Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006013.t1 | XP_003591980.1 | 93.9 | 180 | 10 | 1 | 4 | 182 | 7 | 186 | 5.10E-92 | 347.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006013.t1 | G7I9N4 | 93.9 | 180 | 10 | 1 | 4 | 182 | 7 | 186 | 3.7e-92 | 347.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33997 | MS.gene006013 | PPI |
| MS.gene006014 | MS.gene006013 | PPI |
| MS.gene33993 | MS.gene006013 | PPI |
| MS.gene33994 | MS.gene006013 | PPI |
| MS.gene038651 | MS.gene006013 | PPI |
| MS.gene041739 | MS.gene006013 | PPI |
| MS.gene54750 | MS.gene006013 | PPI |
| MS.gene043625 | MS.gene006013 | PPI |
| MS.gene041740 | MS.gene006013 | PPI |
| MS.gene006013 | MS.gene041739 | PPI |
| MS.gene059328 | MS.gene006013 | PPI |
| MS.gene059329 | MS.gene006013 | PPI |
| MS.gene33992 | MS.gene006013 | PPI |
| MS.gene006015 | MS.gene006013 | PPI |
| MS.gene041741 | MS.gene006013 | PPI |
| MS.gene006013 | MS.gene006015 | PPI |
| MS.gene006013 | MS.gene33994 | PPI |
| MS.gene006013 | MS.gene043625 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006013.t1 | MTR_1g095890 | 92.473 | 186 | 10 | 2 | 1 | 182 | 1 | 186 | 2.61e-124 | 348 |
| MS.gene006013.t1 | MTR_1g095900 | 78.378 | 185 | 37 | 1 | 1 | 182 | 1 | 185 | 1.78e-104 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006013.t1 | AT2G35810 | 66.292 | 178 | 53 | 3 | 4 | 178 | 22 | 195 | 8.11e-85 | 248 |
| MS.gene006013.t1 | AT2G35810 | 66.292 | 178 | 53 | 3 | 4 | 178 | 22 | 195 | 8.11e-85 | 248 |
| MS.gene006013.t1 | AT2G35820 | 64.246 | 179 | 58 | 2 | 4 | 180 | 8 | 182 | 1.64e-83 | 245 |
| MS.gene006013.t1 | AT2G35820 | 64.246 | 179 | 58 | 2 | 4 | 180 | 98 | 272 | 5.92e-82 | 244 |
| MS.gene006013.t1 | AT2G35830 | 65.909 | 176 | 58 | 2 | 4 | 178 | 8 | 182 | 7.63e-82 | 241 |
| MS.gene006013.t1 | AT2G35830 | 65.730 | 178 | 50 | 4 | 4 | 178 | 8 | 177 | 4.32e-77 | 228 |
Find 49 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGTTAAGCTTGAGAAATT+TGG | 0.260726 | 1.3:-66699750 | None:intergenic |
| GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1.3:+66699593 | MS.gene006013:CDS |
| AATGAAATCAAAGATGATTC+AGG | 0.369755 | 1.3:+66699644 | MS.gene006013:CDS |
| TCATCGGACGGTGAGGAGTT+TGG | 0.393253 | 1.3:+66698451 | MS.gene006013:CDS |
| AACCTGAAACCTTGAAAACT+TGG | 0.407022 | 1.3:-66699727 | None:intergenic |
| GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 1.3:+66699585 | MS.gene006013:CDS |
| GACCTGACCGTACTCTTTGA+AGG | 0.444255 | 1.3:-66698419 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 1.3:+66699572 | MS.gene006013:CDS |
| AGGTCAAGCTGAGCATCGTT+TGG | 0.468746 | 1.3:-66698475 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 1.3:+66699575 | MS.gene006013:CDS |
| CAAGTGTGACTCAGTGCCTT+GGG | 0.479051 | 1.3:+66699564 | MS.gene006013:CDS |
| GCAAGTGTGACTCAGTGCCT+TGG | 0.493326 | 1.3:+66699563 | MS.gene006013:CDS |
| TCATTTGAATCAACAATGGA+TGG | 0.494781 | 1.3:-66699626 | None:intergenic |
| TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 1.3:+66699793 | MS.gene006013:CDS |
| ACCTTAGCCAAGGAATTCCC+AGG | 0.496730 | 1.3:+66698494 | MS.gene006013:CDS |
| ACCTGGGAATTCCTTGGCTA+AGG | 0.513339 | 1.3:-66698495 | None:intergenic |
| AATGGAGAGTGTGAAGGTGA+AGG | 0.517827 | 1.3:+66698375 | None:intergenic |
| ATGAAAACCTGGGAATTCCT+TGG | 0.524061 | 1.3:-66698501 | None:intergenic |
| TTATCTACCTCCTACCATTG+AGG | 0.529148 | 1.3:+66699700 | MS.gene006013:CDS |
| GTCATTGAGGCTTCATCGGA+CGG | 0.541534 | 1.3:+66698439 | MS.gene006013:CDS |
| AACCGTGGGACATGGCATGC+TGG | 0.544561 | 1.3:+66699767 | MS.gene006013:CDS |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | 1.3:-66699588 | None:intergenic |
| GAAAACTTGGACATCCTCAA+TGG | 0.552522 | 1.3:-66699714 | None:intergenic |
| TCAGGTCATTGAGGCTTCAT+CGG | 0.558495 | 1.3:+66698435 | MS.gene006013:CDS |
| TCAAGCTTAACCGTGGGACA+TGG | 0.558912 | 1.3:+66699759 | MS.gene006013:CDS |
| GATTTCATTTGAATCAACAA+TGG | 0.567401 | 1.3:-66699630 | None:intergenic |
| GACCTTCAAAGAGTACGGTC+AGG | 0.570961 | 1.3:+66698417 | MS.gene006013:CDS |
| GTCCTTCTTAAAGTTGTGTG+TGG | 0.574527 | 1.3:-66700027 | None:intergenic |
| TACCACACACAACTTTAAGA+AGG | 0.575142 | 1.3:+66700025 | MS.gene006013:CDS |
| CCGTACTCTTTGAAGGTCGC+CGG | 0.579027 | 1.3:-66698412 | None:intergenic |
| CACAACTTTAAGAAGGACAA+TGG | 0.594981 | 1.3:+66700032 | MS.gene006013:CDS |
| GAAGGGAATGGAGAGTGTGA+AGG | 0.597978 | 1.3:+66698369 | None:intergenic |
| CAAAGATGATTCAGGCAAGA+CGG | 0.600075 | 1.3:+66699652 | MS.gene006013:CDS |
| TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1.3:+66699598 | MS.gene006013:CDS |
| GACCAGCATGCCATGTCCCA+CGG | 0.605299 | 1.3:-66699769 | None:intergenic |
| CCGGCGACCTTCAAAGAGTA+CGG | 0.605471 | 1.3:+66698412 | MS.gene006013:CDS |
| GTGATATTAGAAAACTCAAG+TGG | 0.611037 | 1.3:-66699533 | None:intergenic |
| CTTTAAGAAGGACAATGGAG+TGG | 0.614786 | 1.3:+66700037 | MS.gene006013:CDS |
| GAAGGCAATAGAAGCAACTC+CGG | 0.616815 | 1.3:+66698393 | MS.gene006013:CDS |
| AAATTTCTCAAGCTTAACCG+TGG | 0.618191 | 1.3:+66699752 | MS.gene006013:CDS |
| ACTTGGACATCCTCAATGGT+AGG | 0.620998 | 1.3:-66699710 | None:intergenic |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | 1.3:-66699580 | None:intergenic |
| ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 1.3:-66699791 | None:intergenic |
| GCTCAGCTTGACCTTAGCCA+AGG | 0.638940 | 1.3:+66698484 | MS.gene006013:CDS |
| AATTTCTCAAGCTTAACCGT+GGG | 0.640376 | 1.3:+66699753 | MS.gene006013:CDS |
| TGAGGCTTCATCGGACGGTG+AGG | 0.641464 | 1.3:+66698444 | MS.gene006013:CDS |
| TGGACATCCTCAATGGTAGG+AGG | 0.650915 | 1.3:-66699707 | None:intergenic |
| AGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 1.3:+66698426 | MS.gene006013:CDS |
| ACGGTCGTGAAGTCGCACAG+CGG | 0.779451 | 1.3:+66699671 | MS.gene006013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAAATTCAAAATGAA+TGG | - | chr1.3:66698591-66698610 | None:intergenic | 10.0% |
| !!! | AAAGTTATTTTGATTAAAAA+AGG | - | chr1.3:66698726-66698745 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTGATTAAAAAA+GGG | - | chr1.3:66698725-66698744 | None:intergenic | 10.0% |
| !! | AAATTAATTCCAATAAGTTA+GGG | - | chr1.3:66699474-66699493 | None:intergenic | 15.0% |
| !! | TAACTTAAGATATTTCATAA+AGG | + | chr1.3:66699044-66699063 | MS.gene006013:intron | 15.0% |
| !!! | TATTTGAAAAGAAATTTTGT+TGG | - | chr1.3:66698616-66698635 | None:intergenic | 15.0% |
| !!! | TATTTTTTTGGTCTTTTTTA+GGG | + | chr1.3:66699943-66699962 | MS.gene006013:intron | 15.0% |
| !!! | TTATTTTTTTGGTCTTTTTT+AGG | + | chr1.3:66699942-66699961 | MS.gene006013:intron | 15.0% |
| !! | CAAATTAATTCCAATAAGTT+AGG | - | chr1.3:66699475-66699494 | None:intergenic | 20.0% |
| !! | TAAATTAAATGACAGCTTTA+TGG | - | chr1.3:66698660-66698679 | None:intergenic | 20.0% |
| !! | TGAAATATCTTAAGTTATGT+TGG | - | chr1.3:66699041-66699060 | None:intergenic | 20.0% |
| !!! | CAAAATTTTCATTTGAATTG+AGG | - | chr1.3:66698546-66698565 | None:intergenic | 20.0% |
| !!! | CTCAATTCAAATGAAAATTT+TGG | + | chr1.3:66698544-66698563 | MS.gene006013:intron | 20.0% |
| !!! | GGAATTAATTTGTGTTTATT+AGG | + | chr1.3:66699483-66699502 | MS.gene006013:intron | 20.0% |
| !!! | TTGTGCTTATCTTATTTTTT+TGG | + | chr1.3:66699931-66699950 | MS.gene006013:intron | 20.0% |
| !!! | TTTATTGTTTTATCTGATCT+TGG | + | chr1.3:66699277-66699296 | MS.gene006013:intron | 20.0% |
| ! | AATGAAATCAAAGATGATTC+AGG | + | chr1.3:66699644-66699663 | MS.gene006013:CDS | 25.0% |
| ! | ATAGTAATTGCAATCAACTT+TGG | + | chr1.3:66699231-66699250 | MS.gene006013:intron | 25.0% |
| ! | ATGCTCTTTACAATAATACA+TGG | + | chr1.3:66699905-66699924 | MS.gene006013:intron | 25.0% |
| ! | ATGTTGTTGTGATTTATGTA+TGG | + | chr1.3:66699974-66699993 | MS.gene006013:intron | 25.0% |
| ! | ATTACATTAAACACTGTCAT+TGG | - | chr1.3:66699015-66699034 | None:intergenic | 25.0% |
| ! | ATTGCAATTACTATTGATAG+TGG | - | chr1.3:66699225-66699244 | None:intergenic | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr1.3:66699794-66699813 | None:intergenic | 25.0% |
| ! | ATTTAAGTGATTCTTTGTCA+AGG | + | chr1.3:66698675-66698694 | MS.gene006013:intron | 25.0% |
| ! | CATAATGTCAATCTAAATTG+AGG | - | chr1.3:66699423-66699442 | None:intergenic | 25.0% |
| ! | GATTTCATTTGAATCAACAA+TGG | - | chr1.3:66699633-66699652 | None:intergenic | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr1.3:66699793-66699812 | MS.gene006013:CDS | 25.0% |
| ! | TGCTCTTTACAATAATACAT+GGG | + | chr1.3:66699906-66699925 | MS.gene006013:intron | 25.0% |
| !! | ATGATTTTGTATTATGCCTT+TGG | - | chr1.3:66699151-66699170 | None:intergenic | 25.0% |
| !!! | TATGGTTTTTTATTGTGTTC+AGG | + | chr1.3:66699992-66700011 | MS.gene006013:intron | 25.0% |
| ATTCCAATAAGTTAGGGTAT+AGG | - | chr1.3:66699468-66699487 | None:intergenic | 30.0% | |
| CATGTAACACTTTAGTGAAA+GGG | - | chr1.3:66699867-66699886 | None:intergenic | 30.0% | |
| GATGCAAAATATTGATCCAA+AGG | + | chr1.3:66699132-66699151 | MS.gene006013:intron | 30.0% | |
| GTGATATTAGAAAACTCAAG+TGG | - | chr1.3:66699536-66699555 | None:intergenic | 30.0% | |
| GTTGTTTAAATTCACAGAGA+TGG | + | chr1.3:66699253-66699272 | MS.gene006013:intron | 30.0% | |
| TACATCAGCTTAATTTAGCT+GGG | + | chr1.3:66699383-66699402 | MS.gene006013:intron | 30.0% | |
| TCATTTGAATCAACAATGGA+TGG | - | chr1.3:66699629-66699648 | None:intergenic | 30.0% | |
| TTACATCAGCTTAATTTAGC+TGG | + | chr1.3:66699382-66699401 | MS.gene006013:intron | 30.0% | |
| AAATTTCTCAAGCTTAACCG+TGG | + | chr1.3:66699752-66699771 | MS.gene006013:CDS | 35.0% | |
| AACCTGAAACCTTGAAAACT+TGG | - | chr1.3:66699730-66699749 | None:intergenic | 35.0% | |
| AAGTGTAAAGCTTGAATCTG+TGG | + | chr1.3:66699185-66699204 | MS.gene006013:intron | 35.0% | |
| AATTTCTCAAGCTTAACCGT+GGG | + | chr1.3:66699753-66699772 | MS.gene006013:CDS | 35.0% | |
| ACGGTTAAGCTTGAGAAATT+TGG | - | chr1.3:66699753-66699772 | None:intergenic | 35.0% | |
| AGAAGTGAAGAATGAAAACC+TGG | - | chr1.3:66698515-66698534 | None:intergenic | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | chr1.3:66699591-66699610 | None:intergenic | 35.0% | |
| CAACCTATACCCTAACTTAT+TGG | + | chr1.3:66699462-66699481 | MS.gene006013:intron | 35.0% | |
| CAATAAGTTAGGGTATAGGT+TGG | - | chr1.3:66699464-66699483 | None:intergenic | 35.0% | |
| GAAGTGAAGAATGAAAACCT+GGG | - | chr1.3:66698514-66698533 | None:intergenic | 35.0% | |
| GCATGTAACACTTTAGTGAA+AGG | - | chr1.3:66699868-66699887 | None:intergenic | 35.0% | |
| TAACACTTTAGTGAAAGGGA+GGG | - | chr1.3:66699863-66699882 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | chr1.3:66699598-66699617 | MS.gene006013:CDS | 35.0% | |
| ! | CACAACTTTAAGAAGGACAA+TGG | + | chr1.3:66700032-66700051 | MS.gene006013:CDS | 35.0% |
| ! | GCATGTTCTTGTTATGCATA+TGG | - | chr1.3:66698762-66698781 | None:intergenic | 35.0% |
| ! | GGATTAATCGATTCTTGGAT+TGG | + | chr1.3:66698961-66698980 | MS.gene006013:intron | 35.0% |
| ! | TACCACACACAACTTTAAGA+AGG | + | chr1.3:66700025-66700044 | MS.gene006013:CDS | 35.0% |
| ! | TCTTGTTATGCATATGGCAT+TGG | - | chr1.3:66698756-66698775 | None:intergenic | 35.0% |
| ! | TTTTTATTGTGTTCAGGTGG+TGG | + | chr1.3:66699998-66700017 | MS.gene006013:intron | 35.0% |
| !!! | GGTTTTTTATTGTGTTCAGG+TGG | + | chr1.3:66699995-66700014 | MS.gene006013:intron | 35.0% |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr1.3:66698504-66698523 | None:intergenic | 40.0% | |
| CAAAGATGATTCAGGCAAGA+CGG | + | chr1.3:66699652-66699671 | MS.gene006013:CDS | 40.0% | |
| CCAAGAATCGATTAATCCGA+GGG | - | chr1.3:66698959-66698978 | None:intergenic | 40.0% | |
| GAAAACTTGGACATCCTCAA+TGG | - | chr1.3:66699717-66699736 | None:intergenic | 40.0% | |
| GTAACACTTTAGTGAAAGGG+AGG | - | chr1.3:66699864-66699883 | None:intergenic | 40.0% | |
| GTCCTTCTTAAAGTTGTGTG+TGG | - | chr1.3:66700030-66700049 | None:intergenic | 40.0% | |
| GTCGTAATTTCTCGCTGTTT+CGG | + | chr1.3:66699302-66699321 | MS.gene006013:intron | 40.0% | |
| TCCAAGAATCGATTAATCCG+AGG | - | chr1.3:66698960-66698979 | None:intergenic | 40.0% | |
| TGGAGATCAGTGAGACTATT+TGG | - | chr1.3:66698571-66698590 | None:intergenic | 40.0% | |
| TTATCTACCTCCTACCATTG+AGG | + | chr1.3:66699700-66699719 | MS.gene006013:CDS | 40.0% | |
| TTCTTTGACCAAACCCATCT+CGG | + | chr1.3:66698803-66698822 | MS.gene006013:intron | 40.0% | |
| ! | AATGACAGCTTTATGGCGAT+AGG | - | chr1.3:66698653-66698672 | None:intergenic | 40.0% |
| ! | ACTAAAGTGTTACATGCACC+TGG | + | chr1.3:66699871-66699890 | MS.gene006013:intron | 40.0% |
| ! | ATGACAGCTTTATGGCGATA+GGG | - | chr1.3:66698652-66698671 | None:intergenic | 40.0% |
| ! | CTTTAAGAAGGACAATGGAG+TGG | + | chr1.3:66700037-66700056 | MS.gene006013:CDS | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1.3:66699593-66699612 | MS.gene006013:CDS | 40.0% |
| ! | TGAGGATGTCCAAGTTTTCA+AGG | + | chr1.3:66699718-66699737 | MS.gene006013:CDS | 40.0% |
| !! | AGAGCATTGCAAATGAATCC+AGG | - | chr1.3:66699892-66699911 | None:intergenic | 40.0% |
| !! | GTCCAAGTTTTCAAGGTTTC+AGG | + | chr1.3:66699725-66699744 | MS.gene006013:CDS | 40.0% |
| ACTTGGACATCCTCAATGGT+AGG | - | chr1.3:66699713-66699732 | None:intergenic | 45.0% | |
| ATCGAACCTGAGACATTGAG+AGG | - | chr1.3:66698855-66698874 | None:intergenic | 45.0% | |
| CCACTAAAATTGCCACCAAG+GGG | - | chr1.3:66698884-66698903 | None:intergenic | 45.0% | |
| CCCACTAAAATTGCCACCAA+GGG | - | chr1.3:66698885-66698904 | None:intergenic | 45.0% | |
| CTAAGTCCACACAGAGCAAT+GGG | + | chr1.3:66698905-66698924 | MS.gene006013:intron | 45.0% | |
| GAAGGCAATAGAAGCAACTC+CGG | + | chr1.3:66698393-66698412 | MS.gene006013:CDS | 45.0% | |
| TAAGTCCACACAGAGCAATG+GGG | + | chr1.3:66698906-66698925 | MS.gene006013:intron | 45.0% | |
| TCAGGTCATTGAGGCTTCAT+CGG | + | chr1.3:66698435-66698454 | MS.gene006013:CDS | 45.0% | |
| TCTTTGACCAAACCCATCTC+GGG | + | chr1.3:66698804-66698823 | MS.gene006013:intron | 45.0% | |
| ! | AGGTTCGATTTGATTCCCCT+TGG | + | chr1.3:66698866-66698885 | MS.gene006013:intron | 45.0% |
| ! | ATTCTTTGTCAAGGTGCTCC+TGG | + | chr1.3:66698684-66698703 | MS.gene006013:intron | 45.0% |
| ! | CCCTCGGATTAATCGATTCT+TGG | + | chr1.3:66698956-66698975 | MS.gene006013:intron | 45.0% |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr1.3:66699585-66699604 | MS.gene006013:CDS | 45.0% |
| ! | TTCGATTTGATTCCCCTTGG+TGG | + | chr1.3:66698869-66698888 | MS.gene006013:intron | 45.0% |
| !! | CCCTTGGTGGCAATTTTAGT+GGG | + | chr1.3:66698882-66698901 | MS.gene006013:intron | 45.0% |
| ACCTGGGAATTCCTTGGCTA+AGG | - | chr1.3:66698498-66698517 | None:intergenic | 50.0% | |
| ACCTTAGCCAAGGAATTCCC+AGG | + | chr1.3:66698494-66698513 | MS.gene006013:CDS | 50.0% | |
| AGAGTACGGTCAGGTCATTG+AGG | + | chr1.3:66698426-66698445 | MS.gene006013:CDS | 50.0% | |
| CAAGTGTGACTCAGTGCCTT+GGG | + | chr1.3:66699564-66699583 | MS.gene006013:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr1.3:66699583-66699602 | None:intergenic | 50.0% | |
| GACCTGACCGTACTCTTTGA+AGG | - | chr1.3:66698422-66698441 | None:intergenic | 50.0% | |
| GCCCACTAAAATTGCCACCA+AGG | - | chr1.3:66698886-66698905 | None:intergenic | 50.0% | |
| GCTAAGTCCACACAGAGCAA+TGG | + | chr1.3:66698904-66698923 | MS.gene006013:intron | 50.0% | |
| GTCATTGAGGCTTCATCGGA+CGG | + | chr1.3:66698439-66698458 | MS.gene006013:CDS | 50.0% | |
| TCAAGCTTAACCGTGGGACA+TGG | + | chr1.3:66699759-66699778 | MS.gene006013:CDS | 50.0% | |
| TGGACATCCTCAATGGTAGG+AGG | - | chr1.3:66699710-66699729 | None:intergenic | 50.0% | |
| TGTGCTCCTCTCAATGTCTC+AGG | + | chr1.3:66698846-66698865 | MS.gene006013:intron | 50.0% | |
| ! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr1.3:66698478-66698497 | None:intergenic | 50.0% |
| ! | ATCTGAAGCCAACCCGAGAT+GGG | - | chr1.3:66698819-66698838 | None:intergenic | 50.0% |
| ! | GACCTTCAAAGAGTACGGTC+AGG | + | chr1.3:66698417-66698436 | MS.gene006013:CDS | 50.0% |
| !! | CCCCTTGGTGGCAATTTTAG+TGG | + | chr1.3:66698881-66698900 | MS.gene006013:intron | 50.0% |
| !! | GGTATAGGTTGGTGACTAGC+AGG | - | chr1.3:66699453-66699472 | None:intergenic | 50.0% |
| AATTCCACTGCCCACTTGCG+GGG | - | chr1.3:66698932-66698951 | None:intergenic | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr1.3:66699572-66699591 | MS.gene006013:CDS | 55.0% | |
| CAATTCCACTGCCCACTTGC+GGG | - | chr1.3:66698933-66698952 | None:intergenic | 55.0% | |
| CCAATTCCACTGCCCACTTG+CGG | - | chr1.3:66698934-66698953 | None:intergenic | 55.0% | |
| CCGGCGACCTTCAAAGAGTA+CGG | + | chr1.3:66698412-66698431 | MS.gene006013:CDS | 55.0% | |
| GCAAGTGTGACTCAGTGCCT+TGG | + | chr1.3:66699563-66699582 | MS.gene006013:CDS | 55.0% | |
| GCTCAGCTTGACCTTAGCCA+AGG | + | chr1.3:66698484-66698503 | MS.gene006013:CDS | 55.0% | |
| TCATCGGACGGTGAGGAGTT+TGG | + | chr1.3:66698451-66698470 | MS.gene006013:CDS | 55.0% | |
| TGACCAAACCCATCTCGGGT+TGG | + | chr1.3:66698808-66698827 | MS.gene006013:intron | 55.0% | |
| ! | AAGCCAACCCGAGATGGGTT+TGG | - | chr1.3:66698814-66698833 | None:intergenic | 55.0% |
| ! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr1.3:66698415-66698434 | None:intergenic | 55.0% |
| ! | GATCTGAAGCCAACCCGAGA+TGG | - | chr1.3:66698820-66698839 | None:intergenic | 55.0% |
| ! | GGCAGTGGAATTGGTTCCCT+CGG | + | chr1.3:66698940-66698959 | MS.gene006013:intron | 55.0% |
| !! | CTCGGGTTGGCTTCAGATCT+TGG | + | chr1.3:66698821-66698840 | MS.gene006013:intron | 55.0% |
| AACCGTGGGACATGGCATGC+TGG | + | chr1.3:66699767-66699786 | MS.gene006013:CDS | 60.0% | |
| ACGGTCGTGAAGTCGCACAG+CGG | + | chr1.3:66699671-66699690 | MS.gene006013:CDS | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr1.3:66699575-66699594 | MS.gene006013:CDS | 60.0% | |
| CCGCAAGTGGGCAGTGGAAT+TGG | + | chr1.3:66698931-66698950 | MS.gene006013:intron | 60.0% | |
| GACCAGCATGCCATGTCCCA+CGG | - | chr1.3:66699772-66699791 | None:intergenic | 60.0% | |
| GGGAGCAACTGAGTGCTTCC+AGG | - | chr1.3:66698705-66698724 | None:intergenic | 60.0% | |
| TGAGGCTTCATCGGACGGTG+AGG | + | chr1.3:66698444-66698463 | MS.gene006013:CDS | 60.0% | |
| AGCAATGGGGCCCCGCAAGT+GGG | + | chr1.3:66698919-66698938 | MS.gene006013:intron | 65.0% | |
| CGGGGCCCCATTGCTCTGTG+TGG | - | chr1.3:66698914-66698933 | None:intergenic | 70.0% | |
| GAGCAATGGGGCCCCGCAAG+TGG | + | chr1.3:66698918-66698937 | MS.gene006013:intron | 70.0% | |
| ! | GGGGCCCCGCAAGTGGGCAG+TGG | + | chr1.3:66698925-66698944 | MS.gene006013:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 66698376 | 66700079 | 66698376 | ID=MS.gene006013 |
| chr1.3 | mRNA | 66698376 | 66700079 | 66698376 | ID=MS.gene006013.t1;Parent=MS.gene006013 |
| chr1.3 | exon | 66698376 | 66698515 | 66698376 | ID=MS.gene006013.t1.exon1;Parent=MS.gene006013.t1 |
| chr1.3 | CDS | 66698376 | 66698515 | 66698376 | ID=cds.MS.gene006013.t1;Parent=MS.gene006013.t1 |
| chr1.3 | exon | 66699505 | 66699847 | 66699505 | ID=MS.gene006013.t1.exon2;Parent=MS.gene006013.t1 |
| chr1.3 | CDS | 66699505 | 66699847 | 66699505 | ID=cds.MS.gene006013.t1;Parent=MS.gene006013.t1 |
| chr1.3 | exon | 66700014 | 66700079 | 66700014 | ID=MS.gene006013.t1.exon3;Parent=MS.gene006013.t1 |
| chr1.3 | CDS | 66700014 | 66700079 | 66700014 | ID=cds.MS.gene006013.t1;Parent=MS.gene006013.t1 |
| Gene Sequence |
| Protein sequence |