Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79635.t1 | XP_004489170.1 | 95 | 180 | 9 | 0 | 1 | 180 | 1 | 180 | 5.20E-89 | 337 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79635.t1 | Q8H1F4 | 76.4 | 174 | 41 | 0 | 6 | 179 | 7 | 180 | 1.6e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79635.t1 | A0A1S2XGU1 | 95.0 | 180 | 9 | 0 | 1 | 180 | 1 | 180 | 3.8e-89 | 337.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79635 | MS.gene68223 | PPI |
| MS.gene79635 | MS.gene02023 | PPI |
| MS.gene79635 | MS.gene003223 | PPI |
| MS.gene043279 | MS.gene79635 | PPI |
| MS.gene79635 | MS.gene043279 | PPI |
| MS.gene011220 | MS.gene79635 | PPI |
| MS.gene79635 | MS.gene02789 | PPI |
| MS.gene79635 | MS.gene021666 | PPI |
| MS.gene07800 | MS.gene79635 | PPI |
| MS.gene74608 | MS.gene79635 | PPI |
| MS.gene064893 | MS.gene79635 | PPI |
| MS.gene30333 | MS.gene79635 | PPI |
| MS.gene79635 | MS.gene37394 | PPI |
| MS.gene063166 | MS.gene79635 | PPI |
| MS.gene003764 | MS.gene79635 | PPI |
| MS.gene79635 | MS.gene50077 | PPI |
| MS.gene74768 | MS.gene79635 | PPI |
| MS.gene014282 | MS.gene79635 | PPI |
| MS.gene79635 | MS.gene056700 | PPI |
| MS.gene79635 | MS.gene011220 | PPI |
| MS.gene79635 | MS.gene45686 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79635.t1 | MTR_8g017630 | 85.475 | 179 | 26 | 0 | 1 | 179 | 1 | 179 | 1.30e-113 | 320 |
| MS.gene79635.t1 | MTR_0350s0010 | 83.140 | 172 | 28 | 1 | 9 | 179 | 48 | 219 | 7.28e-104 | 297 |
| MS.gene79635.t1 | MTR_2g028750 | 73.988 | 173 | 45 | 0 | 8 | 180 | 33 | 205 | 1.13e-93 | 271 |
| MS.gene79635.t1 | MTR_7g009640 | 93.333 | 135 | 9 | 0 | 9 | 143 | 1 | 135 | 2.02e-87 | 253 |
| MS.gene79635.t1 | MTR_8g018030 | 81.356 | 59 | 11 | 0 | 7 | 65 | 8 | 66 | 3.39e-30 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79635.t1 | AT4G08520 | 76.437 | 174 | 41 | 0 | 6 | 179 | 7 | 180 | 1.20e-98 | 283 |
| MS.gene79635.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 1.15e-95 | 275 |
| MS.gene79635.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 1.15e-95 | 275 |
| MS.gene79635.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 1.15e-95 | 275 |
| MS.gene79635.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 85 | 258 | 3.92e-94 | 274 |
| MS.gene79635.t1 | AT1G60970 | 70.520 | 173 | 51 | 0 | 8 | 180 | 5 | 177 | 5.49e-90 | 261 |
| MS.gene79635.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 58 | 179 | 18 | 139 | 2.18e-58 | 179 |
| MS.gene79635.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 58 | 179 | 18 | 139 | 2.18e-58 | 179 |
Find 21 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCGGAGTCAGCATCTA+TGG | 0.342225 | 7.3:+88453004 | None:intergenic |
| TGCCTTGACGAGATAGTTGA+TGG | 0.404780 | 7.3:-88453166 | MS.gene79635:CDS |
| AAGAGAGGCACTTGAGAACT+TGG | 0.422153 | 7.3:-88453203 | MS.gene79635:CDS |
| TGACTCCGCCTTGTCAGAAC+AGG | 0.488909 | 7.3:-88452994 | MS.gene79635:intron |
| GACCTGCATTTCTTTGTCAC+TGG | 0.516261 | 7.3:-88453504 | MS.gene79635:CDS |
| TTCCCTCAGAGTCTAAAAGA+AGG | 0.525951 | 7.3:+88454642 | None:intergenic |
| ATGCAATCACCCTTCTGTTG+AGG | 0.540407 | 7.3:-88453428 | MS.gene79635:intron |
| TGCCAGTGACAAAGAAATGC+AGG | 0.541473 | 7.3:+88453502 | None:intergenic |
| TGCAGACACTAACTCAAGCA+TGG | 0.552067 | 7.3:-88452430 | MS.gene79635:intron |
| AGCCAAAATACCTCAACAGA+AGG | 0.555442 | 7.3:+88453418 | None:intergenic |
| AAGACAAATGCTCGTACAGA+AGG | 0.576135 | 7.3:-88454530 | MS.gene79635:intron |
| GCAGACACTAACTCAAGCAT+GGG | 0.596243 | 7.3:-88452429 | MS.gene79635:intron |
| GCCAAAATACCTCAACAGAA+GGG | 0.598170 | 7.3:+88453419 | None:intergenic |
| CTCCATCAACTATCTCGTCA+AGG | 0.603291 | 7.3:+88453164 | None:intergenic |
| GTCAGCATCTATGGTGTGTG+AGG | 0.633753 | 7.3:+88453013 | None:intergenic |
| TTACACTACCTGTTCTGACA+AGG | 0.635534 | 7.3:+88452986 | None:intergenic |
| TTGACGAGATAGTTGATGGA+GGG | 0.641968 | 7.3:-88453162 | MS.gene79635:intron |
| CTTGACGAGATAGTTGATGG+AGG | 0.654429 | 7.3:-88453163 | MS.gene79635:CDS |
| GAATAATGTTGACAAAAGAG+AGG | 0.658404 | 7.3:-88453218 | MS.gene79635:CDS |
| AGGATGATACTTGAAACAAG+TGG | 0.684743 | 7.3:-88453059 | MS.gene79635:CDS |
| CACTACCTGTTCTGACAAGG+CGG | 0.717288 | 7.3:+88452989 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTCATAAATTCATATT+GGG | + | chr7.3:88454422-88454441 | None:intergenic | 10.0% |
| !! | TATATGTAAAATTTATAAAC+TGG | + | chr7.3:88455538-88455557 | None:intergenic | 10.0% |
| !! | TTAATTTCATAAATTCATAT+TGG | + | chr7.3:88454423-88454442 | None:intergenic | 10.0% |
| !!! | AAATTCAATATTTTCATAAT+CGG | + | chr7.3:88454827-88454846 | None:intergenic | 10.0% |
| !!! | TTATTTTTTGTATCATTTAT+AGG | - | chr7.3:88454903-88454922 | MS.gene79635:intron | 10.0% |
| !! | ACATGATTATAAATGTTAAA+TGG | - | chr7.3:88453698-88453717 | MS.gene79635:intron | 15.0% |
| !! | TAATGATGAATAGAAAAATA+TGG | - | chr7.3:88453965-88453984 | MS.gene79635:intron | 15.0% |
| !!! | AATTAGTTTTAAAAAACGAA+TGG | + | chr7.3:88455053-88455072 | None:intergenic | 15.0% |
| !!! | TTTCTATTCATCATTATTTT+GGG | + | chr7.3:88453961-88453980 | None:intergenic | 15.0% |
| !!! | TTTTCTATTCATCATTATTT+TGG | + | chr7.3:88453962-88453981 | None:intergenic | 15.0% |
| !!! | TTTTCTCAAATTTTTATTAC+CGG | - | chr7.3:88455401-88455420 | MS.gene79635:intron | 15.0% |
| !!! | TTTTGATTCTTAAAACTTAT+AGG | + | chr7.3:88452562-88452581 | None:intergenic | 15.0% |
| !! | AAAATGTCTTGTAACTTATA+AGG | - | chr7.3:88453933-88453952 | MS.gene79635:intron | 20.0% |
| !! | AAAATTAAATCATCTACAGT+CGG | - | chr7.3:88455244-88455263 | MS.gene79635:intron | 20.0% |
| !! | AGCTATTAATATTTGTGTTA+AGG | - | chr7.3:88453410-88453429 | MS.gene79635:intron | 20.0% |
| !! | ATTTGAGAAAATAGAAGTTA+TGG | + | chr7.3:88455392-88455411 | None:intergenic | 20.0% |
| !! | CAATTTATAAATCTACATCT+TGG | - | chr7.3:88452721-88452740 | MS.gene79635:intron | 20.0% |
| !! | GTAGATTTATAAATTGATGT+TGG | + | chr7.3:88452717-88452736 | None:intergenic | 20.0% |
| !! | TAATGCCATAAATTAATTCA+TGG | - | chr7.3:88453029-88453048 | MS.gene79635:CDS | 20.0% |
| !! | TATTGTGTCTATTTCAATTT+CGG | - | chr7.3:88452646-88452665 | MS.gene79635:intron | 20.0% |
| !! | TCTTTCTGTTAATTTCATTT+CGG | - | chr7.3:88455183-88455202 | MS.gene79635:intron | 20.0% |
| !! | TTAAAAGTAAAACAAGTTTG+AGG | + | chr7.3:88455583-88455602 | None:intergenic | 20.0% |
| !! | TTATTATGACATTTACTATG+TGG | - | chr7.3:88454476-88454495 | MS.gene79635:intron | 20.0% |
| !! | TTTGAATTTAGATGTCAATA+TGG | - | chr7.3:88454845-88454864 | MS.gene79635:intron | 20.0% |
| !!! | AATGTTTTATGTATGTTGTT+TGG | - | chr7.3:88454535-88454554 | MS.gene79635:CDS | 20.0% |
| !!! | AGAAGGATATTTTTTATCAT+AGG | + | chr7.3:88453487-88453506 | None:intergenic | 20.0% |
| !!! | AGTTTTGACAGTTATATTTT+AGG | - | chr7.3:88455640-88455659 | MS.gene79635:intron | 20.0% |
| !!! | ATTTTTCCCTCTTTTTTTTA+TGG | + | chr7.3:88453918-88453937 | None:intergenic | 20.0% |
| !!! | TATGCATGTTATGTTTTAAA+AGG | - | chr7.3:88453750-88453769 | MS.gene79635:intron | 20.0% |
| !!! | TATTTGTGTTAAGGTATTAT+TGG | - | chr7.3:88453419-88453438 | MS.gene79635:intron | 20.0% |
| !!! | TCAAACTTGTTTTACTTTTA+AGG | - | chr7.3:88455582-88455601 | MS.gene79635:intron | 20.0% |
| !!! | TTAAACATATCATGTTACTT+TGG | - | chr7.3:88455663-88455682 | MS.gene79635:intron | 20.0% |
| !!! | TTTAGTATTTTTGAAACACT+TGG | + | chr7.3:88453110-88453129 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCTGTTCATACT+TGG | + | chr7.3:88454090-88454109 | None:intergenic | 20.0% |
| ! | AACTTGAATGTAAAGAGAAA+GGG | + | chr7.3:88452415-88452434 | None:intergenic | 25.0% |
| ! | AATGTTCCAACTAAAGAATT+TGG | + | chr7.3:88454449-88454468 | None:intergenic | 25.0% |
| ! | ATGTCTACCATAAAAAAAAG+AGG | - | chr7.3:88453908-88453927 | MS.gene79635:intron | 25.0% |
| ! | GCAATAACTACTAGTATATA+TGG | + | chr7.3:88454307-88454326 | None:intergenic | 25.0% |
| ! | TACAATGTAACACTTCATAA+TGG | + | chr7.3:88453316-88453335 | None:intergenic | 25.0% |
| ! | TCACAATTTATATTTCTCCA+AGG | - | chr7.3:88452881-88452900 | MS.gene79635:intron | 25.0% |
| ! | TCACTGACCAAAAAAATAAA+AGG | + | chr7.3:88454244-88454263 | None:intergenic | 25.0% |
| ! | TGTCTACCATAAAAAAAAGA+GGG | - | chr7.3:88453909-88453928 | MS.gene79635:intron | 25.0% |
| ! | TTTATAAACTGGATCTTCTA+CGG | + | chr7.3:88455527-88455546 | None:intergenic | 25.0% |
| !! | ACTGTGTCATACAATTTTAT+TGG | - | chr7.3:88452851-88452870 | MS.gene79635:intron | 25.0% |
| !! | TCTCTTTTACATTAGTTAGA+TGG | - | chr7.3:88452597-88452616 | MS.gene79635:intron | 25.0% |
| !! | TTTTCATTAAAATAGCATCG+CGG | - | chr7.3:88452996-88453015 | MS.gene79635:CDS | 25.0% |
| !!! | ATCTTGGTTTTCATCAATTT+GGG | - | chr7.3:88452737-88452756 | MS.gene79635:intron | 25.0% |
| !!! | TACTCCTCCTTTTATTTTTT+TGG | - | chr7.3:88454234-88454253 | MS.gene79635:intron | 25.0% |
| !!! | TCAAGTTGTGAACATTTTTA+TGG | - | chr7.3:88452428-88452447 | MS.gene79635:CDS | 25.0% |
| !!! | TTGAATGTGTTCATTTTTCA+TGG | - | chr7.3:88454050-88454069 | MS.gene79635:intron | 25.0% |
| AAAACAAATCTACCAACCTT+AGG | - | chr7.3:88454199-88454218 | MS.gene79635:intron | 30.0% | |
| AACTGTCGGATTATAATTTG+AGG | - | chr7.3:88454372-88454391 | MS.gene79635:intron | 30.0% | |
| ACTTCAAGTAATGGTTCAAT+TGG | + | chr7.3:88454782-88454801 | None:intergenic | 30.0% | |
| AGTAATATTGATCAAGCCTA+AGG | + | chr7.3:88454218-88454237 | None:intergenic | 30.0% | |
| ATTCATCCATTATGTGTTCA+AGG | - | chr7.3:88452524-88452543 | MS.gene79635:intron | 30.0% | |
| CAACTTGAATGTAAAGAGAA+AGG | + | chr7.3:88452416-88452435 | None:intergenic | 30.0% | |
| CTATCTTGCATAGATGAAAT+GGG | - | chr7.3:88454004-88454023 | MS.gene79635:intron | 30.0% | |
| CTGACCAAAAAAATAAAAGG+AGG | + | chr7.3:88454241-88454260 | None:intergenic | 30.0% | |
| GAATAATGTTGACAAAAGAG+AGG | - | chr7.3:88454925-88454944 | MS.gene79635:intron | 30.0% | |
| GAGTCTGATTAAGTACATTT+AGG | + | chr7.3:88454154-88454173 | None:intergenic | 30.0% | |
| TAACTGCCAAATTCTTTAGT+TGG | - | chr7.3:88454440-88454459 | MS.gene79635:intron | 30.0% | |
| TAATCATGTAAACTAGCACA+TGG | + | chr7.3:88453687-88453706 | None:intergenic | 30.0% | |
| TGTCTGCAATATGAAAAGTT+AGG | + | chr7.3:88455701-88455720 | None:intergenic | 30.0% | |
| ! | AATTTTTATTACCGGAGTCT+AGG | - | chr7.3:88455409-88455428 | MS.gene79635:intron | 30.0% |
| ! | GATGTTGAAAATGGATTCAA+TGG | + | chr7.3:88453211-88453230 | None:intergenic | 30.0% |
| ! | TTTCAAGTATCATCCTTCAA+GGG | + | chr7.3:88455080-88455099 | None:intergenic | 30.0% |
| !! | CATCTTGGTTTTCATCAATT+TGG | - | chr7.3:88452736-88452755 | MS.gene79635:intron | 30.0% |
| !! | GATTTGTTTTCATCACATGT+TGG | + | chr7.3:88454189-88454208 | None:intergenic | 30.0% |
| !! | TCAAGTATTTTTCAGATGAC+TGG | - | chr7.3:88453536-88453555 | MS.gene79635:CDS | 30.0% |
| !! | TCTTGGTTTTCATCAATTTG+GGG | - | chr7.3:88452738-88452757 | MS.gene79635:intron | 30.0% |
| !!! | GTTACTTTTTCAGCAATAAG+TGG | + | chr7.3:88455111-88455130 | None:intergenic | 30.0% |
| AAACTAATTTCCTCCCTTGA+AGG | - | chr7.3:88455064-88455083 | MS.gene79635:intron | 35.0% | |
| ACATTTACTATGTGGAACTG+TGG | - | chr7.3:88454484-88454503 | MS.gene79635:intron | 35.0% | |
| AGGATGATACTTGAAACAAG+TGG | - | chr7.3:88455084-88455103 | MS.gene79635:intron | 35.0% | |
| ATATTGATCAAGCCTAAGGT+TGG | + | chr7.3:88454214-88454233 | None:intergenic | 35.0% | |
| CAAGTTGCAATATCAACACA+TGG | + | chr7.3:88452803-88452822 | None:intergenic | 35.0% | |
| CGCAGCCATGAATTAATTTA+TGG | + | chr7.3:88453037-88453056 | None:intergenic | 35.0% | |
| CTCCAAGGTTTCCAATAAAA+TGG | - | chr7.3:88452896-88452915 | MS.gene79635:intron | 35.0% | |
| CTCTAAATCTAACAGTACCA+CGG | - | chr7.3:88455479-88455498 | MS.gene79635:intron | 35.0% | |
| GATTGACCTTGAACACATAA+TGG | + | chr7.3:88452533-88452552 | None:intergenic | 35.0% | |
| GCAATATGAAAAGTTAGGTC+AGG | + | chr7.3:88455696-88455715 | None:intergenic | 35.0% | |
| GCATGTTTAGAAAGAGTTGA+TGG | - | chr7.3:88453380-88453399 | MS.gene79635:intron | 35.0% | |
| GCTATCTTGCATAGATGAAA+TGG | - | chr7.3:88454003-88454022 | MS.gene79635:intron | 35.0% | |
| GTTAACATTCTAGTGAGACA+CGG | - | chr7.3:88455214-88455233 | MS.gene79635:intron | 35.0% | |
| TTCTCGAAGGTTTAAATACG+AGG | - | chr7.3:88453287-88453306 | MS.gene79635:intron | 35.0% | |
| TTGCAGATCAATACTGATGT+TGG | + | chr7.3:88454275-88454294 | None:intergenic | 35.0% | |
| ! | ACTATTTTGCCAATCACTGA+TGG | - | chr7.3:88454342-88454361 | MS.gene79635:intron | 35.0% |
| ! | ATCCTTCTTTTAGACTCTGA+GGG | - | chr7.3:88453499-88453518 | MS.gene79635:CDS | 35.0% |
| ! | GCTTTTTATGTTCATGAGAC+TGG | - | chr7.3:88453358-88453377 | MS.gene79635:intron | 35.0% |
| ! | GGTAGACATTTTTCACTTTC+AGG | + | chr7.3:88453897-88453916 | None:intergenic | 35.0% |
| ! | GTGTTGATATTGCAACTTGA+TGG | - | chr7.3:88452804-88452823 | MS.gene79635:intron | 35.0% |
| ! | GTTTCAAGTATCATCCTTCA+AGG | + | chr7.3:88455081-88455100 | None:intergenic | 35.0% |
| ! | TATCCTTCTTTTAGACTCTG+AGG | - | chr7.3:88453498-88453517 | MS.gene79635:CDS | 35.0% |
| ! | TTGGTAGCTGATATGTTGTT+TGG | - | chr7.3:88454554-88454573 | MS.gene79635:CDS | 35.0% |
| ! | TTTTTCACTCCATCAGTGAT+TGG | + | chr7.3:88454354-88454373 | None:intergenic | 35.0% |
| !! | ATTCAATGGCTGATTTTGAG+TGG | + | chr7.3:88453197-88453216 | None:intergenic | 35.0% |
| !! | TAGAAAGAGTTGATGGAAGT+GGG | - | chr7.3:88453387-88453406 | MS.gene79635:intron | 35.0% |
| !! | TTAGAAAGAGTTGATGGAAG+TGG | - | chr7.3:88453386-88453405 | MS.gene79635:intron | 35.0% |
| !! | TTCAATGGCTGATTTTGAGT+GGG | + | chr7.3:88453196-88453215 | None:intergenic | 35.0% |
| !!! | GCTAGTTTTGAACTGTTTGT+TGG | + | chr7.3:88453562-88453581 | None:intergenic | 35.0% |
| !!! | GTTTTAGCTTCAGTTCTTCA+GGG | - | chr7.3:88454684-88454703 | MS.gene79635:intron | 35.0% |
| AAGACAAATGCTCGTACAGA+AGG | - | chr7.3:88453613-88453632 | MS.gene79635:intron | 40.0% | |
| AATCGATCGAGTACTAGAGA+AGG | + | chr7.3:88453162-88453181 | None:intergenic | 40.0% | |
| AGAAGGAGAGAATGTGATGA+GGG | + | chr7.3:88453145-88453164 | None:intergenic | 40.0% | |
| AGCCAAAATACCTCAACAGA+AGG | + | chr7.3:88454728-88454747 | None:intergenic | 40.0% | |
| ATGAACACATTCAAGCACCA+AGG | + | chr7.3:88454044-88454063 | None:intergenic | 40.0% | |
| ATGTGACACACCTTTCTTGT+AGG | - | chr7.3:88453453-88453472 | MS.gene79635:CDS | 40.0% | |
| ATGTGGAACTGTGGAAGTTT+AGG | - | chr7.3:88454493-88454512 | MS.gene79635:intron | 40.0% | |
| CAAAATGCAAGCGTAAAAGC+AGG | + | chr7.3:88453339-88453358 | None:intergenic | 40.0% | |
| CTGATGGAGTGAAAAACTGT+CGG | - | chr7.3:88454358-88454377 | MS.gene79635:intron | 40.0% | |
| CTGGCAAGAACTTCAAGTAA+TGG | + | chr7.3:88454791-88454810 | None:intergenic | 40.0% | |
| GCAGTTGACTGAATTGATGT+TGG | - | chr7.3:88452923-88452942 | MS.gene79635:intron | 40.0% | |
| GCCAAAATACCTCAACAGAA+GGG | + | chr7.3:88454727-88454746 | None:intergenic | 40.0% | |
| GCTAAAGCATGGTACTTCAT+AGG | + | chr7.3:88455505-88455524 | None:intergenic | 40.0% | |
| GGACATGAAACCTACAAGAA+AGG | + | chr7.3:88453466-88453485 | None:intergenic | 40.0% | |
| GGCTGAACTGATGTTGAAAA+TGG | + | chr7.3:88453220-88453239 | None:intergenic | 40.0% | |
| GGGCAGAAGAAATAAAACCT+TGG | - | chr7.3:88454024-88454043 | MS.gene79635:intron | 40.0% | |
| TTACACTACCTGTTCTGACA+AGG | + | chr7.3:88455160-88455179 | None:intergenic | 40.0% | |
| TTCCCTCAGAGTCTAAAAGA+AGG | + | chr7.3:88453504-88453523 | None:intergenic | 40.0% | |
| ! | AATCGGACTAGAGATTGAAC+TGG | + | chr7.3:88454810-88454829 | None:intergenic | 40.0% |
| ! | TTTCTGGTAAAGTAGCTCTG+TGG | + | chr7.3:88453245-88453264 | None:intergenic | 40.0% |
| !! | ACACAGCACTTTGAAATCTG+AGG | + | chr7.3:88455301-88455320 | None:intergenic | 40.0% |
| !! | ACCCTTCTGTTGAGGTATTT+TGG | - | chr7.3:88454723-88454742 | MS.gene79635:intron | 40.0% |
| !! | CGCCATTTTATTGGAAACCT+TGG | + | chr7.3:88452901-88452920 | None:intergenic | 40.0% |
| !! | TTGACGAGATAGTTGATGGA+GGG | - | chr7.3:88454981-88455000 | MS.gene79635:intron | 40.0% |
| !! | TTGATGGAGGGTATGCATTT+TGG | - | chr7.3:88454993-88455012 | MS.gene79635:intron | 40.0% |
| !!! | CGTTTTAGCTTCAGTTCTTC+AGG | - | chr7.3:88454683-88454702 | MS.gene79635:intron | 40.0% |
| AATCGTATGTGTGTCTCGCA+AGG | - | chr7.3:88453059-88453078 | MS.gene79635:CDS | 45.0% | |
| ATCGTATGTGTGTCTCGCAA+GGG | - | chr7.3:88453060-88453079 | MS.gene79635:CDS | 45.0% | |
| ATGCAATCACCCTTCTGTTG+AGG | - | chr7.3:88454715-88454734 | MS.gene79635:intron | 45.0% | |
| ATGTGATGAGGGAGAAAGTG+AGG | + | chr7.3:88453134-88453153 | None:intergenic | 45.0% | |
| CAAGTATCATCCTTCAAGGG+AGG | + | chr7.3:88455077-88455096 | None:intergenic | 45.0% | |
| CTCCATCAACTATCTCGTCA+AGG | + | chr7.3:88454982-88455001 | None:intergenic | 45.0% | |
| GACCTGCATTTCTTTGTCAC+TGG | - | chr7.3:88454639-88454658 | MS.gene79635:CDS | 45.0% | |
| GAGAAGGAGAGAATGTGATG+AGG | + | chr7.3:88453146-88453165 | None:intergenic | 45.0% | |
| GATCTTCTACGGCTAAAGCA+TGG | + | chr7.3:88455516-88455535 | None:intergenic | 45.0% | |
| GCAGACACTAACTCAAGCAT+GGG | - | chr7.3:88455714-88455733 | MS.gene79635:intron | 45.0% | |
| GGTGTGTCACATGATACTTG+TGG | + | chr7.3:88453445-88453464 | None:intergenic | 45.0% | |
| TGAGCGTGAGTGATTGTAGT+GGG | - | chr7.3:88453838-88453857 | MS.gene79635:intron | 45.0% | |
| TGCAGACACTAACTCAAGCA+TGG | - | chr7.3:88455713-88455732 | MS.gene79635:intron | 45.0% | |
| TGCCAGTGACAAAGAAATGC+AGG | + | chr7.3:88454644-88454663 | None:intergenic | 45.0% | |
| TGCCTTGACGAGATAGTTGA+TGG | - | chr7.3:88454977-88454996 | MS.gene79635:intron | 45.0% | |
| TGTGATGAGGGAGAAAGTGA+GGG | + | chr7.3:88453133-88453152 | None:intergenic | 45.0% | |
| TTGAGCGTGAGTGATTGTAG+TGG | - | chr7.3:88453837-88453856 | MS.gene79635:intron | 45.0% | |
| ! | AGCACTAGTCGCTTTCTCAA+AGG | + | chr7.3:88453268-88453287 | None:intergenic | 45.0% |
| ! | GTCGCTTTCTCAAAGGTTTC+TGG | + | chr7.3:88453261-88453280 | None:intergenic | 45.0% |
| ! | TGGTAAAGTAGCTCTGTGGT+TGG | + | chr7.3:88453241-88453260 | None:intergenic | 45.0% |
| !! | AAGAGAGGCACTTGAGAACT+TGG | - | chr7.3:88454940-88454959 | MS.gene79635:intron | 45.0% |
| !! | AATGGCTGATTTTGAGTGGG+AGG | + | chr7.3:88453193-88453212 | None:intergenic | 45.0% |
| !! | CAACTGCGACGCCATTTTAT+TGG | + | chr7.3:88452910-88452929 | None:intergenic | 45.0% |
| !! | CTTGACGAGATAGTTGATGG+AGG | - | chr7.3:88454980-88454999 | MS.gene79635:intron | 45.0% |
| AAGCGACTAGTGCTTCTCGA+AGG | - | chr7.3:88453274-88453293 | MS.gene79635:intron | 50.0% | |
| CAACACTGACACCTAGACTC+CGG | + | chr7.3:88455423-88455442 | None:intergenic | 50.0% | |
| CACAAGTGTCAGTGCCATGT+CGG | + | chr7.3:88455361-88455380 | None:intergenic | 50.0% | |
| CACTACCTGTTCTGACAAGG+CGG | + | chr7.3:88455157-88455176 | None:intergenic | 50.0% | |
| GTCAGCATCTATGGTGTGTG+AGG | + | chr7.3:88455133-88455152 | None:intergenic | 50.0% | |
| GTGTGTTTGAGTGTCCGACA+TGG | - | chr7.3:88455344-88455363 | MS.gene79635:intron | 50.0% | |
| !! | GCTGATTTTGAGTGGGAGGA+TGG | + | chr7.3:88453189-88453208 | None:intergenic | 50.0% |
| CAAGGCGGAGTCAGCATCTA+TGG | + | chr7.3:88455142-88455161 | None:intergenic | 55.0% | |
| GCATGGTACTTCATAGGCCG+TGG | + | chr7.3:88455499-88455518 | None:intergenic | 55.0% | |
| TGACTCCGCCTTGTCAGAAC+AGG | - | chr7.3:88455149-88455168 | MS.gene79635:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 88452388 | 88455777 | 88452388 | ID=MS.gene79635 |
| chr7.3 | mRNA | 88452388 | 88455777 | 88452388 | ID=MS.gene79635.t1;Parent=MS.gene79635 |
| chr7.3 | exon | 88455766 | 88455777 | 88455766 | ID=MS.gene79635.t1.exon1;Parent=MS.gene79635.t1 |
| chr7.3 | CDS | 88455766 | 88455777 | 88455766 | ID=cds.MS.gene79635.t1;Parent=MS.gene79635.t1 |
| chr7.3 | exon | 88454531 | 88454690 | 88454531 | ID=MS.gene79635.t1.exon2;Parent=MS.gene79635.t1 |
| chr7.3 | CDS | 88454531 | 88454690 | 88454531 | ID=cds.MS.gene79635.t1;Parent=MS.gene79635.t1 |
| chr7.3 | exon | 88453429 | 88453576 | 88453429 | ID=MS.gene79635.t1.exon3;Parent=MS.gene79635.t1 |
| chr7.3 | CDS | 88453429 | 88453576 | 88453429 | ID=cds.MS.gene79635.t1;Parent=MS.gene79635.t1 |
| chr7.3 | exon | 88453163 | 88453240 | 88453163 | ID=MS.gene79635.t1.exon4;Parent=MS.gene79635.t1 |
| chr7.3 | CDS | 88453163 | 88453240 | 88453163 | ID=cds.MS.gene79635.t1;Parent=MS.gene79635.t1 |
| chr7.3 | exon | 88452995 | 88453079 | 88452995 | ID=MS.gene79635.t1.exon5;Parent=MS.gene79635.t1 |
| chr7.3 | CDS | 88452995 | 88453079 | 88452995 | ID=cds.MS.gene79635.t1;Parent=MS.gene79635.t1 |
| chr7.3 | exon | 88452388 | 88452447 | 88452388 | ID=MS.gene79635.t1.exon6;Parent=MS.gene79635.t1 |
| chr7.3 | CDS | 88452388 | 88452447 | 88452388 | ID=cds.MS.gene79635.t1;Parent=MS.gene79635.t1 |
| Gene Sequence |
| Protein sequence |
