Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33997.t1 | XP_003591980.1 | 93.9 | 165 | 9 | 1 | 4 | 167 | 7 | 171 | 4.80E-84 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33997.t1 | G7I9N4 | 93.9 | 165 | 9 | 1 | 4 | 167 | 7 | 171 | 3.4e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059330 | MS.gene33997 | 0.84013 | 1.05E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33997 | MS.gene006013 | PPI |
| MS.gene33997 | MS.gene059329 | PPI |
| MS.gene33997 | MS.gene038651 | PPI |
| MS.gene33997 | MS.gene059328 | PPI |
| MS.gene006014 | MS.gene33997 | PPI |
| MS.gene33997 | MS.gene33992 | PPI |
| MS.gene33997 | MS.gene041739 | PPI |
| MS.gene33997 | MS.gene54750 | PPI |
| MS.gene33997 | MS.gene041740 | PPI |
| MS.gene33997 | MS.gene33993 | PPI |
| MS.gene33997 | MS.gene041741 | PPI |
| MS.gene33997 | MS.gene006015 | PPI |
| MS.gene33997 | MS.gene33994 | PPI |
| MS.gene33997 | MS.gene043625 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33997.t1 | MTR_1g095890 | 91.860 | 172 | 10 | 2 | 1 | 168 | 1 | 172 | 9.70e-115 | 323 |
| MS.gene33997.t1 | MTR_1g095900 | 76.608 | 171 | 37 | 1 | 1 | 168 | 1 | 171 | 1.24e-94 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33997.t1 | AT2G35820 | 66.265 | 166 | 50 | 2 | 4 | 167 | 8 | 169 | 1.24e-79 | 234 |
| MS.gene33997.t1 | AT2G35810 | 65.476 | 168 | 51 | 3 | 4 | 168 | 22 | 185 | 1.12e-78 | 232 |
| MS.gene33997.t1 | AT2G35810 | 65.476 | 168 | 51 | 3 | 4 | 168 | 22 | 185 | 1.12e-78 | 232 |
| MS.gene33997.t1 | AT2G35820 | 66.265 | 166 | 50 | 2 | 4 | 167 | 98 | 259 | 4.05e-78 | 234 |
| MS.gene33997.t1 | AT2G35830 | 65.060 | 166 | 56 | 2 | 4 | 168 | 8 | 172 | 8.56e-76 | 224 |
| MS.gene33997.t1 | AT2G35830 | 63.855 | 166 | 53 | 3 | 4 | 168 | 8 | 167 | 3.81e-71 | 213 |
Find 47 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGTTAAGCTTGAGAAATT+TGG | 0.260726 | 1.4:-74479928 | None:intergenic |
| GGTGGTAATGTTTGGTATCT+TGG | 0.281153 | 1.4:+74479771 | MS.gene33997:CDS |
| TCATCGGACGGTGAGGGATT+TGG | 0.343558 | 1.4:+74477361 | MS.gene33997:CDS |
| AATGAAATCAAAGATGATTC+AGG | 0.369755 | 1.4:+74479822 | MS.gene33997:CDS |
| AACCTGAAACCTTGAAAACT+TGG | 0.407022 | 1.4:-74479905 | None:intergenic |
| GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 1.4:+74479763 | MS.gene33997:CDS |
| GACCTGACCGTACTCTTTGA+AGG | 0.444255 | 1.4:-74477329 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 1.4:+74479750 | MS.gene33997:CDS |
| AGGTCAAGCTGAGCATCGTT+TGG | 0.468746 | 1.4:-74477385 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 1.4:+74479753 | MS.gene33997:CDS |
| CAAGTGTGACTCAGTGCCTT+GGG | 0.479051 | 1.4:+74479742 | MS.gene33997:CDS |
| GCAAGTGTGACTCAGTGCCT+TGG | 0.493326 | 1.4:+74479741 | MS.gene33997:CDS |
| TCATTTGAATCAACAATGGA+TGG | 0.494781 | 1.4:-74479804 | None:intergenic |
| GAAGGCAATTGAAGCAGCTC+CGG | 0.496049 | 1.4:+74477303 | MS.gene33997:CDS |
| TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 1.4:+74479971 | MS.gene33997:CDS |
| ACCTTAGCCAAGGAATTCCC+AGG | 0.496730 | 1.4:+74477404 | MS.gene33997:CDS |
| ACCTGGGAATTCCTTGGCTA+AGG | 0.513339 | 1.4:-74477405 | None:intergenic |
| AATGGAGAGTGTGAAGGTGA+AGG | 0.517827 | 1.4:+74477285 | None:intergenic |
| ATGAAAACCTGGGAATTCCT+TGG | 0.524061 | 1.4:-74477411 | None:intergenic |
| TTGTCCTTCTTAAAGTTGTG+TGG | 0.532329 | 1.4:-74480205 | None:intergenic |
| GTCATTGAGGCTTCATCGGA+CGG | 0.541534 | 1.4:+74477349 | MS.gene33997:CDS |
| AACCGTGGGACATGGCATGC+TGG | 0.544561 | 1.4:+74479945 | MS.gene33997:CDS |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | 1.4:-74479766 | None:intergenic |
| GAAAACTTGGACATCCTCAA+TGG | 0.552522 | 1.4:-74479892 | None:intergenic |
| TTATCTACCTCCTACCATTG+AGG | 0.558166 | 1.4:+74479878 | MS.gene33997:CDS |
| TCAGGTCATTGAGGCTTCAT+CGG | 0.558495 | 1.4:+74477345 | MS.gene33997:CDS |
| TCAAGCTTAACCGTGGGACA+TGG | 0.558912 | 1.4:+74479937 | MS.gene33997:CDS |
| GATTTCATTTGAATCAACAA+TGG | 0.567401 | 1.4:-74479808 | None:intergenic |
| CCGTACTCTTTGAAGGTCGC+CGG | 0.569217 | 1.4:-74477322 | None:intergenic |
| GACCTTCAAAGAGTACGGTC+AGG | 0.570961 | 1.4:+74477327 | MS.gene33997:CDS |
| GAGGCTTCATCGGACGGTGA+GGG | 0.572018 | 1.4:+74477355 | MS.gene33997:CDS |
| CCGGCGACCTTCAAAGAGTA+CGG | 0.593053 | 1.4:+74477322 | MS.gene33997:CDS |
| GAAGGGAATGGAGAGTGTGA+AGG | 0.597978 | 1.4:+74477279 | None:intergenic |
| CAAAGATGATTCAGGCAAGA+CGG | 0.600075 | 1.4:+74479830 | MS.gene33997:CDS |
| TGAGGCTTCATCGGACGGTG+AGG | 0.602563 | 1.4:+74477354 | MS.gene33997:CDS |
| GACCAGCATGCCATGTCCCA+CGG | 0.605299 | 1.4:-74479947 | None:intergenic |
| GTGATATTAGAAAACTCAAG+TGG | 0.611037 | 1.4:-74479711 | None:intergenic |
| AAATTTCTCAAGCTTAACCG+TGG | 0.618191 | 1.4:+74479930 | MS.gene33997:CDS |
| ACTTGGACATCCTCAATGGT+AGG | 0.620998 | 1.4:-74479888 | None:intergenic |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | 1.4:-74479758 | None:intergenic |
| ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 1.4:-74479969 | None:intergenic |
| TAATGTTTGGTATCTTGGAG+CGG | 0.623808 | 1.4:+74479776 | MS.gene33997:CDS |
| GCTCAGCTTGACCTTAGCCA+AGG | 0.638940 | 1.4:+74477394 | MS.gene33997:CDS |
| AATTTCTCAAGCTTAACCGT+GGG | 0.640376 | 1.4:+74479931 | MS.gene33997:CDS |
| TGGACATCCTCAATGGTAGG+AGG | 0.650915 | 1.4:-74479885 | None:intergenic |
| AGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 1.4:+74477336 | MS.gene33997:CDS |
| ACGGTCGTGAAGTCGCACAG+TGG | 0.761158 | 1.4:+74479849 | MS.gene33997:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTTATATTTTTTATT+GGG | + | chr1.4:74478521-74478540 | MS.gene33997:intron | 0.0% |
| !!! | TAAAAATTTATATTTTTTAT+TGG | + | chr1.4:74478520-74478539 | MS.gene33997:intron | 0.0% |
| !! | GTATATTTCTTAAAAAAAAA+TGG | + | chr1.4:74478292-74478311 | MS.gene33997:intron | 10.0% |
| !! | TTAATTAAATTCAAAATGAA+TGG | - | chr1.4:74477501-74477520 | None:intergenic | 10.0% |
| !!! | AAAGTTATTTTGATTAAAAA+AGG | - | chr1.4:74477663-74477682 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTGATTAAAAAA+GGG | - | chr1.4:74477662-74477681 | None:intergenic | 10.0% |
| !! | AAAAACAAATAACATATGTA+TGG | + | chr1.4:74478074-74478093 | MS.gene33997:intron | 15.0% |
| !! | AAATTAATTCCAATAAGTTA+GGG | - | chr1.4:74479652-74479671 | None:intergenic | 15.0% |
| !! | TAACTTAAGATATTTCATAA+AGG | + | chr1.4:74479218-74479237 | MS.gene33997:intron | 15.0% |
| !!! | ATACATATGTTATTTGTTTT+TGG | - | chr1.4:74478075-74478094 | None:intergenic | 15.0% |
| !!! | TATTTGAAAAGAAATTTTGT+TGG | - | chr1.4:74477526-74477545 | None:intergenic | 15.0% |
| !!! | TATTTTTTTGGTCTTTTTTA+GGG | + | chr1.4:74480121-74480140 | MS.gene33997:intron | 15.0% |
| !!! | TTATTTTTTTGGTCTTTTTT+AGG | + | chr1.4:74480120-74480139 | MS.gene33997:intron | 15.0% |
| !!! | TTTTACTCTTTTTTTTTTAG+AGG | + | chr1.4:74478348-74478367 | MS.gene33997:intron | 15.0% |
| !! | ATATAACAAATGTGTTTGAT+TGG | - | chr1.4:74478220-74478239 | None:intergenic | 20.0% |
| !! | ATATACCTAGTTATTTATCT+CGG | - | chr1.4:74478932-74478951 | None:intergenic | 20.0% |
| !! | CAAATTAATTCCAATAAGTT+AGG | - | chr1.4:74479653-74479672 | None:intergenic | 20.0% |
| !! | TAAATTAAATGACAGCTTTA+TGG | - | chr1.4:74477570-74477589 | None:intergenic | 20.0% |
| !! | TGAAATATCTTAAGTTATGT+TGG | - | chr1.4:74479215-74479234 | None:intergenic | 20.0% |
| !!! | CAAAATTTTCATTTGAATTG+AGG | - | chr1.4:74477456-74477475 | None:intergenic | 20.0% |
| !!! | CTCAATTCAAATGAAAATTT+TGG | + | chr1.4:74477454-74477473 | MS.gene33997:intron | 20.0% |
| !!! | TGTTATAGACTTTTTTTTGA+AGG | + | chr1.4:74478146-74478165 | MS.gene33997:intron | 20.0% |
| !!! | TTGTGCTTATCTTATTTTTT+TGG | + | chr1.4:74480109-74480128 | MS.gene33997:intron | 20.0% |
| !!! | TTTATTGTTTTATCTGATCT+TGG | + | chr1.4:74479451-74479470 | MS.gene33997:intron | 20.0% |
| ! | AATGAAATCAAAGATGATTC+AGG | + | chr1.4:74479822-74479841 | MS.gene33997:CDS | 25.0% |
| ! | ACATGCATAATTATATGCAT+GGG | - | chr1.4:74478716-74478735 | None:intergenic | 25.0% |
| ! | ATAGTAATTGCAATCAACTT+TGG | + | chr1.4:74479405-74479424 | MS.gene33997:intron | 25.0% |
| ! | ATCAGCTTAATTAATTTAGC+TGG | + | chr1.4:74479560-74479579 | MS.gene33997:intron | 25.0% |
| ! | ATCTAATTAGTATGCATCAA+TGG | - | chr1.4:74478908-74478927 | None:intergenic | 25.0% |
| ! | ATCTTCACAAATAAGTTAGA+TGG | + | chr1.4:74478268-74478287 | MS.gene33997:intron | 25.0% |
| ! | ATGCTCTTTACAATAATACA+TGG | + | chr1.4:74480083-74480102 | MS.gene33997:intron | 25.0% |
| ! | ATGTATGGAATTCATGTTAT+AGG | + | chr1.4:74478089-74478108 | MS.gene33997:intron | 25.0% |
| ! | ATGTTGTTGTGATTTATGTA+TGG | + | chr1.4:74480152-74480171 | MS.gene33997:intron | 25.0% |
| ! | ATTACATTAAACACTGTCAT+TGG | - | chr1.4:74479189-74479208 | None:intergenic | 25.0% |
| ! | ATTGCAATTACTATTGATAG+TGG | - | chr1.4:74479399-74479418 | None:intergenic | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr1.4:74479972-74479991 | None:intergenic | 25.0% |
| ! | ATTTAAGTGATTCTTTGTCA+AGG | + | chr1.4:74477585-74477604 | MS.gene33997:intron | 25.0% |
| ! | CATAATGTCAATCTAAATTG+AGG | - | chr1.4:74479601-74479620 | None:intergenic | 25.0% |
| ! | GATTTCATTTGAATCAACAA+TGG | - | chr1.4:74479811-74479830 | None:intergenic | 25.0% |
| ! | TCAGCTTAATTAATTTAGCT+GGG | + | chr1.4:74479561-74479580 | MS.gene33997:intron | 25.0% |
| ! | TCTAATTAGTATGCATCAAT+GGG | - | chr1.4:74478907-74478926 | None:intergenic | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr1.4:74479971-74479990 | MS.gene33997:CDS | 25.0% |
| ! | TGCTCTTTACAATAATACAT+GGG | + | chr1.4:74480084-74480103 | MS.gene33997:intron | 25.0% |
| ! | TGTATGGAATTCATGTTATA+GGG | + | chr1.4:74478090-74478109 | MS.gene33997:intron | 25.0% |
| !! | ATGATTTTGTATTATGCCTT+TGG | - | chr1.4:74479325-74479344 | None:intergenic | 25.0% |
| !!! | GGAATTAATTTGTGTTTGTT+AGG | + | chr1.4:74479661-74479680 | MS.gene33997:intron | 25.0% |
| !!! | TATGGTTTTTTATTGTGTTC+AGG | + | chr1.4:74480170-74480189 | MS.gene33997:intron | 25.0% |
| !!! | TCAGTTTTTTATCTGCTATA+TGG | + | chr1.4:74477623-74477642 | MS.gene33997:intron | 25.0% |
| !!! | TTTTTCAAGGTGAATAAGTT+GGG | + | chr1.4:74478669-74478688 | MS.gene33997:intron | 25.0% |
| AGATACCGAGATAAATAACT+AGG | + | chr1.4:74478924-74478943 | MS.gene33997:intron | 30.0% | |
| ATTCCAATAAGTTAGGGTAT+AGG | - | chr1.4:74479646-74479665 | None:intergenic | 30.0% | |
| CAACTTATTCACCTTGAAAA+AGG | - | chr1.4:74478670-74478689 | None:intergenic | 30.0% | |
| CATAATTATATGCATGGGTT+GGG | - | chr1.4:74478711-74478730 | None:intergenic | 30.0% | |
| CATGTAACACTTTAGTGAAA+GGG | - | chr1.4:74480045-74480064 | None:intergenic | 30.0% | |
| GACATGCATAATTATATGCA+TGG | - | chr1.4:74478717-74478736 | None:intergenic | 30.0% | |
| GATGCAAAATATTGATCCAA+AGG | + | chr1.4:74479306-74479325 | MS.gene33997:intron | 30.0% | |
| GTGATATTAGAAAACTCAAG+TGG | - | chr1.4:74479714-74479733 | None:intergenic | 30.0% | |
| GTTGTTTAAATTCACAGAGA+TGG | + | chr1.4:74479427-74479446 | MS.gene33997:intron | 30.0% | |
| TCATTTGAATCAACAATGGA+TGG | - | chr1.4:74479807-74479826 | None:intergenic | 30.0% | |
| ! | ACATGTTCTTGTTATGCATA+TGG | - | chr1.4:74477699-74477718 | None:intergenic | 30.0% |
| ! | ATAATTATATGCATGGGTTG+GGG | - | chr1.4:74478710-74478729 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+TGG | + | chr1.4:74478668-74478687 | MS.gene33997:intron | 30.0% |
| AAATTTCTCAAGCTTAACCG+TGG | + | chr1.4:74479930-74479949 | MS.gene33997:CDS | 35.0% | |
| AACCTGAAACCTTGAAAACT+TGG | - | chr1.4:74479908-74479927 | None:intergenic | 35.0% | |
| AAGTGTAAAGCTTGAATCTG+TGG | + | chr1.4:74479359-74479378 | MS.gene33997:intron | 35.0% | |
| AATGCAAGTTACAGAAATCC+AGG | - | chr1.4:74477842-74477861 | None:intergenic | 35.0% | |
| AATTTCTCAAGCTTAACCGT+GGG | + | chr1.4:74479931-74479950 | MS.gene33997:CDS | 35.0% | |
| ACGGTTAAGCTTGAGAAATT+TGG | - | chr1.4:74479931-74479950 | None:intergenic | 35.0% | |
| AGAAGTGAAGAATGAAAACC+TGG | - | chr1.4:74477425-74477444 | None:intergenic | 35.0% | |
| AGGTGCAAAACAAAAATACC+AGG | - | chr1.4:74477895-74477914 | None:intergenic | 35.0% | |
| ATAAAAAACTGAGTGCTTCC+AGG | - | chr1.4:74477615-74477634 | None:intergenic | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | chr1.4:74479769-74479788 | None:intergenic | 35.0% | |
| ATGCAAGTTACAGAAATCCA+GGG | - | chr1.4:74477841-74477860 | None:intergenic | 35.0% | |
| CAACCTATACCCTAACTTAT+TGG | + | chr1.4:74479640-74479659 | MS.gene33997:intron | 35.0% | |
| CAATAAGTTAGGGTATAGGT+TGG | - | chr1.4:74479642-74479661 | None:intergenic | 35.0% | |
| GAAGTGAAGAATGAAAACCT+GGG | - | chr1.4:74477424-74477443 | None:intergenic | 35.0% | |
| GCATAATTATATGCATGGGT+TGG | - | chr1.4:74478712-74478731 | None:intergenic | 35.0% | |
| GCATGTAACACTTTAGTGAA+AGG | - | chr1.4:74480046-74480065 | None:intergenic | 35.0% | |
| TAACACTTTAGTGAAAGGGA+GGG | - | chr1.4:74480041-74480060 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+CGG | + | chr1.4:74479776-74479795 | MS.gene33997:CDS | 35.0% | |
| TCTTGTCGCATCATTTAATG+TGG | - | chr1.4:74478847-74478866 | None:intergenic | 35.0% | |
| ! | GGATTAATCGATTCTTGGAT+TGG | + | chr1.4:74479134-74479153 | MS.gene33997:intron | 35.0% |
| ! | TCTTGTTATGCATATGGCAT+TGG | - | chr1.4:74477693-74477712 | None:intergenic | 35.0% |
| ! | TTTTTATTGTGTTCAGGTGG+TGG | + | chr1.4:74480176-74480195 | MS.gene33997:intron | 35.0% |
| !! | AGAGCATTGCAAATGAATTC+AGG | - | chr1.4:74480070-74480089 | None:intergenic | 35.0% |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1.4:74478656-74478675 | MS.gene33997:intron | 35.0% |
| !!! | GGTTTTTTATTGTGTTCAGG+TGG | + | chr1.4:74480173-74480192 | MS.gene33997:intron | 35.0% |
| !!! | TGGTCTTTTTTAGGGTTTAG+TGG | + | chr1.4:74480129-74480148 | MS.gene33997:intron | 35.0% |
| !!! | TTTTTTGTCAAGTTGCCTAG+TGG | + | chr1.4:74478634-74478653 | MS.gene33997:intron | 35.0% |
| AAAGGTGAATTCTAGCCACT+AGG | - | chr1.4:74478652-74478671 | None:intergenic | 40.0% | |
| AATGTGTTTGATTGGTGCAG+TGG | - | chr1.4:74478212-74478231 | None:intergenic | 40.0% | |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr1.4:74477414-74477433 | None:intergenic | 40.0% | |
| CAAAGATGATTCAGGCAAGA+CGG | + | chr1.4:74479830-74479849 | MS.gene33997:CDS | 40.0% | |
| CCAAGAATCGATTAATCCGA+GGG | - | chr1.4:74479132-74479151 | None:intergenic | 40.0% | |
| GAAAACTTGGACATCCTCAA+TGG | - | chr1.4:74479895-74479914 | None:intergenic | 40.0% | |
| GAATTCATGTTATAGGGCTG+CGG | + | chr1.4:74478096-74478115 | MS.gene33997:intron | 40.0% | |
| GTAACACTTTAGTGAAAGGG+AGG | - | chr1.4:74480042-74480061 | None:intergenic | 40.0% | |
| GTCGTAATTTCTCGCTGTTT+CGG | + | chr1.4:74479476-74479495 | MS.gene33997:intron | 40.0% | |
| TCCAAGAATCGATTAATCCG+AGG | - | chr1.4:74479133-74479152 | None:intergenic | 40.0% | |
| TGGAGATCAGTGAGACTATT+TGG | - | chr1.4:74477481-74477500 | None:intergenic | 40.0% | |
| TTATCTACCTCCTACCATTG+AGG | + | chr1.4:74479878-74479897 | MS.gene33997:CDS | 40.0% | |
| TTCTTTGACCAAACCCATCT+CGG | + | chr1.4:74477740-74477759 | MS.gene33997:intron | 40.0% | |
| ! | AATGACAGCTTTATGGCGAT+AGG | - | chr1.4:74477563-74477582 | None:intergenic | 40.0% |
| ! | ATGACAGCTTTATGGCGATA+GGG | - | chr1.4:74477562-74477581 | None:intergenic | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1.4:74479771-74479790 | MS.gene33997:CDS | 40.0% |
| ! | TCACACAGCTCTGTATTGAT+TGG | + | chr1.4:74477929-74477948 | MS.gene33997:intron | 40.0% |
| ! | TGAGGATGTCCAAGTTTTCA+AGG | + | chr1.4:74479896-74479915 | MS.gene33997:CDS | 40.0% |
| !! | GTCCAAGTTTTCAAGGTTTC+AGG | + | chr1.4:74479903-74479922 | MS.gene33997:CDS | 40.0% |
| ACCAACTGAGCTATGCTCAT+GGG | + | chr1.4:74478740-74478759 | MS.gene33997:intron | 45.0% | |
| ACTTGGACATCCTCAATGGT+AGG | - | chr1.4:74479891-74479910 | None:intergenic | 45.0% | |
| ATGAGCATAGCTCAGTTGGT+AGG | - | chr1.4:74478740-74478759 | None:intergenic | 45.0% | |
| CCACTAAAATTGCCACCAAG+GGG | - | chr1.4:74479057-74479076 | None:intergenic | 45.0% | |
| CCCACTAAAATTGCCACCAA+GGG | - | chr1.4:74479058-74479077 | None:intergenic | 45.0% | |
| CTAAGTCCACACAGAGCAAT+GGG | + | chr1.4:74479078-74479097 | MS.gene33997:intron | 45.0% | |
| GTGTGAATTAGTCAGACAGC+AGG | - | chr1.4:74477915-74477934 | None:intergenic | 45.0% | |
| TAAGTCCACACAGAGCAATG+GGG | + | chr1.4:74479079-74479098 | MS.gene33997:intron | 45.0% | |
| TACCAACTGAGCTATGCTCA+TGG | + | chr1.4:74478739-74478758 | MS.gene33997:intron | 45.0% | |
| TCAGGTCATTGAGGCTTCAT+CGG | + | chr1.4:74477345-74477364 | MS.gene33997:CDS | 45.0% | |
| TCTTTGACCAAACCCATCTC+GGG | + | chr1.4:74477741-74477760 | MS.gene33997:intron | 45.0% | |
| ! | AGGTGAATAAGTTGGGTGTC+TGG | + | chr1.4:74478676-74478695 | MS.gene33997:intron | 45.0% |
| ! | ATTCTTTGTCAAGGTGCTCC+TGG | + | chr1.4:74477594-74477613 | MS.gene33997:intron | 45.0% |
| ! | CCCTCGGATTAATCGATTCT+TGG | + | chr1.4:74479129-74479148 | MS.gene33997:intron | 45.0% |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr1.4:74479763-74479782 | MS.gene33997:CDS | 45.0% |
| ! | GGTGAATAAGTTGGGTGTCT+GGG | + | chr1.4:74478677-74478696 | MS.gene33997:intron | 45.0% |
| ! | GTGAATAAGTTGGGTGTCTG+GGG | + | chr1.4:74478678-74478697 | MS.gene33997:intron | 45.0% |
| ! | TGAGCATAGCTCAGTTGGTA+GGG | - | chr1.4:74478739-74478758 | None:intergenic | 45.0% |
| ! | TTCATTGCTACTTGCACACC+TGG | + | chr1.4:74477874-74477893 | MS.gene33997:intron | 45.0% |
| !! | CAGCTCTGTATTGATTGGTG+CGG | + | chr1.4:74477934-74477953 | MS.gene33997:intron | 45.0% |
| !! | CCCTTGGTGGCAATTTTAGT+GGG | + | chr1.4:74479055-74479074 | MS.gene33997:intron | 45.0% |
| !! | TATTTATTTATTTAGTTATT+TGG | + | chr1.4:74478024-74478043 | MS.gene33997:intron | 5.0% |
| AAATTTGCACCCCCTGATCC+AGG | + | chr1.4:74478983-74479002 | MS.gene33997:intron | 50.0% | |
| AATTTGCACCCCCTGATCCA+GGG | + | chr1.4:74478984-74479003 | MS.gene33997:intron | 50.0% | |
| ACCTGGGAATTCCTTGGCTA+AGG | - | chr1.4:74477408-74477427 | None:intergenic | 50.0% | |
| ACCTTAGCCAAGGAATTCCC+AGG | + | chr1.4:74477404-74477423 | MS.gene33997:CDS | 50.0% | |
| AGAGTACGGTCAGGTCATTG+AGG | + | chr1.4:74477336-74477355 | MS.gene33997:CDS | 50.0% | |
| ATCGAACCTGAGACCTTGAG+AGG | - | chr1.4:74479028-74479047 | None:intergenic | 50.0% | |
| CAAGTGTGACTCAGTGCCTT+GGG | + | chr1.4:74479742-74479761 | MS.gene33997:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr1.4:74479761-74479780 | None:intergenic | 50.0% | |
| CCAACTGAGCTATGCTCATG+GGG | + | chr1.4:74478741-74478760 | MS.gene33997:intron | 50.0% | |
| GAAGGCAATTGAAGCAGCTC+CGG | + | chr1.4:74477303-74477322 | MS.gene33997:CDS | 50.0% | |
| GACCTGACCGTACTCTTTGA+AGG | - | chr1.4:74477332-74477351 | None:intergenic | 50.0% | |
| GCCCACTAAAATTGCCACCA+AGG | - | chr1.4:74479059-74479078 | None:intergenic | 50.0% | |
| GCTAAGTCCACACAGAGCAA+TGG | + | chr1.4:74479077-74479096 | MS.gene33997:intron | 50.0% | |
| GTCATTGAGGCTTCATCGGA+CGG | + | chr1.4:74477349-74477368 | MS.gene33997:CDS | 50.0% | |
| TCAAGCTTAACCGTGGGACA+TGG | + | chr1.4:74479937-74479956 | MS.gene33997:CDS | 50.0% | |
| TGGACATCCTCAATGGTAGG+AGG | - | chr1.4:74479888-74479907 | None:intergenic | 50.0% | |
| ! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr1.4:74477388-74477407 | None:intergenic | 50.0% |
| ! | AGGTTCGATTCGATTCCCCT+TGG | + | chr1.4:74479039-74479058 | MS.gene33997:intron | 50.0% |
| ! | ATCTGAAGCCAACCCGAGAT+GGG | - | chr1.4:74477756-74477775 | None:intergenic | 50.0% |
| ! | GACCTTCAAAGAGTACGGTC+AGG | + | chr1.4:74477327-74477346 | MS.gene33997:CDS | 50.0% |
| ! | TTCGATTCGATTCCCCTTGG+TGG | + | chr1.4:74479042-74479061 | MS.gene33997:intron | 50.0% |
| !! | CCCCTTGGTGGCAATTTTAG+TGG | + | chr1.4:74479054-74479073 | MS.gene33997:intron | 50.0% |
| !! | GGTATAGGTTGGTGACTTGC+AGG | - | chr1.4:74479631-74479650 | None:intergenic | 50.0% |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr1.4:74479750-74479769 | MS.gene33997:CDS | 55.0% | |
| AGACCTTGAGAGGACAGTGG+CGG | - | chr1.4:74479018-74479037 | None:intergenic | 55.0% | |
| ATCCAAGACCCTGGATCAGG+GGG | - | chr1.4:74478995-74479014 | None:intergenic | 55.0% | |
| CACTGTCCTCTCAAGGTCTC+AGG | + | chr1.4:74479019-74479038 | MS.gene33997:intron | 55.0% | |
| CCCCATGAGCATAGCTCAGT+TGG | - | chr1.4:74478744-74478763 | None:intergenic | 55.0% | |
| CCGGCGACCTTCAAAGAGTA+CGG | + | chr1.4:74477322-74477341 | MS.gene33997:CDS | 55.0% | |
| CTGAGACCTTGAGAGGACAG+TGG | - | chr1.4:74479021-74479040 | None:intergenic | 55.0% | |
| GATCCAAGACCCTGGATCAG+GGG | - | chr1.4:74478996-74479015 | None:intergenic | 55.0% | |
| GCAAGTGTGACTCAGTGCCT+TGG | + | chr1.4:74479741-74479760 | MS.gene33997:CDS | 55.0% | |
| GCTCAGCTTGACCTTAGCCA+AGG | + | chr1.4:74477394-74477413 | MS.gene33997:CDS | 55.0% | |
| GGATCCAAGACCCTGGATCA+GGG | - | chr1.4:74478997-74479016 | None:intergenic | 55.0% | |
| TCATCGGACGGTGAGGGATT+TGG | + | chr1.4:74477361-74477380 | MS.gene33997:CDS | 55.0% | |
| TGACCAAACCCATCTCGGGT+TGG | + | chr1.4:74477745-74477764 | MS.gene33997:intron | 55.0% | |
| TGGAGTGTGCTCCTCTCACA+GGG | + | chr1.4:74477778-74477797 | MS.gene33997:intron | 55.0% | |
| TTGGAGTGTGCTCCTCTCAC+AGG | + | chr1.4:74477777-74477796 | MS.gene33997:intron | 55.0% | |
| ! | AAGCCAACCCGAGATGGGTT+TGG | - | chr1.4:74477751-74477770 | None:intergenic | 55.0% |
| ! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr1.4:74477325-74477344 | None:intergenic | 55.0% |
| ! | GATCTGAAGCCAACCCGAGA+TGG | - | chr1.4:74477757-74477776 | None:intergenic | 55.0% |
| !! | CTCGGGTTGGCTTCAGATCT+TGG | + | chr1.4:74477758-74477777 | MS.gene33997:intron | 55.0% |
| !! | GCGGAGCTAGGTAGCTTTGA+GGG | + | chr1.4:74477801-74477820 | MS.gene33997:intron | 55.0% |
| AACCGTGGGACATGGCATGC+TGG | + | chr1.4:74479945-74479964 | MS.gene33997:CDS | 60.0% | |
| AATTCCACCGCCCACTTGCG+GGG | - | chr1.4:74479105-74479124 | None:intergenic | 60.0% | |
| ACGGTCGTGAAGTCGCACAG+TGG | + | chr1.4:74479849-74479868 | MS.gene33997:CDS | 60.0% | |
| CAATTCCACCGCCCACTTGC+GGG | - | chr1.4:74479106-74479125 | None:intergenic | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr1.4:74479753-74479772 | MS.gene33997:CDS | 60.0% | |
| CCAATTCCACCGCCCACTTG+CGG | - | chr1.4:74479107-74479126 | None:intergenic | 60.0% | |
| CGGATCCAAGACCCTGGATC+AGG | - | chr1.4:74478998-74479017 | None:intergenic | 60.0% | |
| GACCAGCATGCCATGTCCCA+CGG | - | chr1.4:74479950-74479969 | None:intergenic | 60.0% | |
| GAGGCTTCATCGGACGGTGA+GGG | + | chr1.4:74477355-74477374 | MS.gene33997:CDS | 60.0% | |
| GATCCGCCACTGTCCTCTCA+AGG | + | chr1.4:74479012-74479031 | MS.gene33997:intron | 60.0% | |
| GGAGTGTGCTCCTCTCACAG+GGG | + | chr1.4:74477779-74477798 | MS.gene33997:intron | 60.0% | |
| TGAGGCTTCATCGGACGGTG+AGG | + | chr1.4:74477354-74477373 | MS.gene33997:CDS | 60.0% | |
| ! | GGCGGAGCTAGGTAGCTTTG+AGG | + | chr1.4:74477800-74477819 | MS.gene33997:intron | 60.0% |
| ! | GGCGGTGGAATTGGTTCCCT+CGG | + | chr1.4:74479113-74479132 | MS.gene33997:intron | 60.0% |
| AGCAATGGGGCCCCGCAAGT+GGG | + | chr1.4:74479092-74479111 | MS.gene33997:intron | 65.0% | |
| CACCCCCTGATCCAGGGTCT+TGG | + | chr1.4:74478990-74479009 | MS.gene33997:intron | 65.0% | |
| CCGCAAGTGGGCGGTGGAAT+TGG | + | chr1.4:74479104-74479123 | MS.gene33997:intron | 65.0% | |
| GTGTGCTCCTCTCACAGGGG+CGG | + | chr1.4:74477782-74477801 | MS.gene33997:intron | 65.0% | |
| !! | CAGTGGCGGATCCAAGACCC+TGG | - | chr1.4:74479004-74479023 | None:intergenic | 65.0% |
| AATGGGGCCCCGCAAGTGGG+CGG | + | chr1.4:74479095-74479114 | MS.gene33997:intron | 70.0% | |
| CCTAGCTCCGCCCCTGTGAG+AGG | - | chr1.4:74477792-74477811 | None:intergenic | 70.0% | |
| CCTCTCACAGGGGCGGAGCT+AGG | + | chr1.4:74477789-74477808 | MS.gene33997:intron | 70.0% | |
| CGGGGCCCCATTGCTCTGTG+TGG | - | chr1.4:74479087-74479106 | None:intergenic | 70.0% | |
| GAGCAATGGGGCCCCGCAAG+TGG | + | chr1.4:74479091-74479110 | MS.gene33997:intron | 70.0% | |
| GGGTGTGCACGTGCACACCC+TGG | + | chr1.4:74477821-74477840 | MS.gene33997:intron | 70.0% | |
| ! | GGGGCCCCGCAAGTGGGCGG+TGG | + | chr1.4:74479098-74479117 | MS.gene33997:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 74477286 | 74480218 | 74477286 | ID=MS.gene33997 |
| chr1.4 | mRNA | 74477286 | 74480218 | 74477286 | ID=MS.gene33997.t1;Parent=MS.gene33997 |
| chr1.4 | exon | 74477286 | 74477425 | 74477286 | ID=MS.gene33997.t1.exon1;Parent=MS.gene33997.t1 |
| chr1.4 | CDS | 74477286 | 74477425 | 74477286 | ID=cds.MS.gene33997.t1;Parent=MS.gene33997.t1 |
| chr1.4 | exon | 74479683 | 74480025 | 74479683 | ID=MS.gene33997.t1.exon2;Parent=MS.gene33997.t1 |
| chr1.4 | CDS | 74479683 | 74480025 | 74479683 | ID=cds.MS.gene33997.t1;Parent=MS.gene33997.t1 |
| chr1.4 | exon | 74480192 | 74480218 | 74480192 | ID=MS.gene33997.t1.exon3;Parent=MS.gene33997.t1 |
| chr1.4 | CDS | 74480192 | 74480218 | 74480192 | ID=cds.MS.gene33997.t1;Parent=MS.gene33997.t1 |
| Gene Sequence |
| Protein sequence |
