Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043625.t1 | XP_003591980.1 | 95.6 | 180 | 7 | 1 | 4 | 182 | 7 | 186 | 1.10E-94 | 355.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043625.t1 | G7I9N4 | 95.6 | 180 | 7 | 1 | 4 | 182 | 7 | 186 | 8.0e-95 | 355.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33994 | MS.gene043625 | PPI |
MS.gene038651 | MS.gene043625 | PPI |
MS.gene059329 | MS.gene043625 | PPI |
MS.gene041739 | MS.gene043625 | PPI |
MS.gene043625 | MS.gene006015 | PPI |
MS.gene043625 | MS.gene33994 | PPI |
MS.gene041740 | MS.gene043625 | PPI |
MS.gene059328 | MS.gene043625 | PPI |
MS.gene041741 | MS.gene043625 | PPI |
MS.gene043625 | MS.gene006013 | PPI |
MS.gene33992 | MS.gene043625 | PPI |
MS.gene006015 | MS.gene043625 | PPI |
MS.gene006014 | MS.gene043625 | PPI |
MS.gene043625 | MS.gene041739 | PPI |
MS.gene33997 | MS.gene043625 | PPI |
MS.gene54750 | MS.gene043625 | PPI |
MS.gene006013 | MS.gene043625 | PPI |
MS.gene33993 | MS.gene043625 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043625.t1 | MTR_1g095890 | 94.086 | 186 | 7 | 2 | 1 | 182 | 1 | 186 | 1.07e-127 | 356 |
MS.gene043625.t1 | MTR_1g095900 | 78.919 | 185 | 36 | 1 | 1 | 182 | 1 | 185 | 3.54e-105 | 299 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043625.t1 | AT2G35810 | 66.854 | 178 | 52 | 3 | 4 | 178 | 22 | 195 | 1.75e-85 | 250 |
MS.gene043625.t1 | AT2G35810 | 66.854 | 178 | 52 | 3 | 4 | 178 | 22 | 195 | 1.75e-85 | 250 |
MS.gene043625.t1 | AT2G35820 | 65.363 | 179 | 56 | 2 | 4 | 180 | 8 | 182 | 1.22e-84 | 248 |
MS.gene043625.t1 | AT2G35820 | 65.363 | 179 | 56 | 2 | 4 | 180 | 98 | 272 | 3.70e-83 | 247 |
MS.gene043625.t1 | AT2G35830 | 67.416 | 178 | 52 | 3 | 4 | 178 | 8 | 182 | 7.83e-83 | 243 |
MS.gene043625.t1 | AT2G35830 | 66.292 | 178 | 49 | 4 | 4 | 178 | 8 | 177 | 3.68e-78 | 231 |
Find 54 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACGGTTAAGCTTGAGAAATT+TGG | 0.260726 | 3.2:-45120482 | None:intergenic |
TCATCGGACGGTGAGGGGTT+TGG | 0.318746 | 3.2:+45119757 | MS.gene043625:CDS |
GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 3.2:+45120317 | MS.gene043625:CDS |
GGTGGTAATGTTTGGTACCT+TGG | 0.440274 | 3.2:+45120325 | MS.gene043625:CDS |
GACCTGACCGTACTCTTTGA+AGG | 0.444255 | 3.2:-45119725 | None:intergenic |
ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 3.2:+45120304 | MS.gene043625:CDS |
AGGTCAAGCTGAGCATCGTT+TGG | 0.468746 | 3.2:-45119781 | None:intergenic |
CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 3.2:+45120307 | MS.gene043625:CDS |
CAAGTGTGACTCAGTGCCTT+GGG | 0.479051 | 3.2:+45120296 | MS.gene043625:CDS |
CATAAAGCTCAAATTACTCA+TGG | 0.492947 | 3.2:-45120762 | None:intergenic |
GCAAGTGTGACTCAGTGCCT+TGG | 0.493326 | 3.2:+45120295 | MS.gene043625:CDS |
TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 3.2:+45120525 | MS.gene043625:CDS |
ACCTTAGCCAAGGAATTCCC+AGG | 0.496730 | 3.2:+45119800 | MS.gene043625:CDS |
AAATGAAATCAAGGATGACT+TGG | 0.500047 | 3.2:+45120375 | MS.gene043625:CDS |
GAGGCTTCATCGGACGGTGA+GGG | 0.503853 | 3.2:+45119751 | MS.gene043625:CDS |
ATGAAAACCTGGGAATTCCT+TGG | 0.506846 | 3.2:-45119807 | None:intergenic |
TCATTTGCATCAACAATGGA+TGG | 0.507162 | 3.2:-45120358 | None:intergenic |
ACCTGGGAATTCCTTGGCTA+AGG | 0.513339 | 3.2:-45119801 | None:intergenic |
TGTTGATGCAAATGAAATCA+AGG | 0.515537 | 3.2:+45120366 | MS.gene043625:CDS |
GTCATTGAGGCTTCATCGGA+CGG | 0.541534 | 3.2:+45119745 | MS.gene043625:CDS |
AACCGTGGGACATGGCATGC+TGG | 0.544561 | 3.2:+45120499 | MS.gene043625:CDS |
GATTTCATTTGCATCAACAA+TGG | 0.549245 | 3.2:-45120362 | None:intergenic |
AGGCTTCATCGGACGGTGAG+GGG | 0.550679 | 3.2:+45119752 | MS.gene043625:CDS |
GAAAACTTGAACATCCTCAA+TGG | 0.552500 | 3.2:-45120446 | None:intergenic |
TCAGGTCATTGAGGCTTCAT+CGG | 0.558495 | 3.2:+45119741 | MS.gene043625:CDS |
TCAAGCTTAACCGTGGGACA+TGG | 0.558912 | 3.2:+45120491 | MS.gene043625:CDS |
ACTTGAACATCCTCAATGGC+AGG | 0.565229 | 3.2:-45120442 | None:intergenic |
ACTTGCATGATGTGTGATGT+TGG | 0.565925 | 3.2:-45120278 | None:intergenic |
GACCTTCAAAGAGTACGGTC+AGG | 0.570961 | 3.2:+45119723 | MS.gene043625:CDS |
TTATGTGCCTCCTGCCATTG+AGG | 0.572418 | 3.2:+45120432 | MS.gene043625:CDS |
TGAGGCTTCATCGGACGGTG+AGG | 0.573414 | 3.2:+45119750 | MS.gene043625:CDS |
GTCCTTCTTAAAGTTGTGTG+TGG | 0.574527 | 3.2:-45120719 | None:intergenic |
TACCACACACAACTTTAAGA+AGG | 0.575142 | 3.2:+45120717 | MS.gene043625:CDS |
CCGTACTCTTTGAAGGTCGC+CGG | 0.579027 | 3.2:-45119718 | None:intergenic |
AATGGAGAGTGTGAAGGTGA+AGG | 0.586847 | 3.2:+45119681 | None:intergenic |
GAAGGCAATTGAAGCAACTC+CGG | 0.594897 | 3.2:+45119699 | MS.gene043625:CDS |
CACAACTTTAAGAAGGACAA+TGG | 0.594981 | 3.2:+45120724 | MS.gene043625:CDS |
GTACCAAACATTACCACCAA+TGG | 0.595761 | 3.2:-45120320 | None:intergenic |
GACCAGCATGCCATGTCCCA+CGG | 0.605299 | 3.2:-45120501 | None:intergenic |
CCGGCGACCTTCAAAGAGTA+CGG | 0.605471 | 3.2:+45119718 | MS.gene043625:CDS |
AATGAAATCAAGGATGACTT+GGG | 0.606584 | 3.2:+45120376 | MS.gene043625:CDS |
TAATGTTTGGTACCTTGGAG+TGG | 0.611311 | 3.2:+45120330 | MS.gene043625:CDS |
CTTTAAGAAGGACAATGGAG+TGG | 0.614786 | 3.2:+45120729 | MS.gene043625:CDS |
AAATTTCTCAAGCTTAACCG+TGG | 0.618191 | 3.2:+45120484 | MS.gene043625:CDS |
CATTACCACCAATGGACCCA+AGG | 0.621913 | 3.2:-45120312 | None:intergenic |
ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 3.2:-45120523 | None:intergenic |
TGGATGGCTTAGCCACTCCA+AGG | 0.635485 | 3.2:-45120342 | None:intergenic |
GCTCAGCTTGACCTTAGCCA+AGG | 0.638940 | 3.2:+45119790 | MS.gene043625:CDS |
AATTTCTCAAGCTTAACCGT+GGG | 0.640376 | 3.2:+45120485 | MS.gene043625:CDS |
AGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 3.2:+45119732 | MS.gene043625:CDS |
GTGATGTTGGAAAACTCAAG+TGG | 0.699314 | 3.2:-45120265 | None:intergenic |
TGAACATCCTCAATGGCAGG+AGG | 0.702078 | 3.2:-45120439 | None:intergenic |
GATCGGAATGGAGAGTGTGA+AGG | 0.706029 | 3.2:+45119675 | None:intergenic |
ACAGTCGTGAAGTCACACAG+CGG | 0.840888 | 3.2:+45120403 | MS.gene043625:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAATTCCATTAAGTTAC+AGG | - | chr3.2:45120205-45120224 | None:intergenic | 20.0% |
!! | ATTAATTCCATTAAGTTACA+GGG | - | chr3.2:45120204-45120223 | None:intergenic | 20.0% |
!!! | TTTATTGTTTTATCAGATCT+TGG | + | chr3.2:45120064-45120083 | MS.gene043625:intron | 20.0% |
! | ATTGTATCAGACTTAAATAG+AGG | - | chr3.2:45120526-45120545 | None:intergenic | 25.0% |
! | TCTATTTAAGTCTGATACAA+TGG | + | chr3.2:45120525-45120544 | MS.gene043625:CDS | 25.0% |
!!! | GGAATTAATTTGTGTTTGTT+AGG | + | chr3.2:45120215-45120234 | MS.gene043625:intron | 25.0% |
AAATGAAATCAAGGATGACT+TGG | + | chr3.2:45120375-45120394 | MS.gene043625:CDS | 30.0% | |
AATGAAATCAAGGATGACTT+GGG | + | chr3.2:45120376-45120395 | MS.gene043625:CDS | 30.0% | |
ATTGTTTAGATTCACAGAGA+TGG | + | chr3.2:45120040-45120059 | MS.gene043625:intron | 30.0% | |
GATTTCATTTGCATCAACAA+TGG | - | chr3.2:45120365-45120384 | None:intergenic | 30.0% | |
TCTATCAGCTTAATTTAGCT+GGG | + | chr3.2:45120162-45120181 | MS.gene043625:intron | 30.0% | |
TGTTGATGCAAATGAAATCA+AGG | + | chr3.2:45120366-45120385 | MS.gene043625:CDS | 30.0% | |
TTCTATCAGCTTAATTTAGC+TGG | + | chr3.2:45120161-45120180 | MS.gene043625:intron | 30.0% | |
! | GCATCGTTGATAAAAATTGA+AGG | - | chr3.2:45119837-45119856 | None:intergenic | 30.0% |
! | TGTTGATAAGTGTGATTAAG+AGG | - | chr3.2:45119863-45119882 | None:intergenic | 30.0% |
AAATTTCTCAAGCTTAACCG+TGG | + | chr3.2:45120484-45120503 | MS.gene043625:CDS | 35.0% | |
AATGTAACACTACACTGGAA+GGG | - | chr3.2:45120599-45120618 | None:intergenic | 35.0% | |
AATTTCTCAAGCTTAACCGT+GGG | + | chr3.2:45120485-45120504 | MS.gene043625:CDS | 35.0% | |
ACGGTTAAGCTTGAGAAATT+TGG | - | chr3.2:45120485-45120504 | None:intergenic | 35.0% | |
CATGTAATGTAACACTACAC+TGG | - | chr3.2:45120604-45120623 | None:intergenic | 35.0% | |
GAAAACTTGAACATCCTCAA+TGG | - | chr3.2:45120449-45120468 | None:intergenic | 35.0% | |
GTAGTAATTTCTCGCTGTTT+GGG | + | chr3.2:45120089-45120108 | MS.gene043625:intron | 35.0% | |
GTAGTTGCAATCATCTTGAT+TGG | + | chr3.2:45119883-45119902 | MS.gene043625:intron | 35.0% | |
TAATGTAACACTACACTGGA+AGG | - | chr3.2:45120600-45120619 | None:intergenic | 35.0% | |
TCATTTGCATCAACAATGGA+TGG | - | chr3.2:45120361-45120380 | None:intergenic | 35.0% | |
TGAAGGTTGAATGAAAACCT+GGG | - | chr3.2:45119820-45119839 | None:intergenic | 35.0% | |
TGTAGTAATTTCTCGCTGTT+TGG | + | chr3.2:45120088-45120107 | MS.gene043625:intron | 35.0% | |
TTGAAGGTTGAATGAAAACC+TGG | - | chr3.2:45119821-45119840 | None:intergenic | 35.0% | |
! | AGAGCATCACATATGAATTC+AGG | - | chr3.2:45120629-45120648 | None:intergenic | 35.0% |
! | CACAACTTTAAGAAGGACAA+TGG | + | chr3.2:45120724-45120743 | MS.gene043625:CDS | 35.0% |
! | GATTTTGAGCACTTTATCTC+AGG | - | chr3.2:45120125-45120144 | None:intergenic | 35.0% |
! | TACCACACACAACTTTAAGA+AGG | + | chr3.2:45120717-45120736 | MS.gene043625:CDS | 35.0% |
!! | GTTCAAGTTTTCAAGGTTTC+AGG | + | chr3.2:45120457-45120476 | MS.gene043625:CDS | 35.0% |
!! | TGAGGATGTTCAAGTTTTCA+AGG | + | chr3.2:45120450-45120469 | MS.gene043625:CDS | 35.0% |
!!! | TGGTTTTGTATTCTGTGTTC+AGG | + | chr3.2:45120684-45120703 | MS.gene043625:intron | 35.0% |
ACTTGCATGATGTGTGATGT+TGG | - | chr3.2:45120281-45120300 | None:intergenic | 40.0% | |
AGCTATGCCCTGTAACTTAA+TGG | + | chr3.2:45120194-45120213 | MS.gene043625:intron | 40.0% | |
ATGAAAACCTGGGAATTCCT+TGG | - | chr3.2:45119810-45119829 | None:intergenic | 40.0% | |
CAGTCGCTGTGATTAATGTA+TGG | + | chr3.2:45120664-45120683 | MS.gene043625:intron | 40.0% | |
GTACCAAACATTACCACCAA+TGG | - | chr3.2:45120323-45120342 | None:intergenic | 40.0% | |
GTCCTTCTTAAAGTTGTGTG+TGG | - | chr3.2:45120722-45120741 | None:intergenic | 40.0% | |
GTGATGTTGGAAAACTCAAG+TGG | - | chr3.2:45120268-45120287 | None:intergenic | 40.0% | |
TAATGTTTGGTACCTTGGAG+TGG | + | chr3.2:45120330-45120349 | MS.gene043625:CDS | 40.0% | |
! | CTTTAAGAAGGACAATGGAG+TGG | + | chr3.2:45120729-45120748 | MS.gene043625:CDS | 40.0% |
! | GATTGGTTAACCGCTTGTAT+TGG | + | chr3.2:45119900-45119919 | MS.gene043625:intron | 40.0% |
ACTTGAACATCCTCAATGGC+AGG | - | chr3.2:45120445-45120464 | None:intergenic | 45.0% | |
AGGTTCCATGTCAATACCAC+CGG | - | chr3.2:45119927-45119946 | None:intergenic | 45.0% | |
GAAGGCAATTGAAGCAACTC+CGG | + | chr3.2:45119699-45119718 | MS.gene043625:CDS | 45.0% | |
TAACACTACACTGGAAGGGA+AGG | - | chr3.2:45120595-45120614 | None:intergenic | 45.0% | |
TCAGGTCATTGAGGCTTCAT+CGG | + | chr3.2:45119741-45119760 | MS.gene043625:CDS | 45.0% | |
TTCGATTCTGCAGTCTGAGT+GGG | + | chr3.2:45119980-45119999 | MS.gene043625:intron | 45.0% | |
! | GGTCCATTGGTGGTAATGTT+TGG | + | chr3.2:45120317-45120336 | MS.gene043625:CDS | 45.0% |
! | GGTGGTAATGTTTGGTACCT+TGG | + | chr3.2:45120325-45120344 | MS.gene043625:CDS | 45.0% |
! | GTTAACCGCTTGTATTGGTC+CGG | + | chr3.2:45119905-45119924 | MS.gene043625:intron | 45.0% |
ACAGTCGTGAAGTCACACAG+CGG | + | chr3.2:45120403-45120422 | MS.gene043625:CDS | 50.0% | |
ACCTGGGAATTCCTTGGCTA+AGG | - | chr3.2:45119804-45119823 | None:intergenic | 50.0% | |
ACCTTAGCCAAGGAATTCCC+AGG | + | chr3.2:45119800-45119819 | MS.gene043625:CDS | 50.0% | |
AGAGTACGGTCAGGTCATTG+AGG | + | chr3.2:45119732-45119751 | MS.gene043625:CDS | 50.0% | |
AGTGAGTGTGCTCCTCTTCA+AGG | + | chr3.2:45119950-45119969 | MS.gene043625:intron | 50.0% | |
CAAGTGTGACTCAGTGCCTT+GGG | + | chr3.2:45120296-45120315 | MS.gene043625:CDS | 50.0% | |
CATTACCACCAATGGACCCA+AGG | - | chr3.2:45120315-45120334 | None:intergenic | 50.0% | |
GACCTGACCGTACTCTTTGA+AGG | - | chr3.2:45119728-45119747 | None:intergenic | 50.0% | |
GTCATTGAGGCTTCATCGGA+CGG | + | chr3.2:45119745-45119764 | MS.gene043625:CDS | 50.0% | |
GTTCGATTCTGCAGTCTGAG+TGG | + | chr3.2:45119979-45119998 | MS.gene043625:intron | 50.0% | |
TACCACCGGACCAATACAAG+CGG | - | chr3.2:45119913-45119932 | None:intergenic | 50.0% | |
TCAAGCTTAACCGTGGGACA+TGG | + | chr3.2:45120491-45120510 | MS.gene043625:CDS | 50.0% | |
TCGAACGTGAGACCTTGAAG+AGG | - | chr3.2:45119965-45119984 | None:intergenic | 50.0% | |
TGAACATCCTCAATGGCAGG+AGG | - | chr3.2:45120442-45120461 | None:intergenic | 50.0% | |
TTATGTGCCTCCTGCCATTG+AGG | + | chr3.2:45120432-45120451 | MS.gene043625:CDS | 50.0% | |
! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr3.2:45119784-45119803 | None:intergenic | 50.0% |
! | GACCTTCAAAGAGTACGGTC+AGG | + | chr3.2:45119723-45119742 | MS.gene043625:CDS | 50.0% |
!! | TTGGTCCGGTGGTATTGACA+TGG | + | chr3.2:45119919-45119938 | MS.gene043625:intron | 50.0% |
ACTCAGTGCCTTGGGTCCAT+TGG | + | chr3.2:45120304-45120323 | MS.gene043625:CDS | 55.0% | |
CCGGCGACCTTCAAAGAGTA+CGG | + | chr3.2:45119718-45119737 | MS.gene043625:CDS | 55.0% | |
GCAAGTGTGACTCAGTGCCT+TGG | + | chr3.2:45120295-45120314 | MS.gene043625:CDS | 55.0% | |
GCTCAGCTTGACCTTAGCCA+AGG | + | chr3.2:45119790-45119809 | MS.gene043625:CDS | 55.0% | |
TGGATGGCTTAGCCACTCCA+AGG | - | chr3.2:45120345-45120364 | None:intergenic | 55.0% | |
! | AACCGCTTGTATTGGTCCGG+TGG | + | chr3.2:45119908-45119927 | MS.gene043625:intron | 55.0% |
! | AGAGGAGCACACTCACTCTC+AGG | - | chr3.2:45119947-45119966 | None:intergenic | 55.0% |
! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr3.2:45119721-45119740 | None:intergenic | 55.0% |
AACCGTGGGACATGGCATGC+TGG | + | chr3.2:45120499-45120518 | MS.gene043625:CDS | 60.0% | |
AGGCTTCATCGGACGGTGAG+GGG | + | chr3.2:45119752-45119771 | MS.gene043625:CDS | 60.0% | |
CAGTGCCTTGGGTCCATTGG+TGG | + | chr3.2:45120307-45120326 | MS.gene043625:CDS | 60.0% | |
GACCAGCATGCCATGTCCCA+CGG | - | chr3.2:45120504-45120523 | None:intergenic | 60.0% | |
GAGGCTTCATCGGACGGTGA+GGG | + | chr3.2:45119751-45119770 | MS.gene043625:CDS | 60.0% | |
TCATCGGACGGTGAGGGGTT+TGG | + | chr3.2:45119757-45119776 | MS.gene043625:CDS | 60.0% | |
TGAGGCTTCATCGGACGGTG+AGG | + | chr3.2:45119750-45119769 | MS.gene043625:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 45119682 | 45120771 | 45119682 | ID=MS.gene043625 |
chr3.2 | mRNA | 45119682 | 45120771 | 45119682 | ID=MS.gene043625.t1;Parent=MS.gene043625 |
chr3.2 | exon | 45119682 | 45119821 | 45119682 | ID=MS.gene043625.t1.exon1;Parent=MS.gene043625.t1 |
chr3.2 | CDS | 45119682 | 45119821 | 45119682 | ID=cds.MS.gene043625.t1;Parent=MS.gene043625.t1 |
chr3.2 | exon | 45120237 | 45120579 | 45120237 | ID=MS.gene043625.t1.exon2;Parent=MS.gene043625.t1 |
chr3.2 | CDS | 45120237 | 45120579 | 45120237 | ID=cds.MS.gene043625.t1;Parent=MS.gene043625.t1 |
chr3.2 | exon | 45120706 | 45120771 | 45120706 | ID=MS.gene043625.t1.exon3;Parent=MS.gene043625.t1 |
chr3.2 | CDS | 45120706 | 45120771 | 45120706 | ID=cds.MS.gene043625.t1;Parent=MS.gene043625.t1 |
Gene Sequence |
Protein sequence |