 | 619 | ID=MS.gene001375.t1;Parent=MS.gene001375 |
| chr7.1 | exon | 619 | 940 | 619 | ID=MS.gene001375.t1.exon1;Parent=MS.gene001375.t1 |
| chr7.1 | CDS | 619 | 940 | 619 | ID=cds.MS.gene001375.t1;Parent=MS.gene001375.t1 |
| chr7.1 | exon | 972 | 1087 | 972 | ID=MS.gene001375.t1.exon2;Parent=MS.gene001375.t1 |
| chr7.1 | CDS | 972 | 1087 | 972 | ID=cds.MS.gene001375.t1;Parent=MS.gene001375.t1 |
| chr7.1 | exon | 1847 | 2091 | 1847 | ID=MS.gene001375.t1.exon3;Parent=MS.gene001375.t1 |
| chr7.1 | CDS | 1847 | 2091 | 1847 | ID=cds.MS.gene001375.t1;Parent=MS.gene001375.t1 |
| chr7.1 | exon | 2678 | 2957 | 2678 | ID=MS.gene001375.t1.exon4;Parent=MS.gene001375.t1 |
| chr7.1 | CDS | 2678 | 2957 | 2678 | ID=cds.MS.gene001375.t1;Parent=MS.gene001375.t1 |
| Gene Sequence |
| Protein sequence |
