Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041741.t1 | XP_003591980.1 | 94.4 | 180 | 9 | 1 | 4 | 182 | 7 | 186 | 6.10E-93 | 350.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041741.t1 | G7I9N4 | 94.4 | 180 | 9 | 1 | 4 | 182 | 7 | 186 | 4.4e-93 | 350.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041741 | MS.gene041739 | PPI |
| MS.gene041741 | MS.gene038651 | PPI |
| MS.gene041740 | MS.gene041741 | PPI |
| MS.gene059328 | MS.gene041741 | PPI |
| MS.gene041741 | MS.gene006015 | PPI |
| MS.gene33992 | MS.gene041741 | PPI |
| MS.gene041741 | MS.gene043625 | PPI |
| MS.gene006014 | MS.gene041741 | PPI |
| MS.gene041741 | MS.gene33994 | PPI |
| MS.gene041741 | MS.gene006013 | PPI |
| MS.gene33997 | MS.gene041741 | PPI |
| MS.gene54750 | MS.gene041741 | PPI |
| MS.gene33993 | MS.gene041741 | PPI |
| MS.gene059329 | MS.gene041741 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041741.t1 | MTR_1g095890 | 93.011 | 186 | 9 | 2 | 1 | 182 | 1 | 186 | 1.72e-125 | 351 |
| MS.gene041741.t1 | MTR_1g095900 | 78.919 | 185 | 36 | 1 | 1 | 182 | 1 | 185 | 1.29e-105 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041741.t1 | AT2G35810 | 66.854 | 178 | 52 | 3 | 4 | 178 | 22 | 195 | 6.06e-86 | 251 |
| MS.gene041741.t1 | AT2G35810 | 66.854 | 178 | 52 | 3 | 4 | 178 | 22 | 195 | 6.06e-86 | 251 |
| MS.gene041741.t1 | AT2G35820 | 64.804 | 179 | 57 | 2 | 4 | 180 | 8 | 182 | 1.43e-84 | 248 |
| MS.gene041741.t1 | AT2G35820 | 64.804 | 179 | 57 | 2 | 4 | 180 | 98 | 272 | 4.50e-83 | 247 |
| MS.gene041741.t1 | AT2G35830 | 66.477 | 176 | 57 | 2 | 4 | 178 | 8 | 182 | 7.58e-83 | 243 |
| MS.gene041741.t1 | AT2G35830 | 65.341 | 176 | 54 | 3 | 4 | 178 | 8 | 177 | 3.26e-78 | 231 |
Find 51 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGTTAAGCTTGAGAAATT+TGG | 0.260726 | 1.1:-69082929 | None:intergenic |
| GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1.1:+69082772 | MS.gene041741:CDS |
| TCATCGGACGGTGAGGGGTT+TGG | 0.318746 | 1.1:+69081603 | MS.gene041741:CDS |
| AATGAAATCAAAGATGATTC+AGG | 0.369755 | 1.1:+69082823 | MS.gene041741:CDS |
| AACCTGAAACCTTGAAAACT+TGG | 0.407022 | 1.1:-69082906 | None:intergenic |
| GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 1.1:+69082764 | MS.gene041741:CDS |
| GACCTGACCGTACTCTTTGA+AGG | 0.444255 | 1.1:-69081571 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 1.1:+69082751 | MS.gene041741:CDS |
| AGGTCAAGCTGAGCATCGTT+TGG | 0.468746 | 1.1:-69081627 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 1.1:+69082754 | MS.gene041741:CDS |
| CAAGTGTGACTCAGTGCCTT+GGG | 0.479051 | 1.1:+69082743 | MS.gene041741:CDS |
| GCAAGTGTGACTCAGTGCCT+TGG | 0.493326 | 1.1:+69082742 | MS.gene041741:CDS |
| TCATTTGAATCAACAATGGA+TGG | 0.494781 | 1.1:-69082805 | None:intergenic |
| TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 1.1:+69082972 | MS.gene041741:CDS |
| ACCTTAGCCAAGGAATTCCC+AGG | 0.496730 | 1.1:+69081646 | MS.gene041741:CDS |
| GAGGCTTCATCGGACGGTGA+GGG | 0.503853 | 1.1:+69081597 | MS.gene041741:CDS |
| ACCTGGGAATTCCTTGGCTA+AGG | 0.513339 | 1.1:-69081647 | None:intergenic |
| AATGGAGAGTGTGAAGGTGA+AGG | 0.517827 | 1.1:+69081527 | None:intergenic |
| ATGAAAACCTGGGAATTCCT+TGG | 0.524061 | 1.1:-69081653 | None:intergenic |
| TTATCTACCTCCTACCATTG+AGG | 0.529148 | 1.1:+69082879 | MS.gene041741:CDS |
| GTCATTGAGGCTTCATCGGA+CGG | 0.541534 | 1.1:+69081591 | MS.gene041741:CDS |
| AACCGTGGGACATGGCATGC+TGG | 0.544561 | 1.1:+69082946 | MS.gene041741:CDS |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | 1.1:-69082767 | None:intergenic |
| AGGCTTCATCGGACGGTGAG+GGG | 0.550679 | 1.1:+69081598 | MS.gene041741:CDS |
| GAAAACTTGGACATCCTCAA+TGG | 0.552522 | 1.1:-69082893 | None:intergenic |
| TCAGGTCATTGAGGCTTCAT+CGG | 0.558495 | 1.1:+69081587 | MS.gene041741:CDS |
| TCAAGCTTAACCGTGGGACA+TGG | 0.558912 | 1.1:+69082938 | MS.gene041741:CDS |
| GATTTCATTTGAATCAACAA+TGG | 0.567401 | 1.1:-69082809 | None:intergenic |
| GACCTTCAAAGAGTACGGTC+AGG | 0.570961 | 1.1:+69081569 | MS.gene041741:CDS |
| TGAGGCTTCATCGGACGGTG+AGG | 0.573414 | 1.1:+69081596 | MS.gene041741:CDS |
| GTCCTTCTTAAAGTTGTGTG+TGG | 0.574527 | 1.1:-69083206 | None:intergenic |
| TACCACACACAACTTTAAGA+AGG | 0.575142 | 1.1:+69083204 | MS.gene041741:CDS |
| CCGTACTCTTTGAAGGTCGC+CGG | 0.579027 | 1.1:-69081564 | None:intergenic |
| GAAGGCAATTGAAGCAACTC+CGG | 0.594897 | 1.1:+69081545 | MS.gene041741:CDS |
| CACAACTTTAAGAAGGACAA+TGG | 0.594981 | 1.1:+69083211 | MS.gene041741:CDS |
| GAAGGGAATGGAGAGTGTGA+AGG | 0.597978 | 1.1:+69081521 | None:intergenic |
| CAAAGATGATTCAGGCAAGA+CGG | 0.600075 | 1.1:+69082831 | MS.gene041741:CDS |
| TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1.1:+69082777 | MS.gene041741:CDS |
| GACCAGCATGCCATGTCCCA+CGG | 0.605299 | 1.1:-69082948 | None:intergenic |
| CCGGCGACCTTCAAAGAGTA+CGG | 0.605471 | 1.1:+69081564 | MS.gene041741:CDS |
| GTGATATTAGAAAACTCAAG+TGG | 0.611037 | 1.1:-69082712 | None:intergenic |
| CTTTAAGAAGGACAATGGAG+TGG | 0.614786 | 1.1:+69083216 | MS.gene041741:CDS |
| AAATTTCTCAAGCTTAACCG+TGG | 0.618191 | 1.1:+69082931 | MS.gene041741:CDS |
| ACTTGGACATCCTCAATGGT+AGG | 0.620998 | 1.1:-69082889 | None:intergenic |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | 1.1:-69082759 | None:intergenic |
| ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 1.1:-69082970 | None:intergenic |
| GCTCAGCTTGACCTTAGCCA+AGG | 0.638940 | 1.1:+69081636 | MS.gene041741:CDS |
| AATTTCTCAAGCTTAACCGT+GGG | 0.640376 | 1.1:+69082932 | MS.gene041741:CDS |
| TGGACATCCTCAATGGTAGG+AGG | 0.650915 | 1.1:-69082886 | None:intergenic |
| AGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 1.1:+69081578 | MS.gene041741:CDS |
| ACGGTCGTGAAGTCGCACAG+TGG | 0.761158 | 1.1:+69082850 | MS.gene041741:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAAATTCAAAATGAA+TGG | - | chr1.1:69081743-69081762 | None:intergenic | 10.0% |
| !!! | AAAGTTATTTTGATTAAAAA+AGG | - | chr1.1:69081905-69081924 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTGATTAAAAAA+GGG | - | chr1.1:69081904-69081923 | None:intergenic | 10.0% |
| !! | AAATTAATTCCAATAAGTTA+GGG | - | chr1.1:69082653-69082672 | None:intergenic | 15.0% |
| !!! | TATTTGAAAAGAAATTTTGT+TGG | - | chr1.1:69081768-69081787 | None:intergenic | 15.0% |
| !!! | TATTTTTTTGGTCTTTTTTA+GGG | + | chr1.1:69083122-69083141 | MS.gene041741:intron | 15.0% |
| !!! | TTATTTTTTTGGTCTTTTTT+AGG | + | chr1.1:69083121-69083140 | MS.gene041741:intron | 15.0% |
| !! | ATATTAATTGCAATCAACTT+TGG | + | chr1.1:69082410-69082429 | MS.gene041741:intron | 20.0% |
| !! | ATTGCAATTAATATTGATAG+TGG | - | chr1.1:69082404-69082423 | None:intergenic | 20.0% |
| !! | CAAATTAATTCCAATAAGTT+AGG | - | chr1.1:69082654-69082673 | None:intergenic | 20.0% |
| !! | TAAATTAAATGACAGCTTTA+TGG | - | chr1.1:69081812-69081831 | None:intergenic | 20.0% |
| !! | TAACTTAAGATATTTCGTAA+AGG | + | chr1.1:69082223-69082242 | MS.gene041741:intron | 20.0% |
| !!! | CAAAATTTTCATTTGAATTG+AGG | - | chr1.1:69081698-69081717 | None:intergenic | 20.0% |
| !!! | CTCAATTCAAATGAAAATTT+TGG | + | chr1.1:69081696-69081715 | MS.gene041741:intron | 20.0% |
| !!! | TTGTGCTTATCTTATTTTTT+TGG | + | chr1.1:69083110-69083129 | MS.gene041741:intron | 20.0% |
| !!! | TTTATTGTTTTATCTGATCT+TGG | + | chr1.1:69082456-69082475 | MS.gene041741:intron | 20.0% |
| ! | AATGAAATCAAAGATGATTC+AGG | + | chr1.1:69082823-69082842 | MS.gene041741:CDS | 25.0% |
| ! | ATGCTCTTTACAATAATACA+TGG | + | chr1.1:69083084-69083103 | MS.gene041741:intron | 25.0% |
| ! | ATGTTGTTGTGATTTATGTA+TGG | + | chr1.1:69083153-69083172 | MS.gene041741:intron | 25.0% |
| ! | ATTACATTAAACACTGTCAT+TGG | - | chr1.1:69082194-69082213 | None:intergenic | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr1.1:69082973-69082992 | None:intergenic | 25.0% |
| ! | ATTTAAGTGATTCTTTGTCA+AGG | + | chr1.1:69081827-69081846 | MS.gene041741:intron | 25.0% |
| ! | CATAATGTCAATCTAAATTG+AGG | - | chr1.1:69082602-69082621 | None:intergenic | 25.0% |
| ! | CGAAATATCTTAAGTTATGT+TGG | - | chr1.1:69082220-69082239 | None:intergenic | 25.0% |
| ! | GATTTCATTTGAATCAACAA+TGG | - | chr1.1:69082812-69082831 | None:intergenic | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr1.1:69082972-69082991 | MS.gene041741:CDS | 25.0% |
| ! | TGCTCTTTACAATAATACAT+GGG | + | chr1.1:69083085-69083104 | MS.gene041741:intron | 25.0% |
| !! | ATGATTTTGTATTATGCCTT+TGG | - | chr1.1:69082330-69082349 | None:intergenic | 25.0% |
| !!! | GGAATTAATTTGTGTTTGTT+AGG | + | chr1.1:69082662-69082681 | MS.gene041741:intron | 25.0% |
| !!! | TATGGTTTTTTATTGTGTTC+AGG | + | chr1.1:69083171-69083190 | MS.gene041741:intron | 25.0% |
| !!! | TCAGTTTTTTATCTGCTATT+TGG | + | chr1.1:69081865-69081884 | MS.gene041741:intron | 25.0% |
| ATTCCAATAAGTTAGGGTAT+AGG | - | chr1.1:69082647-69082666 | None:intergenic | 30.0% | |
| CATGTAACACTTTAGTGAAA+GGG | - | chr1.1:69083046-69083065 | None:intergenic | 30.0% | |
| GATGCAAAATATTGATCCAA+AGG | + | chr1.1:69082311-69082330 | MS.gene041741:intron | 30.0% | |
| GTGATATTAGAAAACTCAAG+TGG | - | chr1.1:69082715-69082734 | None:intergenic | 30.0% | |
| GTTGTTTAAATTCACAGAGA+TGG | + | chr1.1:69082432-69082451 | MS.gene041741:intron | 30.0% | |
| TACATCAGCTTAATTTAGCT+GGG | + | chr1.1:69082562-69082581 | MS.gene041741:intron | 30.0% | |
| TCATTTGAATCAACAATGGA+TGG | - | chr1.1:69082808-69082827 | None:intergenic | 30.0% | |
| TTACATCAGCTTAATTTAGC+TGG | + | chr1.1:69082561-69082580 | MS.gene041741:intron | 30.0% | |
| ! | ACATGTTCTTGTTATGCATA+TGG | - | chr1.1:69081941-69081960 | None:intergenic | 30.0% |
| AAATTTCTCAAGCTTAACCG+TGG | + | chr1.1:69082931-69082950 | MS.gene041741:CDS | 35.0% | |
| AACCTGAAACCTTGAAAACT+TGG | - | chr1.1:69082909-69082928 | None:intergenic | 35.0% | |
| AAGTGTAAAGCTTGAATCTG+TGG | + | chr1.1:69082364-69082383 | MS.gene041741:intron | 35.0% | |
| AATTTCTCAAGCTTAACCGT+GGG | + | chr1.1:69082932-69082951 | MS.gene041741:CDS | 35.0% | |
| ACGGTTAAGCTTGAGAAATT+TGG | - | chr1.1:69082932-69082951 | None:intergenic | 35.0% | |
| AGAAGTGAAGAATGAAAACC+TGG | - | chr1.1:69081667-69081686 | None:intergenic | 35.0% | |
| ATAAAAAACTGAGTGCTTCC+AGG | - | chr1.1:69081857-69081876 | None:intergenic | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | chr1.1:69082770-69082789 | None:intergenic | 35.0% | |
| CAACCTATACCCTAACTTAT+TGG | + | chr1.1:69082641-69082660 | MS.gene041741:intron | 35.0% | |
| CAATAAGTTAGGGTATAGGT+TGG | - | chr1.1:69082643-69082662 | None:intergenic | 35.0% | |
| GAAGTGAAGAATGAAAACCT+GGG | - | chr1.1:69081666-69081685 | None:intergenic | 35.0% | |
| GCATGTAACACTTTAGTGAA+AGG | - | chr1.1:69083047-69083066 | None:intergenic | 35.0% | |
| TAACACTTTAGTGAAAGGGA+GGG | - | chr1.1:69083042-69083061 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | chr1.1:69082777-69082796 | MS.gene041741:CDS | 35.0% | |
| ! | CACAACTTTAAGAAGGACAA+TGG | + | chr1.1:69083211-69083230 | MS.gene041741:CDS | 35.0% |
| ! | GGATTAATCGATTCTTGGAT+TGG | + | chr1.1:69082140-69082159 | MS.gene041741:intron | 35.0% |
| ! | GTCATAATTTCTCGCTGTTT+TGG | + | chr1.1:69082481-69082500 | MS.gene041741:intron | 35.0% |
| ! | TACCACACACAACTTTAAGA+AGG | + | chr1.1:69083204-69083223 | MS.gene041741:CDS | 35.0% |
| ! | TCTTGTTATGCATATGGCAT+TGG | - | chr1.1:69081935-69081954 | None:intergenic | 35.0% |
| ! | TTTTTATTGTGTTCAGGTGG+TGG | + | chr1.1:69083177-69083196 | MS.gene041741:intron | 35.0% |
| !! | AGAGCATTGCAAATGAATTC+AGG | - | chr1.1:69083071-69083090 | None:intergenic | 35.0% |
| !!! | GGTTTTTTATTGTGTTCAGG+TGG | + | chr1.1:69083174-69083193 | MS.gene041741:intron | 35.0% |
| !!! | TGGTCTTTTTTAGGGTTTAG+TGG | + | chr1.1:69083130-69083149 | MS.gene041741:intron | 35.0% |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr1.1:69081656-69081675 | None:intergenic | 40.0% | |
| CAAAGATGATTCAGGCAAGA+CGG | + | chr1.1:69082831-69082850 | MS.gene041741:CDS | 40.0% | |
| GAAAACTTGGACATCCTCAA+TGG | - | chr1.1:69082896-69082915 | None:intergenic | 40.0% | |
| GTAACACTTTAGTGAAAGGG+AGG | - | chr1.1:69083043-69083062 | None:intergenic | 40.0% | |
| GTCCTTCTTAAAGTTGTGTG+TGG | - | chr1.1:69083209-69083228 | None:intergenic | 40.0% | |
| TGGAGATCAGTGAGACTATT+TGG | - | chr1.1:69081723-69081742 | None:intergenic | 40.0% | |
| TTATCTACCTCCTACCATTG+AGG | + | chr1.1:69082879-69082898 | MS.gene041741:CDS | 40.0% | |
| TTCTTTGACCAAACCCATCT+CGG | + | chr1.1:69081982-69082001 | MS.gene041741:intron | 40.0% | |
| ! | AATGACAGCTTTATGGCGAT+AGG | - | chr1.1:69081805-69081824 | None:intergenic | 40.0% |
| ! | ATGACAGCTTTATGGCGATA+GGG | - | chr1.1:69081804-69081823 | None:intergenic | 40.0% |
| ! | CTCTCGGATTAATCGATTCT+TGG | + | chr1.1:69082135-69082154 | MS.gene041741:intron | 40.0% |
| ! | CTTTAAGAAGGACAATGGAG+TGG | + | chr1.1:69083216-69083235 | MS.gene041741:CDS | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1.1:69082772-69082791 | MS.gene041741:CDS | 40.0% |
| ! | TGAGGATGTCCAAGTTTTCA+AGG | + | chr1.1:69082897-69082916 | MS.gene041741:CDS | 40.0% |
| !! | GTCCAAGTTTTCAAGGTTTC+AGG | + | chr1.1:69082904-69082923 | MS.gene041741:CDS | 40.0% |
| ACTTGGACATCCTCAATGGT+AGG | - | chr1.1:69082892-69082911 | None:intergenic | 45.0% | |
| ATCGAACTTGAGACCTTGAG+AGG | - | chr1.1:69082034-69082053 | None:intergenic | 45.0% | |
| CTAAGTCCACACAGAGCAAT+GGG | + | chr1.1:69082084-69082103 | MS.gene041741:intron | 45.0% | |
| GAAGGCAATTGAAGCAACTC+CGG | + | chr1.1:69081545-69081564 | MS.gene041741:CDS | 45.0% | |
| TAAGTCCACACAGAGCAATG+GGG | + | chr1.1:69082085-69082104 | MS.gene041741:intron | 45.0% | |
| TCAGGTCATTGAGGCTTCAT+CGG | + | chr1.1:69081587-69081606 | MS.gene041741:CDS | 45.0% | |
| TCTTTGACCAAACCCATCTC+GGG | + | chr1.1:69081983-69082002 | MS.gene041741:intron | 45.0% | |
| ! | AAGTTCGATTCGATTCCCCT+TGG | + | chr1.1:69082045-69082064 | MS.gene041741:intron | 45.0% |
| ! | ATTCTTTGTCAAGGTGCTCC+TGG | + | chr1.1:69081836-69081855 | MS.gene041741:intron | 45.0% |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr1.1:69082764-69082783 | MS.gene041741:CDS | 45.0% |
| !! | ATTCCCCTTGGTGGCAATTT+TGG | + | chr1.1:69082057-69082076 | MS.gene041741:intron | 45.0% |
| ACCTGGGAATTCCTTGGCTA+AGG | - | chr1.1:69081650-69081669 | None:intergenic | 50.0% | |
| ACCTTAGCCAAGGAATTCCC+AGG | + | chr1.1:69081646-69081665 | MS.gene041741:CDS | 50.0% | |
| AGAGTACGGTCAGGTCATTG+AGG | + | chr1.1:69081578-69081597 | MS.gene041741:CDS | 50.0% | |
| CAAGTGTGACTCAGTGCCTT+GGG | + | chr1.1:69082743-69082762 | MS.gene041741:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr1.1:69082762-69082781 | None:intergenic | 50.0% | |
| CCACCAAAATTGCCACCAAG+GGG | - | chr1.1:69082063-69082082 | None:intergenic | 50.0% | |
| CCCACCAAAATTGCCACCAA+GGG | - | chr1.1:69082064-69082083 | None:intergenic | 50.0% | |
| GACCTGACCGTACTCTTTGA+AGG | - | chr1.1:69081574-69081593 | None:intergenic | 50.0% | |
| GCTAAGTCCACACAGAGCAA+TGG | + | chr1.1:69082083-69082102 | MS.gene041741:intron | 50.0% | |
| GTCATTGAGGCTTCATCGGA+CGG | + | chr1.1:69081591-69081610 | MS.gene041741:CDS | 50.0% | |
| TCAAGCTTAACCGTGGGACA+TGG | + | chr1.1:69082938-69082957 | MS.gene041741:CDS | 50.0% | |
| TCCGAGAGAACCAATTCCAC+CGG | - | chr1.1:69082123-69082142 | None:intergenic | 50.0% | |
| TGGACATCCTCAATGGTAGG+AGG | - | chr1.1:69082889-69082908 | None:intergenic | 50.0% | |
| ! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr1.1:69081630-69081649 | None:intergenic | 50.0% |
| ! | ATCTGAAGCCAACCCGAGAT+GGG | - | chr1.1:69081998-69082017 | None:intergenic | 50.0% |
| ! | GACCTTCAAAGAGTACGGTC+AGG | + | chr1.1:69081569-69081588 | MS.gene041741:CDS | 50.0% |
| ! | TTCGATTCGATTCCCCTTGG+TGG | + | chr1.1:69082048-69082067 | MS.gene041741:intron | 50.0% |
| !! | CCCTTGGTGGCAATTTTGGT+GGG | + | chr1.1:69082061-69082080 | MS.gene041741:intron | 50.0% |
| !! | GGTATAGGTTGGTGACTAGC+AGG | - | chr1.1:69082632-69082651 | None:intergenic | 50.0% |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr1.1:69082751-69082770 | MS.gene041741:CDS | 55.0% | |
| CCGGCGACCTTCAAAGAGTA+CGG | + | chr1.1:69081564-69081583 | MS.gene041741:CDS | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | + | chr1.1:69082018-69082037 | MS.gene041741:intron | 55.0% | |
| GCAAGTGTGACTCAGTGCCT+TGG | + | chr1.1:69082742-69082761 | MS.gene041741:CDS | 55.0% | |
| GCCCACCAAAATTGCCACCA+AGG | - | chr1.1:69082065-69082084 | None:intergenic | 55.0% | |
| GCTCAGCTTGACCTTAGCCA+AGG | + | chr1.1:69081636-69081655 | MS.gene041741:CDS | 55.0% | |
| TGACCAAACCCATCTCGGGT+TGG | + | chr1.1:69081987-69082006 | MS.gene041741:intron | 55.0% | |
| ! | AAGCCAACCCGAGATGGGTT+TGG | - | chr1.1:69081993-69082012 | None:intergenic | 55.0% |
| ! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr1.1:69081567-69081586 | None:intergenic | 55.0% |
| ! | GATCTGAAGCCAACCCGAGA+TGG | - | chr1.1:69081999-69082018 | None:intergenic | 55.0% |
| ! | GCCGGTGGAATTGGTTCTCT+CGG | + | chr1.1:69082119-69082138 | MS.gene041741:intron | 55.0% |
| !! | CCCCTTGGTGGCAATTTTGG+TGG | + | chr1.1:69082060-69082079 | MS.gene041741:intron | 55.0% |
| !! | CTCGGGTTGGCTTCAGATCT+TGG | + | chr1.1:69082000-69082019 | MS.gene041741:intron | 55.0% |
| AACCGTGGGACATGGCATGC+TGG | + | chr1.1:69082946-69082965 | MS.gene041741:CDS | 60.0% | |
| AATTCCACCGGCCACTTGCG+GGG | - | chr1.1:69082111-69082130 | None:intergenic | 60.0% | |
| ACGGTCGTGAAGTCGCACAG+TGG | + | chr1.1:69082850-69082869 | MS.gene041741:CDS | 60.0% | |
| AGGCTTCATCGGACGGTGAG+GGG | + | chr1.1:69081598-69081617 | MS.gene041741:CDS | 60.0% | |
| CAATTCCACCGGCCACTTGC+GGG | - | chr1.1:69082112-69082131 | None:intergenic | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr1.1:69082754-69082773 | MS.gene041741:CDS | 60.0% | |
| CCAATTCCACCGGCCACTTG+CGG | - | chr1.1:69082113-69082132 | None:intergenic | 60.0% | |
| GACCAGCATGCCATGTCCCA+CGG | - | chr1.1:69082951-69082970 | None:intergenic | 60.0% | |
| GAGGCTTCATCGGACGGTGA+GGG | + | chr1.1:69081597-69081616 | MS.gene041741:CDS | 60.0% | |
| TCATCGGACGGTGAGGGGTT+TGG | + | chr1.1:69081603-69081622 | MS.gene041741:CDS | 60.0% | |
| TGAGGCTTCATCGGACGGTG+AGG | + | chr1.1:69081596-69081615 | MS.gene041741:CDS | 60.0% | |
| CCGCAAGTGGCCGGTGGAAT+TGG | + | chr1.1:69082110-69082129 | MS.gene041741:intron | 65.0% | |
| AATGGGGCCCCGCAAGTGGC+CGG | + | chr1.1:69082101-69082120 | MS.gene041741:intron | 70.0% | |
| CGGGGCCCCATTGCTCTGTG+TGG | - | chr1.1:69082093-69082112 | None:intergenic | 70.0% | |
| GAGCAATGGGGCCCCGCAAG+TGG | + | chr1.1:69082097-69082116 | MS.gene041741:intron | 70.0% | |
| ! | GGGGCCCCGCAAGTGGCCGG+TGG | + | chr1.1:69082104-69082123 | MS.gene041741:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 69081528 | 69083258 | 69081528 | ID=MS.gene041741 |
| chr1.1 | mRNA | 69081528 | 69083258 | 69081528 | ID=MS.gene041741.t1;Parent=MS.gene041741 |
| chr1.1 | exon | 69081528 | 69081667 | 69081528 | ID=MS.gene041741.t1.exon1;Parent=MS.gene041741.t1 |
| chr1.1 | CDS | 69081528 | 69081667 | 69081528 | ID=cds.MS.gene041741.t1;Parent=MS.gene041741.t1 |
| chr1.1 | exon | 69082684 | 69083026 | 69082684 | ID=MS.gene041741.t1.exon2;Parent=MS.gene041741.t1 |
| chr1.1 | CDS | 69082684 | 69083026 | 69082684 | ID=cds.MS.gene041741.t1;Parent=MS.gene041741.t1 |
| chr1.1 | exon | 69083193 | 69083258 | 69083193 | ID=MS.gene041741.t1.exon3;Parent=MS.gene041741.t1 |
| chr1.1 | CDS | 69083193 | 69083258 | 69083193 | ID=cds.MS.gene041741.t1;Parent=MS.gene041741.t1 |
| Gene Sequence |
| Protein sequence |
