AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33994

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33994.t1 MTR_1g095890 91.398 186 12 2 1 182 1 186 6.85e-124 347
MS.gene33994.t1 MTR_1g095900 77.297 185 39 1 1 182 1 185 5.74e-104 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33994.t1 AT2G35810 65.730 178 54 3 4 178 22 195 2.10e-84 247
MS.gene33994.t1 AT2G35810 65.730 178 54 3 4 178 22 195 2.10e-84 247
MS.gene33994.t1 AT2G35820 63.687 179 59 2 4 180 8 182 4.69e-83 244
MS.gene33994.t1 AT2G35820 63.687 179 59 2 4 180 98 272 1.60e-81 243
MS.gene33994.t1 AT2G35830 65.341 176 59 2 4 178 8 182 1.89e-81 239
MS.gene33994.t1 AT2G35830 64.205 176 56 3 4 178 8 177 9.29e-77 228

Find 50 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGTTAAGCTTGAGAAATT+TGG 0.260726 1.2:+72597885 None:intergenic
GGTGGTAATGTTTGGTATCT+TGG 0.281153 1.2:-72598042 MS.gene33994:CDS
TCATCGGACGGTGAGGGATT+TGG 0.343558 1.2:-72600452 MS.gene33994:CDS
AATGAAATCAAAGATGATTC+AGG 0.369755 1.2:-72597991 MS.gene33994:CDS
AACCTGAAACCTTGAAAACT+TGG 0.407022 1.2:+72597908 None:intergenic
GGTCCATTGGTGGTAATGTT+TGG 0.421411 1.2:-72598050 MS.gene33994:CDS
GACCTGACCGTACTCTTTGA+AGG 0.444255 1.2:+72600484 None:intergenic
ACTCAGTGCCTTGGGTCCAT+TGG 0.468229 1.2:-72598063 MS.gene33994:CDS
AGGTCAAGCTGAGCATCGTT+TGG 0.468746 1.2:+72600428 None:intergenic
CAGTGCCTTGGGTCCATTGG+TGG 0.474720 1.2:-72598060 MS.gene33994:CDS
CAAGTGTGACTCAGTGCCTT+GGG 0.479051 1.2:-72598071 MS.gene33994:CDS
GCAAGTGTGACTCAGTGCCT+TGG 0.493326 1.2:-72598072 MS.gene33994:CDS
TCATTTGAATCAACAATGGA+TGG 0.494781 1.2:+72598009 None:intergenic
GAAGGCAATTGAAGCAGCTC+CGG 0.496049 1.2:-72600510 MS.gene33994:CDS
TCTATTTAAGTCTGATACAA+TGG 0.496626 1.2:-72597842 MS.gene33994:CDS
ACCTTAGCCAAGGAATTCCC+AGG 0.496730 1.2:-72600409 MS.gene33994:intron
ACCTGGGAATTCCTTGGCTA+AGG 0.513339 1.2:+72600408 None:intergenic
AATGGAGAGTGTGAAGGTGA+AGG 0.517827 1.2:-72600528 MS.gene33994:CDS
ATGAAAACCTGGGAATTCCT+TGG 0.524061 1.2:+72600402 None:intergenic
GTCATTGAGGCTTCATCGGA+CGG 0.541534 1.2:-72600464 MS.gene33994:CDS
AACCGTGGGACATGGCATGC+TGG 0.544561 1.2:-72597868 MS.gene33994:CDS
ATACCAAACATTACCACCAA+TGG 0.547916 1.2:+72598047 None:intergenic
GAAAACTTGGACATCCTCAA+TGG 0.552522 1.2:+72597921 None:intergenic
TTATCTACCTCCTACCATTG+AGG 0.558166 1.2:-72597935 MS.gene33994:CDS
TCAGGTCATTGAGGCTTCAT+CGG 0.558495 1.2:-72600468 MS.gene33994:CDS
TCAAGCTTAACCGTGGGACA+TGG 0.558912 1.2:-72597876 MS.gene33994:CDS
GATTTCATTTGAATCAACAA+TGG 0.567401 1.2:+72598005 None:intergenic
CCGTACTCTTTGAAGGTCGC+CGG 0.569217 1.2:+72600491 None:intergenic
GACCTTCAAAGAGTACGGTC+AGG 0.570961 1.2:-72600486 MS.gene33994:CDS
GAGGCTTCATCGGACGGTGA+GGG 0.572018 1.2:-72600458 MS.gene33994:CDS
GTCCTTCTTAAAGTTGTGTG+TGG 0.574527 1.2:+72597608 None:intergenic
TACCACACACAACTTTAAGA+AGG 0.575142 1.2:-72597610 MS.gene33994:CDS
CCGGCGACCTTCAAAGAGTA+CGG 0.593053 1.2:-72600491 MS.gene33994:CDS
CACAACTTTAAGAAGGACAA+TGG 0.594981 1.2:-72597603 MS.gene33994:CDS
GAAGGGAATGGAGAGTGTGA+AGG 0.597978 1.2:-72600534 None:intergenic
CAAAGATGATTCAGGCAAGA+CGG 0.600075 1.2:-72597983 MS.gene33994:CDS
TGAGGCTTCATCGGACGGTG+AGG 0.602563 1.2:-72600459 MS.gene33994:CDS
GACCAGCATGCCATGTCCCA+CGG 0.605299 1.2:+72597866 None:intergenic
GTGATATTAGAAAACTCAAG+TGG 0.611037 1.2:+72598102 None:intergenic
CTTTAAGAAGGACAATGGAG+TGG 0.614786 1.2:-72597598 MS.gene33994:CDS
AAATTTCTCAAGCTTAACCG+TGG 0.618191 1.2:-72597883 MS.gene33994:CDS
ACTTGGACATCCTCAATGGT+AGG 0.620998 1.2:+72597925 None:intergenic
CATTACCACCAATGGACCCA+AGG 0.621913 1.2:+72598055 None:intergenic
ATTGTATCAGACTTAAATAG+AGG 0.622516 1.2:+72597844 None:intergenic
TAATGTTTGGTATCTTGGAG+CGG 0.623808 1.2:-72598037 MS.gene33994:CDS
GCTCAGCTTGACCTTAGCCA+AGG 0.638940 1.2:-72600419 MS.gene33994:CDS
AATTTCTCAAGCTTAACCGT+GGG 0.640376 1.2:-72597882 MS.gene33994:CDS
TGGACATCCTCAATGGTAGG+AGG 0.650915 1.2:+72597928 None:intergenic
AGAGTACGGTCAGGTCATTG+AGG 0.671075 1.2:-72600477 MS.gene33994:CDS
ACGGTCGTGAAGTCGCACAG+TGG 0.761158 1.2:-72597964 MS.gene33994:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTTATATTTTTTATT+GGG - chr1.2:72598814-72598833 MS.gene33994:intron 0.0%
!!! TAAAAATTTATATTTTTTAT+TGG - chr1.2:72598813-72598832 MS.gene33994:intron 0.0%
!! GTATATTTCTTAAAAAAAAA+TGG - chr1.2:72598585-72598604 MS.gene33994:intron 10.0%
!! TTAATTAAATTCAAAATGAA+TGG + chr1.2:72597793-72597812 None:intergenic 10.0%
!!! AAAGTTATTTTGATTAAAAA+AGG + chr1.2:72597955-72597974 None:intergenic 10.0%
!!! AAGTTATTTTGATTAAAAAA+GGG + chr1.2:72597954-72597973 None:intergenic 10.0%
!! AAAAACAAATAACATATGTA+TGG - chr1.2:72598367-72598386 MS.gene33994:intron 15.0%
!! AAATTAATTCCAATAAGTTA+GGG + chr1.2:72599944-72599963 None:intergenic 15.0%
!! TAACTTAAGATATTTCATAA+AGG - chr1.2:72599510-72599529 MS.gene33994:intron 15.0%
!!! ATACATATGTTATTTGTTTT+TGG + chr1.2:72598368-72598387 None:intergenic 15.0%
!!! TATTTGAAAAGAAATTTTGT+TGG + chr1.2:72597818-72597837 None:intergenic 15.0%
!!! TATTTTTTTGGTCTTTTTTA+GGG - chr1.2:72600413-72600432 MS.gene33994:CDS 15.0%
!!! TTATTTTTTTGGTCTTTTTT+AGG - chr1.2:72600412-72600431 MS.gene33994:CDS 15.0%
!!! TTTTACTCTTTTTTTTTTAG+AGG - chr1.2:72598641-72598660 MS.gene33994:intron 15.0%
!! ATATAACAAATGTGTTTGAT+TGG + chr1.2:72598513-72598532 None:intergenic 20.0%
!! ATATACCTAGTTATTTATCT+CGG + chr1.2:72599224-72599243 None:intergenic 20.0%
!! CAAATTAATTCCAATAAGTT+AGG + chr1.2:72599945-72599964 None:intergenic 20.0%
!! TAAATTAAATGACAGCTTTA+TGG + chr1.2:72597862-72597881 None:intergenic 20.0%
!! TGAAATATCTTAAGTTATGT+TGG + chr1.2:72599507-72599526 None:intergenic 20.0%
!!! CAAAATTTTCATTTGAATTG+AGG + chr1.2:72597748-72597767 None:intergenic 20.0%
!!! CTCAATTCAAATGAAAATTT+TGG - chr1.2:72597746-72597765 MS.gene33994:intron 20.0%
!!! TGTTATAGACTTTTTTTTGA+AGG - chr1.2:72598439-72598458 MS.gene33994:intron 20.0%
!!! TTGTGCTTATCTTATTTTTT+TGG - chr1.2:72600401-72600420 MS.gene33994:intron 20.0%
!!! TTTATTGTTTTATCTGATCT+TGG - chr1.2:72599743-72599762 MS.gene33994:intron 20.0%
! AATGAAATCAAAGATGATTC+AGG - chr1.2:72600114-72600133 MS.gene33994:intron 25.0%
! ACATGCATAATTATATGCAT+GGG + chr1.2:72599008-72599027 None:intergenic 25.0%
! ATAGTAATTGCAATCAACTT+TGG - chr1.2:72599697-72599716 MS.gene33994:intron 25.0%
! ATCAGCTTAATTAATTTAGC+TGG - chr1.2:72599852-72599871 MS.gene33994:intron 25.0%
! ATCTAATTAGTATGCATCAA+TGG + chr1.2:72599200-72599219 None:intergenic 25.0%
! ATCTTCACAAATAAGTTAGA+TGG - chr1.2:72598561-72598580 MS.gene33994:intron 25.0%
! ATGCTCTTTACAATAATACA+TGG - chr1.2:72600375-72600394 MS.gene33994:intron 25.0%
! ATGTATGGAATTCATGTTAT+AGG - chr1.2:72598382-72598401 MS.gene33994:intron 25.0%
! ATGTTGTTGTGATTTATGTA+TGG - chr1.2:72600444-72600463 MS.gene33994:CDS 25.0%
! ATTACATTAAACACTGTCAT+TGG + chr1.2:72599481-72599500 None:intergenic 25.0%
! ATTGCAATTACTATTGATAG+TGG + chr1.2:72599691-72599710 None:intergenic 25.0%
! ATTGTATCAGACTTAAATAG+AGG + chr1.2:72600264-72600283 None:intergenic 25.0%
! ATTTAAGTGATTCTTTGTCA+AGG - chr1.2:72597877-72597896 MS.gene33994:CDS 25.0%
! CATAATGTCAATCTAAATTG+AGG + chr1.2:72599893-72599912 None:intergenic 25.0%
! GATTTCATTTGAATCAACAA+TGG + chr1.2:72600103-72600122 None:intergenic 25.0%
! TCAGCTTAATTAATTTAGCT+GGG - chr1.2:72599853-72599872 MS.gene33994:intron 25.0%
! TCTAATTAGTATGCATCAAT+GGG + chr1.2:72599199-72599218 None:intergenic 25.0%
! TCTATTTAAGTCTGATACAA+TGG - chr1.2:72600263-72600282 MS.gene33994:intron 25.0%
! TGCTCTTTACAATAATACAT+GGG - chr1.2:72600376-72600395 MS.gene33994:intron 25.0%
! TGTATGGAATTCATGTTATA+GGG - chr1.2:72598383-72598402 MS.gene33994:intron 25.0%
!! ATGATTTTGTATTATGCCTT+TGG + chr1.2:72599617-72599636 None:intergenic 25.0%
!!! GGAATTAATTTGTGTTTGTT+AGG - chr1.2:72599953-72599972 MS.gene33994:intron 25.0%
!!! TATGGTTTTTTATTGTGTTC+AGG - chr1.2:72600462-72600481 MS.gene33994:CDS 25.0%
!!! TCAGTTTTTTATCTGCTATA+TGG - chr1.2:72597915-72597934 MS.gene33994:CDS 25.0%
!!! TTTTTCAAGGTGAATAAGTT+GGG - chr1.2:72598961-72598980 MS.gene33994:intron 25.0%
AGATACCGAGATAAATAACT+AGG - chr1.2:72599216-72599235 MS.gene33994:intron 30.0%
ATTCCAATAAGTTAGGGTAT+AGG + chr1.2:72599938-72599957 None:intergenic 30.0%
CAACTTATTCACCTTGAAAA+AGG + chr1.2:72598962-72598981 None:intergenic 30.0%
CATAATTATATGCATGGGTT+GGG + chr1.2:72599003-72599022 None:intergenic 30.0%
CATGTAACACTTTAGTGAAA+GGG + chr1.2:72600337-72600356 None:intergenic 30.0%
GACATGCATAATTATATGCA+TGG + chr1.2:72599009-72599028 None:intergenic 30.0%
GATGCAAAATATTGATCCAA+AGG - chr1.2:72599598-72599617 MS.gene33994:intron 30.0%
GTGATATTAGAAAACTCAAG+TGG + chr1.2:72600006-72600025 None:intergenic 30.0%
GTTGTTTAAATTCACAGAGA+TGG - chr1.2:72599719-72599738 MS.gene33994:intron 30.0%
TCATTTGAATCAACAATGGA+TGG + chr1.2:72600099-72600118 None:intergenic 30.0%
! ACATGTTCTTGTTATGCATA+TGG + chr1.2:72597991-72598010 None:intergenic 30.0%
! ATAATTATATGCATGGGTTG+GGG + chr1.2:72599002-72599021 None:intergenic 30.0%
!!! CTTTTTCAAGGTGAATAAGT+TGG - chr1.2:72598960-72598979 MS.gene33994:intron 30.0%
AAATTTCTCAAGCTTAACCG+TGG - chr1.2:72600222-72600241 MS.gene33994:intron 35.0%
AACCTGAAACCTTGAAAACT+TGG + chr1.2:72600200-72600219 None:intergenic 35.0%
AAGTGTAAAGCTTGAATCTG+TGG - chr1.2:72599651-72599670 MS.gene33994:intron 35.0%
AATGCAAGTTACAGAAATCC+AGG + chr1.2:72598134-72598153 None:intergenic 35.0%
AATTTCTCAAGCTTAACCGT+GGG - chr1.2:72600223-72600242 MS.gene33994:intron 35.0%
ACGGTTAAGCTTGAGAAATT+TGG + chr1.2:72600223-72600242 None:intergenic 35.0%
AGAAGTGAAGAATGAAAACC+TGG + chr1.2:72597717-72597736 None:intergenic 35.0%
AGGTGCAAAACAAAAATACC+AGG + chr1.2:72598188-72598207 None:intergenic 35.0%
ATAAAAAACTGAGTGCTTCC+AGG + chr1.2:72597907-72597926 None:intergenic 35.0%
ATACCAAACATTACCACCAA+TGG + chr1.2:72600061-72600080 None:intergenic 35.0%
ATGCAAGTTACAGAAATCCA+GGG + chr1.2:72598133-72598152 None:intergenic 35.0%
CAACCTATACCCTAACTTAT+TGG - chr1.2:72599932-72599951 MS.gene33994:intron 35.0%
CAATAAGTTAGGGTATAGGT+TGG + chr1.2:72599934-72599953 None:intergenic 35.0%
GAAGTGAAGAATGAAAACCT+GGG + chr1.2:72597716-72597735 None:intergenic 35.0%
GCATAATTATATGCATGGGT+TGG + chr1.2:72599004-72599023 None:intergenic 35.0%
GCATGTAACACTTTAGTGAA+AGG + chr1.2:72600338-72600357 None:intergenic 35.0%
TAACACTTTAGTGAAAGGGA+GGG + chr1.2:72600333-72600352 None:intergenic 35.0%
TAATGTTTGGTATCTTGGAG+CGG - chr1.2:72600068-72600087 MS.gene33994:intron 35.0%
TCTTGTCGCATCATTTAATG+TGG + chr1.2:72599139-72599158 None:intergenic 35.0%
! CACAACTTTAAGAAGGACAA+TGG - chr1.2:72600502-72600521 MS.gene33994:CDS 35.0%
! GGATTAATCGATTCTTGGAT+TGG - chr1.2:72599426-72599445 MS.gene33994:intron 35.0%
! TACCACACACAACTTTAAGA+AGG - chr1.2:72600495-72600514 MS.gene33994:CDS 35.0%
! TCTTGTTATGCATATGGCAT+TGG + chr1.2:72597985-72598004 None:intergenic 35.0%
! TTTTTATTGTGTTCAGGTGG+TGG - chr1.2:72600468-72600487 MS.gene33994:CDS 35.0%
!! AGAGCATTGCAAATGAATTC+AGG + chr1.2:72600362-72600381 None:intergenic 35.0%
!! GCTAGAATTCACCTTTTTCA+AGG - chr1.2:72598948-72598967 MS.gene33994:intron 35.0%
!!! GGTTTTTTATTGTGTTCAGG+TGG - chr1.2:72600465-72600484 MS.gene33994:CDS 35.0%
!!! TGGTCTTTTTTAGGGTTTAG+TGG - chr1.2:72600421-72600440 MS.gene33994:CDS 35.0%
!!! TTTTTTGTCAAGTTGCCTAG+TGG - chr1.2:72598926-72598945 MS.gene33994:intron 35.0%
AAAGGTGAATTCTAGCCACT+AGG + chr1.2:72598944-72598963 None:intergenic 40.0%
AATGTGTTTGATTGGTGCAG+TGG + chr1.2:72598505-72598524 None:intergenic 40.0%
ATGAAAACCTGGGAATTCCT+TGG + chr1.2:72597706-72597725 None:intergenic 40.0%
CAAAGATGATTCAGGCAAGA+CGG - chr1.2:72600122-72600141 MS.gene33994:intron 40.0%
CCAAGAATCGATTAATCCGA+GGG + chr1.2:72599424-72599443 None:intergenic 40.0%
GAAAACTTGGACATCCTCAA+TGG + chr1.2:72600187-72600206 None:intergenic 40.0%
GAATTCATGTTATAGGGCTG+CGG - chr1.2:72598389-72598408 MS.gene33994:intron 40.0%
GTAACACTTTAGTGAAAGGG+AGG + chr1.2:72600334-72600353 None:intergenic 40.0%
GTCCTTCTTAAAGTTGTGTG+TGG + chr1.2:72600500-72600519 None:intergenic 40.0%
GTCGTAATTTCTCGCTGTTT+CGG - chr1.2:72599768-72599787 MS.gene33994:intron 40.0%
TCCAAGAATCGATTAATCCG+AGG + chr1.2:72599425-72599444 None:intergenic 40.0%
TGGAGATCAGTGAGACTATT+TGG + chr1.2:72597773-72597792 None:intergenic 40.0%
TTATCTACCTCCTACCATTG+AGG - chr1.2:72600170-72600189 MS.gene33994:intron 40.0%
TTCTTTGACCAAACCCATCT+CGG - chr1.2:72598032-72598051 MS.gene33994:CDS 40.0%
! AATGACAGCTTTATGGCGAT+AGG + chr1.2:72597855-72597874 None:intergenic 40.0%
! ATGACAGCTTTATGGCGATA+GGG + chr1.2:72597854-72597873 None:intergenic 40.0%
! CTTTAAGAAGGACAATGGAG+TGG - chr1.2:72600507-72600526 MS.gene33994:CDS 40.0%
! GGTGGTAATGTTTGGTATCT+TGG - chr1.2:72600063-72600082 MS.gene33994:intron 40.0%
! TCACACAGCTCTGTATTGAT+TGG - chr1.2:72598222-72598241 MS.gene33994:intron 40.0%
! TGAGGATGTCCAAGTTTTCA+AGG - chr1.2:72600188-72600207 MS.gene33994:intron 40.0%
!! GTCCAAGTTTTCAAGGTTTC+AGG - chr1.2:72600195-72600214 MS.gene33994:intron 40.0%
ACCAACTGAGCTATGCTCAT+GGG - chr1.2:72599032-72599051 MS.gene33994:intron 45.0%
ACTTGGACATCCTCAATGGT+AGG + chr1.2:72600183-72600202 None:intergenic 45.0%
ATGAGCATAGCTCAGTTGGT+AGG + chr1.2:72599032-72599051 None:intergenic 45.0%
CCACTAAAATTGCCACCAAG+GGG + chr1.2:72599349-72599368 None:intergenic 45.0%
CCCACTAAAATTGCCACCAA+GGG + chr1.2:72599350-72599369 None:intergenic 45.0%
CTAAGTCCACACAGAGCAAT+GGG - chr1.2:72599370-72599389 MS.gene33994:intron 45.0%
GTGTGAATTAGTCAGACAGC+AGG + chr1.2:72598208-72598227 None:intergenic 45.0%
TAAGTCCACACAGAGCAATG+GGG - chr1.2:72599371-72599390 MS.gene33994:intron 45.0%
TACCAACTGAGCTATGCTCA+TGG - chr1.2:72599031-72599050 MS.gene33994:intron 45.0%
TCAGGTCATTGAGGCTTCAT+CGG - chr1.2:72597637-72597656 MS.gene33994:intron 45.0%
TCTTTGACCAAACCCATCTC+GGG - chr1.2:72598033-72598052 MS.gene33994:CDS 45.0%
! AGGTGAATAAGTTGGGTGTC+TGG - chr1.2:72598968-72598987 MS.gene33994:intron 45.0%
! ATTCTTTGTCAAGGTGCTCC+TGG - chr1.2:72597886-72597905 MS.gene33994:CDS 45.0%
! CCCTCGGATTAATCGATTCT+TGG - chr1.2:72599421-72599440 MS.gene33994:intron 45.0%
! GGTCCATTGGTGGTAATGTT+TGG - chr1.2:72600055-72600074 MS.gene33994:intron 45.0%
! GGTGAATAAGTTGGGTGTCT+GGG - chr1.2:72598969-72598988 MS.gene33994:intron 45.0%
! GTGAATAAGTTGGGTGTCTG+GGG - chr1.2:72598970-72598989 MS.gene33994:intron 45.0%
! TGAGCATAGCTCAGTTGGTA+GGG + chr1.2:72599031-72599050 None:intergenic 45.0%
! TTCATTGCTACTTGCACACC+TGG - chr1.2:72598167-72598186 MS.gene33994:intron 45.0%
!! CAGCTCTGTATTGATTGGTG+CGG - chr1.2:72598227-72598246 MS.gene33994:intron 45.0%
!! CCCTTGGTGGCAATTTTAGT+GGG - chr1.2:72599347-72599366 MS.gene33994:intron 45.0%
!! TATTTATTTATTTAGTTATT+TGG - chr1.2:72598317-72598336 MS.gene33994:intron 5.0%
AAATTTGCACCCCCTGATCC+AGG - chr1.2:72599275-72599294 MS.gene33994:intron 50.0%
AATTTGCACCCCCTGATCCA+GGG - chr1.2:72599276-72599295 MS.gene33994:intron 50.0%
ACCTGGGAATTCCTTGGCTA+AGG + chr1.2:72597700-72597719 None:intergenic 50.0%
ACCTTAGCCAAGGAATTCCC+AGG - chr1.2:72597696-72597715 MS.gene33994:intron 50.0%
AGAGTACGGTCAGGTCATTG+AGG - chr1.2:72597628-72597647 MS.gene33994:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG + chr1.2:72599320-72599339 None:intergenic 50.0%
CAAGTGTGACTCAGTGCCTT+GGG - chr1.2:72600034-72600053 MS.gene33994:intron 50.0%
CATTACCACCAATGGACCCA+AGG + chr1.2:72600053-72600072 None:intergenic 50.0%
CCAACTGAGCTATGCTCATG+GGG - chr1.2:72599033-72599052 MS.gene33994:intron 50.0%
GAAGGCAATTGAAGCAGCTC+CGG - chr1.2:72597595-72597614 MS.gene33994:CDS 50.0%
GACCTGACCGTACTCTTTGA+AGG + chr1.2:72597624-72597643 None:intergenic 50.0%
GCCCACTAAAATTGCCACCA+AGG + chr1.2:72599351-72599370 None:intergenic 50.0%
GCTAAGTCCACACAGAGCAA+TGG - chr1.2:72599369-72599388 MS.gene33994:intron 50.0%
GTCATTGAGGCTTCATCGGA+CGG - chr1.2:72597641-72597660 MS.gene33994:intron 50.0%
TCAAGCTTAACCGTGGGACA+TGG - chr1.2:72600229-72600248 MS.gene33994:intron 50.0%
TGGACATCCTCAATGGTAGG+AGG + chr1.2:72600180-72600199 None:intergenic 50.0%
! AGGTCAAGCTGAGCATCGTT+TGG + chr1.2:72597680-72597699 None:intergenic 50.0%
! AGGTTCGATTCGATTCCCCT+TGG - chr1.2:72599331-72599350 MS.gene33994:intron 50.0%
! ATCTGAAGCCAACCCGAGAT+GGG + chr1.2:72598048-72598067 None:intergenic 50.0%
! GACCTTCAAAGAGTACGGTC+AGG - chr1.2:72597619-72597638 MS.gene33994:CDS 50.0%
! TTCGATTCGATTCCCCTTGG+TGG - chr1.2:72599334-72599353 MS.gene33994:intron 50.0%
!! CCCCTTGGTGGCAATTTTAG+TGG - chr1.2:72599346-72599365 MS.gene33994:intron 50.0%
!! GGTATAGGTTGGTGACTTGC+AGG + chr1.2:72599923-72599942 None:intergenic 50.0%
ACTCAGTGCCTTGGGTCCAT+TGG - chr1.2:72600042-72600061 MS.gene33994:intron 55.0%
AGACCTTGAGAGGACAGTGG+CGG + chr1.2:72599310-72599329 None:intergenic 55.0%
ATCCAAGACCCTGGATCAGG+GGG + chr1.2:72599287-72599306 None:intergenic 55.0%
CACTGTCCTCTCAAGGTCTC+AGG - chr1.2:72599311-72599330 MS.gene33994:intron 55.0%
CCCCATGAGCATAGCTCAGT+TGG + chr1.2:72599036-72599055 None:intergenic 55.0%
CCGGCGACCTTCAAAGAGTA+CGG - chr1.2:72597614-72597633 MS.gene33994:CDS 55.0%
CTGAGACCTTGAGAGGACAG+TGG + chr1.2:72599313-72599332 None:intergenic 55.0%
GATCCAAGACCCTGGATCAG+GGG + chr1.2:72599288-72599307 None:intergenic 55.0%
GCAAGTGTGACTCAGTGCCT+TGG - chr1.2:72600033-72600052 MS.gene33994:intron 55.0%
GCTCAGCTTGACCTTAGCCA+AGG - chr1.2:72597686-72597705 MS.gene33994:intron 55.0%
GGATCCAAGACCCTGGATCA+GGG + chr1.2:72599289-72599308 None:intergenic 55.0%
TCATCGGACGGTGAGGGATT+TGG - chr1.2:72597653-72597672 MS.gene33994:intron 55.0%
TGACCAAACCCATCTCGGGT+TGG - chr1.2:72598037-72598056 MS.gene33994:CDS 55.0%
TGGAGTGTGCTCCTCTCACA+GGG - chr1.2:72598070-72598089 MS.gene33994:CDS 55.0%
TTGGAGTGTGCTCCTCTCAC+AGG - chr1.2:72598069-72598088 MS.gene33994:CDS 55.0%
! AAGCCAACCCGAGATGGGTT+TGG + chr1.2:72598043-72598062 None:intergenic 55.0%
! CCGTACTCTTTGAAGGTCGC+CGG + chr1.2:72597617-72597636 None:intergenic 55.0%
! GATCTGAAGCCAACCCGAGA+TGG + chr1.2:72598049-72598068 None:intergenic 55.0%
!! CTCGGGTTGGCTTCAGATCT+TGG - chr1.2:72598050-72598069 MS.gene33994:CDS 55.0%
!! GCGGAGCTAGGTAGCTTTGA+GGG - chr1.2:72598093-72598112 MS.gene33994:CDS 55.0%
AACCGTGGGACATGGCATGC+TGG - chr1.2:72600237-72600256 MS.gene33994:intron 60.0%
AATTCCACCGCCCACTTGCG+GGG + chr1.2:72599397-72599416 None:intergenic 60.0%
ACGGTCGTGAAGTCGCACAG+TGG - chr1.2:72600141-72600160 MS.gene33994:intron 60.0%
CAATTCCACCGCCCACTTGC+GGG + chr1.2:72599398-72599417 None:intergenic 60.0%
CAGTGCCTTGGGTCCATTGG+TGG - chr1.2:72600045-72600064 MS.gene33994:intron 60.0%
CCAATTCCACCGCCCACTTG+CGG + chr1.2:72599399-72599418 None:intergenic 60.0%
CGGATCCAAGACCCTGGATC+AGG + chr1.2:72599290-72599309 None:intergenic 60.0%
GACCAGCATGCCATGTCCCA+CGG + chr1.2:72600242-72600261 None:intergenic 60.0%
GAGGCTTCATCGGACGGTGA+GGG - chr1.2:72597647-72597666 MS.gene33994:intron 60.0%
GATCCGCCACTGTCCTCTCA+AGG - chr1.2:72599304-72599323 MS.gene33994:intron 60.0%
GGAGTGTGCTCCTCTCACAG+GGG - chr1.2:72598071-72598090 MS.gene33994:CDS 60.0%
TGAGGCTTCATCGGACGGTG+AGG - chr1.2:72597646-72597665 MS.gene33994:intron 60.0%
! GGCGGAGCTAGGTAGCTTTG+AGG - chr1.2:72598092-72598111 MS.gene33994:CDS 60.0%
! GGCGGTGGAATTGGTTCCCT+CGG - chr1.2:72599405-72599424 MS.gene33994:intron 60.0%
AGCAATGGGGCCCCGCAAGT+GGG - chr1.2:72599384-72599403 MS.gene33994:intron 65.0%
CACCCCCTGATCCAGGGTCT+TGG - chr1.2:72599282-72599301 MS.gene33994:intron 65.0%
CCGCAAGTGGGCGGTGGAAT+TGG - chr1.2:72599396-72599415 MS.gene33994:intron 65.0%
GTGTGCTCCTCTCACAGGGG+CGG - chr1.2:72598074-72598093 MS.gene33994:CDS 65.0%
!! CAGTGGCGGATCCAAGACCC+TGG + chr1.2:72599296-72599315 None:intergenic 65.0%
AATGGGGCCCCGCAAGTGGG+CGG - chr1.2:72599387-72599406 MS.gene33994:intron 70.0%
CCTAGCTCCGCCCCTGTGAG+AGG + chr1.2:72598084-72598103 None:intergenic 70.0%
CCTCTCACAGGGGCGGAGCT+AGG - chr1.2:72598081-72598100 MS.gene33994:CDS 70.0%
CGGGGCCCCATTGCTCTGTG+TGG + chr1.2:72599379-72599398 None:intergenic 70.0%
GAGCAATGGGGCCCCGCAAG+TGG - chr1.2:72599383-72599402 MS.gene33994:intron 70.0%
GGGTGTGCACGTGCACACCC+TGG - chr1.2:72598113-72598132 MS.gene33994:CDS 70.0%
! GGGGCCCCGCAAGTGGGCGG+TGG - chr1.2:72599390-72599409 MS.gene33994:intron 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72597578 72600549 72597578 ID=MS.gene33994
chr1.2 mRNA 72597578 72600549 72597578 ID=MS.gene33994.t1;Parent=MS.gene33994
chr1.2 exon 72600410 72600549 72600410 ID=MS.gene33994.t1.exon1;Parent=MS.gene33994.t1
chr1.2 CDS 72600410 72600549 72600410 ID=cds.MS.gene33994.t1;Parent=MS.gene33994.t1
chr1.2 exon 72597810 72598152 72597810 ID=MS.gene33994.t1.exon2;Parent=MS.gene33994.t1
chr1.2 CDS 72597810 72598152 72597810 ID=cds.MS.gene33994.t1;Parent=MS.gene33994.t1
chr1.2 exon 72597578 72597643 72597578 ID=MS.gene33994.t1.exon3;Parent=MS.gene33994.t1
chr1.2 CDS 72597578 72597643 72597578 ID=cds.MS.gene33994.t1;Parent=MS.gene33994.t1
Gene Sequence

>MS.gene33994

ATGGAGAGTGTGAAGGTGAAGGCAATTGAAGCAGCTCCGGCGACCTTCAAAGAGTACGGTCAGGTCATTGAGGCTTCATCGGACGGTGAGGGATTTGGTCCAAACGATGCTCAGCTTGACCTTAGCCAAGGAATTCCCAGGTTTTCATTCTTCACTTCTTGTTAATTCCTCAATTCAAATGAAAATTTTGGTCCAAATAGTCTCACTGATCTCCATTCATTTTGAATTTAATTAATACCAACAAAATTTCTTTTCAAATATTTTTAGAATAGTCCCTATCGCCATAAAGCTGTCATTTAATTTAAGTGATTCTTTGTCAAGGTGCTCCTGGAAGCACTCAGTTTTTTATCTGCTATATGGTTCAGTAGTTGCTCCCTTTTTTAATCAAAATAACTTTAAAAAGTCCAATGCCATATGCATAACAAGAACATGTAGCGAAACACGATTCAAACTATTCTTTGACCAAACCCATCTCGGGTTGGCTTCAGATCTTGGAGTGTGCTCCTCTCACAGGGGCGGAGCTAGGTAGCTTTGAGGGTGTGCACGTGCACACCCTGGATTTCTGTAACTTGCATTAGTTTTTTCTACTTTCATTGCTACTTGCACACCTGGTATTTTTGTTTTGCACCTGCTGTCTGACTAATTCACACAGCTCTGTATTGATTGGTGCGGTGCATGCATACTGACGCAGCTCTACAAATGTTTTGACTTTCAAAGTGTTACTATTATTTTATTTATTTATTTATTTATTTAGTTATTTGGAAGATTTTTATCAATTAAGTAAAAGCCAAAAACAAATAACATATGTATGGAATTCATGTTATAGGGCTGCGGACTGCATCTACAATTATCATACATTCATGTTATAGACTTTTTTTTGAAGGACATTCATGTTATAGACTTACTGCATTTATAATTAATTATCCACTGCACCAATCAAACACATTTGTTATATCTTCGCAAATAATTTTTTTTTTTAGAAAATCTTCACAAATAAGTTAGATGGTGTATATTTCTTAAAAAAAAATGGTTAGATGATGTATATTATTCAAAACAAAAATCTTTTTACTCTTTTTTTTTTAGAGGAATCATTTCACTCTCTATTCTTTAGTTCTACTTTTTATTCTTTTTCTTATAATAAAAGATATTACTCTTTTGAATTCATAGCAGTAAATAGTTGAATTTACAATTTGTCAAAAGTAATAAAATTTAATATGATTATTTACTAAAAAGAATAAAAATTTATATTTTTTATTGGGTAAAAGTAACACAAATGTAAATTTAGTAGTTTAATTTAATATGAAAAAGAGTTTAATTTATATGCACTGACTCTAAAGTTTTTTTTTTTTTTTTTGTCAAGTTGCCTAGTGGCTAGAATTCACCTTTTTCAAGGTGAATAAGTTGGGTGTCTGGGGTTCGAACCCCAACCCATGCATATAATTATGCATGTCCCTACCAACTGAGCTATGCTCATGGGGACGACTTTAAAGTTATTTTACACATGCATTCAATGATGTATTTTTATATCAATTAATAAATATACAATATATGTTTTCGACCACATTAAATGATGCGACAAGACATTATTAAACGCATGTGTGAAATAAGTTTACAATGTCCCATTGATGCATACTAATTAGATACCGAGATAAATAACTAGGTATATATATTAAAATTTATAACATTAATAAGTTAAAAAATTTGCACCCCCTGATCCAGGGTCTTGGATCCGCCACTGTCCTCTCAAGGTCTCAGGTTCGATTCGATTCCCCTTGGTGGCAATTTTAGTGGGCTAAGTCCACACAGAGCAATGGGGCCCCGCAAGTGGGCGGTGGAATTGGTTCCCTCGGATTAATCGATTCTTGGATTGGATGCTGAGTTTTAAAAAAAAAATCTTTGACCAATGACAGTGTTTAATGTAATTAACCAACATAACTTAAGATATTTCATAAAGGCTTCAATGAAGATTTGTGAAAATACAGCTTATATTATCTATGTAGTCACTAATCACAATATTACTGATGCAAAATATTGATCCAAAGGCATAATACAAAATCATCGTAAATTATTGTAAAGTGTAAAGCTTGAATCTGTGGTCAAATTTACAATGCCACTATCAATAGTAATTGCAATCAACTTTGGTTGTTTAAATTCACAGAGATGGATTTATTGTTTTATCTGATCTTGGTTGTCGTAATTTCTCGCTGTTTCGGCTGTATAACTGTATTTATCTTGACATAAAGTGCTCAAAATCTGTTTCACTATACATGTTACATCAGCTTAATTAATTTAGCTGGGATAGTTATTAGCTTCCTCAATTTAGATTGACATTATGCTGCAAGCCTGCAAGTCACCAACCTATACCCTAACTTATTGGAATTAATTTGTGTTTGTTAGGTTCTACATTATGCATCTTGAAAATCGTCCACTTGAGTTTTCTAATATCACACATCATGCAAGTGTGACTCAGTGCCTTGGGTCCATTGGTGGTAATGTTTGGTATCTTGGAGCGGCTAAGCCATCCATTGTTGATTCAAATGAAATCAAAGATGATTCAGGCAAGACGGTCGTGAAGTCGCACAGTGGTCATTATTATCTACCTCCTACCATTGAGGATGTCCAAGTTTTCAAGGTTTCAGGTTCCAAATTTCTCAAGCTTAACCGTGGGACATGGCATGCTGGTCCTCTATTTAAGTCTGATACAATGGACTTTTACAATCTAGAACTGAGCAATACAAATGTAAGATTTTCACCCTCCCTTTCACTAAAGTGTTACATGCACCTGAATTCATTTGCAATGCTCTTTACAATAATACATGGGAATTGTGCTTATCTTATTTTTTTGGTCTTTTTTAGGGTTTAGTGGATGTTGTTGTGATTTATGTATGGTTTTTTATTGTGTTCAGGTGGTGGATCATACCACACACAACTTTAAGAAGGACAATGGAGTGGTTTTTTCGATTGTTGAGTAA
Protein sequence

>MS.gene33994.t1

MESVKVKAIEAAPATFKEYGQVIEASSDGEGFGPNDAQLDLSQGIPRFYIMHLENRPLEFSNITHHASVTQCLGSIGGNVWYLGAAKPSIVDSNEIKDDSGKTVVKSHSGHYYLPPTIEDVQVFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNVVDHTTHNFKKDNGVVFSIVE