Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37394.t1 | XP_013444380.1 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.60E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37394.t1 | Q8H1F4 | 74.7 | 178 | 45 | 0 | 3 | 180 | 4 | 181 | 8.8e-69 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37394.t1 | Q5QQ32 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.3e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02023 | MS.gene37394 | PPI |
| MS.gene50077 | MS.gene37394 | PPI |
| MS.gene014282 | MS.gene37394 | PPI |
| MS.gene056700 | MS.gene37394 | PPI |
| MS.gene043279 | MS.gene37394 | PPI |
| MS.gene37394 | MS.gene003223 | PPI |
| MS.gene07800 | MS.gene37394 | PPI |
| MS.gene021666 | MS.gene37394 | PPI |
| MS.gene79635 | MS.gene37394 | PPI |
| MS.gene74608 | MS.gene37394 | PPI |
| MS.gene02789 | MS.gene37394 | PPI |
| MS.gene063166 | MS.gene37394 | PPI |
| MS.gene011220 | MS.gene37394 | PPI |
| MS.gene003764 | MS.gene37394 | PPI |
| MS.gene74768 | MS.gene37394 | PPI |
| MS.gene064893 | MS.gene37394 | PPI |
| MS.gene30333 | MS.gene37394 | PPI |
| MS.gene45686 | MS.gene37394 | PPI |
| MS.gene68223 | MS.gene37394 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37394.t1 | MTR_8g017630 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.38e-131 | 365 |
| MS.gene37394.t1 | MTR_0350s0010 | 95.930 | 172 | 6 | 1 | 10 | 180 | 49 | 220 | 1.39e-117 | 332 |
| MS.gene37394.t1 | MTR_2g028750 | 75.862 | 174 | 42 | 0 | 6 | 179 | 31 | 204 | 9.70e-93 | 268 |
| MS.gene37394.t1 | MTR_7g009640 | 85.075 | 134 | 20 | 0 | 10 | 143 | 2 | 135 | 7.49e-81 | 236 |
| MS.gene37394.t1 | MTR_8g018030 | 87.302 | 63 | 8 | 0 | 3 | 65 | 4 | 66 | 3.21e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37394.t1 | AT4G08520 | 74.302 | 179 | 46 | 0 | 2 | 180 | 3 | 181 | 3.54e-96 | 276 |
| MS.gene37394.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene37394.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene37394.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene37394.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 86 | 259 | 3.42e-93 | 272 |
| MS.gene37394.t1 | AT1G60970 | 74.138 | 174 | 45 | 0 | 6 | 179 | 3 | 176 | 1.88e-92 | 267 |
| MS.gene37394.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
| MS.gene37394.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
Find 27 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATCAGCATCCATGTTA+TGG | 0.360054 | 8.4:-74334642 | None:intergenic |
| GCTAACTTTGAACTGTTTGT+TGG | 0.367588 | 8.4:-74333227 | None:intergenic |
| TGCCTTGACGAGATCGTTGA+TGG | 0.379967 | 8.4:+74334487 | MS.gene37394:CDS |
| ACCATAAATACCTCAGCAAA+AGG | 0.402570 | 8.4:-74334342 | None:intergenic |
| AAACATTACCTGCTCTGATA+AGG | 0.416364 | 8.4:-74334665 | None:intergenic |
| AACATTACCTGCTCTGATAA+GGG | 0.433513 | 8.4:-74334664 | None:intergenic |
| AGGATTATACTTGAAACAAA+TGG | 0.444102 | 8.4:+74334592 | MS.gene37394:intron |
| AGCATCAGCATCCATGTTAT+GGG | 0.455423 | 8.4:-74334641 | None:intergenic |
| AAGTGAGGCACTTGAGAACT+TGG | 0.464349 | 8.4:+74334450 | MS.gene37394:CDS |
| AGTTCTTGTGAAAGTGTCTC+TGG | 0.483853 | 8.4:-74334829 | None:intergenic |
| GACTTGCATTTCTTTGTCAC+CGG | 0.485386 | 8.4:+74334256 | MS.gene37394:CDS |
| TGCAGACACTAACTCAGGCA+TGG | 0.549441 | 8.4:+74334799 | MS.gene37394:intron |
| AAGACAAATGCAAGGACAGA+AGG | 0.556427 | 8.4:+74333281 | MS.gene37394:CDS |
| CCATAAATACCTCAGCAAAA+GGG | 0.557798 | 8.4:-74334341 | None:intergenic |
| TGATGCTCCCTTATCAGAGC+AGG | 0.557847 | 8.4:+74334657 | MS.gene37394:CDS |
| AAAAGTGACCTCCCATAACA+TGG | 0.561356 | 8.4:+74334630 | MS.gene37394:CDS |
| TCAAGTATTACTCAGATGAC+TGG | 0.569025 | 8.4:+74333204 | MS.gene37394:CDS |
| GCAGACACTAACTCAGGCAT+GGG | 0.586167 | 8.4:+74334800 | MS.gene37394:intron |
| TTGCATTTCTTTGTCACCGG+TGG | 0.592057 | 8.4:+74334259 | MS.gene37394:CDS |
| CTCCATCAACGATCTCGTCA+AGG | 0.600844 | 8.4:-74334489 | None:intergenic |
| CTTGACGAGATCGTTGATGG+AGG | 0.615640 | 8.4:+74334490 | MS.gene37394:CDS |
| GATATTGCAGACACTAACTC+AGG | 0.619538 | 8.4:+74334794 | MS.gene37394:intron |
| TTGACGAGATCGTTGATGGA+GGG | 0.639948 | 8.4:+74334491 | MS.gene37394:CDS |
| ATCAGCATCCATGTTATGGG+AGG | 0.659855 | 8.4:-74334638 | None:intergenic |
| AGACTCTGAAGGGAAGCGTG+TGG | 0.660009 | 8.4:+74333178 | MS.gene37394:CDS |
| GAGCAATGTTGACAAAAGTG+AGG | 0.686328 | 8.4:+74334435 | MS.gene37394:CDS |
| AGACTGTTAAGACAAATGCA+AGG | 0.700096 | 8.4:+74333273 | MS.gene37394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATCCAATTATTAT+CGG | + | chr8.4:74332859-74332878 | MS.gene37394:intron | 10.0% |
| !!! | TTTTTGATACATTCAAATAA+AGG | - | chr8.4:74333865-74333884 | None:intergenic | 15.0% |
| !! | AACAATTTAAGAAAAAGACT+TGG | + | chr8.4:74333730-74333749 | MS.gene37394:intron | 20.0% |
| !! | AATAAAACAATAGATACCAT+TGG | - | chr8.4:74334109-74334128 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAATAGAACTAT+TGG | - | chr8.4:74333507-74333526 | None:intergenic | 20.0% |
| !! | GTGAACTTTATATAAATCAA+AGG | - | chr8.4:74333932-74333951 | None:intergenic | 20.0% |
| !! | TCATTTATTTGTTTACCTTT+CGG | + | chr8.4:74334046-74334065 | MS.gene37394:intron | 20.0% |
| !! | TGATTTATATAAAGTTCACA+AGG | + | chr8.4:74333933-74333952 | MS.gene37394:intron | 20.0% |
| !!! | AGATATGCAACTTTATTTTT+AGG | + | chr8.4:74333422-74333441 | MS.gene37394:intron | 20.0% |
| !!! | AGTCTTTTTCTTAAATTGTT+AGG | - | chr8.4:74333730-74333749 | None:intergenic | 20.0% |
| !!! | AGTTATTTTTAACATGTGAA+TGG | + | chr8.4:74333988-74334007 | MS.gene37394:intron | 20.0% |
| !!! | AGTTTTGCAAATTTGAAAAA+GGG | + | chr8.4:74333055-74333074 | MS.gene37394:intron | 20.0% |
| !!! | ATGAATCATATTTTAGGATT+TGG | + | chr8.4:74332183-74332202 | MS.gene37394:intron | 20.0% |
| !!! | GATCAAATGAATCATATTTT+AGG | + | chr8.4:74332177-74332196 | MS.gene37394:intron | 20.0% |
| !!! | GGTTATTATATTATGCATTT+TGG | + | chr8.4:74333443-74333462 | MS.gene37394:intron | 20.0% |
| !!! | TGAATCATATTTTAGGATTT+GGG | + | chr8.4:74332184-74332203 | MS.gene37394:intron | 20.0% |
| !!! | TTATATTATGCATTTTGGTT+TGG | + | chr8.4:74333448-74333467 | MS.gene37394:intron | 20.0% |
| ! | AATCCTTCATGCAAAAAATA+AGG | - | chr8.4:74334578-74334597 | None:intergenic | 25.0% |
| ! | AGGATTATACTTGAAACAAA+TGG | + | chr8.4:74334592-74334611 | MS.gene37394:intron | 25.0% |
| ! | ATTCTAATCAATTTAGGAAC+TGG | + | chr8.4:74332055-74332074 | MS.gene37394:intron | 25.0% |
| ! | ATTGATGTTAAGAGAAAGAA+AGG | + | chr8.4:74332405-74332424 | MS.gene37394:intron | 25.0% |
| ! | CATTTATTTGTTTACCTTTC+GGG | + | chr8.4:74334047-74334066 | MS.gene37394:intron | 25.0% |
| ! | GAAGAATAAATAGACTTTCA+TGG | - | chr8.4:74334550-74334569 | None:intergenic | 25.0% |
| ! | GAGCTTATTCTAATCAATTT+AGG | + | chr8.4:74332049-74332068 | MS.gene37394:intron | 25.0% |
| ! | TAAACACAAATCTTCAACAT+AGG | - | chr8.4:74332505-74332524 | None:intergenic | 25.0% |
| ! | TAATAGGATTAACTTTACTG+TGG | + | chr8.4:74332477-74332496 | MS.gene37394:intron | 25.0% |
| ! | TGATGATTAGCGATAATAAT+AGG | + | chr8.4:74332461-74332480 | MS.gene37394:intron | 25.0% |
| ! | TTCTAATCAATTTAGGAACT+GGG | + | chr8.4:74332056-74332075 | MS.gene37394:intron | 25.0% |
| ! | TTGAATCTAATCACATGTTT+CGG | - | chr8.4:74332833-74332852 | None:intergenic | 25.0% |
| ! | TTTCCGAATTAAAATCAGAT+GGG | + | chr8.4:74334382-74334401 | MS.gene37394:intron | 25.0% |
| ! | TTTGTTCTGATACACTATTT+AGG | + | chr8.4:74332601-74332620 | MS.gene37394:intron | 25.0% |
| !! | CAGTTTTGCAAATTTGAAAA+AGG | + | chr8.4:74333054-74333073 | MS.gene37394:intron | 25.0% |
| !! | GAAAATTGCTCTTTTATGAA+TGG | + | chr8.4:74332970-74332989 | MS.gene37394:intron | 25.0% |
| !! | TTTTCCGAATTAAAATCAGA+TGG | + | chr8.4:74334381-74334400 | MS.gene37394:intron | 25.0% |
| !!! | AACATCCTTTCTAGTTTATT+AGG | + | chr8.4:74333816-74333835 | MS.gene37394:intron | 25.0% |
| !!! | AGAAGAATGTTTTTTATCGA+AGG | - | chr8.4:74333155-74333174 | None:intergenic | 25.0% |
| !!! | ATACCCATCTGATTTTAATT+CGG | - | chr8.4:74334388-74334407 | None:intergenic | 25.0% |
| !!! | GCCATATTTTTATATCTGTA+GGG | + | chr8.4:74333122-74333141 | MS.gene37394:intron | 25.0% |
| !!! | TATGTTTTGTGTTTGTTGAT+TGG | + | chr8.4:74332220-74332239 | MS.gene37394:intron | 25.0% |
| !!! | TCATTTTATCATTTAGCTCA+AGG | - | chr8.4:74333578-74333597 | None:intergenic | 25.0% |
| !!! | TGCCATATTTTTATATCTGT+AGG | + | chr8.4:74333121-74333140 | MS.gene37394:intron | 25.0% |
| AACACTCTTCAATAAACCAA+TGG | + | chr8.4:74334090-74334109 | MS.gene37394:intron | 30.0% | |
| ACTAGAAAGGATGTTTGATT+AGG | - | chr8.4:74333811-74333830 | None:intergenic | 30.0% | |
| AGATCAGTGTTATGAACTAA+CGG | + | chr8.4:74332545-74332564 | MS.gene37394:intron | 30.0% | |
| ATTAGGCACTTCAAAATTGA+AGG | - | chr8.4:74333794-74333813 | None:intergenic | 30.0% | |
| CAATGACTTATCATCTTATG+AGG | - | chr8.4:74333550-74333569 | None:intergenic | 30.0% | |
| CTGATTCATGTGAAAACTAT+GGG | + | chr8.4:74332123-74332142 | MS.gene37394:intron | 30.0% | |
| CTGTCAATTGCATATAATAG+TGG | - | chr8.4:74332694-74332713 | None:intergenic | 30.0% | |
| GCAGGGATAAATGTTATAAA+CGG | - | chr8.4:74332331-74332350 | None:intergenic | 30.0% | |
| GCCCTACAGATATAAAAATA+TGG | - | chr8.4:74333126-74333145 | None:intergenic | 30.0% | |
| GTGTCTTGCATATATGTAAA+TGG | + | chr8.4:74333667-74333686 | MS.gene37394:intron | 30.0% | |
| TAAATCAAAGGCCAAAAAAC+TGG | - | chr8.4:74333920-74333939 | None:intergenic | 30.0% | |
| TCTAGTGTAATGCTTAATTG+TGG | + | chr8.4:74333364-74333383 | MS.gene37394:intron | 30.0% | |
| TCTTATTAGTTCCTAATTCC+TGG | - | chr8.4:74332933-74332952 | None:intergenic | 30.0% | |
| TTAGTTCATAACACTGATCT+GGG | - | chr8.4:74332545-74332564 | None:intergenic | 30.0% | |
| TTCTTAAATTGTTAGGATGC+TGG | - | chr8.4:74333723-74333742 | None:intergenic | 30.0% | |
| TTTCGCCTAATAAACTAGAA+AGG | - | chr8.4:74333824-74333843 | None:intergenic | 30.0% | |
| TTTCTTTCTTTCTGTTGTGA+TGG | + | chr8.4:74332017-74332036 | MS.gene37394:intron | 30.0% | |
| ! | ACTGATTCATGTGAAAACTA+TGG | + | chr8.4:74332122-74332141 | MS.gene37394:intron | 30.0% |
| ! | ATTCTTCTTTTAGACTCTGA+AGG | + | chr8.4:74333167-74333186 | MS.gene37394:CDS | 30.0% |
| ! | ATTTTGTCATCTGTTCTTCA+AGG | + | chr8.4:74334301-74334320 | MS.gene37394:CDS | 30.0% |
| ! | GGAGTGATTTAAGTTTGAAT+GGG | + | chr8.4:74332265-74332284 | MS.gene37394:intron | 30.0% |
| ! | TGGAGTGATTTAAGTTTGAA+TGG | + | chr8.4:74332264-74332283 | MS.gene37394:intron | 30.0% |
| ! | TTATAAACGGATCTGAAGTA+AGG | - | chr8.4:74332318-74332337 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTAGACTCTGAA+GGG | + | chr8.4:74333168-74333187 | MS.gene37394:CDS | 30.0% |
| !! | AGTGATTGTTTGTTATGCTT+TGG | + | chr8.4:74332351-74332370 | MS.gene37394:intron | 30.0% |
| !! | TATGTTACTTTCTGTTCTGA+TGG | + | chr8.4:74332155-74332174 | MS.gene37394:intron | 30.0% |
| !! | TCTGTTTTTCGTTTGTTTCT+TGG | + | chr8.4:74332092-74332111 | MS.gene37394:intron | 30.0% |
| !!! | ACACCTTATTTTTTGCATGA+AGG | + | chr8.4:74334572-74334591 | MS.gene37394:intron | 30.0% |
| AAACATTACCTGCTCTGATA+AGG | - | chr8.4:74334668-74334687 | None:intergenic | 35.0% | |
| AAAGAAACACGATAACCATG+AGG | - | chr8.4:74334152-74334171 | None:intergenic | 35.0% | |
| AAAGATAGAGAAGCTTACGT+TGG | - | chr8.4:74331899-74331918 | None:intergenic | 35.0% | |
| AAATGCAAGCAGAATTGATG+TGG | - | chr8.4:74333019-74333038 | None:intergenic | 35.0% | |
| AACATTACCTGCTCTGATAA+GGG | - | chr8.4:74334667-74334686 | None:intergenic | 35.0% | |
| AAGAAACACGATAACCATGA+GGG | - | chr8.4:74334151-74334170 | None:intergenic | 35.0% | |
| AATAAATGAGCAAACACACC+AGG | - | chr8.4:74334035-74334054 | None:intergenic | 35.0% | |
| ACATGGACACCGATAATAAT+TGG | - | chr8.4:74332871-74332890 | None:intergenic | 35.0% | |
| ACCATAAATACCTCAGCAAA+AGG | - | chr8.4:74334345-74334364 | None:intergenic | 35.0% | |
| AGACTGTTAAGACAAATGCA+AGG | + | chr8.4:74333273-74333292 | MS.gene37394:CDS | 35.0% | |
| AGTGTAATGCTTAATTGTGG+TGG | + | chr8.4:74333367-74333386 | MS.gene37394:intron | 35.0% | |
| ATAAATGAGCAAACACACCA+GGG | - | chr8.4:74334034-74334053 | None:intergenic | 35.0% | |
| ATGGTTATCGTGTTTCTTTG+AGG | + | chr8.4:74334153-74334172 | MS.gene37394:intron | 35.0% | |
| CATAACAAACAATCACTGCA+GGG | - | chr8.4:74332348-74332367 | None:intergenic | 35.0% | |
| CATATTTGTGATCCATTTGC+AGG | + | chr8.4:74334413-74334432 | MS.gene37394:intron | 35.0% | |
| CCATAAATACCTCAGCAAAA+GGG | - | chr8.4:74334344-74334363 | None:intergenic | 35.0% | |
| GATTGGATCGTTTAGTGATT+TGG | + | chr8.4:74332237-74332256 | MS.gene37394:intron | 35.0% | |
| GCTAACTTTGAACTGTTTGT+TGG | - | chr8.4:74333230-74333249 | None:intergenic | 35.0% | |
| GTTAGTTCATAACACTGATC+TGG | - | chr8.4:74332546-74332565 | None:intergenic | 35.0% | |
| TCAAGTATTACTCAGATGAC+TGG | + | chr8.4:74333204-74333223 | MS.gene37394:CDS | 35.0% | |
| TGACTATCTTCTGTCATAGA+CGG | + | chr8.4:74333608-74333627 | MS.gene37394:intron | 35.0% | |
| TGTTACATCAAGAATCGTGT+TGG | - | chr8.4:74333403-74333422 | None:intergenic | 35.0% | |
| TTGTCAAATAGCAGCTATAG+CGG | + | chr8.4:74332632-74332651 | MS.gene37394:intron | 35.0% | |
| ! | ACGTCGTTGATTAGAAGTTT+CGG | - | chr8.4:74332777-74332796 | None:intergenic | 35.0% |
| ! | TCGTTTAGTGATTTGGACTT+TGG | + | chr8.4:74332244-74332263 | MS.gene37394:intron | 35.0% |
| !! | ATTGTCGTATATGGTGTCAT+TGG | + | chr8.4:74332894-74332913 | MS.gene37394:intron | 35.0% |
| !! | GAACTGTATTTTTCAGACAC+TGG | - | chr8.4:74333088-74333107 | None:intergenic | 35.0% |
| !! | TTGTCGTATATGGTGTCATT+GGG | + | chr8.4:74332895-74332914 | MS.gene37394:intron | 35.0% |
| !!! | TTGCATTTTGATTTCCCGAA+AGG | - | chr8.4:74334064-74334083 | None:intergenic | 35.0% |
| AAAAGTGACCTCCCATAACA+TGG | + | chr8.4:74334630-74334649 | MS.gene37394:CDS | 40.0% | |
| AAGACAAATGCAAGGACAGA+AGG | + | chr8.4:74333281-74333300 | MS.gene37394:CDS | 40.0% | |
| AGCATCAGCATCCATGTTAT+GGG | - | chr8.4:74334644-74334663 | None:intergenic | 40.0% | |
| AGGCACTTCAAAATTGAAGG+CGG | - | chr8.4:74333791-74333810 | None:intergenic | 40.0% | |
| CATGCACGTCGATAAGTAAA+AGG | - | chr8.4:74333484-74333503 | None:intergenic | 40.0% | |
| CCATATACGACAATGACACA+TGG | - | chr8.4:74332888-74332907 | None:intergenic | 40.0% | |
| GACTTGCATTTCTTTGTCAC+CGG | + | chr8.4:74334256-74334275 | MS.gene37394:CDS | 40.0% | |
| GAGCAATGTTGACAAAAGTG+AGG | + | chr8.4:74334435-74334454 | MS.gene37394:CDS | 40.0% | |
| GATATTGCAGACACTAACTC+AGG | + | chr8.4:74334794-74334813 | MS.gene37394:intron | 40.0% | |
| GCATAACAAACAATCACTGC+AGG | - | chr8.4:74332349-74332368 | None:intergenic | 40.0% | |
| TAAATGAGCAAACACACCAG+GGG | - | chr8.4:74334033-74334052 | None:intergenic | 40.0% | |
| TCCAAGTTAGCACTCTACTA+TGG | + | chr8.4:74333892-74333911 | MS.gene37394:intron | 40.0% | |
| TCTATCTCAGTCAAATCAGC+TGG | + | chr8.4:74333645-74333664 | MS.gene37394:intron | 40.0% | |
| ! | CCATGTGTCATTGTCGTATA+TGG | + | chr8.4:74332885-74332904 | MS.gene37394:intron | 40.0% |
| ! | CTCATTTTCATCATCACCAC+CGG | - | chr8.4:74334278-74334297 | None:intergenic | 40.0% |
| !! | AATTGAAGGCGGTGTCATAA+AGG | - | chr8.4:74333780-74333799 | None:intergenic | 40.0% |
| !! | AGTTCTTGTGAAAGTGTCTC+TGG | - | chr8.4:74334832-74334851 | None:intergenic | 40.0% |
| !! | CCCTTTTGCTGAGGTATTTA+TGG | + | chr8.4:74334341-74334360 | MS.gene37394:intron | 40.0% |
| !!! | CTACTATGGCACCAGTTTTT+TGG | + | chr8.4:74333906-74333925 | MS.gene37394:intron | 40.0% |
| !!! | GTCACTTTTTCAGCGATAAG+AGG | - | chr8.4:74334619-74334638 | None:intergenic | 40.0% |
| AAAACTTCTGTGAGCCCTCA+TGG | + | chr8.4:74334134-74334153 | MS.gene37394:intron | 45.0% | |
| ATCAGCATCCATGTTATGGG+AGG | - | chr8.4:74334641-74334660 | None:intergenic | 45.0% | |
| CTTCTAATCAACGACGTGTC+CGG | + | chr8.4:74332780-74332799 | MS.gene37394:intron | 45.0% | |
| GAGCATCAGCATCCATGTTA+TGG | - | chr8.4:74334645-74334664 | None:intergenic | 45.0% | |
| GTCAACATTGCTCCTGCAAA+TGG | - | chr8.4:74334428-74334447 | None:intergenic | 45.0% | |
| GTGCTTCATAGCCAGGAATT+AGG | + | chr8.4:74332919-74332938 | MS.gene37394:intron | 45.0% | |
| TCAGCAGTAACTGCAAGTCA+TGG | - | chr8.4:74332728-74332747 | None:intergenic | 45.0% | |
| TTGCATTTCTTTGTCACCGG+TGG | + | chr8.4:74334259-74334278 | MS.gene37394:CDS | 45.0% | |
| ! | AAGTGAGGCACTTGAGAACT+TGG | + | chr8.4:74334450-74334469 | MS.gene37394:CDS | 45.0% |
| ! | ATGACTTGCAGTTACTGCTG+AGG | + | chr8.4:74332727-74332746 | MS.gene37394:intron | 45.0% |
| ! | CACAAGGCATTTGCTAGTAG+TGG | + | chr8.4:74333949-74333968 | MS.gene37394:intron | 45.0% |
| ! | GCCATAGTAGAGTGCTAACT+TGG | - | chr8.4:74333896-74333915 | None:intergenic | 45.0% |
| ! | TTCGTGTCACTGACACATGT+CGG | - | chr8.4:74332809-74332828 | None:intergenic | 45.0% |
| ! | TTGACGAGATCGTTGATGGA+GGG | + | chr8.4:74334491-74334510 | MS.gene37394:CDS | 45.0% |
| !! | TAACGGTGCTATAGCACTGT+TGG | + | chr8.4:74332562-74332581 | MS.gene37394:intron | 45.0% |
| CTCCATCAACGATCTCGTCA+AGG | - | chr8.4:74334492-74334511 | None:intergenic | 50.0% | |
| GCAGACACTAACTCAGGCAT+GGG | + | chr8.4:74334800-74334819 | MS.gene37394:intron | 50.0% | |
| GTCGCTACCATGAATCTCTG+TGG | + | chr8.4:74332749-74332768 | MS.gene37394:intron | 50.0% | |
| TGATGCTCCCTTATCAGAGC+AGG | + | chr8.4:74334657-74334676 | MS.gene37394:CDS | 50.0% | |
| TGCAATTGACAGCACTGCGA+TGG | + | chr8.4:74332702-74332721 | MS.gene37394:intron | 50.0% | |
| TGCAGACACTAACTCAGGCA+TGG | + | chr8.4:74334799-74334818 | MS.gene37394:intron | 50.0% | |
| TGCCTTGACGAGATCGTTGA+TGG | + | chr8.4:74334487-74334506 | MS.gene37394:CDS | 50.0% | |
| ! | ATGCAGTCACCCTTTTGCTG+AGG | + | chr8.4:74334332-74334351 | MS.gene37394:CDS | 50.0% |
| ! | CTTGACGAGATCGTTGATGG+AGG | + | chr8.4:74334490-74334509 | MS.gene37394:CDS | 50.0% |
| !! | ATTGGGAGTGCTTCATAGCC+AGG | + | chr8.4:74332912-74332931 | MS.gene37394:intron | 50.0% |
| !! | TTCGGTGCCACAGAGATTCA+TGG | - | chr8.4:74332759-74332778 | None:intergenic | 50.0% |
| AGCAAACACACCAGGGGTCT+TGG | - | chr8.4:74334027-74334046 | None:intergenic | 55.0% | |
| ATGAACTTCCCCAAGACCCC+TGG | + | chr8.4:74334014-74334033 | MS.gene37394:intron | 55.0% | |
| CAAACACACCAGGGGTCTTG+GGG | - | chr8.4:74334025-74334044 | None:intergenic | 55.0% | |
| CACTGACACATGTCGGACAC+CGG | - | chr8.4:74332802-74332821 | None:intergenic | 55.0% | |
| GCAAACACACCAGGGGTCTT+GGG | - | chr8.4:74334026-74334045 | None:intergenic | 55.0% | |
| ! | AGACTCTGAAGGGAAGCGTG+TGG | + | chr8.4:74333178-74333197 | MS.gene37394:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 74331889 | 74334863 | 74331889 | ID=MS.gene37394 |
| chr8.4 | mRNA | 74331889 | 74334863 | 74331889 | ID=MS.gene37394.t1;Parent=MS.gene37394 |
| chr8.4 | exon | 74331889 | 74331900 | 74331889 | ID=MS.gene37394.t1.exon1;Parent=MS.gene37394.t1 |
| chr8.4 | CDS | 74331889 | 74331900 | 74331889 | ID=cds.MS.gene37394.t1;Parent=MS.gene37394.t1 |
| chr8.4 | exon | 74333143 | 74333302 | 74333143 | ID=MS.gene37394.t1.exon2;Parent=MS.gene37394.t1 |
| chr8.4 | CDS | 74333143 | 74333302 | 74333143 | ID=cds.MS.gene37394.t1;Parent=MS.gene37394.t1 |
| chr8.4 | exon | 74334206 | 74334353 | 74334206 | ID=MS.gene37394.t1.exon3;Parent=MS.gene37394.t1 |
| chr8.4 | CDS | 74334206 | 74334353 | 74334206 | ID=cds.MS.gene37394.t1;Parent=MS.gene37394.t1 |
| chr8.4 | exon | 74334435 | 74334512 | 74334435 | ID=MS.gene37394.t1.exon4;Parent=MS.gene37394.t1 |
| chr8.4 | CDS | 74334435 | 74334512 | 74334435 | ID=cds.MS.gene37394.t1;Parent=MS.gene37394.t1 |
| chr8.4 | exon | 74334594 | 74334678 | 74334594 | ID=MS.gene37394.t1.exon5;Parent=MS.gene37394.t1 |
| chr8.4 | CDS | 74334594 | 74334678 | 74334594 | ID=cds.MS.gene37394.t1;Parent=MS.gene37394.t1 |
| chr8.4 | exon | 74334804 | 74334863 | 74334804 | ID=MS.gene37394.t1.exon6;Parent=MS.gene37394.t1 |
| chr8.4 | CDS | 74334804 | 74334863 | 74334804 | ID=cds.MS.gene37394.t1;Parent=MS.gene37394.t1 |
| Gene Sequence |
| Protein sequence |
