Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006013.t1 | XP_003591980.1 | 93.9 | 180 | 10 | 1 | 4 | 182 | 7 | 186 | 5.10E-92 | 347.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006013.t1 | G7I9N4 | 93.9 | 180 | 10 | 1 | 4 | 182 | 7 | 186 | 3.7e-92 | 347.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33997 | MS.gene006013 | PPI |
MS.gene006014 | MS.gene006013 | PPI |
MS.gene33993 | MS.gene006013 | PPI |
MS.gene33994 | MS.gene006013 | PPI |
MS.gene038651 | MS.gene006013 | PPI |
MS.gene041739 | MS.gene006013 | PPI |
MS.gene54750 | MS.gene006013 | PPI |
MS.gene043625 | MS.gene006013 | PPI |
MS.gene041740 | MS.gene006013 | PPI |
MS.gene006013 | MS.gene041739 | PPI |
MS.gene059328 | MS.gene006013 | PPI |
MS.gene059329 | MS.gene006013 | PPI |
MS.gene33992 | MS.gene006013 | PPI |
MS.gene006015 | MS.gene006013 | PPI |
MS.gene041741 | MS.gene006013 | PPI |
MS.gene006013 | MS.gene006015 | PPI |
MS.gene006013 | MS.gene33994 | PPI |
MS.gene006013 | MS.gene043625 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006013.t1 | MTR_1g095890 | 92.473 | 186 | 10 | 2 | 1 | 182 | 1 | 186 | 2.61e-124 | 348 |
MS.gene006013.t1 | MTR_1g095900 | 78.378 | 185 | 37 | 1 | 1 | 182 | 1 | 185 | 1.78e-104 | 298 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006013.t1 | AT2G35810 | 66.292 | 178 | 53 | 3 | 4 | 178 | 22 | 195 | 8.11e-85 | 248 |
MS.gene006013.t1 | AT2G35810 | 66.292 | 178 | 53 | 3 | 4 | 178 | 22 | 195 | 8.11e-85 | 248 |
MS.gene006013.t1 | AT2G35820 | 64.246 | 179 | 58 | 2 | 4 | 180 | 8 | 182 | 1.64e-83 | 245 |
MS.gene006013.t1 | AT2G35820 | 64.246 | 179 | 58 | 2 | 4 | 180 | 98 | 272 | 5.92e-82 | 244 |
MS.gene006013.t1 | AT2G35830 | 65.909 | 176 | 58 | 2 | 4 | 178 | 8 | 182 | 7.63e-82 | 241 |
MS.gene006013.t1 | AT2G35830 | 65.730 | 178 | 50 | 4 | 4 | 178 | 8 | 177 | 4.32e-77 | 228 |
Find 49 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACGGTTAAGCTTGAGAAATT+TGG | 0.260726 | 1.3:-66699750 | None:intergenic |
GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1.3:+66699593 | MS.gene006013:CDS |
AATGAAATCAAAGATGATTC+AGG | 0.369755 | 1.3:+66699644 | MS.gene006013:CDS |
TCATCGGACGGTGAGGAGTT+TGG | 0.393253 | 1.3:+66698451 | MS.gene006013:CDS |
AACCTGAAACCTTGAAAACT+TGG | 0.407022 | 1.3:-66699727 | None:intergenic |
GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 1.3:+66699585 | MS.gene006013:CDS |
GACCTGACCGTACTCTTTGA+AGG | 0.444255 | 1.3:-66698419 | None:intergenic |
ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 1.3:+66699572 | MS.gene006013:CDS |
AGGTCAAGCTGAGCATCGTT+TGG | 0.468746 | 1.3:-66698475 | None:intergenic |
CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 1.3:+66699575 | MS.gene006013:CDS |
CAAGTGTGACTCAGTGCCTT+GGG | 0.479051 | 1.3:+66699564 | MS.gene006013:CDS |
GCAAGTGTGACTCAGTGCCT+TGG | 0.493326 | 1.3:+66699563 | MS.gene006013:CDS |
TCATTTGAATCAACAATGGA+TGG | 0.494781 | 1.3:-66699626 | None:intergenic |
TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 1.3:+66699793 | MS.gene006013:CDS |
ACCTTAGCCAAGGAATTCCC+AGG | 0.496730 | 1.3:+66698494 | MS.gene006013:CDS |
ACCTGGGAATTCCTTGGCTA+AGG | 0.513339 | 1.3:-66698495 | None:intergenic |
AATGGAGAGTGTGAAGGTGA+AGG | 0.517827 | 1.3:+66698375 | None:intergenic |
ATGAAAACCTGGGAATTCCT+TGG | 0.524061 | 1.3:-66698501 | None:intergenic |
TTATCTACCTCCTACCATTG+AGG | 0.529148 | 1.3:+66699700 | MS.gene006013:CDS |
GTCATTGAGGCTTCATCGGA+CGG | 0.541534 | 1.3:+66698439 | MS.gene006013:CDS |
AACCGTGGGACATGGCATGC+TGG | 0.544561 | 1.3:+66699767 | MS.gene006013:CDS |
ATACCAAACATTACCACCAA+TGG | 0.547916 | 1.3:-66699588 | None:intergenic |
GAAAACTTGGACATCCTCAA+TGG | 0.552522 | 1.3:-66699714 | None:intergenic |
TCAGGTCATTGAGGCTTCAT+CGG | 0.558495 | 1.3:+66698435 | MS.gene006013:CDS |
TCAAGCTTAACCGTGGGACA+TGG | 0.558912 | 1.3:+66699759 | MS.gene006013:CDS |
GATTTCATTTGAATCAACAA+TGG | 0.567401 | 1.3:-66699630 | None:intergenic |
GACCTTCAAAGAGTACGGTC+AGG | 0.570961 | 1.3:+66698417 | MS.gene006013:CDS |
GTCCTTCTTAAAGTTGTGTG+TGG | 0.574527 | 1.3:-66700027 | None:intergenic |
TACCACACACAACTTTAAGA+AGG | 0.575142 | 1.3:+66700025 | MS.gene006013:CDS |
CCGTACTCTTTGAAGGTCGC+CGG | 0.579027 | 1.3:-66698412 | None:intergenic |
CACAACTTTAAGAAGGACAA+TGG | 0.594981 | 1.3:+66700032 | MS.gene006013:CDS |
GAAGGGAATGGAGAGTGTGA+AGG | 0.597978 | 1.3:+66698369 | None:intergenic |
CAAAGATGATTCAGGCAAGA+CGG | 0.600075 | 1.3:+66699652 | MS.gene006013:CDS |
TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1.3:+66699598 | MS.gene006013:CDS |
GACCAGCATGCCATGTCCCA+CGG | 0.605299 | 1.3:-66699769 | None:intergenic |
CCGGCGACCTTCAAAGAGTA+CGG | 0.605471 | 1.3:+66698412 | MS.gene006013:CDS |
GTGATATTAGAAAACTCAAG+TGG | 0.611037 | 1.3:-66699533 | None:intergenic |
CTTTAAGAAGGACAATGGAG+TGG | 0.614786 | 1.3:+66700037 | MS.gene006013:CDS |
GAAGGCAATAGAAGCAACTC+CGG | 0.616815 | 1.3:+66698393 | MS.gene006013:CDS |
AAATTTCTCAAGCTTAACCG+TGG | 0.618191 | 1.3:+66699752 | MS.gene006013:CDS |
ACTTGGACATCCTCAATGGT+AGG | 0.620998 | 1.3:-66699710 | None:intergenic |
CATTACCACCAATGGACCCA+AGG | 0.621913 | 1.3:-66699580 | None:intergenic |
ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 1.3:-66699791 | None:intergenic |
GCTCAGCTTGACCTTAGCCA+AGG | 0.638940 | 1.3:+66698484 | MS.gene006013:CDS |
AATTTCTCAAGCTTAACCGT+GGG | 0.640376 | 1.3:+66699753 | MS.gene006013:CDS |
TGAGGCTTCATCGGACGGTG+AGG | 0.641464 | 1.3:+66698444 | MS.gene006013:CDS |
TGGACATCCTCAATGGTAGG+AGG | 0.650915 | 1.3:-66699707 | None:intergenic |
AGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 1.3:+66698426 | MS.gene006013:CDS |
ACGGTCGTGAAGTCGCACAG+CGG | 0.779451 | 1.3:+66699671 | MS.gene006013:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAATTAAATTCAAAATGAA+TGG | - | chr1.3:66698591-66698610 | None:intergenic | 10.0% |
!!! | AAAGTTATTTTGATTAAAAA+AGG | - | chr1.3:66698726-66698745 | None:intergenic | 10.0% |
!!! | AAGTTATTTTGATTAAAAAA+GGG | - | chr1.3:66698725-66698744 | None:intergenic | 10.0% |
!! | AAATTAATTCCAATAAGTTA+GGG | - | chr1.3:66699474-66699493 | None:intergenic | 15.0% |
!! | TAACTTAAGATATTTCATAA+AGG | + | chr1.3:66699044-66699063 | MS.gene006013:intron | 15.0% |
!!! | TATTTGAAAAGAAATTTTGT+TGG | - | chr1.3:66698616-66698635 | None:intergenic | 15.0% |
!!! | TATTTTTTTGGTCTTTTTTA+GGG | + | chr1.3:66699943-66699962 | MS.gene006013:intron | 15.0% |
!!! | TTATTTTTTTGGTCTTTTTT+AGG | + | chr1.3:66699942-66699961 | MS.gene006013:intron | 15.0% |
!! | CAAATTAATTCCAATAAGTT+AGG | - | chr1.3:66699475-66699494 | None:intergenic | 20.0% |
!! | TAAATTAAATGACAGCTTTA+TGG | - | chr1.3:66698660-66698679 | None:intergenic | 20.0% |
!! | TGAAATATCTTAAGTTATGT+TGG | - | chr1.3:66699041-66699060 | None:intergenic | 20.0% |
!!! | CAAAATTTTCATTTGAATTG+AGG | - | chr1.3:66698546-66698565 | None:intergenic | 20.0% |
!!! | CTCAATTCAAATGAAAATTT+TGG | + | chr1.3:66698544-66698563 | MS.gene006013:intron | 20.0% |
!!! | GGAATTAATTTGTGTTTATT+AGG | + | chr1.3:66699483-66699502 | MS.gene006013:intron | 20.0% |
!!! | TTGTGCTTATCTTATTTTTT+TGG | + | chr1.3:66699931-66699950 | MS.gene006013:intron | 20.0% |
!!! | TTTATTGTTTTATCTGATCT+TGG | + | chr1.3:66699277-66699296 | MS.gene006013:intron | 20.0% |
! | AATGAAATCAAAGATGATTC+AGG | + | chr1.3:66699644-66699663 | MS.gene006013:CDS | 25.0% |
! | ATAGTAATTGCAATCAACTT+TGG | + | chr1.3:66699231-66699250 | MS.gene006013:intron | 25.0% |
! | ATGCTCTTTACAATAATACA+TGG | + | chr1.3:66699905-66699924 | MS.gene006013:intron | 25.0% |
! | ATGTTGTTGTGATTTATGTA+TGG | + | chr1.3:66699974-66699993 | MS.gene006013:intron | 25.0% |
! | ATTACATTAAACACTGTCAT+TGG | - | chr1.3:66699015-66699034 | None:intergenic | 25.0% |
! | ATTGCAATTACTATTGATAG+TGG | - | chr1.3:66699225-66699244 | None:intergenic | 25.0% |
! | ATTGTATCAGACTTAAATAG+AGG | - | chr1.3:66699794-66699813 | None:intergenic | 25.0% |
! | ATTTAAGTGATTCTTTGTCA+AGG | + | chr1.3:66698675-66698694 | MS.gene006013:intron | 25.0% |
! | CATAATGTCAATCTAAATTG+AGG | - | chr1.3:66699423-66699442 | None:intergenic | 25.0% |
! | GATTTCATTTGAATCAACAA+TGG | - | chr1.3:66699633-66699652 | None:intergenic | 25.0% |
! | TCTATTTAAGTCTGATACAA+TGG | + | chr1.3:66699793-66699812 | MS.gene006013:CDS | 25.0% |
! | TGCTCTTTACAATAATACAT+GGG | + | chr1.3:66699906-66699925 | MS.gene006013:intron | 25.0% |
!! | ATGATTTTGTATTATGCCTT+TGG | - | chr1.3:66699151-66699170 | None:intergenic | 25.0% |
!!! | TATGGTTTTTTATTGTGTTC+AGG | + | chr1.3:66699992-66700011 | MS.gene006013:intron | 25.0% |
ATTCCAATAAGTTAGGGTAT+AGG | - | chr1.3:66699468-66699487 | None:intergenic | 30.0% | |
CATGTAACACTTTAGTGAAA+GGG | - | chr1.3:66699867-66699886 | None:intergenic | 30.0% | |
GATGCAAAATATTGATCCAA+AGG | + | chr1.3:66699132-66699151 | MS.gene006013:intron | 30.0% | |
GTGATATTAGAAAACTCAAG+TGG | - | chr1.3:66699536-66699555 | None:intergenic | 30.0% | |
GTTGTTTAAATTCACAGAGA+TGG | + | chr1.3:66699253-66699272 | MS.gene006013:intron | 30.0% | |
TACATCAGCTTAATTTAGCT+GGG | + | chr1.3:66699383-66699402 | MS.gene006013:intron | 30.0% | |
TCATTTGAATCAACAATGGA+TGG | - | chr1.3:66699629-66699648 | None:intergenic | 30.0% | |
TTACATCAGCTTAATTTAGC+TGG | + | chr1.3:66699382-66699401 | MS.gene006013:intron | 30.0% | |
AAATTTCTCAAGCTTAACCG+TGG | + | chr1.3:66699752-66699771 | MS.gene006013:CDS | 35.0% | |
AACCTGAAACCTTGAAAACT+TGG | - | chr1.3:66699730-66699749 | None:intergenic | 35.0% | |
AAGTGTAAAGCTTGAATCTG+TGG | + | chr1.3:66699185-66699204 | MS.gene006013:intron | 35.0% | |
AATTTCTCAAGCTTAACCGT+GGG | + | chr1.3:66699753-66699772 | MS.gene006013:CDS | 35.0% | |
ACGGTTAAGCTTGAGAAATT+TGG | - | chr1.3:66699753-66699772 | None:intergenic | 35.0% | |
AGAAGTGAAGAATGAAAACC+TGG | - | chr1.3:66698515-66698534 | None:intergenic | 35.0% | |
ATACCAAACATTACCACCAA+TGG | - | chr1.3:66699591-66699610 | None:intergenic | 35.0% | |
CAACCTATACCCTAACTTAT+TGG | + | chr1.3:66699462-66699481 | MS.gene006013:intron | 35.0% | |
CAATAAGTTAGGGTATAGGT+TGG | - | chr1.3:66699464-66699483 | None:intergenic | 35.0% | |
GAAGTGAAGAATGAAAACCT+GGG | - | chr1.3:66698514-66698533 | None:intergenic | 35.0% | |
GCATGTAACACTTTAGTGAA+AGG | - | chr1.3:66699868-66699887 | None:intergenic | 35.0% | |
TAACACTTTAGTGAAAGGGA+GGG | - | chr1.3:66699863-66699882 | None:intergenic | 35.0% | |
TAATGTTTGGTATCTTGGAG+TGG | + | chr1.3:66699598-66699617 | MS.gene006013:CDS | 35.0% | |
! | CACAACTTTAAGAAGGACAA+TGG | + | chr1.3:66700032-66700051 | MS.gene006013:CDS | 35.0% |
! | GCATGTTCTTGTTATGCATA+TGG | - | chr1.3:66698762-66698781 | None:intergenic | 35.0% |
! | GGATTAATCGATTCTTGGAT+TGG | + | chr1.3:66698961-66698980 | MS.gene006013:intron | 35.0% |
! | TACCACACACAACTTTAAGA+AGG | + | chr1.3:66700025-66700044 | MS.gene006013:CDS | 35.0% |
! | TCTTGTTATGCATATGGCAT+TGG | - | chr1.3:66698756-66698775 | None:intergenic | 35.0% |
! | TTTTTATTGTGTTCAGGTGG+TGG | + | chr1.3:66699998-66700017 | MS.gene006013:intron | 35.0% |
!!! | GGTTTTTTATTGTGTTCAGG+TGG | + | chr1.3:66699995-66700014 | MS.gene006013:intron | 35.0% |
ATGAAAACCTGGGAATTCCT+TGG | - | chr1.3:66698504-66698523 | None:intergenic | 40.0% | |
CAAAGATGATTCAGGCAAGA+CGG | + | chr1.3:66699652-66699671 | MS.gene006013:CDS | 40.0% | |
CCAAGAATCGATTAATCCGA+GGG | - | chr1.3:66698959-66698978 | None:intergenic | 40.0% | |
GAAAACTTGGACATCCTCAA+TGG | - | chr1.3:66699717-66699736 | None:intergenic | 40.0% | |
GTAACACTTTAGTGAAAGGG+AGG | - | chr1.3:66699864-66699883 | None:intergenic | 40.0% | |
GTCCTTCTTAAAGTTGTGTG+TGG | - | chr1.3:66700030-66700049 | None:intergenic | 40.0% | |
GTCGTAATTTCTCGCTGTTT+CGG | + | chr1.3:66699302-66699321 | MS.gene006013:intron | 40.0% | |
TCCAAGAATCGATTAATCCG+AGG | - | chr1.3:66698960-66698979 | None:intergenic | 40.0% | |
TGGAGATCAGTGAGACTATT+TGG | - | chr1.3:66698571-66698590 | None:intergenic | 40.0% | |
TTATCTACCTCCTACCATTG+AGG | + | chr1.3:66699700-66699719 | MS.gene006013:CDS | 40.0% | |
TTCTTTGACCAAACCCATCT+CGG | + | chr1.3:66698803-66698822 | MS.gene006013:intron | 40.0% | |
! | AATGACAGCTTTATGGCGAT+AGG | - | chr1.3:66698653-66698672 | None:intergenic | 40.0% |
! | ACTAAAGTGTTACATGCACC+TGG | + | chr1.3:66699871-66699890 | MS.gene006013:intron | 40.0% |
! | ATGACAGCTTTATGGCGATA+GGG | - | chr1.3:66698652-66698671 | None:intergenic | 40.0% |
! | CTTTAAGAAGGACAATGGAG+TGG | + | chr1.3:66700037-66700056 | MS.gene006013:CDS | 40.0% |
! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1.3:66699593-66699612 | MS.gene006013:CDS | 40.0% |
! | TGAGGATGTCCAAGTTTTCA+AGG | + | chr1.3:66699718-66699737 | MS.gene006013:CDS | 40.0% |
!! | AGAGCATTGCAAATGAATCC+AGG | - | chr1.3:66699892-66699911 | None:intergenic | 40.0% |
!! | GTCCAAGTTTTCAAGGTTTC+AGG | + | chr1.3:66699725-66699744 | MS.gene006013:CDS | 40.0% |
ACTTGGACATCCTCAATGGT+AGG | - | chr1.3:66699713-66699732 | None:intergenic | 45.0% | |
ATCGAACCTGAGACATTGAG+AGG | - | chr1.3:66698855-66698874 | None:intergenic | 45.0% | |
CCACTAAAATTGCCACCAAG+GGG | - | chr1.3:66698884-66698903 | None:intergenic | 45.0% | |
CCCACTAAAATTGCCACCAA+GGG | - | chr1.3:66698885-66698904 | None:intergenic | 45.0% | |
CTAAGTCCACACAGAGCAAT+GGG | + | chr1.3:66698905-66698924 | MS.gene006013:intron | 45.0% | |
GAAGGCAATAGAAGCAACTC+CGG | + | chr1.3:66698393-66698412 | MS.gene006013:CDS | 45.0% | |
TAAGTCCACACAGAGCAATG+GGG | + | chr1.3:66698906-66698925 | MS.gene006013:intron | 45.0% | |
TCAGGTCATTGAGGCTTCAT+CGG | + | chr1.3:66698435-66698454 | MS.gene006013:CDS | 45.0% | |
TCTTTGACCAAACCCATCTC+GGG | + | chr1.3:66698804-66698823 | MS.gene006013:intron | 45.0% | |
! | AGGTTCGATTTGATTCCCCT+TGG | + | chr1.3:66698866-66698885 | MS.gene006013:intron | 45.0% |
! | ATTCTTTGTCAAGGTGCTCC+TGG | + | chr1.3:66698684-66698703 | MS.gene006013:intron | 45.0% |
! | CCCTCGGATTAATCGATTCT+TGG | + | chr1.3:66698956-66698975 | MS.gene006013:intron | 45.0% |
! | GGTCCATTGGTGGTAATGTT+TGG | + | chr1.3:66699585-66699604 | MS.gene006013:CDS | 45.0% |
! | TTCGATTTGATTCCCCTTGG+TGG | + | chr1.3:66698869-66698888 | MS.gene006013:intron | 45.0% |
!! | CCCTTGGTGGCAATTTTAGT+GGG | + | chr1.3:66698882-66698901 | MS.gene006013:intron | 45.0% |
ACCTGGGAATTCCTTGGCTA+AGG | - | chr1.3:66698498-66698517 | None:intergenic | 50.0% | |
ACCTTAGCCAAGGAATTCCC+AGG | + | chr1.3:66698494-66698513 | MS.gene006013:CDS | 50.0% | |
AGAGTACGGTCAGGTCATTG+AGG | + | chr1.3:66698426-66698445 | MS.gene006013:CDS | 50.0% | |
CAAGTGTGACTCAGTGCCTT+GGG | + | chr1.3:66699564-66699583 | MS.gene006013:CDS | 50.0% | |
CATTACCACCAATGGACCCA+AGG | - | chr1.3:66699583-66699602 | None:intergenic | 50.0% | |
GACCTGACCGTACTCTTTGA+AGG | - | chr1.3:66698422-66698441 | None:intergenic | 50.0% | |
GCCCACTAAAATTGCCACCA+AGG | - | chr1.3:66698886-66698905 | None:intergenic | 50.0% | |
GCTAAGTCCACACAGAGCAA+TGG | + | chr1.3:66698904-66698923 | MS.gene006013:intron | 50.0% | |
GTCATTGAGGCTTCATCGGA+CGG | + | chr1.3:66698439-66698458 | MS.gene006013:CDS | 50.0% | |
TCAAGCTTAACCGTGGGACA+TGG | + | chr1.3:66699759-66699778 | MS.gene006013:CDS | 50.0% | |
TGGACATCCTCAATGGTAGG+AGG | - | chr1.3:66699710-66699729 | None:intergenic | 50.0% | |
TGTGCTCCTCTCAATGTCTC+AGG | + | chr1.3:66698846-66698865 | MS.gene006013:intron | 50.0% | |
! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr1.3:66698478-66698497 | None:intergenic | 50.0% |
! | ATCTGAAGCCAACCCGAGAT+GGG | - | chr1.3:66698819-66698838 | None:intergenic | 50.0% |
! | GACCTTCAAAGAGTACGGTC+AGG | + | chr1.3:66698417-66698436 | MS.gene006013:CDS | 50.0% |
!! | CCCCTTGGTGGCAATTTTAG+TGG | + | chr1.3:66698881-66698900 | MS.gene006013:intron | 50.0% |
!! | GGTATAGGTTGGTGACTAGC+AGG | - | chr1.3:66699453-66699472 | None:intergenic | 50.0% |
AATTCCACTGCCCACTTGCG+GGG | - | chr1.3:66698932-66698951 | None:intergenic | 55.0% | |
ACTCAGTGCCTTGGGTCCAT+TGG | + | chr1.3:66699572-66699591 | MS.gene006013:CDS | 55.0% | |
CAATTCCACTGCCCACTTGC+GGG | - | chr1.3:66698933-66698952 | None:intergenic | 55.0% | |
CCAATTCCACTGCCCACTTG+CGG | - | chr1.3:66698934-66698953 | None:intergenic | 55.0% | |
CCGGCGACCTTCAAAGAGTA+CGG | + | chr1.3:66698412-66698431 | MS.gene006013:CDS | 55.0% | |
GCAAGTGTGACTCAGTGCCT+TGG | + | chr1.3:66699563-66699582 | MS.gene006013:CDS | 55.0% | |
GCTCAGCTTGACCTTAGCCA+AGG | + | chr1.3:66698484-66698503 | MS.gene006013:CDS | 55.0% | |
TCATCGGACGGTGAGGAGTT+TGG | + | chr1.3:66698451-66698470 | MS.gene006013:CDS | 55.0% | |
TGACCAAACCCATCTCGGGT+TGG | + | chr1.3:66698808-66698827 | MS.gene006013:intron | 55.0% | |
! | AAGCCAACCCGAGATGGGTT+TGG | - | chr1.3:66698814-66698833 | None:intergenic | 55.0% |
! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr1.3:66698415-66698434 | None:intergenic | 55.0% |
! | GATCTGAAGCCAACCCGAGA+TGG | - | chr1.3:66698820-66698839 | None:intergenic | 55.0% |
! | GGCAGTGGAATTGGTTCCCT+CGG | + | chr1.3:66698940-66698959 | MS.gene006013:intron | 55.0% |
!! | CTCGGGTTGGCTTCAGATCT+TGG | + | chr1.3:66698821-66698840 | MS.gene006013:intron | 55.0% |
AACCGTGGGACATGGCATGC+TGG | + | chr1.3:66699767-66699786 | MS.gene006013:CDS | 60.0% | |
ACGGTCGTGAAGTCGCACAG+CGG | + | chr1.3:66699671-66699690 | MS.gene006013:CDS | 60.0% | |
CAGTGCCTTGGGTCCATTGG+TGG | + | chr1.3:66699575-66699594 | MS.gene006013:CDS | 60.0% | |
CCGCAAGTGGGCAGTGGAAT+TGG | + | chr1.3:66698931-66698950 | MS.gene006013:intron | 60.0% | |
GACCAGCATGCCATGTCCCA+CGG | - | chr1.3:66699772-66699791 | None:intergenic | 60.0% | |
GGGAGCAACTGAGTGCTTCC+AGG | - | chr1.3:66698705-66698724 | None:intergenic | 60.0% | |
TGAGGCTTCATCGGACGGTG+AGG | + | chr1.3:66698444-66698463 | MS.gene006013:CDS | 60.0% | |
AGCAATGGGGCCCCGCAAGT+GGG | + | chr1.3:66698919-66698938 | MS.gene006013:intron | 65.0% | |
CGGGGCCCCATTGCTCTGTG+TGG | - | chr1.3:66698914-66698933 | None:intergenic | 70.0% | |
GAGCAATGGGGCCCCGCAAG+TGG | + | chr1.3:66698918-66698937 | MS.gene006013:intron | 70.0% | |
! | GGGGCCCCGCAAGTGGGCAG+TGG | + | chr1.3:66698925-66698944 | MS.gene006013:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 66698376 | 66700079 | 66698376 | ID=MS.gene006013 |
chr1.3 | mRNA | 66698376 | 66700079 | 66698376 | ID=MS.gene006013.t1;Parent=MS.gene006013 |
chr1.3 | exon | 66698376 | 66698515 | 66698376 | ID=MS.gene006013.t1.exon1;Parent=MS.gene006013.t1 |
chr1.3 | CDS | 66698376 | 66698515 | 66698376 | ID=cds.MS.gene006013.t1;Parent=MS.gene006013.t1 |
chr1.3 | exon | 66699505 | 66699847 | 66699505 | ID=MS.gene006013.t1.exon2;Parent=MS.gene006013.t1 |
chr1.3 | CDS | 66699505 | 66699847 | 66699505 | ID=cds.MS.gene006013.t1;Parent=MS.gene006013.t1 |
chr1.3 | exon | 66700014 | 66700079 | 66700014 | ID=MS.gene006013.t1.exon3;Parent=MS.gene006013.t1 |
chr1.3 | CDS | 66700014 | 66700079 | 66700014 | ID=cds.MS.gene006013.t1;Parent=MS.gene006013.t1 |
Gene Sequence |
Protein sequence |