Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011220.t1 | XP_013444380.1 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.60E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011220.t1 | Q8H1F4 | 74.7 | 178 | 45 | 0 | 3 | 180 | 4 | 181 | 8.8e-69 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011220.t1 | Q5QQ32 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.3e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011220 | MS.gene056700 | PPI |
| MS.gene043279 | MS.gene011220 | PPI |
| MS.gene07800 | MS.gene011220 | PPI |
| MS.gene011220 | MS.gene45686 | PPI |
| MS.gene011220 | MS.gene68223 | PPI |
| MS.gene011220 | MS.gene003223 | PPI |
| MS.gene011220 | MS.gene043279 | PPI |
| MS.gene011220 | MS.gene79635 | PPI |
| MS.gene003764 | MS.gene011220 | PPI |
| MS.gene74608 | MS.gene011220 | PPI |
| MS.gene064893 | MS.gene011220 | PPI |
| MS.gene011220 | MS.gene02789 | PPI |
| MS.gene011220 | MS.gene02023 | PPI |
| MS.gene30333 | MS.gene011220 | PPI |
| MS.gene011220 | MS.gene021666 | PPI |
| MS.gene063166 | MS.gene011220 | PPI |
| MS.gene011220 | MS.gene37394 | PPI |
| MS.gene74768 | MS.gene011220 | PPI |
| MS.gene014282 | MS.gene011220 | PPI |
| MS.gene011220 | MS.gene50077 | PPI |
| MS.gene79635 | MS.gene011220 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011220.t1 | MTR_8g017630 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.38e-131 | 365 |
| MS.gene011220.t1 | MTR_0350s0010 | 95.930 | 172 | 6 | 1 | 10 | 180 | 49 | 220 | 1.39e-117 | 332 |
| MS.gene011220.t1 | MTR_2g028750 | 75.862 | 174 | 42 | 0 | 6 | 179 | 31 | 204 | 9.70e-93 | 268 |
| MS.gene011220.t1 | MTR_7g009640 | 85.075 | 134 | 20 | 0 | 10 | 143 | 2 | 135 | 7.49e-81 | 236 |
| MS.gene011220.t1 | MTR_8g018030 | 87.302 | 63 | 8 | 0 | 3 | 65 | 4 | 66 | 3.21e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011220.t1 | AT4G08520 | 74.302 | 179 | 46 | 0 | 2 | 180 | 3 | 181 | 3.54e-96 | 276 |
| MS.gene011220.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene011220.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene011220.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene011220.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 86 | 259 | 3.42e-93 | 272 |
| MS.gene011220.t1 | AT1G60970 | 74.138 | 174 | 45 | 0 | 6 | 179 | 3 | 176 | 1.88e-92 | 267 |
| MS.gene011220.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
| MS.gene011220.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
Find 26 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATCAGCATCCATGTTA+TGG | 0.360054 | 8.2:+76216307 | None:intergenic |
| TGCCTTGACGAGATCGTTGA+TGG | 0.379967 | 8.2:-76216463 | MS.gene011220:CDS |
| GCCATAAATACCTAAGCAAA+AGG | 0.399888 | 8.2:+76216607 | None:intergenic |
| AGGATTATACTTGAAACAAA+TGG | 0.413540 | 8.2:-76216357 | MS.gene011220:CDS |
| AAACATTACCTGCTCTGATA+AGG | 0.429223 | 8.2:+76216284 | None:intergenic |
| GCTAACTTTGAACTGTTTGT+CGG | 0.435629 | 8.2:+76217739 | None:intergenic |
| AACATTACCTGCTCTGATAA+GGG | 0.439938 | 8.2:+76216285 | None:intergenic |
| AGCATCAGCATCCATGTTAT+GGG | 0.455423 | 8.2:+76216308 | None:intergenic |
| AAGTGAGGCACTTGAGAACT+TGG | 0.464349 | 8.2:-76216500 | MS.gene011220:CDS |
| AGTTCTTGTGAAAGTGTCTC+TGG | 0.483853 | 8.2:+76216121 | None:intergenic |
| GACTTGCATTTCTTTGTCAC+CGG | 0.485386 | 8.2:-76216693 | MS.gene011220:CDS |
| AAGACAAATGCGCGGACAGA+AGG | 0.541218 | 8.2:-76217685 | MS.gene011220:intron |
| TGCAGACACTAACTCAGGCA+TGG | 0.549441 | 8.2:-76216151 | MS.gene011220:intron |
| TGATGCTCCCTTATCAGAGC+AGG | 0.557847 | 8.2:-76216292 | MS.gene011220:intron |
| AAAAGTTACCTCCCATAACA+TGG | 0.559199 | 8.2:-76216319 | MS.gene011220:CDS |
| CCATAAATACCTAAGCAAAA+GGG | 0.568954 | 8.2:+76216608 | None:intergenic |
| TCAAGTATTACTCAGATGAC+TGG | 0.569025 | 8.2:-76217762 | MS.gene011220:CDS |
| TTGCATTTCTTTGTCACCGG+TGG | 0.580685 | 8.2:-76216690 | MS.gene011220:CDS |
| GCAGACACTAACTCAGGCAT+GGG | 0.586167 | 8.2:-76216150 | MS.gene011220:intron |
| GATATTGCAGACACTAACTC+AGG | 0.599164 | 8.2:-76216156 | MS.gene011220:intron |
| CTCCATCAACGATCTCGTCA+AGG | 0.600844 | 8.2:+76216461 | None:intergenic |
| CTTGACGAGATCGTTGATGG+AGG | 0.615640 | 8.2:-76216460 | MS.gene011220:CDS |
| TTGACGAGATCGTTGATGGA+GGG | 0.639948 | 8.2:-76216459 | MS.gene011220:intron |
| ATCAGCATCCATGTTATGGG+AGG | 0.659855 | 8.2:+76216311 | None:intergenic |
| GAGCAATGTTGACAAAAGTG+AGG | 0.698747 | 8.2:-76216515 | MS.gene011220:CDS |
| AGACTGTTAAGACAAATGCG+CGG | 0.799828 | 8.2:-76217693 | MS.gene011220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAATAAATAAACTTTCA+TGG | + | chr8.2:76218790-76218809 | None:intergenic | 15.0% |
| !! | TATTATTATATTATGCAGTT+TGG | - | chr8.2:76217667-76217686 | MS.gene011220:intron | 15.0% |
| !!! | TAAAAGAAGAATGTTTTTTA+TGG | + | chr8.2:76217382-76217401 | None:intergenic | 15.0% |
| !!! | TTTTTGATACATTCAAATAA+AGG | + | chr8.2:76218098-76218117 | None:intergenic | 15.0% |
| !! | AATTAATAGACTTCATATCA+TGG | + | chr8.2:76217557-76217576 | None:intergenic | 20.0% |
| !! | ATCCTAAAATATGATTCATA+TGG | + | chr8.2:76216410-76216429 | None:intergenic | 20.0% |
| !! | ATTTCATCCAAGATATAAAA+TGG | + | chr8.2:76217836-76217855 | None:intergenic | 20.0% |
| !! | CAGTTAATATAAATCACATA+GGG | + | chr8.2:76218162-76218181 | None:intergenic | 20.0% |
| !! | TCAGTTAATATAAATCACAT+AGG | + | chr8.2:76218163-76218182 | None:intergenic | 20.0% |
| !!! | AACCATATGAATCATATTTT+AGG | - | chr8.2:76216405-76216424 | MS.gene011220:intron | 20.0% |
| !!! | AGTTTATTTTTTGTGTTTGT+TGG | - | chr8.2:76216444-76216463 | MS.gene011220:intron | 20.0% |
| !!! | ATGAATCATATTTTAGGATT+TGG | - | chr8.2:76216411-76216430 | MS.gene011220:intron | 20.0% |
| !!! | TGAATCATATTTTAGGATTT+GGG | - | chr8.2:76216412-76216431 | MS.gene011220:intron | 20.0% |
| !!! | TTCATAACCATTTTATATCT+TGG | - | chr8.2:76217826-76217845 | MS.gene011220:CDS | 20.0% |
| ! | AAAACAAAATGCAAGCAAAA+TGG | + | chr8.2:76217237-76217256 | None:intergenic | 25.0% |
| ! | AAACAAAATGCAAGCAAAAT+GGG | + | chr8.2:76217236-76217255 | None:intergenic | 25.0% |
| ! | AAACTAAAATCTGATGGTTA+GGG | - | chr8.2:76216673-76216692 | MS.gene011220:CDS | 25.0% |
| ! | AATAAAACAACAGATACCAA+TGG | + | chr8.2:76218352-76218371 | None:intergenic | 25.0% |
| ! | AGGATTATACTTGAAACAAA+TGG | - | chr8.2:76218832-76218851 | MS.gene011220:intron | 25.0% |
| ! | ATTCTAATCAATTTAGGAAC+TGG | - | chr8.2:76216276-76216295 | MS.gene011220:intron | 25.0% |
| ! | CTGTAACTTAAATAGTGTAT+TGG | + | chr8.2:76216829-76216848 | None:intergenic | 25.0% |
| ! | GAGCTTATTCTAATCAATTT+AGG | - | chr8.2:76216270-76216289 | MS.gene011220:intron | 25.0% |
| ! | GTGAAAGTAAATAGAACTAT+TGG | + | chr8.2:76217731-76217750 | None:intergenic | 25.0% |
| ! | TCAACTGTTTACATATATAC+CGG | + | chr8.2:76217895-76217914 | None:intergenic | 25.0% |
| ! | TGCATCACAATTTAAGAAAT+AGG | - | chr8.2:76217958-76217977 | MS.gene011220:intron | 25.0% |
| ! | TTATATTATGCAGTTTGGTT+TGG | - | chr8.2:76217672-76217691 | MS.gene011220:intron | 25.0% |
| ! | TTCATGGAAAAGAAAATATG+TGG | + | chr8.2:76218774-76218793 | None:intergenic | 25.0% |
| ! | TTCTAATCAATTTAGGAACT+GGG | - | chr8.2:76216277-76216296 | MS.gene011220:intron | 25.0% |
| ! | TTTACTGATAGAAACTAAAC+TGG | + | chr8.2:76218940-76218959 | None:intergenic | 25.0% |
| ! | TTTCAACTAATACACTTGAA+AGG | + | chr8.2:76218057-76218076 | None:intergenic | 25.0% |
| ! | TTTCCGAATTAAAATCAGAT+GGG | - | chr8.2:76218622-76218641 | MS.gene011220:intron | 25.0% |
| !! | TTTTCCGAATTAAAATCAGA+TGG | - | chr8.2:76218621-76218640 | MS.gene011220:intron | 25.0% |
| !!! | ACAGGGATAAATGTTTTAAA+CGG | + | chr8.2:76216560-76216579 | None:intergenic | 25.0% |
| !!! | ACTGATTTTTAACTTGTGAA+TGG | - | chr8.2:76218231-76218250 | MS.gene011220:intron | 25.0% |
| !!! | AGAAGAATGTTTTTTATGGA+AGG | + | chr8.2:76217378-76217397 | None:intergenic | 25.0% |
| !!! | ATACCCATCTGATTTTAATT+CGG | + | chr8.2:76218628-76218647 | None:intergenic | 25.0% |
| !!! | CTTTTATTTGTTTCCCTTTT+GGG | - | chr8.2:76218290-76218309 | MS.gene011220:intron | 25.0% |
| !!! | GCTTTGTTATAGCAAATTTT+TGG | - | chr8.2:76216596-76216615 | MS.gene011220:intron | 25.0% |
| !!! | GTTTTGCAAATTTGAAATCA+CGG | - | chr8.2:76217268-76217287 | MS.gene011220:intron | 25.0% |
| !!! | TATTTTTTGTGTTTGTTGGT+TGG | - | chr8.2:76216448-76216467 | MS.gene011220:intron | 25.0% |
| !!! | TCATTTTATCATTTAGCTCA+AGG | + | chr8.2:76217800-76217819 | None:intergenic | 25.0% |
| !!! | TCTTTTATTTGTTTCCCTTT+TGG | - | chr8.2:76218289-76218308 | MS.gene011220:intron | 25.0% |
| !!! | TTTTGCAAATTTGAAATCAC+GGG | - | chr8.2:76217269-76217288 | MS.gene011220:intron | 25.0% |
| AAAACACTCTTCAATACCAT+TGG | - | chr8.2:76218333-76218352 | MS.gene011220:intron | 30.0% | |
| AAAAGTCAATGTCAGATTGA+AGG | + | chr8.2:76219012-76219031 | None:intergenic | 30.0% | |
| AAAGATAGAGAAGCTTACAT+TGG | + | chr8.2:76216119-76216138 | None:intergenic | 30.0% | |
| AACTGATTGAAATGTTCACA+AGG | - | chr8.2:76218177-76218196 | MS.gene011220:intron | 30.0% | |
| AATCCTTCAAGCAAAAAATG+AGG | + | chr8.2:76218818-76218837 | None:intergenic | 30.0% | |
| ACAAAATGAAATACCAGTAG+AGG | + | chr8.2:76218138-76218157 | None:intergenic | 30.0% | |
| ACTTGAAAGGATGTTTGATT+AGG | + | chr8.2:76218044-76218063 | None:intergenic | 30.0% | |
| CAAAATGAAATACCAGTAGA+GGG | + | chr8.2:76218137-76218156 | None:intergenic | 30.0% | |
| CACAATTTAAGAAATAGGCT+CGG | - | chr8.2:76217963-76217982 | MS.gene011220:intron | 30.0% | |
| CATAACAAACAATCACTACA+GGG | + | chr8.2:76216577-76216596 | None:intergenic | 30.0% | |
| CATGAACGTCAATAAGTAAA+AGG | + | chr8.2:76217708-76217727 | None:intergenic | 30.0% | |
| CCATAAATACCTAAGCAAAA+GGG | + | chr8.2:76218584-76218603 | None:intergenic | 30.0% | |
| CTGATTCATGTGAAAACTAT+GGG | - | chr8.2:76216344-76216363 | MS.gene011220:CDS | 30.0% | |
| CTGTCAATTGCAGATAATAA+CGG | + | chr8.2:76216911-76216930 | None:intergenic | 30.0% | |
| CTTGAAAGGATGTTTGATTA+GGG | + | chr8.2:76218043-76218062 | None:intergenic | 30.0% | |
| GAAACTAAAATCTGATGGTT+AGG | - | chr8.2:76216672-76216691 | MS.gene011220:CDS | 30.0% | |
| TAAACACAAATCTTCAACAC+AGG | + | chr8.2:76216725-76216744 | None:intergenic | 30.0% | |
| TAAATTGATATATGCACCAC+TGG | + | chr8.2:76217604-76217623 | None:intergenic | 30.0% | |
| TATAATCGATGTGAAGAGAA+AGG | - | chr8.2:76216629-76216648 | MS.gene011220:CDS | 30.0% | |
| TCAGTAAAGTATGCTTTCTA+TGG | - | chr8.2:76218952-76218971 | MS.gene011220:intron | 30.0% | |
| TGATGGAAACTAAAATCTGA+TGG | - | chr8.2:76216667-76216686 | MS.gene011220:CDS | 30.0% | |
| TTTATCTCACTCAAATCAGT+TGG | - | chr8.2:76217866-76217885 | MS.gene011220:intron | 30.0% | |
| TTTCTTTCTTTCTGTTGTGA+TGG | - | chr8.2:76216238-76216257 | MS.gene011220:intron | 30.0% | |
| ! | ACTGATTCATGTGAAAACTA+TGG | - | chr8.2:76216343-76216362 | MS.gene011220:CDS | 30.0% |
| ! | ACTGTAATTTTCACATATGC+TGG | + | chr8.2:76217308-76217327 | None:intergenic | 30.0% |
| ! | ATTCTTCTTTTAGACTCTGA+AGG | - | chr8.2:76217390-76217409 | MS.gene011220:intron | 30.0% |
| ! | ATTTTGTCATCTGTTCTTCA+AGG | - | chr8.2:76218541-76218560 | MS.gene011220:intron | 30.0% |
| ! | CGTTTAGTGATTTGAACTTT+TGG | - | chr8.2:76216473-76216492 | MS.gene011220:CDS | 30.0% |
| ! | TTCTTCTTTTAGACTCTGAA+GGG | - | chr8.2:76217391-76217410 | MS.gene011220:intron | 30.0% |
| ! | TTTGCAAATTTGAAATCACG+GGG | - | chr8.2:76217270-76217289 | MS.gene011220:intron | 30.0% |
| !! | AGATATGTAGCTTTGTTTGT+AGG | - | chr8.2:76217643-76217662 | MS.gene011220:intron | 30.0% |
| !! | TATGTTACTTTCTGTTCTGA+TGG | - | chr8.2:76216376-76216395 | MS.gene011220:intron | 30.0% |
| !! | TCTGTTTTTCGTTTGTTTCT+TGG | - | chr8.2:76216313-76216332 | MS.gene011220:CDS | 30.0% |
| !!! | GGTTATGTTTTTTGTCTTGA+TGG | - | chr8.2:76216650-76216669 | MS.gene011220:CDS | 30.0% |
| !!! | TGCATTTTGATTTCCCAAAA+GGG | + | chr8.2:76218306-76218325 | None:intergenic | 30.0% |
| !!! | TTGCATTTTGATTTCCCAAA+AGG | + | chr8.2:76218307-76218326 | None:intergenic | 30.0% |
| AAAAGTTACCTCCCATAACA+TGG | - | chr8.2:76218870-76218889 | MS.gene011220:intron | 35.0% | |
| AAACATTACCTGCTCTGATA+AGG | + | chr8.2:76218908-76218927 | None:intergenic | 35.0% | |
| AAATTGTGATGCAGCAGATA+GGG | + | chr8.2:76217951-76217970 | None:intergenic | 35.0% | |
| AACATTACCTGCTCTGATAA+GGG | + | chr8.2:76218907-76218926 | None:intergenic | 35.0% | |
| AATAAAAGAGCAAATACGCC+AGG | + | chr8.2:76218278-76218297 | None:intergenic | 35.0% | |
| ATAAAAGAGCAAATACGCCA+GGG | + | chr8.2:76218277-76218296 | None:intergenic | 35.0% | |
| CCTCATAAGAAGATAAGTCA+CGG | - | chr8.2:76217769-76217788 | MS.gene011220:CDS | 35.0% | |
| CTCATAAGAAGATAAGTCAC+GGG | - | chr8.2:76217770-76217789 | MS.gene011220:CDS | 35.0% | |
| GCATAACAAACAATCACTAC+AGG | + | chr8.2:76216578-76216597 | None:intergenic | 35.0% | |
| GCCATAAATACCTAAGCAAA+AGG | + | chr8.2:76218585-76218604 | None:intergenic | 35.0% | |
| GCTAACTTTGAACTGTTTGT+CGG | + | chr8.2:76217453-76217472 | None:intergenic | 35.0% | |
| GGAGTGATTTAACGTTGAAT+GGG | - | chr8.2:76216494-76216513 | MS.gene011220:CDS | 35.0% | |
| TAAATTGTGATGCAGCAGAT+AGG | + | chr8.2:76217952-76217971 | None:intergenic | 35.0% | |
| TCAAGTATTACTCAGATGAC+TGG | - | chr8.2:76217427-76217446 | MS.gene011220:intron | 35.0% | |
| TCATAAGAAGATAAGTCACG+GGG | - | chr8.2:76217771-76217790 | MS.gene011220:CDS | 35.0% | |
| TCCATACTGAAACATCTGTA+GGG | - | chr8.2:76217345-76217364 | MS.gene011220:intron | 35.0% | |
| TGGAGTGATTTAACGTTGAA+TGG | - | chr8.2:76216493-76216512 | MS.gene011220:CDS | 35.0% | |
| TTCCATACTGAAACATCTGT+AGG | - | chr8.2:76217344-76217363 | MS.gene011220:intron | 35.0% | |
| ! | CATATTTGCGTTCCTTTTAC+AGG | - | chr8.2:76218652-76218671 | MS.gene011220:intron | 35.0% |
| ! | CCCTTTTGCTTAGGTATTTA+TGG | - | chr8.2:76218581-76218600 | MS.gene011220:intron | 35.0% |
| ! | GAAAATTGCTCTTTTACGAC+TGG | - | chr8.2:76217182-76217201 | MS.gene011220:intron | 35.0% |
| ! | GTTATGGGAGGTAACTTTTT+CGG | + | chr8.2:76218869-76218888 | None:intergenic | 35.0% |
| ! | TCTTGTTAGTTCTCAATTCC+TGG | + | chr8.2:76217145-76217164 | None:intergenic | 35.0% |
| ! | TTGCAAATTTGAAATCACGG+GGG | - | chr8.2:76217271-76217290 | MS.gene011220:intron | 35.0% |
| !! | AAATATTATCGGTGTCGTAC+TGG | - | chr8.2:76217097-76217116 | MS.gene011220:intron | 35.0% |
| !!! | ACACCTCATTTTTTGCTTGA+AGG | - | chr8.2:76218812-76218831 | MS.gene011220:intron | 35.0% |
| AACACTTCTGTGAGAACTCA+TGG | - | chr8.2:76218377-76218396 | MS.gene011220:intron | 40.0% | |
| AACATGTGTCAGTTTGACAC+CGG | - | chr8.2:76217025-76217044 | MS.gene011220:intron | 40.0% | |
| AGACTGTTAAGACAAATGCG+CGG | - | chr8.2:76217496-76217515 | MS.gene011220:intron | 40.0% | |
| AGCACTGCTAGTTATAACAC+AGG | + | chr8.2:76216771-76216790 | None:intergenic | 40.0% | |
| AGCATCAGCATCCATGTTAT+GGG | + | chr8.2:76218884-76218903 | None:intergenic | 40.0% | |
| ATAGATACTGCTACCACTAC+TGG | + | chr8.2:76218208-76218227 | None:intergenic | 40.0% | |
| ATATTTCAGTGTTGTGTCGC+CGG | + | chr8.2:76217047-76217066 | None:intergenic | 40.0% | |
| ATCTGATGGTTAGGGATAAG+AGG | - | chr8.2:76216681-76216700 | MS.gene011220:CDS | 40.0% | |
| ATTAGGGCCATCAAAACTGA+AGG | + | chr8.2:76218027-76218046 | None:intergenic | 40.0% | |
| CCGTGACTTATCTTCTTATG+AGG | + | chr8.2:76217772-76217791 | None:intergenic | 40.0% | |
| CTTGTAAGTGCTTCATAACC+AGG | - | chr8.2:76217124-76217143 | MS.gene011220:intron | 40.0% | |
| GACTTGCATTTCTTTGTCAC+CGG | - | chr8.2:76218496-76218515 | MS.gene011220:intron | 40.0% | |
| GAGCAATGTTGACAAAAGTG+AGG | - | chr8.2:76218674-76218693 | MS.gene011220:intron | 40.0% | |
| GATATTGCAGACACTAACTC+AGG | - | chr8.2:76219033-76219052 | MS.gene011220:intron | 40.0% | |
| GCTAGTTATAACACAGGTCT+GGG | + | chr8.2:76216765-76216784 | None:intergenic | 40.0% | |
| GTCAACATTGCTCCTGTAAA+AGG | + | chr8.2:76218667-76218686 | None:intergenic | 40.0% | |
| TAAAAGAGCAAATACGCCAG+GGG | + | chr8.2:76218276-76218295 | None:intergenic | 40.0% | |
| TAAGAGGATGTACTTAGCTG+TGG | - | chr8.2:76216697-76216716 | MS.gene011220:CDS | 40.0% | |
| TCAGCAATAACTGCAGATCA+TGG | + | chr8.2:76216945-76216964 | None:intergenic | 40.0% | |
| TGCTAGTTATAACACAGGTC+TGG | + | chr8.2:76216766-76216785 | None:intergenic | 40.0% | |
| TGTTGTCATAGCAGCTATAG+CGG | - | chr8.2:76216849-76216868 | MS.gene011220:intron | 40.0% | |
| TTAGGGCCATCAAAACTGAA+GGG | + | chr8.2:76218026-76218045 | None:intergenic | 40.0% | |
| ! | AAATTTGAAATCACGGGGGA+GGG | - | chr8.2:76217275-76217294 | MS.gene011220:intron | 40.0% |
| ! | CTGGTTATGAAGCACTTACA+AGG | + | chr8.2:76217126-76217145 | None:intergenic | 40.0% |
| !! | AGTTCTTGTGAAAGTGTCTC+TGG | + | chr8.2:76219071-76219090 | None:intergenic | 40.0% |
| !!! | GTAACTTTTTCGGCGATAAG+AGG | + | chr8.2:76218859-76218878 | None:intergenic | 40.0% |
| ATCAGCATCCATGTTATGGG+AGG | + | chr8.2:76218881-76218900 | None:intergenic | 45.0% | |
| CTTCTTATCGAAGACGTGTC+AGG | - | chr8.2:76216997-76217016 | MS.gene011220:intron | 45.0% | |
| GAGCATCAGCATCCATGTTA+TGG | + | chr8.2:76218885-76218904 | None:intergenic | 45.0% | |
| GCCCTACAGATGTTTCAGTA+TGG | + | chr8.2:76217349-76217368 | None:intergenic | 45.0% | |
| GGTGTCAAACTGACACATGT+TGG | + | chr8.2:76217026-76217045 | None:intergenic | 45.0% | |
| TAGCAGCTATAGCGGCATTA+TGG | - | chr8.2:76216857-76216876 | MS.gene011220:intron | 45.0% | |
| TAGCAGTGCTATAGCACTGT+TGG | - | chr8.2:76216781-76216800 | MS.gene011220:intron | 45.0% | |
| TAGGGCCATCAAAACTGAAG+GGG | + | chr8.2:76218025-76218044 | None:intergenic | 45.0% | |
| TGTGTTGTGTGCTAGTGTAG+TGG | - | chr8.2:76217578-76217597 | MS.gene011220:intron | 45.0% | |
| TTGCATTTCTTTGTCACCGG+TGG | - | chr8.2:76218499-76218518 | MS.gene011220:intron | 45.0% | |
| ! | AAGTGAGGCACTTGAGAACT+TGG | - | chr8.2:76218689-76218708 | MS.gene011220:intron | 45.0% |
| ! | AATTTGAAATCACGGGGGAG+GGG | - | chr8.2:76217276-76217295 | MS.gene011220:intron | 45.0% |
| ! | ATGCAGTCACCCTTTTGCTT+AGG | - | chr8.2:76218572-76218591 | MS.gene011220:intron | 45.0% |
| ! | CAAATTTGAAATCACGGGGG+AGG | - | chr8.2:76217274-76217293 | MS.gene011220:intron | 45.0% |
| ! | CACTCAAATCAGTTGGTGTC+CGG | - | chr8.2:76217873-76217892 | MS.gene011220:intron | 45.0% |
| ! | CTCATTTTCATCATCGCCAC+CGG | + | chr8.2:76218518-76218537 | None:intergenic | 45.0% |
| ! | TTGACGAGATCGTTGATGGA+GGG | - | chr8.2:76218730-76218749 | MS.gene011220:intron | 45.0% |
| !! | AACTGAAGGGGGTGTCAAAA+AGG | + | chr8.2:76218013-76218032 | None:intergenic | 45.0% |
| !!! | TTATTTTTTCAAAATATTAT+CGG | - | chr8.2:76217086-76217105 | MS.gene011220:intron | 5.0% |
| AAGACAAATGCGCGGACAGA+AGG | - | chr8.2:76217504-76217523 | MS.gene011220:intron | 50.0% | |
| AGGGCCATCAAAACTGAAGG+GGG | + | chr8.2:76218024-76218043 | None:intergenic | 50.0% | |
| ATACCAGTAGAGGGCTGACT+TGG | + | chr8.2:76218128-76218147 | None:intergenic | 50.0% | |
| ATGAACTTCCCAAAGACCCC+TGG | - | chr8.2:76218257-76218276 | MS.gene011220:intron | 50.0% | |
| CAAATACGCCAGGGGTCTTT+GGG | + | chr8.2:76218268-76218287 | None:intergenic | 50.0% | |
| CTCCATCAACGATCTCGTCA+AGG | + | chr8.2:76218731-76218750 | None:intergenic | 50.0% | |
| GCAGACACTAACTCAGGCAT+GGG | - | chr8.2:76219039-76219058 | MS.gene011220:intron | 50.0% | |
| GTCAGTGCGACAGAGATTCT+TGG | + | chr8.2:76216976-76216995 | None:intergenic | 50.0% | |
| TGATGCTCCCTTATCAGAGC+AGG | - | chr8.2:76218897-76218916 | MS.gene011220:intron | 50.0% | |
| TGCAGACACTAACTCAGGCA+TGG | - | chr8.2:76219038-76219057 | MS.gene011220:intron | 50.0% | |
| TGCCTTGACGAGATCGTTGA+TGG | - | chr8.2:76218726-76218745 | MS.gene011220:intron | 50.0% | |
| ! | ATTTGAAATCACGGGGGAGG+GGG | - | chr8.2:76217277-76217296 | MS.gene011220:intron | 50.0% |
| ! | CTTGACGAGATCGTTGATGG+AGG | - | chr8.2:76218729-76218748 | MS.gene011220:intron | 50.0% |
| !! | GACACCCCCTTCAGTTTTGA+TGG | - | chr8.2:76218017-76218036 | MS.gene011220:intron | 50.0% |
| !! | TCACAAGGCATTGCCAGTAG+TGG | - | chr8.2:76218192-76218211 | MS.gene011220:intron | 50.0% |
| CATCCAAGTCAGCCCTCTAC+TGG | - | chr8.2:76218122-76218141 | MS.gene011220:intron | 55.0% | |
| GATGCAGCAGATAGGGATGC+AGG | + | chr8.2:76217944-76217963 | None:intergenic | 55.0% | |
| GCAAATACGCCAGGGGTCTT+TGG | + | chr8.2:76218269-76218288 | None:intergenic | 55.0% | |
| TGTGCTAGTGTAGTGGCCAG+TGG | - | chr8.2:76217585-76217604 | MS.gene011220:intron | 55.0% | |
| ! | TTTGAAATCACGGGGGAGGG+GGG | - | chr8.2:76217278-76217297 | MS.gene011220:intron | 55.0% |
| TTGAAATCACGGGGGAGGGG+GGG | - | chr8.2:76217279-76217298 | MS.gene011220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 76216109 | 76219102 | 76216109 | ID=MS.gene011220 |
| chr8.2 | mRNA | 76216109 | 76219102 | 76216109 | ID=MS.gene011220.t1;Parent=MS.gene011220 |
| chr8.2 | exon | 76219091 | 76219102 | 76219091 | ID=MS.gene011220.t1.exon1;Parent=MS.gene011220.t1 |
| chr8.2 | CDS | 76219091 | 76219102 | 76219091 | ID=cds.MS.gene011220.t1;Parent=MS.gene011220.t1 |
| chr8.2 | exon | 76217686 | 76217845 | 76217686 | ID=MS.gene011220.t1.exon2;Parent=MS.gene011220.t1 |
| chr8.2 | CDS | 76217686 | 76217845 | 76217686 | ID=cds.MS.gene011220.t1;Parent=MS.gene011220.t1 |
| chr8.2 | exon | 76216618 | 76216765 | 76216618 | ID=MS.gene011220.t1.exon3;Parent=MS.gene011220.t1 |
| chr8.2 | CDS | 76216618 | 76216765 | 76216618 | ID=cds.MS.gene011220.t1;Parent=MS.gene011220.t1 |
| chr8.2 | exon | 76216460 | 76216537 | 76216460 | ID=MS.gene011220.t1.exon4;Parent=MS.gene011220.t1 |
| chr8.2 | CDS | 76216460 | 76216537 | 76216460 | ID=cds.MS.gene011220.t1;Parent=MS.gene011220.t1 |
| chr8.2 | exon | 76216293 | 76216377 | 76216293 | ID=MS.gene011220.t1.exon5;Parent=MS.gene011220.t1 |
| chr8.2 | CDS | 76216293 | 76216377 | 76216293 | ID=cds.MS.gene011220.t1;Parent=MS.gene011220.t1 |
| chr8.2 | exon | 76216109 | 76216168 | 76216109 | ID=MS.gene011220.t1.exon6;Parent=MS.gene011220.t1 |
| chr8.2 | CDS | 76216109 | 76216168 | 76216109 | ID=cds.MS.gene011220.t1;Parent=MS.gene011220.t1 |
| Gene Sequence |
| Protein sequence |
