Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33992.t1 | XP_003591981.1 | 93 | 185 | 13 | 0 | 1 | 185 | 1 | 185 | 2.70E-96 | 361.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33992.t1 | G7I9N5 | 93.0 | 185 | 13 | 0 | 1 | 185 | 1 | 185 | 1.9e-96 | 361.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054742 | MS.gene33992 | 0.8311 | 2.02E-55 | -1.69E-46 |
MS.gene056330 | MS.gene33992 | 0.80698 | 6.32E-50 | -1.69E-46 |
MS.gene056920 | MS.gene33992 | 0.832589 | 8.67E-56 | -1.69E-46 |
MS.gene056923 | MS.gene33992 | 0.814375 | 1.59E-51 | -1.69E-46 |
MS.gene056924 | MS.gene33992 | 0.804927 | 1.71E-49 | -1.69E-46 |
MS.gene057261 | MS.gene33992 | 0.803908 | 2.78E-49 | -1.69E-46 |
MS.gene059328 | MS.gene33992 | 0.965148 | 3.13E-124 | -1.69E-46 |
MS.gene060087 | MS.gene33992 | 0.804353 | 2.25E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene059329 | MS.gene33992 | PPI |
MS.gene33992 | MS.gene041739 | PPI |
MS.gene33992 | MS.gene54750 | PPI |
MS.gene059328 | MS.gene33992 | PPI |
MS.gene33992 | MS.gene33993 | PPI |
MS.gene33992 | MS.gene041741 | PPI |
MS.gene33992 | MS.gene006015 | PPI |
MS.gene33992 | MS.gene33994 | PPI |
MS.gene33992 | MS.gene043625 | PPI |
MS.gene33997 | MS.gene33992 | PPI |
MS.gene33992 | MS.gene006013 | PPI |
MS.gene006014 | MS.gene33992 | PPI |
MS.gene54750 | MS.gene33992 | PPI |
MS.gene33993 | MS.gene33992 | PPI |
MS.gene041740 | MS.gene33992 | PPI |
MS.gene33992 | MS.gene038651 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33992.t1 | MTR_1g095900 | 92.973 | 185 | 13 | 0 | 1 | 185 | 1 | 185 | 1.28e-128 | 359 |
MS.gene33992.t1 | MTR_1g095890 | 80.108 | 186 | 36 | 1 | 1 | 185 | 1 | 186 | 7.48e-110 | 311 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33992.t1 | AT2G35830 | 65.193 | 181 | 57 | 3 | 7 | 184 | 8 | 185 | 1.99e-81 | 239 |
MS.gene33992.t1 | AT2G35810 | 62.431 | 181 | 61 | 3 | 7 | 184 | 22 | 198 | 6.97e-81 | 239 |
MS.gene33992.t1 | AT2G35810 | 62.431 | 181 | 61 | 3 | 7 | 184 | 22 | 198 | 6.97e-81 | 239 |
MS.gene33992.t1 | AT2G35820 | 61.111 | 180 | 64 | 2 | 7 | 184 | 8 | 183 | 1.53e-78 | 233 |
MS.gene33992.t1 | AT2G35820 | 61.111 | 180 | 64 | 2 | 7 | 184 | 98 | 273 | 7.38e-77 | 231 |
MS.gene33992.t1 | AT2G35830 | 64.088 | 181 | 54 | 4 | 7 | 184 | 8 | 180 | 2.61e-76 | 226 |
Find 49 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1.2:-72578795 | MS.gene33992:CDS |
TCACCGGACAGCGTGGGTTT+TGG | 0.306695 | 1.2:-72579936 | MS.gene33992:CDS |
CGGTGAAGCTTGACGAATTT+GGG | 0.309643 | 1.2:+72578639 | None:intergenic |
GCGGTGAAGCTTGACGAATT+TGG | 0.316031 | 1.2:+72578638 | None:intergenic |
CGTGAAGGTTGTGACAATTA+AGG | 0.393037 | 1.2:-72580012 | MS.gene33992:CDS |
GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 1.2:-72578803 | MS.gene33992:CDS |
ATGAAAACCTGGGAATTCCT+TGG | 0.436299 | 1.2:+72579886 | None:intergenic |
GACCTGAAATCTTGAAAACT+TGG | 0.446401 | 1.2:+72578661 | None:intergenic |
GAGATCAAGTTGAGCATCAT+GGG | 0.463032 | 1.2:+72579911 | None:intergenic |
GGACCAAAACCCACGCTGTC+CGG | 0.468006 | 1.2:+72579933 | None:intergenic |
ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 1.2:-72578816 | MS.gene33992:CDS |
TGAAAACCTGGGAATTCCTT+GGG | 0.471791 | 1.2:+72579887 | None:intergenic |
GTGATTCTAGAAAACTTTAG+TGG | 0.473787 | 1.2:+72578855 | None:intergenic |
CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 1.2:-72578813 | MS.gene33992:CDS |
ATCTCACCCAAGGAATTCCC+AGG | 0.491993 | 1.2:-72579893 | MS.gene33992:intron |
TGAGATCAAGTTGAGCATCA+TGG | 0.496448 | 1.2:+72579910 | None:intergenic |
CAAATGTGACTCAGTGCCTT+GGG | 0.497185 | 1.2:-72578824 | MS.gene33992:CDS |
CACCGCGGTACATGGCATGC+TGG | 0.498508 | 1.2:-72578621 | MS.gene33992:CDS |
TCAAGCTTCACCGCGGTACA+TGG | 0.506906 | 1.2:-72578629 | MS.gene33992:CDS |
TTATGTTCCTCCCGCCGTTG+AGG | 0.514150 | 1.2:-72578688 | MS.gene33992:CDS |
CCGTAGTCTTTGAAATTCGC+CGG | 0.534423 | 1.2:+72579975 | None:intergenic |
GCAAATGTGACTCAGTGCCT+TGG | 0.539728 | 1.2:-72578825 | MS.gene33992:CDS |
TCATCTGAATCAATAACTGA+TGG | 0.545432 | 1.2:+72578762 | None:intergenic |
ATACCAAACATTACCACCAA+TGG | 0.547916 | 1.2:+72578800 | None:intergenic |
AAACCCACGCTGTCCGGTGA+AGG | 0.550914 | 1.2:+72579939 | None:intergenic |
ACTTGGACGTCCTCAACGGC+GGG | 0.570976 | 1.2:+72578678 | None:intergenic |
TCAGGTCGTCGAGCCTTCAC+CGG | 0.571180 | 1.2:-72579952 | MS.gene33992:CDS |
GATGAAATCAAAGATGACTC+AGG | 0.574790 | 1.2:-72578744 | MS.gene33992:CDS |
TGATTCTAGAAAACTTTAGT+GGG | 0.575199 | 1.2:+72578856 | None:intergenic |
TAAGGCGATCGAAGCAACTC+CGG | 0.581240 | 1.2:-72579994 | MS.gene33992:CDS |
CACAACTTTAAGAATGACAA+TGG | 0.590296 | 1.2:-72578369 | MS.gene33992:CDS |
GAATTTCAAAGACTACGGTC+AGG | 0.596990 | 1.2:-72579970 | MS.gene33992:CDS |
AATAATAATGGAGAGCGTGA+AGG | 0.602932 | 1.2:-72580027 | None:intergenic |
TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1.2:-72578790 | MS.gene33992:CDS |
GAGCCTTCACCGGACAGCGT+GGG | 0.606872 | 1.2:-72579942 | MS.gene33992:CDS |
CGAGCCTTCACCGGACAGCG+TGG | 0.620785 | 1.2:-72579943 | MS.gene33992:CDS |
CATTACCACCAATGGACCCA+AGG | 0.621913 | 1.2:+72578808 | None:intergenic |
CCGGCGAATTTCAAAGACTA+CGG | 0.630902 | 1.2:-72579975 | MS.gene33992:CDS |
TGGACGTCCTCAACGGCGGG+AGG | 0.632229 | 1.2:+72578681 | None:intergenic |
GCTCAACTTGATCTCACCCA+AGG | 0.638310 | 1.2:-72579903 | MS.gene33992:CDS |
AACTTGGACGTCCTCAACGG+CGG | 0.650626 | 1.2:+72578677 | None:intergenic |
ATCGTGCTAGACTTAAATAG+AGG | 0.664302 | 1.2:+72578597 | None:intergenic |
TCTATTTAAGTCTAGCACGA+TGG | 0.669627 | 1.2:-72578595 | MS.gene33992:CDS |
GAAAACTTGGACGTCCTCAA+CGG | 0.683782 | 1.2:+72578674 | None:intergenic |
GACCAGCATGCCATGTACCG+CGG | 0.687313 | 1.2:+72578619 | None:intergenic |
ACGGTCGTTAAGTCGTGCGG+CGG | 0.689464 | 1.2:-72578717 | MS.gene33992:CDS |
AAAACGGTCGTTAAGTCGTG+CGG | 0.693454 | 1.2:-72578720 | MS.gene33992:CDS |
AGATCAAGTTGAGCATCATG+GGG | 0.694936 | 1.2:+72579912 | None:intergenic |
AAATTCGTCAAGCTTCACCG+CGG | 0.805303 | 1.2:-72578636 | MS.gene33992:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTAACATATAGAATT+TGG | + | chr1.2:72578538-72578557 | None:intergenic | 10.0% |
!!! | AACTAATTTTAATAATATGT+TGG | + | chr1.2:72579449-72579468 | None:intergenic | 10.0% |
!!! | ATTTTTTTCACTTTAATTTT+TGG | - | chr1.2:72578560-72578579 | MS.gene33992:intron | 10.0% |
!!! | TTATTTTGTCATTTTTTTAA+TGG | - | chr1.2:72579924-72579943 | MS.gene33992:CDS | 10.0% |
!!! | TTTTTTTCACTTTAATTTTT+GGG | - | chr1.2:72578561-72578580 | MS.gene33992:intron | 10.0% |
!! | AGGAAATATATATATGATAA+TGG | + | chr1.2:72578949-72578968 | None:intergenic | 15.0% |
!! | TTAAAGATAACATTTATCTT+TGG | - | chr1.2:72579055-72579074 | MS.gene33992:intron | 15.0% |
!!! | ATTTTCTTATTTTTGTAAGT+TGG | + | chr1.2:72578510-72578529 | None:intergenic | 15.0% |
!!! | TAATTTTAATAATATGTTGG+AGG | + | chr1.2:72579446-72579465 | None:intergenic | 15.0% |
!! | AATGAACTGATATGTTAAAA+AGG | + | chr1.2:72578913-72578932 | None:intergenic | 20.0% |
!! | ATCAAAAGGAAACAAAAAAA+AGG | + | chr1.2:72579182-72579201 | None:intergenic | 20.0% |
!! | GAACTAGTAAAATTTATTAG+AGG | - | chr1.2:72578770-72578789 | MS.gene33992:CDS | 20.0% |
!! | TATATACTACCCTATTATAT+TGG | - | chr1.2:72579220-72579239 | MS.gene33992:intron | 20.0% |
!! | TCAAAAGGAAACAAAAAAAA+GGG | + | chr1.2:72579181-72579200 | None:intergenic | 20.0% |
!! | TGAAAAACTTACATTTGTAT+TGG | + | chr1.2:72579816-72579835 | None:intergenic | 20.0% |
!!! | AAAATTAGTTTGTGTTTTGT+AGG | - | chr1.2:72579459-72579478 | MS.gene33992:intron | 20.0% |
!!! | AATACAAATGTAAGTTTTTC+AGG | - | chr1.2:72579815-72579834 | MS.gene33992:intron | 20.0% |
!!! | AATTTTGCTATAAAGTAGTT+TGG | + | chr1.2:72579259-72579278 | None:intergenic | 20.0% |
! | AAATGTGACGATTATTAGTA+TGG | - | chr1.2:72579092-72579111 | MS.gene33992:intron | 25.0% |
! | AATGTGACGATTATTAGTAT+GGG | - | chr1.2:72579093-72579112 | MS.gene33992:intron | 25.0% |
! | CATTATATTTCACACGAATA+AGG | + | chr1.2:72578969-72578988 | None:intergenic | 25.0% |
! | TACTTTATAGCAAAATTGAG+AGG | - | chr1.2:72579262-72579281 | MS.gene33992:intron | 25.0% |
!! | ATCTAAGACATACTACAAAA+CGG | + | chr1.2:72578890-72578909 | None:intergenic | 25.0% |
!! | TGATTCTAGAAAACTTTAGT+GGG | + | chr1.2:72579511-72579530 | None:intergenic | 25.0% |
!!! | CCAATAATATTCAGTTTTGA+CGG | + | chr1.2:72578854-72578873 | None:intergenic | 25.0% |
!!! | TGCTTTTTTATTATGTGTAC+AGG | - | chr1.2:72579955-72579974 | MS.gene33992:CDS | 25.0% |
!!! | TTTCACTTTAATTTTTGGGT+TGG | - | chr1.2:72578565-72578584 | MS.gene33992:CDS | 25.0% |
AGATGTAAGATTCCATTGAA+AGG | + | chr1.2:72579843-72579862 | None:intergenic | 30.0% | |
AGTTTATCCATAGCATCAAA+AGG | + | chr1.2:72579196-72579215 | None:intergenic | 30.0% | |
ATGTAAGATTCCATTGAAAG+GGG | + | chr1.2:72579841-72579860 | None:intergenic | 30.0% | |
CCGTCAAAACTGAATATTAT+TGG | - | chr1.2:72578851-72578870 | MS.gene33992:CDS | 30.0% | |
GATGTAAGATTCCATTGAAA+GGG | + | chr1.2:72579842-72579861 | None:intergenic | 30.0% | |
GATTATTAGTATGGGACATA+GGG | - | chr1.2:72579101-72579120 | MS.gene33992:intron | 30.0% | |
TAATAATATGTTGGAGGACT+TGG | + | chr1.2:72579440-72579459 | None:intergenic | 30.0% | |
TACCTATGATTAAGATCGAA+CGG | + | chr1.2:72578637-72578656 | None:intergenic | 30.0% | |
TATCAGTTAAATTGAGCTGA+TGG | + | chr1.2:72579364-72579383 | None:intergenic | 30.0% | |
TCATCTGAATCAATAACTGA+TGG | + | chr1.2:72579605-72579624 | None:intergenic | 30.0% | |
TTGGTGAAATATGAAAACCT+GGG | + | chr1.2:72578491-72578510 | None:intergenic | 30.0% | |
! | CACAACTTTAAGAATGACAA+TGG | - | chr1.2:72579995-72580014 | MS.gene33992:CDS | 30.0% |
! | GTGATTCTAGAAAACTTTAG+TGG | + | chr1.2:72579512-72579531 | None:intergenic | 30.0% |
! | TTTGCTATAAAGTAGTTTGG+TGG | + | chr1.2:72579256-72579275 | None:intergenic | 30.0% |
! | TTTGTTTCCTTTTGATGCTA+TGG | - | chr1.2:72579186-72579205 | MS.gene33992:intron | 30.0% |
AACCGTTCGATCTTAATCAT+AGG | - | chr1.2:72578632-72578651 | MS.gene33992:CDS | 35.0% | |
AGAGCATGTCAAATGAATTC+AGG | + | chr1.2:72579874-72579893 | None:intergenic | 35.0% | |
AGTACCAAGTTTACACTGTT+TGG | - | chr1.2:72579124-72579143 | MS.gene33992:intron | 35.0% | |
ATACCAAACATTACCACCAA+TGG | + | chr1.2:72579567-72579586 | None:intergenic | 35.0% | |
ATCGTGCTAGACTTAAATAG+AGG | + | chr1.2:72579770-72579789 | None:intergenic | 35.0% | |
CAAAGATGACTCAGGAAAAA+CGG | - | chr1.2:72579628-72579647 | MS.gene33992:intron | 35.0% | |
CGATTATTAGTATGGGACAT+AGG | - | chr1.2:72579100-72579119 | MS.gene33992:intron | 35.0% | |
GACCTGAAATCTTGAAAACT+TGG | + | chr1.2:72579706-72579725 | None:intergenic | 35.0% | |
GATGAAATCAAAGATGACTC+AGG | - | chr1.2:72579620-72579639 | MS.gene33992:intron | 35.0% | |
GGGTGAATGCCAATATAATA+GGG | + | chr1.2:72579232-72579251 | None:intergenic | 35.0% | |
GTACCAAGTTTACACTGTTT+GGG | - | chr1.2:72579125-72579144 | MS.gene33992:intron | 35.0% | |
TAATGTTTGGTATCTTGGAG+TGG | - | chr1.2:72579574-72579593 | MS.gene33992:intron | 35.0% | |
TATAGCAAAATTGAGAGGCT+AGG | - | chr1.2:72579267-72579286 | MS.gene33992:intron | 35.0% | |
TCTATTTAAGTCTAGCACGA+TGG | - | chr1.2:72579769-72579788 | MS.gene33992:intron | 35.0% | |
TGCAAAGTTTCTTTCTTCGA+TGG | + | chr1.2:72579307-72579326 | None:intergenic | 35.0% | |
TGGGTGAATGCCAATATAAT+AGG | + | chr1.2:72579233-72579252 | None:intergenic | 35.0% | |
! | CTATAAAGTAGTTTGGTGGT+GGG | + | chr1.2:72579252-72579271 | None:intergenic | 35.0% |
! | GTTGGTGAAATATGAAAACC+TGG | + | chr1.2:72578492-72578511 | None:intergenic | 35.0% |
!! | ATGCTCTTTAGAGTAAGACA+TGG | - | chr1.2:72579887-72579906 | MS.gene33992:intron | 35.0% |
!! | GGACTTTTACAATCTAGAGT+TGG | - | chr1.2:72579790-72579809 | MS.gene33992:intron | 35.0% |
!! | GTCCAAGTTTTCAAGATTTC+AGG | - | chr1.2:72579701-72579720 | MS.gene33992:intron | 35.0% |
!! | TGCTCTTTAGAGTAAGACAT+GGG | - | chr1.2:72579888-72579907 | MS.gene33992:intron | 35.0% |
!! | TTTGGGTTGGATTGATCATT+TGG | - | chr1.2:72578578-72578597 | MS.gene33992:CDS | 35.0% |
ATGAAAACCTGGGAATTCCT+TGG | + | chr1.2:72578481-72578500 | None:intergenic | 40.0% | |
CAACCCAAACAGTGTAAACT+TGG | + | chr1.2:72579131-72579150 | None:intergenic | 40.0% | |
CGTGAAGGTTGTGACAATTA+AGG | - | chr1.2:72578352-72578371 | MS.gene33992:CDS | 40.0% | |
GAATTTCAAAGACTACGGTC+AGG | - | chr1.2:72578394-72578413 | MS.gene33992:intron | 40.0% | |
TGAAAACCTGGGAATTCCTT+GGG | + | chr1.2:72578480-72578499 | None:intergenic | 40.0% | |
! | GCTATAAAGTAGTTTGGTGG+TGG | + | chr1.2:72579253-72579272 | None:intergenic | 40.0% |
! | GGTGGTAATGTTTGGTATCT+TGG | - | chr1.2:72579569-72579588 | MS.gene33992:intron | 40.0% |
!! | AGATCAAGTTGAGCATCATG+GGG | + | chr1.2:72578455-72578474 | None:intergenic | 40.0% |
!! | GAGATCAAGTTGAGCATCAT+GGG | + | chr1.2:72578456-72578475 | None:intergenic | 40.0% |
!! | TGAGATCAAGTTGAGCATCA+TGG | + | chr1.2:72578457-72578476 | None:intergenic | 40.0% |
AAAACGGTCGTTAAGTCGTG+CGG | - | chr1.2:72579644-72579663 | MS.gene33992:intron | 45.0% | |
AAATTCGTCAAGCTTCACCG+CGG | - | chr1.2:72579728-72579747 | MS.gene33992:intron | 45.0% | |
AGCAAAATTGAGAGGCTAGG+AGG | - | chr1.2:72579270-72579289 | MS.gene33992:intron | 45.0% | |
CAAATGTGACTCAGTGCCTT+GGG | - | chr1.2:72579540-72579559 | MS.gene33992:intron | 45.0% | |
CCGGCGAATTTCAAAGACTA+CGG | - | chr1.2:72578389-72578408 | MS.gene33992:CDS | 45.0% | |
CGGTGAAGCTTGACGAATTT+GGG | + | chr1.2:72579728-72579747 | None:intergenic | 45.0% | |
GAAAACTTGGACGTCCTCAA+CGG | + | chr1.2:72579693-72579712 | None:intergenic | 45.0% | |
TGAGAGGCTAGGAGGAATAT+TGG | - | chr1.2:72579278-72579297 | MS.gene33992:intron | 45.0% | |
! | GGTCCATTGGTGGTAATGTT+TGG | - | chr1.2:72579561-72579580 | MS.gene33992:intron | 45.0% |
!! | CCGTAGTCTTTGAAATTCGC+CGG | + | chr1.2:72578392-72578411 | None:intergenic | 45.0% |
!!! | GTTTTTCAGGCCCCTTTCAA+TGG | - | chr1.2:72579828-72579847 | MS.gene33992:intron | 45.0% |
ATCTCACCCAAGGAATTCCC+AGG | - | chr1.2:72578471-72578490 | MS.gene33992:intron | 50.0% | |
CATTACCACCAATGGACCCA+AGG | + | chr1.2:72579559-72579578 | None:intergenic | 50.0% | |
GCAAATGTGACTCAGTGCCT+TGG | - | chr1.2:72579539-72579558 | MS.gene33992:intron | 50.0% | |
GCGGTGAAGCTTGACGAATT+TGG | + | chr1.2:72579729-72579748 | None:intergenic | 50.0% | |
GCTCAACTTGATCTCACCCA+AGG | - | chr1.2:72578461-72578480 | MS.gene33992:intron | 50.0% | |
TAAGGCGATCGAAGCAACTC+CGG | - | chr1.2:72578370-72578389 | MS.gene33992:CDS | 50.0% | |
AACTTGGACGTCCTCAACGG+CGG | + | chr1.2:72579690-72579709 | None:intergenic | 55.0% | |
ACTCAGTGCCTTGGGTCCAT+TGG | - | chr1.2:72579548-72579567 | MS.gene33992:intron | 55.0% | |
TCAAGCTTCACCGCGGTACA+TGG | - | chr1.2:72579735-72579754 | MS.gene33992:intron | 55.0% | |
TTATGTTCCTCCCGCCGTTG+AGG | - | chr1.2:72579676-72579695 | MS.gene33992:intron | 55.0% | |
AAACCCACGCTGTCCGGTGA+AGG | + | chr1.2:72578428-72578447 | None:intergenic | 60.0% | |
ACGGTCGTTAAGTCGTGCGG+CGG | - | chr1.2:72579647-72579666 | MS.gene33992:intron | 60.0% | |
ACTTGGACGTCCTCAACGGC+GGG | + | chr1.2:72579689-72579708 | None:intergenic | 60.0% | |
CAGTGCCTTGGGTCCATTGG+TGG | - | chr1.2:72579551-72579570 | MS.gene33992:intron | 60.0% | |
GACCAGCATGCCATGTACCG+CGG | + | chr1.2:72579748-72579767 | None:intergenic | 60.0% | |
GGACCAAAACCCACGCTGTC+CGG | + | chr1.2:72578434-72578453 | None:intergenic | 60.0% | |
TCAGGTCGTCGAGCCTTCAC+CGG | - | chr1.2:72578412-72578431 | MS.gene33992:intron | 60.0% | |
! | TCACCGGACAGCGTGGGTTT+TGG | - | chr1.2:72578428-72578447 | MS.gene33992:intron | 60.0% |
CACCGCGGTACATGGCATGC+TGG | - | chr1.2:72579743-72579762 | MS.gene33992:intron | 65.0% | |
GAGCCTTCACCGGACAGCGT+GGG | - | chr1.2:72578422-72578441 | MS.gene33992:intron | 65.0% | |
CGAGCCTTCACCGGACAGCG+TGG | - | chr1.2:72578421-72578440 | MS.gene33992:intron | 70.0% | |
TGGACGTCCTCAACGGCGGG+AGG | + | chr1.2:72579686-72579705 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 72578344 | 72580042 | 72578344 | ID=MS.gene33992 |
chr1.2 | mRNA | 72578344 | 72580042 | 72578344 | ID=MS.gene33992.t1;Parent=MS.gene33992 |
chr1.2 | exon | 72579894 | 72580042 | 72579894 | ID=MS.gene33992.t1.exon1;Parent=MS.gene33992.t1 |
chr1.2 | CDS | 72579894 | 72580042 | 72579894 | ID=cds.MS.gene33992.t1;Parent=MS.gene33992.t1 |
chr1.2 | exon | 72578563 | 72578905 | 72578563 | ID=MS.gene33992.t1.exon2;Parent=MS.gene33992.t1 |
chr1.2 | CDS | 72578563 | 72578905 | 72578563 | ID=cds.MS.gene33992.t1;Parent=MS.gene33992.t1 |
chr1.2 | exon | 72578344 | 72578409 | 72578344 | ID=MS.gene33992.t1.exon3;Parent=MS.gene33992.t1 |
chr1.2 | CDS | 72578344 | 72578409 | 72578344 | ID=cds.MS.gene33992.t1;Parent=MS.gene33992.t1 |
Gene Sequence |
Protein sequence |