Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003223.t1 | CAI29267.1 | 97.2 | 177 | 5 | 0 | 1 | 177 | 6 | 182 | 2.20E-87 | 331.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003223.t1 | Q940S5 | 75.7 | 177 | 43 | 0 | 1 | 177 | 1 | 177 | 1.3e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003223.t1 | G7IFU6 | 97.2 | 177 | 5 | 0 | 1 | 177 | 29 | 205 | 1.6e-87 | 331.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07800 | MS.gene003223 | PPI |
| MS.gene021666 | MS.gene003223 | PPI |
| MS.gene76242 | MS.gene003223 | PPI |
| MS.gene79635 | MS.gene003223 | PPI |
| MS.gene74984 | MS.gene003223 | PPI |
| MS.gene45686 | MS.gene003223 | PPI |
| MS.gene063166 | MS.gene003223 | PPI |
| MS.gene011220 | MS.gene003223 | PPI |
| MS.gene003764 | MS.gene003223 | PPI |
| MS.gene37394 | MS.gene003223 | PPI |
| MS.gene003223 | MS.gene74983 | PPI |
| MS.gene029334 | MS.gene003223 | PPI |
| MS.gene74768 | MS.gene003223 | PPI |
| MS.gene064893 | MS.gene003223 | PPI |
| MS.gene30333 | MS.gene003223 | PPI |
| MS.gene056700 | MS.gene003223 | PPI |
| MS.gene68223 | MS.gene003223 | PPI |
| MS.gene065067 | MS.gene003223 | PPI |
| MS.gene054585 | MS.gene003223 | PPI |
| MS.gene003223 | MS.gene63417 | PPI |
| MS.gene50077 | MS.gene003223 | PPI |
| MS.gene76243 | MS.gene003223 | PPI |
| MS.gene014282 | MS.gene003223 | PPI |
| MS.gene043279 | MS.gene003223 | PPI |
| MS.gene034150 | MS.gene003223 | PPI |
| MS.gene003223 | MS.gene38302 | PPI |
| MS.gene053143 | MS.gene003223 | PPI |
| MS.gene029335 | MS.gene003223 | PPI |
| MS.gene065068 | MS.gene003223 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003223.t1 | MTR_2g028750 | 97.175 | 177 | 5 | 0 | 1 | 177 | 29 | 205 | 8.94e-126 | 352 |
| MS.gene003223.t1 | MTR_8g017630 | 75.287 | 174 | 43 | 0 | 3 | 176 | 6 | 179 | 1.46e-92 | 267 |
| MS.gene003223.t1 | MTR_0350s0010 | 73.099 | 171 | 45 | 1 | 7 | 176 | 49 | 219 | 4.17e-86 | 252 |
| MS.gene003223.t1 | MTR_7g009640 | 75.000 | 128 | 32 | 0 | 7 | 134 | 2 | 129 | 1.03e-70 | 211 |
| MS.gene003223.t1 | MTR_8g018030 | 65.000 | 60 | 21 | 0 | 3 | 62 | 7 | 66 | 2.67e-23 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003223.t1 | AT1G60970 | 75.706 | 177 | 43 | 0 | 1 | 177 | 1 | 177 | 1.91e-97 | 279 |
| MS.gene003223.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 7 | 178 | 6.16e-92 | 265 |
| MS.gene003223.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 7 | 178 | 6.16e-92 | 265 |
| MS.gene003223.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 7 | 178 | 6.16e-92 | 265 |
| MS.gene003223.t1 | AT4G08520 | 71.512 | 172 | 49 | 0 | 5 | 176 | 9 | 180 | 1.42e-90 | 262 |
| MS.gene003223.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 87 | 258 | 1.97e-90 | 265 |
| MS.gene003223.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 55 | 176 | 18 | 139 | 3.36e-61 | 186 |
| MS.gene003223.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 55 | 176 | 18 | 139 | 3.36e-61 | 186 |
Find 35 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCCAGCTATAGTATT+TGG | 0.152147 | 2.1:+62274929 | None:intergenic |
| TGTGAAGAACATCTTTCTTT+TGG | 0.214773 | 2.1:-62276714 | MS.gene003223:CDS |
| AAAAGCTTCCTTTGCACTAT+TGG | 0.246999 | 2.1:+62276640 | None:intergenic |
| GGAAGTAATAGTACAGATTC+TGG | 0.313738 | 2.1:-62274905 | MS.gene003223:CDS |
| GATCTTCACTTCTTTGTTAC+CGG | 0.330747 | 2.1:-62276389 | MS.gene003223:CDS |
| ATTCAGTTGGCCTCCTGCTC+AGG | 0.331455 | 2.1:-62276313 | MS.gene003223:intron |
| TGGAGCTCCTTTGTCTGAAC+AGG | 0.379095 | 2.1:-62274885 | MS.gene003223:intron |
| TTCATGTAGTTCATTTAAGA+AGG | 0.405897 | 2.1:+62274729 | None:intergenic |
| ACTACTCCAAATACTATAGC+TGG | 0.418010 | 2.1:-62274935 | MS.gene003223:CDS |
| GAAGGAAGCACTGGAGAACT+TGG | 0.432743 | 2.1:-62276155 | MS.gene003223:CDS |
| ATCGATGAAATTATTGATGC+AGG | 0.435159 | 2.1:-62276115 | MS.gene003223:CDS |
| CTAAGTATTTCACAGATGAT+TGG | 0.437609 | 2.1:-62276667 | MS.gene003223:CDS |
| TAACAAAGAAGTGAAGATCT+TGG | 0.478841 | 2.1:+62276393 | None:intergenic |
| AATACTATAGCTGGGAAAGT+TGG | 0.483190 | 2.1:-62274926 | MS.gene003223:CDS |
| TATCTTATCCTCAGTTCTGC+AGG | 0.484498 | 2.1:-62276345 | MS.gene003223:CDS |
| GCTTCCTTTGCACTATTGGT+TGG | 0.497397 | 2.1:+62276644 | None:intergenic |
| TATCAGAAAACAACCTGAGC+AGG | 0.503709 | 2.1:+62276300 | None:intergenic |
| GTCAAGCATTGGCCTCAGCT+AGG | 0.506234 | 2.1:-62274769 | MS.gene003223:CDS |
| AGAAAGATGTTCTTCACAGA+AGG | 0.510757 | 2.1:+62276719 | None:intergenic |
| GCAGACACTAAGTCAAGCAT+TGG | 0.516098 | 2.1:-62274780 | MS.gene003223:intron |
| TCAAGCATTGGCCTCAGCTA+GGG | 0.518417 | 2.1:-62274768 | MS.gene003223:CDS |
| CTCACCTTCAGTGCGAGCAT+TGG | 0.533277 | 2.1:+62276586 | None:intergenic |
| CAGAGGCAATGTGGACAAGA+AGG | 0.539823 | 2.1:-62276173 | MS.gene003223:CDS |
| ATCTTCACTTCTTTGTTACC+GGG | 0.540662 | 2.1:-62276388 | MS.gene003223:CDS |
| TGTGGACAAGAAGGAAGCAC+TGG | 0.543071 | 2.1:-62276164 | MS.gene003223:CDS |
| AAGACCAATGCTCGCACTGA+AGG | 0.548318 | 2.1:-62276590 | MS.gene003223:intron |
| TCATGTAGTTCATTTAAGAA+GGG | 0.561156 | 2.1:+62274730 | None:intergenic |
| GAAAGATGTTCTTCACAGAA+GGG | 0.568085 | 2.1:+62276720 | None:intergenic |
| CTACTCCAAATACTATAGCT+GGG | 0.575062 | 2.1:-62274934 | MS.gene003223:CDS |
| TCGATGAAATTATTGATGCA+GGG | 0.579583 | 2.1:-62276114 | MS.gene003223:intron |
| CAACATACCTGTTCAGACAA+AGG | 0.612109 | 2.1:+62274878 | None:intergenic |
| TGCAAGATGTTCCCTAGCTG+AGG | 0.615227 | 2.1:+62274757 | None:intergenic |
| GGATTCTGACGGGAGACGTG+TGG | 0.626708 | 2.1:-62276693 | MS.gene003223:CDS |
| CAGAAAACAACCTGAGCAGG+AGG | 0.629118 | 2.1:+62276303 | None:intergenic |
| TTGGCCAACCAATAGTGCAA+AGG | 0.655463 | 2.1:-62276648 | MS.gene003223:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAAACTCACTTATTT+GGG | - | chr2.1:62277423-62277442 | MS.gene003223:intron | 15.0% |
| !! | TATAATTATTGAAATCACAA+TGG | + | chr2.1:62276871-62276890 | None:intergenic | 15.0% |
| !! | TTAAATTAAACTCACTTATT+TGG | - | chr2.1:62277422-62277441 | MS.gene003223:intron | 15.0% |
| !!! | AAATTTTTTTATGCTATCAA+AGG | + | chr2.1:62277404-62277423 | None:intergenic | 15.0% |
| !!! | AATAATGGTTCTAAAAATAT+GGG | + | chr2.1:62275112-62275131 | None:intergenic | 15.0% |
| !!! | AATTTTTTTATGCTATCAAA+GGG | + | chr2.1:62277403-62277422 | None:intergenic | 15.0% |
| !!! | ATCTTTTCATTTAATAACTA+TGG | + | chr2.1:62276567-62276586 | None:intergenic | 15.0% |
| !!! | TAATAATGGTTCTAAAAATA+TGG | + | chr2.1:62275113-62275132 | None:intergenic | 15.0% |
| !! | AAATCATTAGAAAGAAAATC+AGG | - | chr2.1:62276385-62276404 | MS.gene003223:CDS | 20.0% |
| !! | AATCATTAGAAAGAAAATCA+GGG | - | chr2.1:62276386-62276405 | MS.gene003223:CDS | 20.0% |
| !! | ATCTATAAGTATCTCTATAT+AGG | + | chr2.1:62275213-62275232 | None:intergenic | 20.0% |
| !! | CAAAAATAAAATGATAATCG+TGG | + | chr2.1:62274749-62274768 | None:intergenic | 20.0% |
| !! | CCATTATTATAACAGTTTAA+AGG | - | chr2.1:62275124-62275143 | MS.gene003223:intron | 20.0% |
| !! | CCTTTAAACTGTTATAATAA+TGG | + | chr2.1:62275127-62275146 | None:intergenic | 20.0% |
| !!! | TTTATTTTGTGAGAAGAATT+TGG | - | chr2.1:62275708-62275727 | MS.gene003223:intron | 20.0% |
| !!! | TTTTTGTGTGATTTTGATTT+TGG | - | chr2.1:62274854-62274873 | MS.gene003223:intron | 20.0% |
| ! | ACCTAAAAAAACGCATATTA+CGG | + | chr2.1:62275049-62275068 | None:intergenic | 25.0% |
| ! | ACTTCCATTATTTGTTTGTT+AGG | - | chr2.1:62276196-62276215 | MS.gene003223:intron | 25.0% |
| ! | AGAACCTAACAAACAAATAA+TGG | + | chr2.1:62276203-62276222 | None:intergenic | 25.0% |
| ! | ATAAAAAATACCTCTAGACA+AGG | + | chr2.1:62275693-62275712 | None:intergenic | 25.0% |
| ! | ATATGTATCCATCAAATCAA+AGG | + | chr2.1:62277110-62277129 | None:intergenic | 25.0% |
| ! | ATCAAAGGAAATGAATAAGA+AGG | + | chr2.1:62277095-62277114 | None:intergenic | 25.0% |
| ! | CAACAAGAAACATAAAATGT+TGG | + | chr2.1:62274946-62274965 | None:intergenic | 25.0% |
| ! | CTTTCAAGAAGAGTTTATAA+AGG | + | chr2.1:62277007-62277026 | None:intergenic | 25.0% |
| ! | GAATAATACTGCACAAAATA+TGG | + | chr2.1:62277288-62277307 | None:intergenic | 25.0% |
| ! | TATCTATGTGTGATATTCAA+AGG | - | chr2.1:62275981-62276000 | MS.gene003223:intron | 25.0% |
| ! | TCTAAAAATATGGGAAAATG+CGG | + | chr2.1:62275103-62275122 | None:intergenic | 25.0% |
| ! | TGCTAAAATTCAAATACAGT+GGG | + | chr2.1:62276897-62276916 | None:intergenic | 25.0% |
| ! | TTGCTAAAATTCAAATACAG+TGG | + | chr2.1:62276898-62276917 | None:intergenic | 25.0% |
| !! | ATTCAAATCTACACTGATTA+AGG | + | chr2.1:62276415-62276434 | None:intergenic | 25.0% |
| !! | CAACATTTTATGTTTCTTGT+TGG | - | chr2.1:62274944-62274963 | MS.gene003223:CDS | 25.0% |
| !! | CTTTTAACAAGGGTTTTTAA+GGG | + | chr2.1:62276977-62276996 | None:intergenic | 25.0% |
| !! | TCTTTTAACAAGGGTTTTTA+AGG | + | chr2.1:62276978-62276997 | None:intergenic | 25.0% |
| !! | TGATTTGATGGATACATATA+GGG | - | chr2.1:62277111-62277130 | MS.gene003223:intron | 25.0% |
| !! | TTAGATCAAAACGATAGTTT+TGG | - | chr2.1:62276592-62276611 | MS.gene003223:CDS | 25.0% |
| !! | TTGATTTGATGGATACATAT+AGG | - | chr2.1:62277110-62277129 | MS.gene003223:intron | 25.0% |
| !! | TTGTATTGTGTGTTATTGTT+AGG | - | chr2.1:62275498-62275517 | MS.gene003223:intron | 25.0% |
| !!! | ATTCATTTCCTTTGATTTGA+TGG | - | chr2.1:62277099-62277118 | MS.gene003223:intron | 25.0% |
| !!! | TTAGTAATAGCTCTAAATTG+TGG | - | chr2.1:62275004-62275023 | MS.gene003223:intron | 25.0% |
| AAGAAGGAAGTTGAGAAAAA+AGG | + | chr2.1:62277079-62277098 | None:intergenic | 30.0% | |
| AATGTTGGATCAAACGAAAA+AGG | + | chr2.1:62274931-62274950 | None:intergenic | 30.0% | |
| AATTGTGATAGAGAGGAATT+GGG | + | chr2.1:62277137-62277156 | None:intergenic | 30.0% | |
| ACAACAAAAAAGAAACCAAG+AGG | + | chr2.1:62276803-62276822 | None:intergenic | 30.0% | |
| ACCAAGAGGAAATAGAATTA+AGG | + | chr2.1:62276789-62276808 | None:intergenic | 30.0% | |
| ACTATGACTTAACCTTAGAA+GGG | - | chr2.1:62276727-62276746 | MS.gene003223:CDS | 30.0% | |
| AGAAGAGTTTATAAAGGTGA+AGG | + | chr2.1:62277001-62277020 | None:intergenic | 30.0% | |
| AGATGAATATTTAGTGAGAC+TGG | + | chr2.1:62277263-62277282 | None:intergenic | 30.0% | |
| ATAAAAACAAAAGTCGCACA+AGG | - | chr2.1:62276345-62276364 | MS.gene003223:CDS | 30.0% | |
| ATAAACTCCATCCAAGATTT+AGG | + | chr2.1:62276757-62276776 | None:intergenic | 30.0% | |
| ATCGATGAAATTATTGATGC+AGG | - | chr2.1:62276133-62276152 | MS.gene003223:CDS | 30.0% | |
| ATGAATATTTAGTGAGACTG+GGG | + | chr2.1:62277261-62277280 | None:intergenic | 30.0% | |
| CAAAGAAGAGAGAAATATGA+AGG | + | chr2.1:62277206-62277225 | None:intergenic | 30.0% | |
| CTAAGTATTTCACAGATGAT+TGG | - | chr2.1:62275581-62275600 | MS.gene003223:intron | 30.0% | |
| GAAAAAATTAGTGAAACCTC+AGG | + | chr2.1:62276450-62276469 | None:intergenic | 30.0% | |
| GAAATATGAAGGTGAAAATG+AGG | + | chr2.1:62277195-62277214 | None:intergenic | 30.0% | |
| GATGAATATTTAGTGAGACT+GGG | + | chr2.1:62277262-62277281 | None:intergenic | 30.0% | |
| TAAAAACAACCCATCAAAGT+AGG | + | chr2.1:62275779-62275798 | None:intergenic | 30.0% | |
| TAACAAAGAAGTGAAGATCT+TGG | + | chr2.1:62275858-62275877 | None:intergenic | 30.0% | |
| TCCTTAATTCTATTTCCTCT+TGG | - | chr2.1:62276785-62276804 | MS.gene003223:intron | 30.0% | |
| TCGATGAAATTATTGATGCA+GGG | - | chr2.1:62276134-62276153 | MS.gene003223:CDS | 30.0% | |
| TCTTCCAAAATTCAAATCGT+AGG | - | chr2.1:62276248-62276267 | MS.gene003223:intron | 30.0% | |
| TGAAAATGAGGTAAAAACCT+AGG | + | chr2.1:62277183-62277202 | None:intergenic | 30.0% | |
| TGCTAAAAATTGAGTGAAGT+TGG | - | chr2.1:62275406-62275425 | MS.gene003223:intron | 30.0% | |
| TGTATATGACCTACTTTGAT+GGG | - | chr2.1:62275767-62275786 | MS.gene003223:intron | 30.0% | |
| TTGTATATGACCTACTTTGA+TGG | - | chr2.1:62275766-62275785 | MS.gene003223:intron | 30.0% | |
| ! | ATCTTTCTTTTGGATTCTGA+CGG | - | chr2.1:62275544-62275563 | MS.gene003223:intron | 30.0% |
| ! | CTCTTTGGAAGTTTGAATAA+TGG | - | chr2.1:62276640-62276659 | MS.gene003223:CDS | 30.0% |
| ! | TGAAGATAAGAGATTTTGTG+AGG | - | chr2.1:62275452-62275471 | MS.gene003223:intron | 30.0% |
| ! | TGCTCCTTATTTATTTGTCT+CGG | - | chr2.1:62277230-62277249 | MS.gene003223:intron | 30.0% |
| ! | TGTGAAGAACATCTTTCTTT+TGG | - | chr2.1:62275534-62275553 | MS.gene003223:intron | 30.0% |
| ! | TTTTTATGCTATCAAAGGGA+AGG | + | chr2.1:62277399-62277418 | None:intergenic | 30.0% |
| !! | CGATTTGAATTTTGGAAGAA+AGG | + | chr2.1:62276247-62276266 | None:intergenic | 30.0% |
| !!! | CTTGGTTTCTTTTTTGTTGT+GGG | - | chr2.1:62276803-62276822 | MS.gene003223:intron | 30.0% |
| !!! | GTTTTAGAACCATTAGTTTG+TGG | - | chr2.1:62275338-62275357 | MS.gene003223:intron | 30.0% |
| !!! | TCTTGGTTTCTTTTTTGTTG+TGG | - | chr2.1:62276802-62276821 | MS.gene003223:intron | 30.0% |
| AAAAGCTTCCTTTGCACTAT+TGG | + | chr2.1:62275611-62275630 | None:intergenic | 35.0% | |
| AATACTATAGCTGGGAAAGT+TGG | - | chr2.1:62277322-62277341 | MS.gene003223:intron | 35.0% | |
| ACTACTCCAAATACTATAGC+TGG | - | chr2.1:62277313-62277332 | MS.gene003223:intron | 35.0% | |
| ACTTTCCCAGCTATAGTATT+TGG | + | chr2.1:62277322-62277341 | None:intergenic | 35.0% | |
| AGAAAGATGTTCTTCACAGA+AGG | + | chr2.1:62275532-62275551 | None:intergenic | 35.0% | |
| AGAAGCCAGTAATATTGTCA+AGG | + | chr2.1:62276039-62276058 | None:intergenic | 35.0% | |
| ATCTTCACTTCTTTGTTACC+GGG | - | chr2.1:62275860-62275879 | MS.gene003223:intron | 35.0% | |
| ATGGCAAATAATGAGATCAC+TGG | + | chr2.1:62276548-62276567 | None:intergenic | 35.0% | |
| CAATTGTGATAGAGAGGAAT+TGG | + | chr2.1:62277138-62277157 | None:intergenic | 35.0% | |
| CAGTAACAATTGTGATAGAG+AGG | + | chr2.1:62277144-62277163 | None:intergenic | 35.0% | |
| CTACTCCAAATACTATAGCT+GGG | - | chr2.1:62277314-62277333 | MS.gene003223:intron | 35.0% | |
| CTATGACTTAACCTTAGAAG+GGG | - | chr2.1:62276728-62276747 | MS.gene003223:CDS | 35.0% | |
| GAAAGATGTTCTTCACAGAA+GGG | + | chr2.1:62275531-62275550 | None:intergenic | 35.0% | |
| GAAGTCCTTGACAATATTAC+TGG | - | chr2.1:62276031-62276050 | MS.gene003223:intron | 35.0% | |
| GACTATGACTTAACCTTAGA+AGG | - | chr2.1:62276726-62276745 | MS.gene003223:CDS | 35.0% | |
| GATCTTCACTTCTTTGTTAC+CGG | - | chr2.1:62275859-62275878 | MS.gene003223:intron | 35.0% | |
| GGAAGTAATAGTACAGATTC+TGG | - | chr2.1:62277343-62277362 | MS.gene003223:intron | 35.0% | |
| TCCAAACTCTAAACCAATCA+GGG | + | chr2.1:62276525-62276544 | None:intergenic | 35.0% | |
| TGTTTGAACGTTTATCTCTG+AGG | + | chr2.1:62277042-62277061 | None:intergenic | 35.0% | |
| ! | AAGGTGAAGGTCTTTTAACA+AGG | + | chr2.1:62276988-62277007 | None:intergenic | 35.0% |
| ! | AGCTCCTACGATTTGAATTT+TGG | + | chr2.1:62276255-62276274 | None:intergenic | 35.0% |
| ! | AGGTGAAGGTCTTTTAACAA+GGG | + | chr2.1:62276987-62277006 | None:intergenic | 35.0% |
| ! | ATGCAGCAGTATTTAGCTTA+GGG | - | chr2.1:62274891-62274910 | MS.gene003223:CDS | 35.0% |
| ! | ATGTCTTTTCTGGACAAATG+CGG | + | chr2.1:62276932-62276951 | None:intergenic | 35.0% |
| ! | TCTTTCTTTTGGATTCTGAC+GGG | - | chr2.1:62275545-62275564 | MS.gene003223:intron | 35.0% |
| ! | TCTTTTTGTTGAACCTTGCT+TGG | - | chr2.1:62275378-62275397 | MS.gene003223:intron | 35.0% |
| ! | TTTTAGCACAAAACCAAGCA+AGG | + | chr2.1:62275394-62275413 | None:intergenic | 35.0% |
| !! | AACCATTAGTTTGTGGAAGT+TGG | - | chr2.1:62275345-62275364 | MS.gene003223:intron | 35.0% |
| !! | ACCATTAGTTTGTGGAAGTT+GGG | - | chr2.1:62275346-62275365 | MS.gene003223:intron | 35.0% |
| !! | GATTTTGTGAGGTGTTTTTG+AGG | - | chr2.1:62275463-62275482 | MS.gene003223:intron | 35.0% |
| !!! | ATAGTTTTGGATGAAGCACA+AGG | - | chr2.1:62276605-62276624 | MS.gene003223:CDS | 35.0% |
| !!! | CAGGCATTTTTTGATTCAGT+TGG | - | chr2.1:62275922-62275941 | MS.gene003223:intron | 35.0% |
| !!! | GCCGTAATATGCGTTTTTTT+AGG | - | chr2.1:62275045-62275064 | MS.gene003223:intron | 35.0% |
| !!! | TGATGGGTTGTTTTTATGTG+TGG | - | chr2.1:62275783-62275802 | MS.gene003223:intron | 35.0% |
| AAAAAATGCCTGCAGAACTG+AGG | + | chr2.1:62275914-62275933 | None:intergenic | 40.0% | |
| AAAACAAAAGTCGCACAAGG+CGG | - | chr2.1:62276348-62276367 | MS.gene003223:CDS | 40.0% | |
| AGAAAGTTTAGCCGAGTTCA+AGG | - | chr2.1:62275178-62275197 | MS.gene003223:intron | 40.0% | |
| AGGGCCGAGACAAATAAATA+AGG | + | chr2.1:62277237-62277256 | None:intergenic | 40.0% | |
| ATATTTAGTGAGACTGGGGA+AGG | + | chr2.1:62277257-62277276 | None:intergenic | 40.0% | |
| CAACATACCTGTTCAGACAA+AGG | + | chr2.1:62277373-62277392 | None:intergenic | 40.0% | |
| CACATTAGGACTTTGTTGGT+GGG | + | chr2.1:62275238-62275257 | None:intergenic | 40.0% | |
| CACCAACAAAGTCCTAATGT+GGG | - | chr2.1:62275237-62275256 | MS.gene003223:intron | 40.0% | |
| CCAAACTCTAAACCAATCAG+GGG | + | chr2.1:62276524-62276543 | None:intergenic | 40.0% | |
| GACCATGACTTAACCTTAGA+AGG | + | chr2.1:62276680-62276699 | None:intergenic | 40.0% | |
| GACTTAGTGTCTGCAAAAGA+AGG | + | chr2.1:62277462-62277481 | None:intergenic | 40.0% | |
| GATGAAGCACAAGGTTACAT+GGG | - | chr2.1:62276614-62276633 | MS.gene003223:CDS | 40.0% | |
| GCATGAGTCTTTCATTTCCT+AGG | - | chr2.1:62277163-62277182 | MS.gene003223:intron | 40.0% | |
| GGAAGTTGAGAAAAAAGGCT+TGG | + | chr2.1:62277074-62277093 | None:intergenic | 40.0% | |
| GTCCAAACTCTAAACCAATC+AGG | + | chr2.1:62276526-62276545 | None:intergenic | 40.0% | |
| GTGTTATCAATCTGTCACCA+TGG | - | chr2.1:62276003-62276022 | MS.gene003223:intron | 40.0% | |
| GTTGGATCAAACGAAAAAGG+AGG | + | chr2.1:62274928-62274947 | None:intergenic | 40.0% | |
| TATCAGAAAACAACCTGAGC+AGG | + | chr2.1:62275951-62275970 | None:intergenic | 40.0% | |
| TATCTTATCCTCAGTTCTGC+AGG | - | chr2.1:62275903-62275922 | MS.gene003223:intron | 40.0% | |
| TATTTAGTGAGACTGGGGAA+GGG | + | chr2.1:62277256-62277275 | None:intergenic | 40.0% | |
| TCAACTCCTTACCAATTGGA+CGG | - | chr2.1:62275296-62275315 | MS.gene003223:intron | 40.0% | |
| TCAATCTGTCACCATGGAAT+TGG | - | chr2.1:62276009-62276028 | MS.gene003223:intron | 40.0% | |
| TGACTTAACCTTAGAAGGCA+TGG | + | chr2.1:62276675-62276694 | None:intergenic | 40.0% | |
| TGAGTCAACTCCTTACCAAT+TGG | - | chr2.1:62275292-62275311 | MS.gene003223:intron | 40.0% | |
| ! | CATGCAGCAGTATTTAGCTT+AGG | - | chr2.1:62274890-62274909 | MS.gene003223:CDS | 40.0% |
| ! | GCCTCTGGAGGAAAAAAAAT+GGG | + | chr2.1:62276062-62276081 | None:intergenic | 40.0% |
| ! | TCAGAGGGAAATGTCTTTTC+TGG | + | chr2.1:62276942-62276961 | None:intergenic | 40.0% |
| ! | TGCCTCTGGAGGAAAAAAAA+TGG | + | chr2.1:62276063-62276082 | None:intergenic | 40.0% |
| ! | TTTTCTGGACAAATGCGGTT+TGG | + | chr2.1:62276927-62276946 | None:intergenic | 40.0% |
| !! | ACAAGGGTTTTTAAGGGTGA+AGG | + | chr2.1:62276971-62276990 | None:intergenic | 40.0% |
| !! | CCATTAGTTTGTGGAAGTTG+GGG | - | chr2.1:62275347-62275366 | MS.gene003223:intron | 40.0% |
| !! | TGCCTTCTAAGGTTAAGTCA+TGG | - | chr2.1:62276675-62276694 | MS.gene003223:CDS | 40.0% |
| !!! | GTTGTTTTTATGTGTGGCAG+CGG | - | chr2.1:62275789-62275808 | MS.gene003223:intron | 40.0% |
| !!! | TCCCATTTTTTTTCCTCCAG+AGG | - | chr2.1:62276058-62276077 | MS.gene003223:intron | 40.0% |
| AGAAGGGGTGACCTAAATCT+TGG | - | chr2.1:62276743-62276762 | MS.gene003223:intron | 45.0% | |
| AGGGTGAAGGATAAGATCAG+AGG | + | chr2.1:62276958-62276977 | None:intergenic | 45.0% | |
| AGGTTACATGGGTGTCTCTT+TGG | - | chr2.1:62276625-62276644 | MS.gene003223:CDS | 45.0% | |
| CCACATTAGGACTTTGTTGG+TGG | + | chr2.1:62275239-62275258 | None:intergenic | 45.0% | |
| CCACCAACAAAGTCCTAATG+TGG | - | chr2.1:62275236-62275255 | MS.gene003223:intron | 45.0% | |
| CCCCAACTTCCACAAACTAA+TGG | + | chr2.1:62275350-62275369 | None:intergenic | 45.0% | |
| GAAATCACAATGGAGCAGCA+AGG | + | chr2.1:62276861-62276880 | None:intergenic | 45.0% | |
| GAATACCTGATACGTACCTG+AGG | - | chr2.1:62276431-62276450 | MS.gene003223:CDS | 45.0% | |
| GATTTAGGTCACCCCTTCTA+AGG | + | chr2.1:62276742-62276761 | None:intergenic | 45.0% | |
| GCAGACACTAAGTCAAGCAT+TGG | - | chr2.1:62277468-62277487 | MS.gene003223:intron | 45.0% | |
| GCAGGGTATGTCATTCTCAT+AGG | - | chr2.1:62276151-62276170 | MS.gene003223:CDS | 45.0% | |
| GCTTCCTTTGCACTATTGGT+TGG | + | chr2.1:62275607-62275626 | None:intergenic | 45.0% | |
| GGATGAAGCACAAGGTTACA+TGG | - | chr2.1:62276613-62276632 | MS.gene003223:CDS | 45.0% | |
| GGCTCTATAAGCCTTGAACT+CGG | + | chr2.1:62275192-62275211 | None:intergenic | 45.0% | |
| GGGTGAAGGATAAGATCAGA+GGG | + | chr2.1:62276957-62276976 | None:intergenic | 45.0% | |
| GTCAAGGACTTCCAATTCCA+TGG | + | chr2.1:62276023-62276042 | None:intergenic | 45.0% | |
| GTGCTAGAACTATGGATGTG+CGG | + | chr2.1:62276839-62276858 | None:intergenic | 45.0% | |
| GTGGTCCTCAATTGCAATTG+TGG | - | chr2.1:62275023-62275042 | MS.gene003223:intron | 45.0% | |
| TACGGCCACAATTGCAATTG+AGG | + | chr2.1:62275031-62275050 | None:intergenic | 45.0% | |
| TGAAACCTCAGGTACGTATC+AGG | + | chr2.1:62276439-62276458 | None:intergenic | 45.0% | |
| TGCCCACATTAGGACTTTGT+TGG | + | chr2.1:62275242-62275261 | None:intergenic | 45.0% | |
| TTGGCCAACCAATAGTGCAA+AGG | - | chr2.1:62275600-62275619 | MS.gene003223:intron | 45.0% | |
| ! | TTTTTCCTCCAGAGGCAATG+TGG | - | chr2.1:62276066-62276085 | MS.gene003223:intron | 45.0% |
| !! | CCCCTGATTGGTTTAGAGTT+TGG | - | chr2.1:62276521-62276540 | MS.gene003223:intron | 45.0% |
| AAAGTCCTAATGTGGGCAGC+GGG | - | chr2.1:62275244-62275263 | MS.gene003223:intron | 50.0% | |
| AAGACCAATGCTCGCACTGA+AGG | - | chr2.1:62275658-62275677 | MS.gene003223:intron | 50.0% | |
| CAAAGTCCTAATGTGGGCAG+CGG | - | chr2.1:62275243-62275262 | MS.gene003223:intron | 50.0% | |
| CAGAAAACAACCTGAGCAGG+AGG | + | chr2.1:62275948-62275967 | None:intergenic | 50.0% | |
| CAGAGGCAATGTGGACAAGA+AGG | - | chr2.1:62276075-62276094 | MS.gene003223:intron | 50.0% | |
| CGACATTGCAACCGCAATTG+TGG | - | chr2.1:62275077-62275096 | MS.gene003223:intron | 50.0% | |
| CTGAAGTCAGTCCGTCCAAT+TGG | + | chr2.1:62275310-62275329 | None:intergenic | 50.0% | |
| CTTCTTGTCCACATTGCCTC+TGG | + | chr2.1:62276077-62276096 | None:intergenic | 50.0% | |
| GGAAAATGCGGCCACAATTG+CGG | + | chr2.1:62275091-62275110 | None:intergenic | 50.0% | |
| GGGGTGACCTAAATCTTGGA+TGG | - | chr2.1:62276747-62276766 | MS.gene003223:intron | 50.0% | |
| GTCAGTCCGTCCAATTGGTA+AGG | + | chr2.1:62275305-62275324 | None:intergenic | 50.0% | |
| GTGAGTGCTTCCTTGTCTAG+AGG | - | chr2.1:62275680-62275699 | MS.gene003223:intron | 50.0% | |
| TGCAAGATGTTCCCTAGCTG+AGG | + | chr2.1:62277494-62277513 | None:intergenic | 50.0% | |
| TGGAGCTCCTTTGTCTGAAC+AGG | - | chr2.1:62277363-62277382 | MS.gene003223:intron | 50.0% | |
| ! | CTCGTTTTCGTCATCACTCC+CGG | + | chr2.1:62275881-62275900 | None:intergenic | 50.0% |
| ! | GAGTTGACTCATACCCTGCA+AGG | + | chr2.1:62275283-62275302 | None:intergenic | 50.0% |
| ! | GCAGCAAGGTGCTAGAACTA+TGG | + | chr2.1:62276847-62276866 | None:intergenic | 50.0% |
| ! | GCTCTAAGCCATGCCTTCTA+AGG | - | chr2.1:62276664-62276683 | MS.gene003223:CDS | 50.0% |
| ! | TGTGGACAAGAAGGAAGCAC+TGG | - | chr2.1:62276084-62276103 | MS.gene003223:intron | 50.0% |
| !! | ACCAATCAGGGGCATCTAAC+TGG | + | chr2.1:62276513-62276532 | None:intergenic | 50.0% |
| !! | GAAGGAAGCACTGGAGAACT+TGG | - | chr2.1:62276093-62276112 | MS.gene003223:intron | 50.0% |
| !! | TCAAGCATTGGCCTCAGCTA+GGG | - | chr2.1:62277480-62277499 | MS.gene003223:intron | 50.0% |
| ACTCATACCCTGCAAGGCGT+AGG | + | chr2.1:62275277-62275296 | None:intergenic | 55.0% | |
| AGCTGAACCTACGCCTTGCA+GGG | - | chr2.1:62275267-62275286 | MS.gene003223:intron | 55.0% | |
| CTCACCTTCAGTGCGAGCAT+TGG | + | chr2.1:62275665-62275684 | None:intergenic | 55.0% | |
| CTTGTCCACATTGCCTCTGG+AGG | + | chr2.1:62276074-62276093 | None:intergenic | 55.0% | |
| GCCAGTTAGATGCCCCTGAT+TGG | - | chr2.1:62276509-62276528 | MS.gene003223:intron | 55.0% | |
| ! | ATTCAGTTGGCCTCCTGCTC+AGG | - | chr2.1:62275935-62275954 | MS.gene003223:intron | 55.0% |
| !! | GTCAAGCATTGGCCTCAGCT+AGG | - | chr2.1:62277479-62277498 | MS.gene003223:intron | 55.0% |
| GAGCTGAACCTACGCCTTGC+AGG | - | chr2.1:62275266-62275285 | MS.gene003223:intron | 60.0% | |
| GGATTCTGACGGGAGACGTG+TGG | - | chr2.1:62275555-62275574 | MS.gene003223:intron | 60.0% | |
| CAGCTCCCGCTGCCCACATT+AGG | + | chr2.1:62275252-62275271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 62274739 | 62277531 | 62274739 | ID=MS.gene003223 |
| chr2.1 | mRNA | 62274739 | 62277531 | 62274739 | ID=MS.gene003223.t1;Parent=MS.gene003223 |
| chr2.1 | exon | 62277529 | 62277531 | 62277529 | ID=MS.gene003223.t1.exon1;Parent=MS.gene003223.t1 |
| chr2.1 | CDS | 62277529 | 62277531 | 62277529 | ID=cds.MS.gene003223.t1;Parent=MS.gene003223.t1 |
| chr2.1 | exon | 62276591 | 62276750 | 62276591 | ID=MS.gene003223.t1.exon2;Parent=MS.gene003223.t1 |
| chr2.1 | CDS | 62276591 | 62276750 | 62276591 | ID=cds.MS.gene003223.t1;Parent=MS.gene003223.t1 |
| chr2.1 | exon | 62276314 | 62276461 | 62276314 | ID=MS.gene003223.t1.exon3;Parent=MS.gene003223.t1 |
| chr2.1 | CDS | 62276314 | 62276461 | 62276314 | ID=cds.MS.gene003223.t1;Parent=MS.gene003223.t1 |
| chr2.1 | exon | 62276115 | 62276192 | 62276115 | ID=MS.gene003223.t1.exon4;Parent=MS.gene003223.t1 |
| chr2.1 | CDS | 62276115 | 62276192 | 62276115 | ID=cds.MS.gene003223.t1;Parent=MS.gene003223.t1 |
| chr2.1 | exon | 62274886 | 62274970 | 62274886 | ID=MS.gene003223.t1.exon5;Parent=MS.gene003223.t1 |
| chr2.1 | CDS | 62274886 | 62274970 | 62274886 | ID=cds.MS.gene003223.t1;Parent=MS.gene003223.t1 |
| chr2.1 | exon | 62274739 | 62274798 | 62274739 | ID=MS.gene003223.t1.exon6;Parent=MS.gene003223.t1 |
| chr2.1 | CDS | 62274739 | 62274798 | 62274739 | ID=cds.MS.gene003223.t1;Parent=MS.gene003223.t1 |
| Gene Sequence |
| Protein sequence |
