Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059329.t1 | XP_003591980.1 | 89.2 | 186 | 19 | 1 | 1 | 185 | 1 | 186 | 5.40E-89 | 337 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059329.t1 | G7I9N4 | 89.2 | 186 | 19 | 1 | 1 | 185 | 1 | 186 | 3.9e-89 | 337.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059329 | MS.gene33992 | PPI |
| MS.gene059329 | MS.gene043625 | PPI |
| MS.gene33997 | MS.gene059329 | PPI |
| MS.gene059329 | MS.gene33993 | PPI |
| MS.gene006014 | MS.gene059329 | PPI |
| MS.gene059329 | MS.gene33994 | PPI |
| MS.gene059329 | MS.gene006013 | PPI |
| MS.gene041740 | MS.gene059329 | PPI |
| MS.gene059328 | MS.gene059329 | PPI |
| MS.gene059329 | MS.gene059328 | PPI |
| MS.gene059329 | MS.gene041739 | PPI |
| MS.gene059329 | MS.gene54750 | PPI |
| MS.gene059329 | MS.gene038651 | PPI |
| MS.gene059329 | MS.gene041740 | PPI |
| MS.gene059329 | MS.gene041741 | PPI |
| MS.gene059329 | MS.gene006015 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059329.t1 | MTR_1g095890 | 89.247 | 186 | 19 | 1 | 1 | 185 | 1 | 186 | 2.74e-121 | 340 |
| MS.gene059329.t1 | MTR_1g095900 | 78.919 | 185 | 39 | 0 | 1 | 185 | 1 | 185 | 9.82e-108 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059329.t1 | AT2G35810 | 64.088 | 181 | 58 | 3 | 7 | 184 | 22 | 198 | 5.93e-84 | 246 |
| MS.gene059329.t1 | AT2G35810 | 64.088 | 181 | 58 | 3 | 7 | 184 | 22 | 198 | 5.93e-84 | 246 |
| MS.gene059329.t1 | AT2G35820 | 63.333 | 180 | 60 | 2 | 7 | 184 | 8 | 183 | 2.34e-82 | 242 |
| MS.gene059329.t1 | AT2G35830 | 64.641 | 181 | 58 | 3 | 7 | 184 | 8 | 185 | 2.77e-81 | 239 |
| MS.gene059329.t1 | AT2G35820 | 63.333 | 180 | 60 | 2 | 7 | 184 | 98 | 273 | 1.34e-80 | 241 |
| MS.gene059329.t1 | AT2G35830 | 63.536 | 181 | 55 | 4 | 7 | 184 | 8 | 180 | 2.69e-77 | 229 |
Find 49 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1.4:+74555596 | MS.gene059329:CDS |
| TCACCGGACGGCGAGGAGTT+TGG | 0.361360 | 1.4:+74554337 | MS.gene059329:CDS |
| GATCCATTGGTGGTAATGTT+TGG | 0.407930 | 1.4:+74555588 | MS.gene059329:CDS |
| TCCTGCCATTGAGGATGTCC+AGG | 0.418084 | 1.4:+74555712 | MS.gene059329:CDS |
| TGTTGATTCAAATGAAATCA+AGG | 0.432271 | 1.4:+74555637 | MS.gene059329:CDS |
| TAGAAAACCTGGGAATTCCT+TGG | 0.438964 | 1.4:-74554387 | None:intergenic |
| GACCTGACCGTACTCCTTGA+AGG | 0.446533 | 1.4:-74554305 | None:intergenic |
| AGCAACTCCGTCAACCTTCA+AGG | 0.460651 | 1.4:+74554291 | MS.gene059329:CDS |
| AGAAAACCTGGGAATTCCTT+GGG | 0.474456 | 1.4:-74554386 | None:intergenic |
| AGGTCAAGTTGAGCATCGTT+TGG | 0.477044 | 1.4:-74554361 | None:intergenic |
| GGACCAAACTCCTCGCCGTC+CGG | 0.492800 | 1.4:-74554340 | None:intergenic |
| TCATTTGAATCAACAATGGA+TGG | 0.494781 | 1.4:-74555629 | None:intergenic |
| TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 1.4:+74555796 | MS.gene059329:CDS |
| ACCTCACCCAAGGAATTCCC+AGG | 0.499024 | 1.4:+74554380 | MS.gene059329:CDS |
| CCGTACTCCTTGAAGGTTGA+CGG | 0.504142 | 1.4:-74554298 | None:intergenic |
| GTGATATTAGAAAACTTAAG+TGG | 0.517430 | 1.4:-74555536 | None:intergenic |
| ACCTGGACATCCTCAATGGC+AGG | 0.518519 | 1.4:-74555713 | None:intergenic |
| ACTCAATGCCTTGGATCCAT+TGG | 0.518618 | 1.4:+74555575 | MS.gene059329:CDS |
| AACCTTCAAGGAGTACGGTC+AGG | 0.537192 | 1.4:+74554303 | MS.gene059329:CDS |
| ACCTGGGAATTCCTTGGGTG+AGG | 0.537872 | 1.4:-74554381 | None:intergenic |
| AGCCTGAAACCTTGAAAACC+TGG | 0.540305 | 1.4:-74555730 | None:intergenic |
| CAATGCCTTGGATCCATTGG+TGG | 0.542939 | 1.4:+74555578 | MS.gene059329:CDS |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | 1.4:-74555591 | None:intergenic |
| GAAAACCTGGACATCCTCAA+TGG | 0.550406 | 1.4:-74555717 | None:intergenic |
| TGAAGCTTAATCGTGGGACA+TGG | 0.559854 | 1.4:+74555762 | MS.gene059329:CDS |
| GCAAGTGTGACTCAATGCCT+TGG | 0.560708 | 1.4:+74555566 | MS.gene059329:CDS |
| TCAGGTCATTGAGGCTTCAC+CGG | 0.564970 | 1.4:+74554321 | MS.gene059329:CDS |
| GATTTCATTTGAATCAACAA+TGG | 0.567401 | 1.4:-74555633 | None:intergenic |
| CCGTCAACCTTCAAGGAGTA+CGG | 0.572133 | 1.4:+74554298 | MS.gene059329:CDS |
| TTATGTGCCTCCTGCCATTG+AGG | 0.572418 | 1.4:+74555703 | MS.gene059329:CDS |
| GTCATTGAGGCTTCACCGGA+CGG | 0.573850 | 1.4:+74554325 | MS.gene059329:CDS |
| AATCGTGGGACATGGCATGC+GGG | 0.581050 | 1.4:+74555770 | MS.gene059329:CDS |
| AATTTCTGAAGCTTAATCGT+GGG | 0.591063 | 1.4:+74555756 | MS.gene059329:CDS |
| CATTACCACCAATGGATCCA+AGG | 0.593498 | 1.4:-74555583 | None:intergenic |
| TGATATTAGAAAACTTAAGT+GGG | 0.595478 | 1.4:-74555535 | None:intergenic |
| ATCATAAATGGAGAGCGTAA+AGG | 0.598064 | 1.4:+74554246 | None:intergenic |
| TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1.4:+74555601 | MS.gene059329:CDS |
| AAATTTCTGAAGCTTAATCG+TGG | 0.608012 | 1.4:+74555755 | MS.gene059329:CDS |
| TAATCGTGGGACATGGCATG+CGG | 0.608942 | 1.4:+74555769 | MS.gene059329:CDS |
| ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 1.4:-74555794 | None:intergenic |
| GCTCAACTTGACCTCACCCA+AGG | 0.622952 | 1.4:+74554370 | MS.gene059329:CDS |
| AAATGAAATCAAGGATGACA+CGG | 0.629245 | 1.4:+74555646 | MS.gene059329:CDS |
| TGAGGCTTCACCGGACGGCG+AGG | 0.633096 | 1.4:+74554330 | MS.gene059329:CDS |
| GTGCTTCTTAAAGTTGTGTG+TGG | 0.641404 | 1.4:-74556016 | None:intergenic |
| CACAACTTTAAGAAGCACAA+TGG | 0.641416 | 1.4:+74556021 | MS.gene059329:CDS |
| AATGAAATCAAGGATGACAC+GGG | 0.656842 | 1.4:+74555647 | MS.gene059329:CDS |
| GGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 1.4:+74554312 | MS.gene059329:CDS |
| TGGACATCCTCAATGGCAGG+AGG | 0.702078 | 1.4:-74555710 | None:intergenic |
| ACAGTCGTGAAATCGCGCAG+CGG | 0.734475 | 1.4:+74555674 | MS.gene059329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGGAAACAAAAAAAAATA+TGG | - | chr1.4:74555220-74555239 | None:intergenic | 15.0% |
| !! | ATATTATCTTTGTTAAACAT+CGG | + | chr1.4:74554775-74554794 | MS.gene059329:intron | 15.0% |
| !!! | TTTATTGTTTTATTTGATGT+TGG | + | chr1.4:74554663-74554682 | MS.gene059329:intron | 15.0% |
| !! | AATTGAGAAAAGACTATAAA+TGG | + | chr1.4:74554737-74554756 | MS.gene059329:intron | 20.0% |
| !! | ACACATTATTTCAATAAGTT+AGG | - | chr1.4:74555481-74555500 | None:intergenic | 20.0% |
| !! | ACATTAAAAGTTTGATAAGT+TGG | - | chr1.4:74554421-74554440 | None:intergenic | 20.0% |
| !! | AGAAACTTGAAACTATTATT+TGG | + | chr1.4:74554462-74554481 | MS.gene059329:intron | 20.0% |
| !! | TAAGTAAAATTGACAATGAT+TGG | - | chr1.4:74554950-74554969 | None:intergenic | 20.0% |
| !! | TGATATTAGAAAACTTAAGT+GGG | - | chr1.4:74555538-74555557 | None:intergenic | 20.0% |
| !!! | AATTTTGTAGATGTCAAATA+TGG | + | chr1.4:74554516-74554535 | MS.gene059329:intron | 20.0% |
| !!! | ATTGAAATAATGTGTTTTGT+AGG | + | chr1.4:74555486-74555505 | MS.gene059329:intron | 20.0% |
| !!! | CTACAAAATTGTTGTTATTT+GGG | - | chr1.4:74554506-74554525 | None:intergenic | 20.0% |
| !!! | CTTATTTTTGTCTTTCTTTA+TGG | + | chr1.4:74555929-74555948 | MS.gene059329:intron | 20.0% |
| !!! | TCTACAAAATTGTTGTTATT+TGG | - | chr1.4:74554507-74554526 | None:intergenic | 20.0% |
| ! | AATTTATGCATAGCATCAAT+AGG | - | chr1.4:74555238-74555257 | None:intergenic | 25.0% |
| ! | ATGTTGTTGTGGTTTATATA+TGG | + | chr1.4:74555960-74555979 | MS.gene059329:intron | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr1.4:74555797-74555816 | None:intergenic | 25.0% |
| ! | CTAATCTGTATCTATGATAA+CGG | - | chr1.4:74554815-74554834 | None:intergenic | 25.0% |
| ! | CTTTACGCAACAATAATTAA+TGG | - | chr1.4:74554561-74554580 | None:intergenic | 25.0% |
| ! | GAATGCCAAGATAATTAATA+GGG | - | chr1.4:74555276-74555295 | None:intergenic | 25.0% |
| ! | GATTTCATTTGAATCAACAA+TGG | - | chr1.4:74555636-74555655 | None:intergenic | 25.0% |
| ! | GTGATATTAGAAAACTTAAG+TGG | - | chr1.4:74555539-74555558 | None:intergenic | 25.0% |
| ! | TAGTACCCTATTAATTATCT+TGG | + | chr1.4:74555268-74555287 | MS.gene059329:intron | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr1.4:74555796-74555815 | MS.gene059329:CDS | 25.0% |
| ! | TGAATGCCAAGATAATTAAT+AGG | - | chr1.4:74555277-74555296 | None:intergenic | 25.0% |
| !!! | TACAAGTTAAATTGAGTTGA+TGG | - | chr1.4:74555405-74555424 | None:intergenic | 25.0% |
| !!! | TAGTTTTGATCAACTTTGAT+TGG | + | chr1.4:74554621-74554640 | MS.gene059329:intron | 25.0% |
| !!! | TGTTGATTCAAATGAAATCA+AGG | + | chr1.4:74555637-74555656 | MS.gene059329:CDS | 25.0% |
| AAATGAAATCAAGGATGACA+CGG | + | chr1.4:74555646-74555665 | MS.gene059329:CDS | 30.0% | |
| AATTGACAATGATTGGAGTA+TGG | - | chr1.4:74554943-74554962 | None:intergenic | 30.0% | |
| ATCAAAACTACTACTGAAAG+TGG | - | chr1.4:74554611-74554630 | None:intergenic | 30.0% | |
| ATCCATTGATGAAAGAAACT+TGG | + | chr1.4:74555344-74555363 | MS.gene059329:intron | 30.0% | |
| ATTTGAGAGGCTAGAAATAT+TGG | + | chr1.4:74555320-74555339 | MS.gene059329:intron | 30.0% | |
| CAATAAGTTAGGACATTTGT+TGG | - | chr1.4:74555470-74555489 | None:intergenic | 30.0% | |
| CACTGTATATCAAATTTGAG+AGG | + | chr1.4:74555307-74555326 | MS.gene059329:intron | 30.0% | |
| CTCTCAAATTTGATATACAG+TGG | - | chr1.4:74555309-74555328 | None:intergenic | 30.0% | |
| GATGCACACATAATATTAGA+GGG | + | chr1.4:74554857-74554876 | MS.gene059329:intron | 30.0% | |
| GGGTACAATTGAAAACAATT+AGG | + | chr1.4:74555111-74555130 | MS.gene059329:intron | 30.0% | |
| GGTGAAAAAATAGAAAACCT+GGG | - | chr1.4:74554400-74554419 | None:intergenic | 30.0% | |
| TCAAATTCTCGATACGATAT+GGG | - | chr1.4:74555036-74555055 | None:intergenic | 30.0% | |
| TCATTTGAATCAACAATGGA+TGG | - | chr1.4:74555632-74555651 | None:intergenic | 30.0% | |
| TGATGCACACATAATATTAG+AGG | + | chr1.4:74554856-74554875 | MS.gene059329:intron | 30.0% | |
| TGGTGAAAAAATAGAAAACC+TGG | - | chr1.4:74554401-74554420 | None:intergenic | 30.0% | |
| TGTATAACACTCACTTGAAA+GGG | - | chr1.4:74555875-74555894 | None:intergenic | 30.0% | |
| TTCAAATTCTCGATACGATA+TGG | - | chr1.4:74555037-74555056 | None:intergenic | 30.0% | |
| !! | AAATTTCTGAAGCTTAATCG+TGG | + | chr1.4:74555755-74555774 | MS.gene059329:CDS | 30.0% |
| !! | AATTTCTGAAGCTTAATCGT+GGG | + | chr1.4:74555756-74555775 | MS.gene059329:CDS | 30.0% |
| !! | CAAAATTGTTGTTATTTGGG+AGG | - | chr1.4:74554503-74554522 | None:intergenic | 30.0% |
| !! | TGTCTTTCTTTATGGTTTTG+TGG | + | chr1.4:74555937-74555956 | MS.gene059329:intron | 30.0% |
| !!! | GGTTTTTTTATTCTGTGTAC+AGG | + | chr1.4:74555981-74556000 | MS.gene059329:intron | 30.0% |
| AAGTATATGAGCTTCATTGG+AGG | + | chr1.4:74555090-74555109 | MS.gene059329:intron | 35.0% | |
| AATGAAATCAAGGATGACAC+GGG | + | chr1.4:74555647-74555666 | MS.gene059329:CDS | 35.0% | |
| AATGATTGGAGTATGGATGT+CGG | - | chr1.4:74554936-74554955 | None:intergenic | 35.0% | |
| AGTACTAACTCTACACAGTT+TGG | + | chr1.4:74555160-74555179 | MS.gene059329:intron | 35.0% | |
| AGTATATGAGCTTCATTGGA+GGG | + | chr1.4:74555091-74555110 | MS.gene059329:intron | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | chr1.4:74555594-74555613 | None:intergenic | 35.0% | |
| ATTAGGTCGAAAGTTGAAAC+TGG | + | chr1.4:74555128-74555147 | MS.gene059329:intron | 35.0% | |
| CACCTCCAAAAATGAAGAAT+CGG | + | chr1.4:74554896-74554915 | MS.gene059329:intron | 35.0% | |
| GTACTAACTCTACACAGTTT+GGG | + | chr1.4:74555161-74555180 | MS.gene059329:intron | 35.0% | |
| GTCAAGTATATGAGCTTCAT+TGG | + | chr1.4:74555087-74555106 | MS.gene059329:intron | 35.0% | |
| GTGTATAACACTCACTTGAA+AGG | - | chr1.4:74555876-74555895 | None:intergenic | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | chr1.4:74555601-74555620 | MS.gene059329:CDS | 35.0% | |
| TGCCAAGTTTCTTTCATCAA+TGG | - | chr1.4:74555349-74555368 | None:intergenic | 35.0% | |
| TTAGGTCGAAAGTTGAAACT+GGG | + | chr1.4:74555129-74555148 | MS.gene059329:intron | 35.0% | |
| TTGCGTAAAGCTTGAATTTC+TGG | + | chr1.4:74554571-74554590 | MS.gene059329:intron | 35.0% | |
| TTGTATTAACCAAGCAAGTG+TGG | - | chr1.4:74554718-74554737 | None:intergenic | 35.0% | |
| ! | CACAACTTTAAGAAGCACAA+TGG | + | chr1.4:74556021-74556040 | MS.gene059329:CDS | 35.0% |
| ! | TAAGTTAGGACATTTGTTGG+AGG | - | chr1.4:74555467-74555486 | None:intergenic | 35.0% |
| ! | TTTGATATACAGTGGTTTGC+TGG | - | chr1.4:74555301-74555320 | None:intergenic | 35.0% |
| !! | ATTCTTCATTTTTGGAGGTG+CGG | - | chr1.4:74554896-74554915 | None:intergenic | 35.0% |
| !! | TTGATATACAGTGGTTTGCT+GGG | - | chr1.4:74555300-74555319 | None:intergenic | 35.0% |
| !!! | AGACACCGATTCTTCATTTT+TGG | - | chr1.4:74554904-74554923 | None:intergenic | 35.0% |
| ACTTGACACGATATCGATAC+TGG | - | chr1.4:74555074-74555093 | None:intergenic | 40.0% | |
| AGAAAACCTGGGAATTCCTT+GGG | - | chr1.4:74554389-74554408 | None:intergenic | 40.0% | |
| CTTGACACGATATCGATACT+GGG | - | chr1.4:74555073-74555092 | None:intergenic | 40.0% | |
| GTGCTTCTTAAAGTTGTGTG+TGG | - | chr1.4:74556019-74556038 | None:intergenic | 40.0% | |
| TAACACTCACTTGAAAGGGA+AGG | - | chr1.4:74555871-74555890 | None:intergenic | 40.0% | |
| TAGAAAACCTGGGAATTCCT+TGG | - | chr1.4:74554390-74554409 | None:intergenic | 40.0% | |
| ! | GATCCATTGGTGGTAATGTT+TGG | + | chr1.4:74555588-74555607 | MS.gene059329:CDS | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1.4:74555596-74555615 | MS.gene059329:CDS | 40.0% |
| !! | AGAGCACTGCAAATGAATTC+AGG | - | chr1.4:74555898-74555917 | None:intergenic | 40.0% |
| !! | TTCTTCATTTTTGGAGGTGC+GGG | - | chr1.4:74554895-74554914 | None:intergenic | 40.0% |
| !!! | CACCGATTCTTCATTTTTGG+AGG | - | chr1.4:74554901-74554920 | None:intergenic | 40.0% |
| !!! | TGGTTTTGTGGATGTTGTTG+TGG | + | chr1.4:74555949-74555968 | MS.gene059329:intron | 40.0% |
| ACTCAATGCCTTGGATCCAT+TGG | + | chr1.4:74555575-74555594 | MS.gene059329:CDS | 45.0% | |
| AGCCTGAAACCTTGAAAACC+TGG | - | chr1.4:74555733-74555752 | None:intergenic | 45.0% | |
| CATTACCACCAATGGATCCA+AGG | - | chr1.4:74555586-74555605 | None:intergenic | 45.0% | |
| GAAAACCTGGACATCCTCAA+TGG | - | chr1.4:74555720-74555739 | None:intergenic | 45.0% | |
| GAAAGTTGAAACTGGGTCAG+AGG | + | chr1.4:74555136-74555155 | MS.gene059329:intron | 45.0% | |
| GCAGTTATCGTGAGATGAAG+GGG | - | chr1.4:74554696-74554715 | None:intergenic | 45.0% | |
| GGCAGTTATCGTGAGATGAA+GGG | - | chr1.4:74554697-74554716 | None:intergenic | 45.0% | |
| TGAAGCTTAATCGTGGGACA+TGG | + | chr1.4:74555762-74555781 | MS.gene059329:CDS | 45.0% | |
| TGGCAGTTATCGTGAGATGA+AGG | - | chr1.4:74554698-74554717 | None:intergenic | 45.0% | |
| ! | AGGACATTTGTTGGAGGACT+TGG | - | chr1.4:74555461-74555480 | None:intergenic | 45.0% |
| ! | TGAGGATGTCCAGGTTTTCA+AGG | + | chr1.4:74555721-74555740 | MS.gene059329:CDS | 45.0% |
| !! | AGGTCAAGTTGAGCATCGTT+TGG | - | chr1.4:74554364-74554383 | None:intergenic | 45.0% |
| !! | GTCCAGGTTTTCAAGGTTTC+AGG | + | chr1.4:74555728-74555747 | MS.gene059329:CDS | 45.0% |
| !! | TCTTCATTTTTGGAGGTGCG+GGG | - | chr1.4:74554894-74554913 | None:intergenic | 45.0% |
| AGCAACTCCGTCAACCTTCA+AGG | + | chr1.4:74554291-74554310 | MS.gene059329:CDS | 50.0% | |
| CAATGCCTTGGATCCATTGG+TGG | + | chr1.4:74555578-74555597 | MS.gene059329:CDS | 50.0% | |
| CCGTACTCCTTGAAGGTTGA+CGG | - | chr1.4:74554301-74554320 | None:intergenic | 50.0% | |
| CCGTCAACCTTCAAGGAGTA+CGG | + | chr1.4:74554298-74554317 | MS.gene059329:CDS | 50.0% | |
| CGATAACTGCCACACTTGCT+TGG | + | chr1.4:74554706-74554725 | MS.gene059329:intron | 50.0% | |
| GCAAGTGTGACTCAATGCCT+TGG | + | chr1.4:74555566-74555585 | MS.gene059329:CDS | 50.0% | |
| TAATCGTGGGACATGGCATG+CGG | + | chr1.4:74555769-74555788 | MS.gene059329:CDS | 50.0% | |
| TCAGGTCATTGAGGCTTCAC+CGG | + | chr1.4:74554321-74554340 | MS.gene059329:CDS | 50.0% | |
| TTATGTGCCTCCTGCCATTG+AGG | + | chr1.4:74555703-74555722 | MS.gene059329:CDS | 50.0% | |
| ! | AACCTTCAAGGAGTACGGTC+AGG | + | chr1.4:74554303-74554322 | MS.gene059329:CDS | 50.0% |
| AATCGTGGGACATGGCATGC+GGG | + | chr1.4:74555770-74555789 | MS.gene059329:CDS | 55.0% | |
| ACAGTCGTGAAATCGCGCAG+CGG | + | chr1.4:74555674-74555693 | MS.gene059329:CDS | 55.0% | |
| ACCTCACCCAAGGAATTCCC+AGG | + | chr1.4:74554380-74554399 | MS.gene059329:CDS | 55.0% | |
| ACCTGGACATCCTCAATGGC+AGG | - | chr1.4:74555716-74555735 | None:intergenic | 55.0% | |
| ACCTGGGAATTCCTTGGGTG+AGG | - | chr1.4:74554384-74554403 | None:intergenic | 55.0% | |
| GACCTGACCGTACTCCTTGA+AGG | - | chr1.4:74554308-74554327 | None:intergenic | 55.0% | |
| GCTCAACTTGACCTCACCCA+AGG | + | chr1.4:74554370-74554389 | MS.gene059329:CDS | 55.0% | |
| GGAGTACGGTCAGGTCATTG+AGG | + | chr1.4:74554312-74554331 | MS.gene059329:CDS | 55.0% | |
| GTCATTGAGGCTTCACCGGA+CGG | + | chr1.4:74554325-74554344 | MS.gene059329:CDS | 55.0% | |
| TCCTGCCATTGAGGATGTCC+AGG | + | chr1.4:74555712-74555731 | MS.gene059329:CDS | 55.0% | |
| TGGACATCCTCAATGGCAGG+AGG | - | chr1.4:74555713-74555732 | None:intergenic | 55.0% | |
| GGACCAAACTCCTCGCCGTC+CGG | - | chr1.4:74554343-74554362 | None:intergenic | 65.0% | |
| TCACCGGACGGCGAGGAGTT+TGG | + | chr1.4:74554337-74554356 | MS.gene059329:CDS | 65.0% | |
| ! | TTGGAGGTGCGGGGCTTCAC+AGG | - | chr1.4:74554885-74554904 | None:intergenic | 65.0% |
| TGAGGCTTCACCGGACGGCG+AGG | + | chr1.4:74554330-74554349 | MS.gene059329:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 74554253 | 74556068 | 74554253 | ID=MS.gene059329 |
| chr1.4 | mRNA | 74554253 | 74556068 | 74554253 | ID=MS.gene059329.t1;Parent=MS.gene059329 |
| chr1.4 | exon | 74554253 | 74554401 | 74554253 | ID=MS.gene059329.t1.exon1;Parent=MS.gene059329.t1 |
| chr1.4 | CDS | 74554253 | 74554401 | 74554253 | ID=cds.MS.gene059329.t1;Parent=MS.gene059329.t1 |
| chr1.4 | exon | 74555508 | 74555850 | 74555508 | ID=MS.gene059329.t1.exon2;Parent=MS.gene059329.t1 |
| chr1.4 | CDS | 74555508 | 74555850 | 74555508 | ID=cds.MS.gene059329.t1;Parent=MS.gene059329.t1 |
| chr1.4 | exon | 74556003 | 74556068 | 74556003 | ID=MS.gene059329.t1.exon3;Parent=MS.gene059329.t1 |
| chr1.4 | CDS | 74556003 | 74556068 | 74556003 | ID=cds.MS.gene059329.t1;Parent=MS.gene059329.t1 |
| Gene Sequence |
| Protein sequence |
