Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005273.t1 | XP_003604118.1 | 97.5 | 322 | 8 | 0 | 1 | 322 | 1 | 322 | 8.50E-191 | 676 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005273.t1 | I6YGS0 | 35.6 | 329 | 189 | 7 | 1 | 319 | 1 | 316 | 1.4e-56 | 221.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005273.t1 | G7JUF4 | 97.5 | 322 | 8 | 0 | 1 | 322 | 1 | 322 | 6.1e-191 | 676.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005273 | MS.gene76453 | PPI |
| MS.gene005273 | MS.gene035373 | PPI |
| MS.gene005273 | MS.gene07001 | PPI |
| MS.gene066360 | MS.gene005273 | PPI |
| MS.gene89620 | MS.gene005273 | PPI |
| MS.gene005273 | MS.gene066361 | PPI |
| MS.gene005273 | MS.gene035371 | PPI |
| MS.gene005273 | MS.gene071502 | PPI |
| MS.gene005273 | MS.gene071504 | PPI |
| MS.gene005273 | MS.gene22955 | PPI |
| MS.gene005273 | MS.gene071500 | PPI |
| MS.gene005273 | MS.gene041604 | PPI |
| MS.gene005273 | MS.gene77823 | PPI |
| MS.gene005273 | MS.gene025707 | PPI |
| MS.gene035367 | MS.gene005273 | PPI |
| MS.gene005273 | MS.gene012063 | PPI |
| MS.gene005273 | MS.gene035369 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005273.t1 | MTR_4g005160 | 97.516 | 322 | 8 | 0 | 1 | 322 | 1 | 322 | 0.0 | 653 |
| MS.gene005273.t1 | MTR_7g113030 | 72.755 | 323 | 83 | 3 | 1 | 322 | 1 | 319 | 0.0 | 503 |
| MS.gene005273.t1 | MTR_7g113050 | 72.446 | 323 | 84 | 3 | 1 | 322 | 1 | 319 | 0.0 | 502 |
| MS.gene005273.t1 | MTR_7g113020 | 73.065 | 323 | 82 | 3 | 1 | 322 | 1 | 319 | 1.36e-180 | 501 |
| MS.gene005273.t1 | MTR_7g112615 | 72.136 | 323 | 85 | 3 | 1 | 322 | 1 | 319 | 6.65e-179 | 497 |
| MS.gene005273.t1 | MTR_7g112620 | 70.898 | 323 | 89 | 3 | 1 | 322 | 1 | 319 | 7.23e-177 | 492 |
| MS.gene005273.t1 | MTR_7g112960 | 68.111 | 323 | 98 | 3 | 1 | 322 | 1 | 319 | 2.13e-166 | 466 |
| MS.gene005273.t1 | MTR_7g112963 | 67.492 | 323 | 100 | 3 | 1 | 322 | 1 | 319 | 2.86e-163 | 457 |
| MS.gene005273.t1 | MTR_7g112970 | 68.111 | 323 | 95 | 5 | 1 | 322 | 1 | 316 | 2.59e-162 | 455 |
| MS.gene005273.t1 | MTR_7g113050 | 74.274 | 241 | 58 | 2 | 1 | 240 | 1 | 238 | 5.39e-136 | 385 |
| MS.gene005273.t1 | MTR_7g108825 | 57.143 | 322 | 133 | 3 | 1 | 322 | 1 | 317 | 1.96e-133 | 382 |
| MS.gene005273.t1 | MTR_7g112615 | 73.444 | 241 | 60 | 2 | 1 | 240 | 1 | 238 | 2.12e-133 | 379 |
| MS.gene005273.t1 | MTR_4g120240 | 57.099 | 324 | 132 | 4 | 1 | 322 | 37 | 355 | 7.47e-133 | 382 |
| MS.gene005273.t1 | MTR_7g113010 | 65.854 | 287 | 89 | 5 | 1 | 284 | 1 | 281 | 9.84e-132 | 387 |
| MS.gene005273.t1 | MTR_1g083480 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 1.26e-114 | 329 |
| MS.gene005273.t1 | MTR_7g108825 | 57.083 | 240 | 99 | 2 | 1 | 240 | 1 | 236 | 1.77e-96 | 285 |
| MS.gene005273.t1 | MTR_8g076680 | 44.410 | 322 | 172 | 5 | 1 | 322 | 3 | 317 | 9.35e-94 | 281 |
| MS.gene005273.t1 | MTR_7g112615 | 74.691 | 162 | 37 | 2 | 1 | 161 | 1 | 159 | 4.88e-86 | 256 |
| MS.gene005273.t1 | MTR_8g076680 | 46.667 | 240 | 124 | 2 | 1 | 240 | 3 | 238 | 5.41e-76 | 233 |
| MS.gene005273.t1 | MTR_7g112910 | 48.400 | 250 | 70 | 6 | 74 | 322 | 4 | 195 | 1.49e-70 | 218 |
| MS.gene005273.t1 | MTR_2g090240 | 36.923 | 325 | 186 | 8 | 1 | 321 | 1 | 310 | 1.33e-62 | 201 |
| MS.gene005273.t1 | MTR_2g090245 | 36.000 | 325 | 189 | 8 | 1 | 321 | 1 | 310 | 3.67e-61 | 197 |
| MS.gene005273.t1 | MTR_4g089040 | 35.152 | 330 | 184 | 9 | 1 | 321 | 1 | 309 | 7.43e-60 | 194 |
| MS.gene005273.t1 | MTR_4g089060 | 34.462 | 325 | 193 | 7 | 1 | 321 | 1 | 309 | 1.34e-59 | 193 |
| MS.gene005273.t1 | MTR_4g089060 | 33.721 | 344 | 197 | 9 | 1 | 321 | 1 | 336 | 1.04e-54 | 182 |
| MS.gene005273.t1 | MTR_4g089060 | 36.864 | 236 | 136 | 4 | 1 | 233 | 1 | 226 | 4.74e-50 | 166 |
| MS.gene005273.t1 | MTR_3g024250 | 67.273 | 110 | 33 | 1 | 45 | 154 | 1 | 107 | 2.85e-49 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005273.t1 | AT3G05600 | 60.061 | 328 | 121 | 6 | 1 | 322 | 1 | 324 | 1.41e-145 | 413 |
| MS.gene005273.t1 | AT4G02340 | 54.630 | 324 | 137 | 5 | 1 | 322 | 1 | 316 | 4.59e-131 | 376 |
| MS.gene005273.t1 | AT4G15960 | 52.280 | 329 | 145 | 6 | 1 | 322 | 51 | 374 | 2.41e-116 | 341 |
| MS.gene005273.t1 | AT2G26740 | 55.692 | 325 | 134 | 6 | 4 | 322 | 1 | 321 | 5.09e-116 | 338 |
| MS.gene005273.t1 | AT2G26750 | 53.704 | 324 | 141 | 6 | 4 | 322 | 1 | 320 | 3.48e-110 | 323 |
| MS.gene005273.t1 | AT3G05600 | 61.382 | 246 | 86 | 5 | 1 | 240 | 1 | 243 | 5.53e-110 | 320 |
| MS.gene005273.t1 | AT4G15955 | 49.398 | 332 | 125 | 7 | 3 | 322 | 4 | 304 | 3.22e-101 | 300 |
| MS.gene005273.t1 | AT3G51000 | 44.411 | 331 | 158 | 8 | 3 | 322 | 4 | 319 | 2.44e-92 | 278 |
| MS.gene005273.t1 | AT4G15955 | 59.777 | 179 | 58 | 4 | 3 | 170 | 4 | 179 | 2.46e-69 | 214 |
| MS.gene005273.t1 | AT4G15955 | 60.000 | 170 | 54 | 4 | 3 | 161 | 4 | 170 | 5.36e-66 | 205 |
Find 99 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCCTTGACTCTTTC+TGG | 0.151751 | 1.1:+61838313 | None:intergenic |
| TGCAGTGGCCCCTGATCTTC+GGG | 0.210716 | 1.1:-61838497 | MS.gene005273:CDS |
| TGATGTCTTGTGCTGCTTCT+TGG | 0.213872 | 1.1:+61837499 | None:intergenic |
| CTATTATGTGTGCAGATTTC+AGG | 0.219315 | 1.1:-61838203 | MS.gene005273:intron |
| CTCTTGGCGCCATCAGATTC+TGG | 0.252842 | 1.1:-61838542 | MS.gene005273:CDS |
| GCATCATAGTTGTTTACTTT+GGG | 0.258817 | 1.1:+61838250 | None:intergenic |
| GTGCAGTGGCCCCTGATCTT+CGG | 0.304764 | 1.1:-61838498 | MS.gene005273:CDS |
| GTTACTAAATTCAACAAAAC+TGG | 0.304863 | 1.1:-61837867 | MS.gene005273:CDS |
| CCAGTTCCATACCCTCCTTT+TGG | 0.320325 | 1.1:+61837954 | None:intergenic |
| CAAGAAAGATGTTCCAGGTT+TGG | 0.350912 | 1.1:-61837562 | MS.gene005273:CDS |
| GATGCATTTCATGCCAAGTA+TGG | 0.358360 | 1.1:-61838232 | MS.gene005273:CDS |
| TCACCGTAGCCCCGAAGATC+AGG | 0.368042 | 1.1:+61838487 | None:intergenic |
| CACAGAATAGTAGAAGTAAA+TGG | 0.369517 | 1.1:-61838640 | MS.gene005273:CDS |
| GTGTAGCTGGTCACTGATTC+CGG | 0.373779 | 1.1:+61838454 | None:intergenic |
| TTCAACAAAACTGGCTTCAC+TGG | 0.380968 | 1.1:-61837858 | MS.gene005273:CDS |
| TGCATCATAGTTGTTTACTT+TGG | 0.388996 | 1.1:+61838249 | None:intergenic |
| TGCAGGATATCTTACCATCT+TGG | 0.393575 | 1.1:-61837917 | MS.gene005273:CDS |
| TGGAAAAGCCGAAGCCGAAT+TGG | 0.398454 | 1.1:-61838045 | MS.gene005273:CDS |
| CCAAAAGGAGGGTATGGAAC+TGG | 0.402502 | 1.1:-61837954 | MS.gene005273:CDS |
| TCCCTGAGTTATGGTACTCT+TGG | 0.411714 | 1.1:-61838558 | MS.gene005273:CDS |
| TACTCCAGCCAATTCGGCTT+CGG | 0.419392 | 1.1:+61838037 | None:intergenic |
| ATAATAATCAAGATCTTCTT+CGG | 0.431491 | 1.1:+61837890 | None:intergenic |
| GTACCGGTAAAGTACATTAC+AGG | 0.434050 | 1.1:-61837645 | MS.gene005273:CDS |
| TGCACGGTTTCCCTGAGTTA+TGG | 0.436444 | 1.1:-61838567 | MS.gene005273:CDS |
| GCCCCTGATCTTCGGGGCTA+CGG | 0.442117 | 1.1:-61838490 | MS.gene005273:CDS |
| TGTACCTTGTCGGACATGAT+TGG | 0.443115 | 1.1:-61838372 | MS.gene005273:CDS |
| TCTCCTGTAATGTACTTTAC+CGG | 0.448119 | 1.1:+61837642 | None:intergenic |
| ATCACCAACAAGGTGAAAAC+AGG | 0.453861 | 1.1:+61838432 | None:intergenic |
| GGTAAGATATCCTGCATATC+CGG | 0.455206 | 1.1:+61837924 | None:intergenic |
| GTTCCATTCCGACCCTTCCT+TGG | 0.455873 | 1.1:-61838280 | MS.gene005273:CDS |
| TTTGGGGTTTCTTCCAAGGA+AGG | 0.460713 | 1.1:+61838267 | None:intergenic |
| CATGATTGGGGTGCGATCAT+TGG | 0.463520 | 1.1:-61838358 | MS.gene005273:CDS |
| TTACTTTGGGGTTTCTTCCA+AGG | 0.467534 | 1.1:+61838263 | None:intergenic |
| GGCCACTGCACGGTAACCCT+TGG | 0.471280 | 1.1:+61838510 | None:intergenic |
| GGTTTCAAGAAAGATGTTCC+AGG | 0.471931 | 1.1:-61837567 | MS.gene005273:CDS |
| TGGATTCAATCCGGATATGC+AGG | 0.474601 | 1.1:-61837934 | MS.gene005273:CDS |
| TGTTCCAGGTTTGGAGGAAG+TGG | 0.476149 | 1.1:-61837553 | MS.gene005273:CDS |
| AACACCTACTCCAGCCAATT+CGG | 0.482718 | 1.1:+61838031 | None:intergenic |
| GTACCTTGTCGGACATGATT+GGG | 0.482847 | 1.1:-61838371 | MS.gene005273:CDS |
| AAAATGCATGTTGCAGAGAA+AGG | 0.492527 | 1.1:-61838613 | MS.gene005273:CDS |
| AAGGTGAAAACAGGTGTAGC+TGG | 0.497712 | 1.1:+61838441 | None:intergenic |
| TTTGGAGGAAGTGGTTGTGC+AGG | 0.503362 | 1.1:-61837544 | MS.gene005273:CDS |
| CATTACAGGAGATTGTGGTT+TGG | 0.505307 | 1.1:-61837631 | MS.gene005273:CDS |
| ATAATAGTCATCTCCATACT+TGG | 0.505750 | 1.1:+61838219 | None:intergenic |
| CTACGGTGAAACTGAAGCTC+CGG | 0.515024 | 1.1:-61838473 | MS.gene005273:CDS |
| GAGGAAGTGGTTGTGCAGGA+AGG | 0.517437 | 1.1:-61837540 | MS.gene005273:CDS |
| TTGGGGTTTCTTCCAAGGAA+GGG | 0.521536 | 1.1:+61838268 | None:intergenic |
| AAAGCCGAAGCCGAATTGGC+TGG | 0.521985 | 1.1:-61838041 | MS.gene005273:CDS |
| CGCCAAGAGTACCATAACTC+AGG | 0.523914 | 1.1:+61838556 | None:intergenic |
| CATCATAGTTGTTTACTTTG+GGG | 0.527231 | 1.1:+61838251 | None:intergenic |
| AACAAAACTGGCTTCACTGG+AGG | 0.529011 | 1.1:-61837855 | MS.gene005273:CDS |
| GATTCTGGATTTGAGCTCCA+AGG | 0.531726 | 1.1:-61838527 | MS.gene005273:CDS |
| AGGAAGTGGTTGTGCAGGAA+GGG | 0.538638 | 1.1:-61837539 | MS.gene005273:CDS |
| ACAACCACTTCCTCCAAACC+TGG | 0.541024 | 1.1:+61837549 | None:intergenic |
| CACCGTAGCCCCGAAGATCA+GGG | 0.541844 | 1.1:+61838488 | None:intergenic |
| CTTCCAAGGAAGGGTCGGAA+TGG | 0.543706 | 1.1:+61838277 | None:intergenic |
| CCAGTGGTGTTGATGTTGCA+CGG | 0.546061 | 1.1:-61838583 | MS.gene005273:CDS |
| GAAAGATGTTCCAGGTTTGG+AGG | 0.547019 | 1.1:-61837559 | MS.gene005273:CDS |
| ATTCTGGATTTGAGCTCCAA+GGG | 0.550282 | 1.1:-61838526 | MS.gene005273:CDS |
| CCGTGCAACATCAACACCAC+TGG | 0.550819 | 1.1:+61838583 | None:intergenic |
| TGGAACACTAAGACAAACAT+AGG | 0.551680 | 1.1:+61838297 | None:intergenic |
| AAGTACATTACAGGAGATTG+TGG | 0.554055 | 1.1:-61837636 | MS.gene005273:CDS |
| ACATCACCATGGAGTGAAGT+AGG | 0.556604 | 1.1:-61837678 | MS.gene005273:CDS |
| GTGGACAAAGTGTACCTTGT+CGG | 0.558093 | 1.1:-61838382 | MS.gene005273:CDS |
| GGTTTCTTCCAAGGAAGGGT+CGG | 0.558393 | 1.1:+61838272 | None:intergenic |
| CTCCAAGGGTTACCGTGCAG+TGG | 0.559388 | 1.1:-61838512 | MS.gene005273:CDS |
| ATTGCACTCATTGACTCTCT+AGG | 0.560324 | 1.1:-61838406 | MS.gene005273:CDS |
| ACAAAACTGGCTTCACTGGA+GGG | 0.561868 | 1.1:-61837854 | MS.gene005273:CDS |
| TCTTCTTCGGAAAGCCAAGA+TGG | 0.563903 | 1.1:+61837903 | None:intergenic |
| TTTGGGAAAATTGGAGGACC+GGG | 0.570933 | 1.1:+61837972 | None:intergenic |
| ATGGTTACTTTCCAGGAACT+GGG | 0.571538 | 1.1:-61837706 | MS.gene005273:intron |
| AGTAGGAGTGGTAAATGTAC+CGG | 0.572295 | 1.1:-61837661 | MS.gene005273:CDS |
| GTATGGAACTGGATTCAATC+CGG | 0.573575 | 1.1:-61837943 | MS.gene005273:CDS |
| TGATAACATTGATAGGAACC+TGG | 0.573596 | 1.1:-61838065 | MS.gene005273:intron |
| ACCACTCCTACTTCACTCCA+TGG | 0.577429 | 1.1:+61837672 | None:intergenic |
| ATGATGACAACGAGGAAACC+CGG | 0.579962 | 1.1:-61837990 | MS.gene005273:CDS |
| GAAGATCAGGGGCCACTGCA+CGG | 0.580274 | 1.1:+61838500 | None:intergenic |
| ATACACTACGCCGAGTATGA+AGG | 0.580910 | 1.1:-61837607 | MS.gene005273:CDS |
| ATTGGGGTGCGATCATTGGT+TGG | 0.598471 | 1.1:-61838354 | MS.gene005273:CDS |
| AGCTCAAATCCAGAATCTGA+TGG | 0.613338 | 1.1:+61838533 | None:intergenic |
| GCCAAGAGTACCATAACTCA+GGG | 0.614710 | 1.1:+61838557 | None:intergenic |
| AGGCCTTGACTCTTTCTGGT+CGG | 0.616032 | 1.1:+61838317 | None:intergenic |
| CATGTTGCAGAGAAAGGAGA+AGG | 0.616899 | 1.1:-61838607 | MS.gene005273:CDS |
| ACCGTAGCCCCGAAGATCAG+GGG | 0.621226 | 1.1:+61838489 | None:intergenic |
| GCAGTGGCCCCTGATCTTCG+GGG | 0.625803 | 1.1:-61838496 | MS.gene005273:CDS |
| ATGAAGGAATATATCCTCGA+TGG | 0.629060 | 1.1:-61837591 | MS.gene005273:CDS |
| CACCCCAATCATGTCCGACA+AGG | 0.629611 | 1.1:+61838368 | None:intergenic |
| AGGATATATTCCTTCATACT+CGG | 0.633804 | 1.1:+61837597 | None:intergenic |
| ACCATGGAGTGAAGTAGGAG+TGG | 0.635510 | 1.1:-61837673 | MS.gene005273:CDS |
| TACCTTGTCGGACATGATTG+GGG | 0.642774 | 1.1:-61838370 | MS.gene005273:CDS |
| AAGGAATATATCCTCGATGG+TGG | 0.654767 | 1.1:-61837588 | MS.gene005273:CDS |
| AGAGAAAGGAGAAGGTCCAG+TGG | 0.656472 | 1.1:-61838599 | MS.gene005273:CDS |
| GTTCCGACCAGAAAGAGTCA+AGG | 0.675560 | 1.1:-61838320 | MS.gene005273:CDS |
| GAAGCCGAATTGGCTGGAGT+AGG | 0.676454 | 1.1:-61838035 | MS.gene005273:CDS |
| ACTCATTGACTCTCTAGGTG+TGG | 0.677971 | 1.1:-61838401 | MS.gene005273:CDS |
| GTGCAATGATATCACCAACA+AGG | 0.702915 | 1.1:+61838422 | None:intergenic |
| CTTTCTTGAAACCACCATCG+AGG | 0.706418 | 1.1:+61837577 | None:intergenic |
| ACTGGGAGCTAACATCACCA+TGG | 0.711994 | 1.1:-61837689 | MS.gene005273:CDS |
| TGCGTAACATGATGACAACG+AGG | 0.737897 | 1.1:-61837998 | MS.gene005273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAAATACAACAAAATTT+AGG | - | chr1.1:61838010-61838029 | MS.gene005273:CDS | 15.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | + | chr1.1:61838232-61838251 | None:intergenic | 20.0% |
| !! | CTTTAGTATATATAAAGACA+TGG | - | chr1.1:61837965-61837984 | MS.gene005273:CDS | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | - | chr1.1:61838047-61838066 | MS.gene005273:CDS | 20.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | - | chr1.1:61838252-61838271 | MS.gene005273:CDS | 25.0% |
| AGGATATATTCCTTCATACT+CGG | + | chr1.1:61838525-61838544 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | + | chr1.1:61837903-61837922 | None:intergenic | 30.0% | |
| CACAGAATAGTAGAAGTAAA+TGG | - | chr1.1:61837479-61837498 | MS.gene005273:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | + | chr1.1:61837871-61837890 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | + | chr1.1:61838115-61838134 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | + | chr1.1:61837872-61837891 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | + | chr1.1:61837873-61837892 | None:intergenic | 30.0% | |
| AAAATGCATGTTGCAGAGAA+AGG | - | chr1.1:61837506-61837525 | MS.gene005273:CDS | 35.0% | |
| AAGTACATTACAGGAGATTG+TGG | - | chr1.1:61838483-61838502 | MS.gene005273:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | - | chr1.1:61838528-61838547 | MS.gene005273:CDS | 35.0% | |
| CATTATCAGCTAGTGAAAAG+AGG | + | chr1.1:61838396-61838415 | None:intergenic | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | - | chr1.1:61837916-61837935 | MS.gene005273:CDS | 35.0% | |
| TCTCCTGTAATGTACTTTAC+CGG | + | chr1.1:61838480-61838499 | None:intergenic | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | - | chr1.1:61838054-61838073 | MS.gene005273:intron | 35.0% | |
| TGGAACACTAAGACAAACAT+AGG | + | chr1.1:61837825-61837844 | None:intergenic | 35.0% | |
| ! | CTCTTTTCACTAGCTGATAA+TGG | - | chr1.1:61838394-61838413 | MS.gene005273:CDS | 35.0% |
| AAGGAATATATCCTCGATGG+TGG | - | chr1.1:61838531-61838550 | MS.gene005273:CDS | 40.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | + | chr1.1:61837589-61837608 | None:intergenic | 40.0% | |
| AGTAGGAGTGGTAAATGTAC+CGG | - | chr1.1:61838458-61838477 | MS.gene005273:CDS | 40.0% | |
| ATCACCAACAAGGTGAAAAC+AGG | + | chr1.1:61837690-61837709 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | - | chr1.1:61837593-61837612 | MS.gene005273:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | - | chr1.1:61838557-61838576 | MS.gene005273:CDS | 40.0% | |
| CATTACAGGAGATTGTGGTT+TGG | - | chr1.1:61838488-61838507 | MS.gene005273:CDS | 40.0% | |
| GATGCATTTCATGCCAAGTA+TGG | - | chr1.1:61837887-61837906 | MS.gene005273:CDS | 40.0% | |
| GGTAAGATATCCTGCATATC+CGG | + | chr1.1:61838198-61838217 | None:intergenic | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | - | chr1.1:61838552-61838571 | MS.gene005273:CDS | 40.0% | |
| GTATGGAACTGGATTCAATC+CGG | - | chr1.1:61838176-61838195 | MS.gene005273:intron | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | + | chr1.1:61837700-61837719 | None:intergenic | 40.0% | |
| TGCAGGATATCTTACCATCT+TGG | - | chr1.1:61838202-61838221 | MS.gene005273:intron | 40.0% | |
| ! | AATGGTTACTTTCCAGGAAC+TGG | - | chr1.1:61838412-61838431 | MS.gene005273:CDS | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | - | chr1.1:61838413-61838432 | MS.gene005273:CDS | 40.0% |
| ! | ATTTTCCCAAAAGGAGGGTA+TGG | - | chr1.1:61838159-61838178 | MS.gene005273:intron | 40.0% |
| ! | CTCCAATTTTCCCAAAAGGA+GGG | - | chr1.1:61838154-61838173 | MS.gene005273:intron | 40.0% |
| ! | GTACCGGTAAAGTACATTAC+AGG | - | chr1.1:61838474-61838493 | MS.gene005273:CDS | 40.0% |
| ! | TACACCTGTTTTCACCTTGT+TGG | - | chr1.1:61837683-61837702 | MS.gene005273:CDS | 40.0% |
| ! | TTCAACAAAACTGGCTTCAC+TGG | - | chr1.1:61838261-61838280 | MS.gene005273:CDS | 40.0% |
| !! | ATTGCACTCATTGACTCTCT+AGG | - | chr1.1:61837713-61837732 | MS.gene005273:intron | 40.0% |
| !! | GCTGATAATGGTTACTTTCC+AGG | - | chr1.1:61838406-61838425 | MS.gene005273:CDS | 40.0% |
| !! | TACCCTCCTTTTGGGAAAAT+TGG | + | chr1.1:61838159-61838178 | None:intergenic | 40.0% |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | + | chr1.1:61837859-61837878 | None:intergenic | 40.0% |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | + | chr1.1:61838151-61838170 | None:intergenic | 40.0% |
| AACACCTACTCCAGCCAATT+CGG | + | chr1.1:61838091-61838110 | None:intergenic | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | + | chr1.1:61837681-61837700 | None:intergenic | 45.0% | |
| ACATAGGCCTTGACTCTTTC+TGG | + | chr1.1:61837809-61837828 | None:intergenic | 45.0% | |
| ACATCACCATGGAGTGAAGT+AGG | - | chr1.1:61838441-61838460 | MS.gene005273:CDS | 45.0% | |
| ATACACTACGCCGAGTATGA+AGG | - | chr1.1:61838512-61838531 | MS.gene005273:CDS | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | - | chr1.1:61838129-61838148 | MS.gene005273:intron | 45.0% | |
| CATGTTGCAGAGAAAGGAGA+AGG | - | chr1.1:61837512-61837531 | MS.gene005273:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | + | chr1.1:61838545-61838564 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | - | chr1.1:61838560-61838579 | MS.gene005273:CDS | 45.0% | |
| GATTCTGGATTTGAGCTCCA+AGG | - | chr1.1:61837592-61837611 | MS.gene005273:CDS | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | - | chr1.1:61837748-61837767 | MS.gene005273:intron | 45.0% | |
| GTGGACAAAGTGTACCTTGT+CGG | - | chr1.1:61837737-61837756 | MS.gene005273:intron | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | - | chr1.1:61837749-61837768 | MS.gene005273:intron | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | - | chr1.1:61837561-61837580 | MS.gene005273:CDS | 45.0% | |
| TCTTCTTCGGAAAGCCAAGA+TGG | + | chr1.1:61838219-61838238 | None:intergenic | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | - | chr1.1:61838121-61838140 | MS.gene005273:intron | 45.0% | |
| TGGATTCAATCCGGATATGC+AGG | - | chr1.1:61838185-61838204 | MS.gene005273:intron | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | - | chr1.1:61837747-61837766 | MS.gene005273:intron | 45.0% | |
| TTGGGGTTTCTTCCAAGGAA+GGG | + | chr1.1:61837854-61837873 | None:intergenic | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | + | chr1.1:61838150-61838169 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | - | chr1.1:61838264-61838283 | MS.gene005273:CDS | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | - | chr1.1:61838265-61838284 | MS.gene005273:CDS | 45.0% |
| ! | CAGTTCCATACCCTCCTTTT+GGG | + | chr1.1:61838167-61838186 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | - | chr1.1:61838153-61838172 | MS.gene005273:intron | 45.0% |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | - | chr1.1:61838150-61838169 | MS.gene005273:intron | 45.0% |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | + | chr1.1:61837855-61837874 | None:intergenic | 45.0% |
| !! | ACTCATTGACTCTCTAGGTG+TGG | - | chr1.1:61837718-61837737 | MS.gene005273:intron | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | + | chr1.1:61838156-61838175 | None:intergenic | 45.0% |
| !! | GCCAAGAGTACCATAACTCA+GGG | + | chr1.1:61837565-61837584 | None:intergenic | 45.0% |
| !! | TGATGTCTTGTGCTGCTTCT+TGG | + | chr1.1:61838623-61838642 | None:intergenic | 45.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | - | chr1.1:61838348-61838367 | MS.gene005273:CDS | 5.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | + | chr1.1:61838350-61838369 | None:intergenic | 5.0% |
| ACAACCACTTCCTCCAAACC+TGG | + | chr1.1:61838573-61838592 | None:intergenic | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | + | chr1.1:61838450-61838469 | None:intergenic | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | - | chr1.1:61838446-61838465 | MS.gene005273:CDS | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | - | chr1.1:61838430-61838449 | MS.gene005273:CDS | 50.0% | |
| AGAGAAAGGAGAAGGTCCAG+TGG | - | chr1.1:61837520-61837539 | MS.gene005273:CDS | 50.0% | |
| AGGAAGTGGTTGTGCAGGAA+GGG | - | chr1.1:61838580-61838599 | MS.gene005273:CDS | 50.0% | |
| ATTGGGGTGCGATCATTGGT+TGG | - | chr1.1:61837765-61837784 | MS.gene005273:intron | 50.0% | |
| CATGATTGGGGTGCGATCAT+TGG | - | chr1.1:61837761-61837780 | MS.gene005273:intron | 50.0% | |
| CTACGGTGAAACTGAAGCTC+CGG | - | chr1.1:61837646-61837665 | MS.gene005273:CDS | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | + | chr1.1:61837850-61837869 | None:intergenic | 50.0% | |
| GTTCCGACCAGAAAGAGTCA+AGG | - | chr1.1:61837799-61837818 | MS.gene005273:intron | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | + | chr1.1:61838085-61838104 | None:intergenic | 50.0% | |
| TGATGTTAGCTCCCAGTTCC+TGG | + | chr1.1:61838427-61838446 | None:intergenic | 50.0% | |
| TGCACGGTTTCCCTGAGTTA+TGG | - | chr1.1:61837552-61837571 | MS.gene005273:CDS | 50.0% | |
| TGGAAAAGCCGAAGCCGAAT+TGG | - | chr1.1:61838074-61838093 | MS.gene005273:intron | 50.0% | |
| TGTTCCAGGTTTGGAGGAAG+TGG | - | chr1.1:61838566-61838585 | MS.gene005273:CDS | 50.0% | |
| TTTGGAGGAAGTGGTTGTGC+AGG | - | chr1.1:61838575-61838594 | MS.gene005273:CDS | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | + | chr1.1:61838075-61838094 | None:intergenic | 50.0% |
| ! | AGGCCTTGACTCTTTCTGGT+CGG | + | chr1.1:61837805-61837824 | None:intergenic | 50.0% |
| ! | CCAAAAGGAGGGTATGGAAC+TGG | - | chr1.1:61838165-61838184 | MS.gene005273:intron | 50.0% |
| ! | CCAGTTCCATACCCTCCTTT+TGG | + | chr1.1:61838168-61838187 | None:intergenic | 50.0% |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | - | chr1.1:61837536-61837555 | MS.gene005273:CDS | 50.0% |
| !! | CGCCAAGAGTACCATAACTC+AGG | + | chr1.1:61837566-61837585 | None:intergenic | 50.0% |
| !! | GTGTAGCTGGTCACTGATTC+CGG | + | chr1.1:61837668-61837687 | None:intergenic | 50.0% |
| AAAGCCGAAGCCGAATTGGC+TGG | - | chr1.1:61838078-61838097 | MS.gene005273:intron | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | + | chr1.1:61837754-61837773 | None:intergenic | 55.0% | |
| CCGTGCAACATCAACACCAC+TGG | + | chr1.1:61837539-61837558 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | - | chr1.1:61837577-61837596 | MS.gene005273:CDS | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | + | chr1.1:61837845-61837864 | None:intergenic | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | - | chr1.1:61838084-61838103 | MS.gene005273:intron | 55.0% | |
| GAGGAAGTGGTTGTGCAGGA+AGG | - | chr1.1:61838579-61838598 | MS.gene005273:CDS | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | - | chr1.1:61837839-61837858 | MS.gene005273:CDS | 55.0% | |
| ACCGTAGCCCCGAAGATCAG+GGG | + | chr1.1:61837633-61837652 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | + | chr1.1:61837634-61837653 | None:intergenic | 60.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | - | chr1.1:61837607-61837626 | MS.gene005273:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | + | chr1.1:61837622-61837641 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | - | chr1.1:61837621-61837640 | MS.gene005273:CDS | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | + | chr1.1:61837635-61837654 | None:intergenic | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | - | chr1.1:61837622-61837641 | MS.gene005273:CDS | 60.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | - | chr1.1:61837623-61837642 | MS.gene005273:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | - | chr1.1:61837629-61837648 | MS.gene005273:CDS | 65.0% | |
| GGCCACTGCACGGTAACCCT+TGG | + | chr1.1:61837612-61837631 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 61837464 | 61838677 | 61837464 | ID=MS.gene005273 |
| chr1.1 | mRNA | 61837464 | 61838677 | 61837464 | ID=MS.gene005273.t1;Parent=MS.gene005273 |
| chr1.1 | exon | 61838204 | 61838677 | 61838204 | ID=MS.gene005273.t1.exon1;Parent=MS.gene005273.t1 |
| chr1.1 | CDS | 61838204 | 61838677 | 61838204 | ID=cds.MS.gene005273.t1;Parent=MS.gene005273.t1 |
| chr1.1 | exon | 61837828 | 61838072 | 61837828 | ID=MS.gene005273.t1.exon2;Parent=MS.gene005273.t1 |
| chr1.1 | CDS | 61837828 | 61838072 | 61837828 | ID=cds.MS.gene005273.t1;Parent=MS.gene005273.t1 |
| chr1.1 | exon | 61837464 | 61837713 | 61837464 | ID=MS.gene005273.t1.exon3;Parent=MS.gene005273.t1 |
| chr1.1 | CDS | 61837464 | 61837713 | 61837464 | ID=cds.MS.gene005273.t1;Parent=MS.gene005273.t1 |
| Gene Sequence |
| Protein sequence |
