Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30333.t1 | XP_013444380.1 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.60E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30333.t1 | Q8H1F4 | 74.7 | 178 | 45 | 0 | 3 | 180 | 4 | 181 | 8.8e-69 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30333.t1 | Q5QQ32 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.3e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30333 | MS.gene063166 | PPI |
| MS.gene30333 | MS.gene50077 | PPI |
| MS.gene07800 | MS.gene30333 | PPI |
| MS.gene30333 | MS.gene056700 | PPI |
| MS.gene30333 | MS.gene45686 | PPI |
| MS.gene30333 | MS.gene68223 | PPI |
| MS.gene003764 | MS.gene30333 | PPI |
| MS.gene30333 | MS.gene74768 | PPI |
| MS.gene30333 | MS.gene064893 | PPI |
| MS.gene30333 | MS.gene003223 | PPI |
| MS.gene30333 | MS.gene74608 | PPI |
| MS.gene30333 | MS.gene011220 | PPI |
| MS.gene30333 | MS.gene043279 | PPI |
| MS.gene30333 | MS.gene79635 | PPI |
| MS.gene30333 | MS.gene02789 | PPI |
| MS.gene30333 | MS.gene02023 | PPI |
| MS.gene30333 | MS.gene021666 | PPI |
| MS.gene74768 | MS.gene30333 | PPI |
| MS.gene014282 | MS.gene30333 | PPI |
| MS.gene30333 | MS.gene37394 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30333.t1 | MTR_8g017630 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.38e-131 | 365 |
| MS.gene30333.t1 | MTR_0350s0010 | 95.930 | 172 | 6 | 1 | 10 | 180 | 49 | 220 | 1.39e-117 | 332 |
| MS.gene30333.t1 | MTR_2g028750 | 75.862 | 174 | 42 | 0 | 6 | 179 | 31 | 204 | 9.70e-93 | 268 |
| MS.gene30333.t1 | MTR_7g009640 | 85.075 | 134 | 20 | 0 | 10 | 143 | 2 | 135 | 7.49e-81 | 236 |
| MS.gene30333.t1 | MTR_8g018030 | 87.302 | 63 | 8 | 0 | 3 | 65 | 4 | 66 | 3.21e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30333.t1 | AT4G08520 | 74.302 | 179 | 46 | 0 | 2 | 180 | 3 | 181 | 3.54e-96 | 276 |
| MS.gene30333.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene30333.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene30333.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene30333.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 86 | 259 | 3.42e-93 | 272 |
| MS.gene30333.t1 | AT1G60970 | 74.138 | 174 | 45 | 0 | 6 | 179 | 3 | 176 | 1.88e-92 | 267 |
| MS.gene30333.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
| MS.gene30333.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
Find 31 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATCCGCATCCATGTTA+TGG | 0.366987 | 8.1:+80043895 | None:intergenic |
| GCTAACTTTGAACTGTTTGT+TGG | 0.367588 | 8.1:+80045336 | None:intergenic |
| TGCCTTGACGAGATCGTTGA+TGG | 0.379967 | 8.1:-80044053 | MS.gene30333:CDS |
| CGCATTTGTCTTAACAGTCT+TGG | 0.382190 | 8.1:+80045293 | None:intergenic |
| AGGATTATACTTGAAACAAA+TGG | 0.413540 | 8.1:-80043945 | MS.gene30333:CDS |
| ACCATAAATACCTCAGCAAA+AGG | 0.415565 | 8.1:+80044198 | None:intergenic |
| GACTTGCATTTCTTTGTCAC+TGG | 0.420388 | 8.1:-80044284 | MS.gene30333:CDS |
| AAACATTACCTGCTCTGATA+AGG | 0.429223 | 8.1:+80043872 | None:intergenic |
| AACATTACCTGCTCTGATAA+GGG | 0.439938 | 8.1:+80043873 | None:intergenic |
| AGCATCCGCATCCATGTTAT+GGG | 0.455423 | 8.1:+80043896 | None:intergenic |
| AAGTGAGGCACTTGAGAACT+TGG | 0.464349 | 8.1:-80044090 | MS.gene30333:CDS |
| AGTTCTTGTGAAAGTGTCTC+TGG | 0.483853 | 8.1:+80043709 | None:intergenic |
| ATTCTTCTCTTAGACTCTGA+AGG | 0.515428 | 8.1:-80045396 | MS.gene30333:CDS |
| TTGCATTTCTTTGTCACTGG+TGG | 0.522189 | 8.1:-80044281 | MS.gene30333:CDS |
| AAGACAAATGCGCGGACAGA+AGG | 0.541218 | 8.1:-80045282 | MS.gene30333:intron |
| TTCTTCTCTTAGACTCTGAA+GGG | 0.549432 | 8.1:-80045395 | MS.gene30333:CDS |
| TGCAGACACTAACTCAGGCA+TGG | 0.549441 | 8.1:-80043739 | MS.gene30333:intron |
| AAAAGTTACCTCCCATAACA+TGG | 0.559199 | 8.1:-80043907 | MS.gene30333:CDS |
| GATATTGCAGACACTAACTC+AGG | 0.562131 | 8.1:-80043744 | MS.gene30333:intron |
| CCATAAATACCTCAGCAAAA+GGG | 0.565426 | 8.1:+80044199 | None:intergenic |
| TCAAGTATTACTCAGATGAC+TGG | 0.569025 | 8.1:-80045359 | MS.gene30333:CDS |
| GGATGCTCCCTTATCAGAGC+AGG | 0.580058 | 8.1:-80043880 | MS.gene30333:intron |
| GCAGACACTAACTCAGGCAT+GGG | 0.586167 | 8.1:-80043738 | MS.gene30333:intron |
| TACCTCCCATAACATGGATG+CGG | 0.591768 | 8.1:-80043901 | MS.gene30333:CDS |
| CTCCATCAACGATCTCGTCA+AGG | 0.600844 | 8.1:+80044051 | None:intergenic |
| CTTGACGAGATCGTTGATGG+AGG | 0.615640 | 8.1:-80044050 | MS.gene30333:CDS |
| TTGACGAGATCGTTGATGGA+GGG | 0.639948 | 8.1:-80044049 | MS.gene30333:intron |
| ATCCGCATCCATGTTATGGG+AGG | 0.659855 | 8.1:+80043899 | None:intergenic |
| AGACTCTGAAGGGAAGCGTG+TGG | 0.683799 | 8.1:-80045385 | MS.gene30333:CDS |
| GAGCAATGTTGACAAAAGTG+AGG | 0.698747 | 8.1:-80044105 | MS.gene30333:CDS |
| AGACTGTTAAGACAAATGCG+CGG | 0.802310 | 8.1:-80045290 | MS.gene30333:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATACATTCAAATAA+AGG | + | chr8.1:80045685-80045704 | None:intergenic | 10.0% |
| !! | AATCAGTTAATATAAATCAA+AGG | + | chr8.1:80045761-80045780 | None:intergenic | 15.0% |
| !! | ATCAGTTAATATAAATCAAA+GGG | + | chr8.1:80045760-80045779 | None:intergenic | 15.0% |
| !! | AAACTAAAATCTGATGATTA+GGG | - | chr8.1:80044283-80044302 | MS.gene30333:CDS | 20.0% |
| !! | AAAGAATAAATAAACTTTCG+TGG | + | chr8.1:80046393-80046412 | None:intergenic | 20.0% |
| !! | ATTGTAATCAATTTACGAAT+TGG | - | chr8.1:80043850-80043869 | MS.gene30333:intron | 20.0% |
| !! | TAAACACAAATCTTTAACAT+AGG | + | chr8.1:80044335-80044354 | None:intergenic | 20.0% |
| !! | TCAGTTAATATAAATCAAAG+GGG | + | chr8.1:80045759-80045778 | None:intergenic | 20.0% |
| !! | TTGTAATCAATTTACGAATT+GGG | - | chr8.1:80043851-80043870 | MS.gene30333:intron | 20.0% |
| !!! | ACAGAAATAAACGTTTTAAA+CGG | + | chr8.1:80044169-80044188 | None:intergenic | 20.0% |
| !!! | ACTGTAATTTTCAAAAATAC+TGG | + | chr8.1:80044902-80044921 | None:intergenic | 20.0% |
| !!! | AGAAGAATGTTTTTTATTGA+AGG | + | chr8.1:80044974-80044993 | None:intergenic | 20.0% |
| !!! | ATTGATTTTCAACATTTGAA+TGG | - | chr8.1:80045828-80045847 | MS.gene30333:intron | 20.0% |
| !!! | TAGCAAATTTTTCTAAGAAT+TGG | - | chr8.1:80044215-80044234 | MS.gene30333:CDS | 20.0% |
| !!! | TGAATCATATTTTAGGAATT+GGG | - | chr8.1:80044022-80044041 | MS.gene30333:intron | 20.0% |
| !!! | TTAAAATCCTTTTTTTCTGT+CGG | - | chr8.1:80045294-80045313 | MS.gene30333:CDS | 20.0% |
| ! | AATATAACAACAGATACCAA+TGG | + | chr8.1:80045948-80045967 | None:intergenic | 25.0% |
| ! | AGGATTATACTTGAAACAAA+TGG | - | chr8.1:80046437-80046456 | MS.gene30333:intron | 25.0% |
| ! | ATTGGTTATAATTGATGTGA+AGG | - | chr8.1:80044233-80044252 | MS.gene30333:CDS | 25.0% |
| ! | CAATTCTTAACCTCATAATA+TGG | - | chr8.1:80045344-80045363 | MS.gene30333:CDS | 25.0% |
| ! | CATATTATGAGGTTAAGAAT+TGG | + | chr8.1:80045346-80045365 | None:intergenic | 25.0% |
| ! | GAAACTAAAATCTGATGATT+AGG | - | chr8.1:80044282-80044301 | MS.gene30333:CDS | 25.0% |
| ! | GGAAAAAGAAAATAACATGT+TGG | + | chr8.1:80044657-80044676 | None:intergenic | 25.0% |
| ! | GGTTATATTATTATGCAGTT+TGG | - | chr8.1:80045263-80045282 | MS.gene30333:intron | 25.0% |
| ! | TATTATTATGCAGTTTGGTT+TGG | - | chr8.1:80045268-80045287 | MS.gene30333:intron | 25.0% |
| ! | TCTTATTAGTTCCTAATTAC+TGG | + | chr8.1:80044747-80044766 | None:intergenic | 25.0% |
| ! | TTCATATTGTAACATCTGTA+GGG | - | chr8.1:80044941-80044960 | MS.gene30333:intron | 25.0% |
| ! | TTCCTAAAATATGATTCACA+TGG | + | chr8.1:80044020-80044039 | None:intergenic | 25.0% |
| ! | TTGGTTATAATTGATGTGAA+GGG | - | chr8.1:80044234-80044253 | MS.gene30333:CDS | 25.0% |
| ! | TTTCATATTGTAACATCTGT+AGG | - | chr8.1:80044940-80044959 | MS.gene30333:intron | 25.0% |
| !! | AACCATGTGAATCATATTTT+AGG | - | chr8.1:80044015-80044034 | MS.gene30333:intron | 25.0% |
| !! | AGTTTTGCAAATTTGAAAAG+GGG | - | chr8.1:80044869-80044888 | MS.gene30333:intron | 25.0% |
| !! | CAGTTTTGCAAATTTGAAAA+GGG | - | chr8.1:80044868-80044887 | MS.gene30333:intron | 25.0% |
| !! | GAAAATTGCTCTTTTATGAA+TGG | - | chr8.1:80044784-80044803 | MS.gene30333:intron | 25.0% |
| !! | TCAGTTTTGCAAATTTGAAA+AGG | - | chr8.1:80044867-80044886 | MS.gene30333:intron | 25.0% |
| !! | TTTTTCTTTTTCTGTTGTGA+TGG | - | chr8.1:80043812-80043831 | MS.gene30333:intron | 25.0% |
| !!! | AGATATGCAGTTTTGTTTAT+AGG | - | chr8.1:80045242-80045261 | MS.gene30333:intron | 25.0% |
| !!! | AGTTTCTTTTTTGTGTTTGT+TGG | - | chr8.1:80044054-80044073 | MS.gene30333:CDS | 25.0% |
| !!! | CTTTTAACACCTCATTTTTT+TGG | - | chr8.1:80046409-80046428 | MS.gene30333:intron | 25.0% |
| !!! | GGTTATGATTTTTTTTGTCT+TGG | - | chr8.1:80044260-80044279 | MS.gene30333:CDS | 25.0% |
| !!! | GTGAATCATATTTTAGGAAT+TGG | - | chr8.1:80044021-80044040 | MS.gene30333:intron | 25.0% |
| !!! | TCATTTTATCATTTAGCTCA+AGG | + | chr8.1:80045385-80045404 | None:intergenic | 25.0% |
| AAAAGTCAATGTCAGATTGA+AGG | + | chr8.1:80046617-80046636 | None:intergenic | 30.0% | |
| AACAAGTTAAGAAATAGACC+TGG | - | chr8.1:80045549-80045568 | MS.gene30333:intron | 30.0% | |
| ACATGGACACTGATAATAAT+TGG | + | chr8.1:80044678-80044697 | None:intergenic | 30.0% | |
| ACGTCTTTGATTAGAATTGT+CGG | + | chr8.1:80044625-80044644 | None:intergenic | 30.0% | |
| ATAGTGTCAATTACAGATAG+TGG | + | chr8.1:80044529-80044548 | None:intergenic | 30.0% | |
| ATAGTTCATAGCCAGTAATT+AGG | - | chr8.1:80044733-80044752 | MS.gene30333:intron | 30.0% | |
| ATCTGATGATTAGGGATAAT+AGG | - | chr8.1:80044291-80044310 | MS.gene30333:CDS | 30.0% | |
| ATGAATTCCGACAGAAAAAA+AGG | + | chr8.1:80045304-80045323 | None:intergenic | 30.0% | |
| ATTGCTTTACGTCAAAACTA+TGG | - | chr8.1:80043952-80043971 | MS.gene30333:intron | 30.0% | |
| TATAATTGATGTGAAGGGAA+AGG | - | chr8.1:80044239-80044258 | MS.gene30333:CDS | 30.0% | |
| TCTATCTCAGTCATATCAAT+TGG | - | chr8.1:80045452-80045471 | MS.gene30333:intron | 30.0% | |
| TTCGTGGAAAAGAAAATTTG+TGG | + | chr8.1:80046377-80046396 | None:intergenic | 30.0% | |
| TTGCTTTACGTCAAAACTAT+GGG | - | chr8.1:80043953-80043972 | MS.gene30333:intron | 30.0% | |
| TTGGCTAAGAATAGAACTAT+TGG | + | chr8.1:80045327-80045346 | None:intergenic | 30.0% | |
| TTTGTCAAACATCCTTTCTA+GGG | - | chr8.1:80045628-80045647 | MS.gene30333:intron | 30.0% | |
| ! | ACAAAGCACTTCAAAATTGA+AGG | + | chr8.1:80045613-80045632 | None:intergenic | 30.0% |
| ! | ATTTTGTCATCTGTTCTTCA+AGG | - | chr8.1:80046143-80046162 | MS.gene30333:intron | 30.0% |
| ! | GAAGTGATTTAACTTCGAAT+GGG | - | chr8.1:80044103-80044122 | MS.gene30333:CDS | 30.0% |
| ! | TGAAGTGATTTAACTTCGAA+TGG | - | chr8.1:80044102-80044121 | MS.gene30333:CDS | 30.0% |
| !! | AGTGATTGTTTGTTATGCTT+TGG | - | chr8.1:80044189-80044208 | MS.gene30333:intron | 30.0% |
| !! | TATGTTACTTTCTGTTCTGA+TGG | - | chr8.1:80043986-80044005 | MS.gene30333:intron | 30.0% |
| !! | TCTGTTTTTCGTTTGTTTCT+TGG | - | chr8.1:80043887-80043906 | MS.gene30333:CDS | 30.0% |
| !! | TTTTAAACGGATCTGAAATG+AGG | + | chr8.1:80044156-80044175 | None:intergenic | 30.0% |
| !!! | CTGCATTTTGATTTTCCAAA+CGG | + | chr8.1:80045903-80045922 | None:intergenic | 30.0% |
| !!! | TCTTTTTTGTGTTTGTTGGT+TGG | - | chr8.1:80044058-80044077 | MS.gene30333:CDS | 30.0% |
| !!! | TGCATTTTGATTTTCCAAAC+GGG | + | chr8.1:80045902-80045921 | None:intergenic | 30.0% |
| !!! | TGTTTTTTATTGAAGGACAC+AGG | + | chr8.1:80044967-80044986 | None:intergenic | 30.0% |
| AAAAGTTACCTCCCATAACA+TGG | - | chr8.1:80046475-80046494 | MS.gene30333:intron | 35.0% | |
| AAACATTACCTGCTCTGATA+AGG | + | chr8.1:80046513-80046532 | None:intergenic | 35.0% | |
| AACACTCTTCAACATACCAT+TGG | - | chr8.1:80045929-80045948 | MS.gene30333:intron | 35.0% | |
| AACATTACCTGCTCTGATAA+GGG | + | chr8.1:80046512-80046531 | None:intergenic | 35.0% | |
| AATTGAAGGCAGTGTCAAAA+AGG | + | chr8.1:80045599-80045618 | None:intergenic | 35.0% | |
| ACCATAAATACCTCAGCAAA+AGG | + | chr8.1:80046187-80046206 | None:intergenic | 35.0% | |
| ACGAAATACCAACGGTATTA+TGG | + | chr8.1:80045731-80045750 | None:intergenic | 35.0% | |
| ATAAAAGAGCAAACATGCCA+GGG | + | chr8.1:80045873-80045892 | None:intergenic | 35.0% | |
| ATTCTAATCAAAGACGTGTC+TGG | - | chr8.1:80044628-80044647 | MS.gene30333:intron | 35.0% | |
| ATTCTTCTCTTAGACTCTGA+AGG | - | chr8.1:80044986-80045005 | MS.gene30333:intron | 35.0% | |
| CATATTTGTGTCCCATTTAC+AGG | - | chr8.1:80046255-80046274 | MS.gene30333:intron | 35.0% | |
| CCATAAATACCTCAGCAAAA+GGG | + | chr8.1:80046186-80046205 | None:intergenic | 35.0% | |
| CTAACCTAAATAGCGTATCA+CGG | + | chr8.1:80044440-80044459 | None:intergenic | 35.0% | |
| CTTTGTCAAACATCCTTTCT+AGG | - | chr8.1:80045627-80045646 | MS.gene30333:intron | 35.0% | |
| GACTTAAGTAAAGAATGACC+AGG | + | chr8.1:80045570-80045589 | None:intergenic | 35.0% | |
| GCTAACTTTGAACTGTTTGT+TGG | + | chr8.1:80045049-80045068 | None:intergenic | 35.0% | |
| GTGTCTTGCATATACGTAAA+CGG | - | chr8.1:80045474-80045493 | MS.gene30333:intron | 35.0% | |
| TAAGATAGAGAAGCTTACGT+TGG | + | chr8.1:80043707-80043726 | None:intergenic | 35.0% | |
| TAATAGGATGAACTTTGCTG+TGG | - | chr8.1:80044307-80044326 | MS.gene30333:CDS | 35.0% | |
| TCAACATTGCTCCTGTAAAT+GGG | + | chr8.1:80046269-80046288 | None:intergenic | 35.0% | |
| TCAAGTATTACTCAGATGAC+TGG | - | chr8.1:80045023-80045042 | MS.gene30333:intron | 35.0% | |
| TCAGTGATGTATGCTTTCTA+TGG | - | chr8.1:80046557-80046576 | MS.gene30333:intron | 35.0% | |
| TCCTTCAAGCCAAAAAAATG+AGG | + | chr8.1:80046421-80046440 | None:intergenic | 35.0% | |
| TTCTTCTCTTAGACTCTGAA+GGG | - | chr8.1:80044987-80045006 | MS.gene30333:intron | 35.0% | |
| TTGCAAATTTGAAAAGGGGA+GGG | - | chr8.1:80044873-80044892 | MS.gene30333:intron | 35.0% | |
| TTGTCAAATAGCAGCTATAG+CGG | - | chr8.1:80044464-80044483 | MS.gene30333:intron | 35.0% | |
| TTTCGACTAATACCCTAGAA+AGG | + | chr8.1:80045643-80045662 | None:intergenic | 35.0% | |
| TTTGCAAATTTGAAAAGGGG+AGG | - | chr8.1:80044872-80044891 | MS.gene30333:intron | 35.0% | |
| ! | GTTATGGGAGGTAACTTTTT+CGG | + | chr8.1:80046474-80046493 | None:intergenic | 35.0% |
| !! | AACTTGTTATGCAGCAGATA+GGG | + | chr8.1:80045537-80045556 | None:intergenic | 35.0% |
| !! | TAACTTGTTATGCAGCAGAT+AGG | + | chr8.1:80045538-80045557 | None:intergenic | 35.0% |
| !!! | ACCTCATTTTTTTGGCTTGA+AGG | - | chr8.1:80046417-80046436 | MS.gene30333:intron | 35.0% |
| !!! | GCATTTTGATTTTCCAAACG+GGG | + | chr8.1:80045901-80045920 | None:intergenic | 35.0% |
| !!! | GTAACTTTTTCGGCAATAAG+AGG | + | chr8.1:80046464-80046483 | None:intergenic | 35.0% |
| !!! | TGTTTTAGTGTAGTACCTAG+TGG | - | chr8.1:80045181-80045200 | MS.gene30333:intron | 35.0% |
| AGACCAGTGTTGTCAAATAG+CGG | - | chr8.1:80044375-80044394 | MS.gene30333:intron | 40.0% | |
| AGACTGTTAAGACAAATGCG+CGG | - | chr8.1:80045092-80045111 | MS.gene30333:intron | 40.0% | |
| CATAATATGGTAAGTCGTGG+TGG | - | chr8.1:80045357-80045376 | MS.gene30333:CDS | 40.0% | |
| CCACGACTTACCATATTATG+AGG | + | chr8.1:80045357-80045376 | None:intergenic | 40.0% | |
| CCTCATAATATGGTAAGTCG+TGG | - | chr8.1:80045354-80045373 | MS.gene30333:CDS | 40.0% | |
| CGCATTTGTCTTAACAGTCT+TGG | + | chr8.1:80045092-80045111 | None:intergenic | 40.0% | |
| GACTTGCATTTCTTTGTCAC+TGG | - | chr8.1:80046098-80046117 | MS.gene30333:intron | 40.0% | |
| GAGCAATGTTGACAAAAGTG+AGG | - | chr8.1:80046277-80046296 | MS.gene30333:intron | 40.0% | |
| GATAAAAGAGCAAACATGCC+AGG | + | chr8.1:80045874-80045893 | None:intergenic | 40.0% | |
| GATATTGCAGACACTAACTC+AGG | - | chr8.1:80046638-80046657 | MS.gene30333:intron | 40.0% | |
| GGTTGGATCGTTTAGTGATT+TGG | - | chr8.1:80044075-80044094 | MS.gene30333:CDS | 40.0% | |
| GTCAACATTGCTCCTGTAAA+TGG | + | chr8.1:80046270-80046289 | None:intergenic | 40.0% | |
| TGTTCCGTGATACGCTATTT+AGG | - | chr8.1:80044433-80044452 | MS.gene30333:intron | 40.0% | |
| TTGCATTTCTTTGTCACTGG+TGG | - | chr8.1:80046101-80046120 | MS.gene30333:intron | 40.0% | |
| TTTAGTGTAGTACCTAGTGG+CGG | - | chr8.1:80045184-80045203 | MS.gene30333:intron | 40.0% | |
| ! | CACAAGACATTTGCTAGTAG+TGG | - | chr8.1:80045789-80045808 | MS.gene30333:intron | 40.0% |
| ! | GTGTCAATTACAGATAGTGG+CGG | + | chr8.1:80044526-80044545 | None:intergenic | 40.0% |
| ! | TCTTTTATCTGTTCCCCGTT+TGG | - | chr8.1:80045885-80045904 | MS.gene30333:intron | 40.0% |
| !! | AGTTCTTGTGAAAGTGTCTC+TGG | + | chr8.1:80046676-80046695 | None:intergenic | 40.0% |
| !! | ATTGTCGTACTTGGTGTCAT+TGG | - | chr8.1:80044701-80044720 | MS.gene30333:intron | 40.0% |
| !! | CCCTTTTGCTGAGGTATTTA+TGG | - | chr8.1:80046183-80046202 | MS.gene30333:intron | 40.0% |
| !! | TTGTCGTACTTGGTGTCATT+GGG | - | chr8.1:80044702-80044721 | MS.gene30333:intron | 40.0% |
| AGCATCCGCATCCATGTTAT+GGG | + | chr8.1:80046489-80046508 | None:intergenic | 45.0% | |
| ATGACTTCTGTGAGCACTCA+TGG | - | chr8.1:80045973-80045992 | MS.gene30333:intron | 45.0% | |
| CCAAGTACGACAATGACACA+TGG | + | chr8.1:80044695-80044714 | None:intergenic | 45.0% | |
| GCACTCTACCATAATACCGT+TGG | - | chr8.1:80045720-80045739 | MS.gene30333:intron | 45.0% | |
| GGGACACAACGAAATACCAA+CGG | + | chr8.1:80045739-80045758 | None:intergenic | 45.0% | |
| TACCTCCCATAACATGGATG+CGG | - | chr8.1:80046481-80046500 | MS.gene30333:intron | 45.0% | |
| TCAGCAGTAACTGCAGATCA+TGG | + | chr8.1:80044576-80044595 | None:intergenic | 45.0% | |
| TTACTGCTGAGATCACTACC+TGG | - | chr8.1:80044586-80044605 | MS.gene30333:intron | 45.0% | |
| ! | AAGTGAGGCACTTGAGAACT+TGG | - | chr8.1:80046292-80046311 | MS.gene30333:intron | 45.0% |
| ! | CCATGTGTCATTGTCGTACT+TGG | - | chr8.1:80044692-80044711 | MS.gene30333:intron | 45.0% |
| ! | TTGACGAGATCGTTGATGGA+GGG | - | chr8.1:80046333-80046352 | MS.gene30333:intron | 45.0% |
| AAGACAAATGCGCGGACAGA+AGG | - | chr8.1:80045100-80045119 | MS.gene30333:intron | 50.0% | |
| AGCAAACATGCCAGGGTCTT+GGG | + | chr8.1:80045866-80045885 | None:intergenic | 50.0% | |
| ATCCGCATCCATGTTATGGG+AGG | + | chr8.1:80046486-80046505 | None:intergenic | 50.0% | |
| CGGACAGAAGGTAAGCGAAA+CGG | - | chr8.1:80045112-80045131 | MS.gene30333:intron | 50.0% | |
| CTCCATCAACGATCTCGTCA+AGG | + | chr8.1:80046334-80046353 | None:intergenic | 50.0% | |
| GAGCATCCGCATCCATGTTA+TGG | + | chr8.1:80046490-80046509 | None:intergenic | 50.0% | |
| GCAGACACTAACTCAGGCAT+GGG | - | chr8.1:80046644-80046663 | MS.gene30333:intron | 50.0% | |
| TATGCAGCAGATAGGGATGC+TGG | + | chr8.1:80045530-80045549 | None:intergenic | 50.0% | |
| TGCAGACACTAACTCAGGCA+TGG | - | chr8.1:80046643-80046662 | MS.gene30333:intron | 50.0% | |
| TGCCTTGACGAGATCGTTGA+TGG | - | chr8.1:80046329-80046348 | MS.gene30333:intron | 50.0% | |
| ! | ATGCAGTCACCCTTTTGCTG+AGG | - | chr8.1:80046174-80046193 | MS.gene30333:intron | 50.0% |
| ! | CTTGACGAGATCGTTGATGG+AGG | - | chr8.1:80046332-80046351 | MS.gene30333:intron | 50.0% |
| CATGAACTTCCCCAAGACCC+TGG | - | chr8.1:80045853-80045872 | MS.gene30333:intron | 55.0% | |
| GAAACAGTCACACCGCCACT+AGG | + | chr8.1:80045199-80045218 | None:intergenic | 55.0% | |
| GAGCAAACATGCCAGGGTCT+TGG | + | chr8.1:80045867-80045886 | None:intergenic | 55.0% | |
| GCAAACATGCCAGGGTCTTG+GGG | + | chr8.1:80045865-80045884 | None:intergenic | 55.0% | |
| GCGCCGCTATTTGACAACAC+TGG | + | chr8.1:80044381-80044400 | None:intergenic | 55.0% | |
| GGATGCTCCCTTATCAGAGC+AGG | - | chr8.1:80046502-80046521 | MS.gene30333:intron | 55.0% | |
| GTCGGTGCAACAGAGATTCC+AGG | + | chr8.1:80044607-80044626 | None:intergenic | 55.0% | |
| ! | AGACTCTGAAGGGAAGCGTG+TGG | - | chr8.1:80044997-80045016 | MS.gene30333:intron | 55.0% |
| ! | GACAACACTGGTCTGAGCAC+TGG | + | chr8.1:80044369-80044388 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 80043697 | 80046707 | 80043697 | ID=MS.gene30333 |
| chr8.1 | mRNA | 80043697 | 80046707 | 80043697 | ID=MS.gene30333.t1;Parent=MS.gene30333 |
| chr8.1 | exon | 80046696 | 80046707 | 80046696 | ID=MS.gene30333.t1.exon1;Parent=MS.gene30333.t1 |
| chr8.1 | CDS | 80046696 | 80046707 | 80046696 | ID=cds.MS.gene30333.t1;Parent=MS.gene30333.t1 |
| chr8.1 | exon | 80045283 | 80045442 | 80045283 | ID=MS.gene30333.t1.exon2;Parent=MS.gene30333.t1 |
| chr8.1 | CDS | 80045283 | 80045442 | 80045283 | ID=cds.MS.gene30333.t1;Parent=MS.gene30333.t1 |
| chr8.1 | exon | 80044209 | 80044356 | 80044209 | ID=MS.gene30333.t1.exon3;Parent=MS.gene30333.t1 |
| chr8.1 | CDS | 80044209 | 80044356 | 80044209 | ID=cds.MS.gene30333.t1;Parent=MS.gene30333.t1 |
| chr8.1 | exon | 80044050 | 80044127 | 80044050 | ID=MS.gene30333.t1.exon4;Parent=MS.gene30333.t1 |
| chr8.1 | CDS | 80044050 | 80044127 | 80044050 | ID=cds.MS.gene30333.t1;Parent=MS.gene30333.t1 |
| chr8.1 | exon | 80043881 | 80043965 | 80043881 | ID=MS.gene30333.t1.exon5;Parent=MS.gene30333.t1 |
| chr8.1 | CDS | 80043881 | 80043965 | 80043881 | ID=cds.MS.gene30333.t1;Parent=MS.gene30333.t1 |
| chr8.1 | exon | 80043697 | 80043756 | 80043697 | ID=MS.gene30333.t1.exon6;Parent=MS.gene30333.t1 |
| chr8.1 | CDS | 80043697 | 80043756 | 80043697 | ID=cds.MS.gene30333.t1;Parent=MS.gene30333.t1 |
| Gene Sequence |
| Protein sequence |
