Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07800.t1 | XP_013444380.1 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.60E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07800.t1 | Q8H1F4 | 74.7 | 178 | 45 | 0 | 3 | 180 | 4 | 181 | 8.8e-69 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07800.t1 | Q5QQ32 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.3e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07800 | MS.gene064893 | PPI |
| MS.gene07800 | MS.gene003223 | PPI |
| MS.gene07800 | MS.gene011220 | PPI |
| MS.gene07800 | MS.gene30333 | PPI |
| MS.gene07800 | MS.gene043279 | PPI |
| MS.gene07800 | MS.gene056700 | PPI |
| MS.gene003764 | MS.gene07800 | PPI |
| MS.gene07800 | MS.gene45686 | PPI |
| MS.gene07800 | MS.gene74768 | PPI |
| MS.gene07800 | MS.gene02789 | PPI |
| MS.gene07800 | MS.gene02023 | PPI |
| MS.gene07800 | MS.gene021666 | PPI |
| MS.gene07800 | MS.gene74608 | PPI |
| MS.gene07800 | MS.gene79635 | PPI |
| MS.gene07800 | MS.gene37394 | PPI |
| MS.gene014282 | MS.gene07800 | PPI |
| MS.gene07800 | MS.gene063166 | PPI |
| MS.gene07800 | MS.gene50077 | PPI |
| MS.gene07800 | MS.gene68223 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07800.t1 | MTR_8g017630 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 4.38e-131 | 365 |
| MS.gene07800.t1 | MTR_0350s0010 | 95.930 | 172 | 6 | 1 | 10 | 180 | 49 | 220 | 1.39e-117 | 332 |
| MS.gene07800.t1 | MTR_2g028750 | 75.862 | 174 | 42 | 0 | 6 | 179 | 31 | 204 | 9.70e-93 | 268 |
| MS.gene07800.t1 | MTR_7g009640 | 85.075 | 134 | 20 | 0 | 10 | 143 | 2 | 135 | 7.49e-81 | 236 |
| MS.gene07800.t1 | MTR_8g018030 | 87.302 | 63 | 8 | 0 | 3 | 65 | 4 | 66 | 3.21e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07800.t1 | AT4G08520 | 74.302 | 179 | 46 | 0 | 2 | 180 | 3 | 181 | 3.54e-96 | 276 |
| MS.gene07800.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene07800.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene07800.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 6 | 179 | 1.91e-94 | 272 |
| MS.gene07800.t1 | AT3G09800 | 75.287 | 174 | 43 | 0 | 7 | 180 | 86 | 259 | 3.42e-93 | 272 |
| MS.gene07800.t1 | AT1G60970 | 74.138 | 174 | 45 | 0 | 6 | 179 | 3 | 176 | 1.88e-92 | 267 |
| MS.gene07800.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
| MS.gene07800.t1 | AT3G09800 | 72.358 | 123 | 34 | 0 | 58 | 180 | 18 | 140 | 3.00e-58 | 179 |
Find 27 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATCAGCATCCATGTTA+TGG | 0.360054 | 8.3:+72501962 | None:intergenic |
| GCTAACTTTGAACTGTTTGT+TGG | 0.367588 | 8.3:+72503377 | None:intergenic |
| TGCCTTGACGAGATCGTTGA+TGG | 0.379967 | 8.3:-72502117 | MS.gene07800:CDS |
| ACCATAAATACCTCAGCAAA+AGG | 0.402570 | 8.3:+72502262 | None:intergenic |
| AAACATTACCTGCTCTGATA+AGG | 0.416364 | 8.3:+72501939 | None:intergenic |
| AACATTACCTGCTCTGATAA+GGG | 0.433513 | 8.3:+72501940 | None:intergenic |
| AGGATTATACTTGAAACAAA+TGG | 0.444102 | 8.3:-72502012 | MS.gene07800:CDS |
| AGCATCAGCATCCATGTTAT+GGG | 0.455423 | 8.3:+72501963 | None:intergenic |
| AAGTGAGGCACTTGAGAACT+TGG | 0.464349 | 8.3:-72502154 | MS.gene07800:CDS |
| AGTTCTTGTGAAAGTGTCTC+TGG | 0.483853 | 8.3:+72501775 | None:intergenic |
| GACTTGCATTTCTTTGTCAC+CGG | 0.485386 | 8.3:-72502348 | MS.gene07800:CDS |
| TGCAGACACTAACTCAGGCA+TGG | 0.549441 | 8.3:-72501805 | MS.gene07800:intron |
| AAGACAAATGCAAGGACAGA+AGG | 0.556427 | 8.3:-72503323 | MS.gene07800:intron |
| CCATAAATACCTCAGCAAAA+GGG | 0.557798 | 8.3:+72502263 | None:intergenic |
| TGATGCTCCCTTATCAGAGC+AGG | 0.557847 | 8.3:-72501947 | MS.gene07800:intron |
| AAAAGTGACCTCCCATAACA+TGG | 0.561356 | 8.3:-72501974 | MS.gene07800:CDS |
| TCAAGTATTACTCAGATGAC+TGG | 0.569025 | 8.3:-72503400 | MS.gene07800:CDS |
| GCAGACACTAACTCAGGCAT+GGG | 0.586167 | 8.3:-72501804 | MS.gene07800:intron |
| TTGCATTTCTTTGTCACCGG+TGG | 0.592057 | 8.3:-72502345 | MS.gene07800:CDS |
| CTCCATCAACGATCTCGTCA+AGG | 0.600844 | 8.3:+72502115 | None:intergenic |
| CTTGACGAGATCGTTGATGG+AGG | 0.615640 | 8.3:-72502114 | MS.gene07800:CDS |
| GATATTGCAGACACTAACTC+AGG | 0.619538 | 8.3:-72501810 | MS.gene07800:intron |
| TTGACGAGATCGTTGATGGA+GGG | 0.639948 | 8.3:-72502113 | MS.gene07800:intron |
| ATCAGCATCCATGTTATGGG+AGG | 0.659855 | 8.3:+72501966 | None:intergenic |
| AGACTCTGAAGGGAAGCGTG+TGG | 0.660009 | 8.3:-72503426 | MS.gene07800:CDS |
| GAGCAATGTTGACAAAAGTG+AGG | 0.686328 | 8.3:-72502169 | MS.gene07800:CDS |
| AGACTGTTAAGACAAATGCA+AGG | 0.700096 | 8.3:-72503331 | MS.gene07800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATCCAATTATTAT+CGG | - | chr8.3:72502855-72502874 | MS.gene07800:intron | 10.0% |
| !! | TCATTTATTTATTTACCTTT+CGG | - | chr8.3:72504042-72504061 | MS.gene07800:intron | 15.0% |
| !!! | TTTTTGATACATTCAAATAA+AGG | + | chr8.3:72503861-72503880 | None:intergenic | 15.0% |
| !! | AACAATTTAAGAAAAAGACT+TGG | - | chr8.3:72503726-72503745 | MS.gene07800:intron | 20.0% |
| !! | AATAAAACAATAGATACCAT+TGG | + | chr8.3:72504105-72504124 | None:intergenic | 20.0% |
| !! | CATTTATTTATTTACCTTTC+GGG | - | chr8.3:72504043-72504062 | MS.gene07800:intron | 20.0% |
| !! | CTAAAAATAAAGTTGCATAT+CGG | + | chr8.3:72503420-72503439 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAATAGAACTAT+TGG | + | chr8.3:72503503-72503522 | None:intergenic | 20.0% |
| !! | GTGAACTTTATATAAATCAA+AGG | + | chr8.3:72503928-72503947 | None:intergenic | 20.0% |
| !! | TGATTTATATAAAGTTCACA+AGG | - | chr8.3:72503929-72503948 | MS.gene07800:intron | 20.0% |
| !!! | AGTCTTTTTCTTAAATTGTT+AGG | + | chr8.3:72503726-72503745 | None:intergenic | 20.0% |
| !!! | AGTTATTTTTAACATGTGAA+TGG | - | chr8.3:72503984-72504003 | MS.gene07800:intron | 20.0% |
| !!! | AGTTTTGCAAATTTGAAAAA+GGG | - | chr8.3:72503051-72503070 | MS.gene07800:intron | 20.0% |
| !!! | ATTCATACGAATCATATTTT+AGG | - | chr8.3:72502185-72502204 | MS.gene07800:intron | 20.0% |
| !!! | GGTTATTATATTATGCATTT+TGG | - | chr8.3:72503439-72503458 | MS.gene07800:CDS | 20.0% |
| !!! | TTATATTATGCATTTTGGTT+TGG | - | chr8.3:72503444-72503463 | MS.gene07800:CDS | 20.0% |
| ! | AATCCTTCATGCAAAAAATA+AGG | + | chr8.3:72504574-72504593 | None:intergenic | 25.0% |
| ! | AGGATTATACTTGAAACAAA+TGG | - | chr8.3:72504588-72504607 | MS.gene07800:intron | 25.0% |
| ! | ATCCTAAAATATGATTCGTA+TGG | + | chr8.3:72502129-72502148 | None:intergenic | 25.0% |
| ! | ATCTGATGATTAAGCAAAAT+TGG | - | chr8.3:72502461-72502480 | MS.gene07800:intron | 25.0% |
| ! | ATTAAGCACTTCAAAATTGA+AGG | + | chr8.3:72503790-72503809 | None:intergenic | 25.0% |
| ! | CAGCTTATTCTAATCAATTT+AGG | - | chr8.3:72501954-72501973 | MS.gene07800:CDS | 25.0% |
| ! | GAAGAATAAATAGACTTTCA+TGG | + | chr8.3:72504546-72504565 | None:intergenic | 25.0% |
| ! | TAAACACAAATCTTCAACAT+AGG | + | chr8.3:72502505-72502524 | None:intergenic | 25.0% |
| ! | TTCTAATCAATTTAGGAACT+TGG | - | chr8.3:72501961-72501980 | MS.gene07800:CDS | 25.0% |
| ! | TTGAATCTAATCACATGTTT+CGG | + | chr8.3:72502829-72502848 | None:intergenic | 25.0% |
| ! | TTTCCGAATTAAAATCAGAT+GGG | - | chr8.3:72504378-72504397 | MS.gene07800:intron | 25.0% |
| !! | AACCATACGAATCATATTTT+AGG | - | chr8.3:72502124-72502143 | MS.gene07800:CDS | 25.0% |
| !! | CAGTTTTGCAAATTTGAAAA+AGG | - | chr8.3:72503050-72503069 | MS.gene07800:intron | 25.0% |
| !! | GAAAATTGCTCTTTTATGAA+TGG | - | chr8.3:72502966-72502985 | MS.gene07800:intron | 25.0% |
| !! | TTTTCCGAATTAAAATCAGA+TGG | - | chr8.3:72504377-72504396 | MS.gene07800:intron | 25.0% |
| !!! | AACATCCTTTCTAGTTTATT+AGG | - | chr8.3:72503812-72503831 | MS.gene07800:intron | 25.0% |
| !!! | ACAGGGATAAATGTTTTAAA+CGG | + | chr8.3:72502339-72502358 | None:intergenic | 25.0% |
| !!! | ACGAATCATATTTTAGGATT+TGG | - | chr8.3:72502130-72502149 | MS.gene07800:CDS | 25.0% |
| !!! | AGAAGAATGTTTTTTATCGA+AGG | + | chr8.3:72503151-72503170 | None:intergenic | 25.0% |
| !!! | ATACCCATCTGATTTTAATT+CGG | + | chr8.3:72504384-72504403 | None:intergenic | 25.0% |
| !!! | CGAATCATATTTTAGGATTT+GGG | - | chr8.3:72502131-72502150 | MS.gene07800:CDS | 25.0% |
| !!! | CGATATGCAACTTTATTTTT+AGG | - | chr8.3:72503418-72503437 | MS.gene07800:CDS | 25.0% |
| !!! | GCCATATTTTTATATCTGTA+GGG | - | chr8.3:72503118-72503137 | MS.gene07800:intron | 25.0% |
| !!! | GTTATGTTTTTTTGTCTTGA+TGG | - | chr8.3:72502430-72502449 | MS.gene07800:intron | 25.0% |
| !!! | TATGTTTTGTGTTTGTTGAT+TGG | - | chr8.3:72502167-72502186 | MS.gene07800:CDS | 25.0% |
| !!! | TCATTTTATCATTTAGCTCA+AGG | + | chr8.3:72503574-72503593 | None:intergenic | 25.0% |
| !!! | TGCCATATTTTTATATCTGT+AGG | - | chr8.3:72503117-72503136 | MS.gene07800:intron | 25.0% |
| !!! | TTTTTTTCTTTCTGTTGTGA+GGG | - | chr8.3:72501922-72501941 | MS.gene07800:intron | 25.0% |
| !!! | TTTTTTTTCTTTCTGTTGTG+AGG | - | chr8.3:72501921-72501940 | MS.gene07800:intron | 25.0% |
| AAATTGGATTAACTTTGCTG+TGG | - | chr8.3:72502477-72502496 | MS.gene07800:intron | 30.0% | |
| AACACTCTTCAATAAACCAA+TGG | - | chr8.3:72504086-72504105 | MS.gene07800:intron | 30.0% | |
| ACGTCTTTGATTAGAAGTTT+CGG | + | chr8.3:72502773-72502792 | None:intergenic | 30.0% | |
| ATTGCTTTACGTCAAAACTA+TGG | - | chr8.3:72502062-72502081 | MS.gene07800:intron | 30.0% | |
| CAATGACTTATCATCTTATG+AGG | + | chr8.3:72503546-72503565 | None:intergenic | 30.0% | |
| CATAACAAACAATCACTACA+GGG | + | chr8.3:72502356-72502375 | None:intergenic | 30.0% | |
| CTGTCAATTGCATATAATAG+TGG | + | chr8.3:72502690-72502709 | None:intergenic | 30.0% | |
| GCCCTACAGATATAAAAATA+TGG | + | chr8.3:72503122-72503141 | None:intergenic | 30.0% | |
| GTGTCTTGCATATATGTAAA+TGG | - | chr8.3:72503663-72503682 | MS.gene07800:intron | 30.0% | |
| TAAATCAAAGGCCAAAAAAC+TGG | + | chr8.3:72503916-72503935 | None:intergenic | 30.0% | |
| TATAATCGATGTGAAGAGAA+AGG | - | chr8.3:72502408-72502427 | MS.gene07800:intron | 30.0% | |
| TCTAGTGTAATGCTTAATTG+TGG | - | chr8.3:72503360-72503379 | MS.gene07800:CDS | 30.0% | |
| TCTTATTAGTTCCTAATTCC+TGG | + | chr8.3:72502929-72502948 | None:intergenic | 30.0% | |
| TTCTTAAATTGTTAGGATGC+TGG | + | chr8.3:72503719-72503738 | None:intergenic | 30.0% | |
| TTGCTTTACGTCAAAACTAT+GGG | - | chr8.3:72502063-72502082 | MS.gene07800:intron | 30.0% | |
| TTTCGCCTAATAAACTAGAA+AGG | + | chr8.3:72503820-72503839 | None:intergenic | 30.0% | |
| ! | ATTCTTCTTTTAGACTCTGA+AGG | - | chr8.3:72503163-72503182 | MS.gene07800:intron | 30.0% |
| ! | ATTTTGTCATCTGTTCTTCA+AGG | - | chr8.3:72504297-72504316 | MS.gene07800:intron | 30.0% |
| ! | GGAGTGATTTAAGTTTGAAT+GGG | - | chr8.3:72502273-72502292 | MS.gene07800:CDS | 30.0% |
| ! | TGGAGTGATTTAAGTTTGAA+TGG | - | chr8.3:72502272-72502291 | MS.gene07800:intron | 30.0% |
| ! | TTCTTCTTTTAGACTCTGAA+GGG | - | chr8.3:72503164-72503183 | MS.gene07800:intron | 30.0% |
| !! | TCTGTTTTTCGTTTGTTTCT+TGG | - | chr8.3:72501997-72502016 | MS.gene07800:CDS | 30.0% |
| !! | TTTTAAACGGATCTGAAATG+AGG | + | chr8.3:72502326-72502345 | None:intergenic | 30.0% |
| !!! | ACACCTTATTTTTTGCATGA+AGG | - | chr8.3:72504568-72504587 | MS.gene07800:intron | 30.0% |
| !!! | GATGTTATTTTCTGTTCTGA+TGG | - | chr8.3:72502095-72502114 | MS.gene07800:intron | 30.0% |
| AAACATTACCTGCTCTGATA+AGG | + | chr8.3:72504664-72504683 | None:intergenic | 35.0% | |
| AAAGAAACACGATAACCATG+AGG | + | chr8.3:72504148-72504167 | None:intergenic | 35.0% | |
| AAAGATAGAGAAGCTTACGT+TGG | + | chr8.3:72501773-72501792 | None:intergenic | 35.0% | |
| AAATGCAAGCAGAATTGATG+TGG | + | chr8.3:72503015-72503034 | None:intergenic | 35.0% | |
| AACATTACCTGCTCTGATAA+GGG | + | chr8.3:72504663-72504682 | None:intergenic | 35.0% | |
| AAGAAACACGATAACCATGA+GGG | + | chr8.3:72504147-72504166 | None:intergenic | 35.0% | |
| AAGCACTTCAAAATTGAAGG+CGG | + | chr8.3:72503787-72503806 | None:intergenic | 35.0% | |
| AATAAATGAGCAAACACACC+AGG | + | chr8.3:72504031-72504050 | None:intergenic | 35.0% | |
| ACATGGACACCGATAATAAT+TGG | + | chr8.3:72502867-72502886 | None:intergenic | 35.0% | |
| ACCATAAATACCTCAGCAAA+AGG | + | chr8.3:72504341-72504360 | None:intergenic | 35.0% | |
| AGACTGTTAAGACAAATGCA+AGG | - | chr8.3:72503269-72503288 | MS.gene07800:intron | 35.0% | |
| AGTGTAATGCTTAATTGTGG+TGG | - | chr8.3:72503363-72503382 | MS.gene07800:CDS | 35.0% | |
| ATAAATGAGCAAACACACCA+GGG | + | chr8.3:72504030-72504049 | None:intergenic | 35.0% | |
| ATGGTTATCGTGTTTCTTTG+AGG | - | chr8.3:72504149-72504168 | MS.gene07800:intron | 35.0% | |
| CATATTTGTGATCCATTTGC+AGG | - | chr8.3:72504409-72504428 | MS.gene07800:intron | 35.0% | |
| CCATAAATACCTCAGCAAAA+GGG | + | chr8.3:72504340-72504359 | None:intergenic | 35.0% | |
| CTCTAACCTAAATAGCGTAT+CGG | + | chr8.3:72502606-72502625 | None:intergenic | 35.0% | |
| GATTGGATCGTTTAGTGATT+TGG | - | chr8.3:72502245-72502264 | MS.gene07800:intron | 35.0% | |
| GCATAACAAACAATCACTAC+AGG | + | chr8.3:72502357-72502376 | None:intergenic | 35.0% | |
| GCTAACTTTGAACTGTTTGT+TGG | + | chr8.3:72503226-72503245 | None:intergenic | 35.0% | |
| TCAAGTATTACTCAGATGAC+TGG | - | chr8.3:72503200-72503219 | MS.gene07800:intron | 35.0% | |
| TTGTCAAATAGCAGCTATAG+CGG | - | chr8.3:72502628-72502647 | MS.gene07800:intron | 35.0% | |
| TTTGTTCCGATACGCTATTT+AGG | - | chr8.3:72502597-72502616 | MS.gene07800:intron | 35.0% | |
| ! | TCGTTTAGTGATTTGGACTT+TGG | - | chr8.3:72502252-72502271 | MS.gene07800:intron | 35.0% |
| !! | ATTGTCGTATATGGTGTCAT+TGG | - | chr8.3:72502890-72502909 | MS.gene07800:intron | 35.0% |
| !! | GAACTGTATTTTTCAGACAC+TGG | + | chr8.3:72503084-72503103 | None:intergenic | 35.0% |
| !! | TTGTCGTATATGGTGTCATT+GGG | - | chr8.3:72502891-72502910 | MS.gene07800:intron | 35.0% |
| !!! | TTGCATTTTGATTTCCCGAA+AGG | + | chr8.3:72504060-72504079 | None:intergenic | 35.0% |
| AAAAGTGACCTCCCATAACA+TGG | - | chr8.3:72504626-72504645 | MS.gene07800:intron | 40.0% | |
| AAGACAAATGCAAGGACAGA+AGG | - | chr8.3:72503277-72503296 | MS.gene07800:intron | 40.0% | |
| ACTAGTTCATAACACTGGTC+TGG | + | chr8.3:72502542-72502561 | None:intergenic | 40.0% | |
| AGACCAGTGTTATGAACTAG+TGG | - | chr8.3:72502541-72502560 | MS.gene07800:intron | 40.0% | |
| AGCATCAGCATCCATGTTAT+GGG | + | chr8.3:72504640-72504659 | None:intergenic | 40.0% | |
| CATGCACGTCGATAAGTAAA+AGG | + | chr8.3:72503480-72503499 | None:intergenic | 40.0% | |
| CCATATACGACAATGACACA+TGG | + | chr8.3:72502884-72502903 | None:intergenic | 40.0% | |
| CTTCTAATCAAAGACGTGTC+TGG | - | chr8.3:72502776-72502795 | MS.gene07800:intron | 40.0% | |
| GACTTGCATTTCTTTGTCAC+CGG | - | chr8.3:72504252-72504271 | MS.gene07800:intron | 40.0% | |
| GAGCAATGTTGACAAAAGTG+AGG | - | chr8.3:72504431-72504450 | MS.gene07800:intron | 40.0% | |
| GATATTGCAGACACTAACTC+AGG | - | chr8.3:72504790-72504809 | MS.gene07800:intron | 40.0% | |
| GGTTACATCAAGAATCGTGT+TGG | + | chr8.3:72503399-72503418 | None:intergenic | 40.0% | |
| TAAATGAGCAAACACACCAG+GGG | + | chr8.3:72504029-72504048 | None:intergenic | 40.0% | |
| TCTATCTCAGTCAAATCAGC+TGG | - | chr8.3:72503641-72503660 | MS.gene07800:intron | 40.0% | |
| TTCGTTTCACTGACACATGT+CGG | + | chr8.3:72502805-72502824 | None:intergenic | 40.0% | |
| ! | ATAACTTTTGTGAGCCCTCA+TGG | - | chr8.3:72504130-72504149 | MS.gene07800:intron | 40.0% |
| ! | CCATGTGTCATTGTCGTATA+TGG | - | chr8.3:72502881-72502900 | MS.gene07800:intron | 40.0% |
| ! | CTAGTTCATAACACTGGTCT+GGG | + | chr8.3:72502541-72502560 | None:intergenic | 40.0% |
| ! | CTCATTTTCATCATCACCAC+CGG | + | chr8.3:72504274-72504293 | None:intergenic | 40.0% |
| !! | AATTGAAGGCGGTGTCATAA+AGG | + | chr8.3:72503776-72503795 | None:intergenic | 40.0% |
| !! | AGTTCTTGTGAAAGTGTCTC+TGG | + | chr8.3:72504828-72504847 | None:intergenic | 40.0% |
| !! | CCCTTTTGCTGAGGTATTTA+TGG | - | chr8.3:72504337-72504356 | MS.gene07800:intron | 40.0% |
| !! | TAGTGGTGCTATAACACTGT+TGG | - | chr8.3:72502558-72502577 | MS.gene07800:intron | 40.0% |
| !!! | GTCACTTTTTCAGCGATAAG+AGG | + | chr8.3:72504615-72504634 | None:intergenic | 40.0% |
| ATCAGCATCCATGTTATGGG+AGG | + | chr8.3:72504637-72504656 | None:intergenic | 45.0% | |
| GAGCATCAGCATCCATGTTA+TGG | + | chr8.3:72504641-72504660 | None:intergenic | 45.0% | |
| GCACCACTAGTTCATAACAC+TGG | + | chr8.3:72502547-72502566 | None:intergenic | 45.0% | |
| GTCAACATTGCTCCTGCAAA+TGG | + | chr8.3:72504424-72504443 | None:intergenic | 45.0% | |
| TCAGCAGTAACTGCAAGTCA+TGG | + | chr8.3:72502724-72502743 | None:intergenic | 45.0% | |
| TCCAAGTTAGCACTCTACTG+TGG | - | chr8.3:72503888-72503907 | MS.gene07800:intron | 45.0% | |
| TTGCATTTCTTTGTCACCGG+TGG | - | chr8.3:72504255-72504274 | MS.gene07800:intron | 45.0% | |
| ! | AAGTGAGGCACTTGAGAACT+TGG | - | chr8.3:72504446-72504465 | MS.gene07800:intron | 45.0% |
| ! | ATGACTTGCAGTTACTGCTG+AGG | - | chr8.3:72502723-72502742 | MS.gene07800:intron | 45.0% |
| ! | CACAAGGCATTTGCTAGTAG+TGG | - | chr8.3:72503945-72503964 | MS.gene07800:intron | 45.0% |
| ! | TTGACGAGATCGTTGATGGA+GGG | - | chr8.3:72504487-72504506 | MS.gene07800:intron | 45.0% |
| !!! | CTACTGTGGCACCAGTTTTT+TGG | - | chr8.3:72503902-72503921 | MS.gene07800:intron | 45.0% |
| CTCCATCAACGATCTCGTCA+AGG | + | chr8.3:72504488-72504507 | None:intergenic | 50.0% | |
| GCAGACACTAACTCAGGCAT+GGG | - | chr8.3:72504796-72504815 | MS.gene07800:intron | 50.0% | |
| GTCGCTACCATGAATCTCTG+TGG | - | chr8.3:72502745-72502764 | MS.gene07800:intron | 50.0% | |
| GTGCTTCATCGCCAGGAATT+AGG | - | chr8.3:72502915-72502934 | MS.gene07800:intron | 50.0% | |
| TGATGCTCCCTTATCAGAGC+AGG | - | chr8.3:72504653-72504672 | MS.gene07800:intron | 50.0% | |
| TGCAATTGACAGCACTGCGA+TGG | - | chr8.3:72502698-72502717 | MS.gene07800:intron | 50.0% | |
| TGCAGACACTAACTCAGGCA+TGG | - | chr8.3:72504795-72504814 | MS.gene07800:intron | 50.0% | |
| TGCCTTGACGAGATCGTTGA+TGG | - | chr8.3:72504483-72504502 | MS.gene07800:intron | 50.0% | |
| ! | ATGCAGTCACCCTTTTGCTG+AGG | - | chr8.3:72504328-72504347 | MS.gene07800:intron | 50.0% |
| ! | CTTGACGAGATCGTTGATGG+AGG | - | chr8.3:72504486-72504505 | MS.gene07800:intron | 50.0% |
| ! | GCCACAGTAGAGTGCTAACT+TGG | + | chr8.3:72503892-72503911 | None:intergenic | 50.0% |
| !! | TTCGGTGCCACAGAGATTCA+TGG | + | chr8.3:72502755-72502774 | None:intergenic | 50.0% |
| AGCAAACACACCAGGGGTCT+TGG | + | chr8.3:72504023-72504042 | None:intergenic | 55.0% | |
| ATGAACTTCCCCAAGACCCC+TGG | - | chr8.3:72504010-72504029 | MS.gene07800:intron | 55.0% | |
| CAAACACACCAGGGGTCTTG+GGG | + | chr8.3:72504021-72504040 | None:intergenic | 55.0% | |
| GCAAACACACCAGGGGTCTT+GGG | + | chr8.3:72504022-72504041 | None:intergenic | 55.0% | |
| ! | AGACTCTGAAGGGAAGCGTG+TGG | - | chr8.3:72503174-72503193 | MS.gene07800:intron | 55.0% |
| !! | ATTGGGAGTGCTTCATCGCC+AGG | - | chr8.3:72502908-72502927 | MS.gene07800:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 72501763 | 72504859 | 72501763 | ID=MS.gene07800 |
| chr8.3 | mRNA | 72501763 | 72504859 | 72501763 | ID=MS.gene07800.t1;Parent=MS.gene07800 |
| chr8.3 | exon | 72504848 | 72504859 | 72504848 | ID=MS.gene07800.t1.exon1;Parent=MS.gene07800.t1 |
| chr8.3 | CDS | 72504848 | 72504859 | 72504848 | ID=cds.MS.gene07800.t1;Parent=MS.gene07800.t1 |
| chr8.3 | exon | 72503324 | 72503483 | 72503324 | ID=MS.gene07800.t1.exon2;Parent=MS.gene07800.t1 |
| chr8.3 | CDS | 72503324 | 72503483 | 72503324 | ID=cds.MS.gene07800.t1;Parent=MS.gene07800.t1 |
| chr8.3 | exon | 72502273 | 72502420 | 72502273 | ID=MS.gene07800.t1.exon3;Parent=MS.gene07800.t1 |
| chr8.3 | CDS | 72502273 | 72502420 | 72502273 | ID=cds.MS.gene07800.t1;Parent=MS.gene07800.t1 |
| chr8.3 | exon | 72502114 | 72502191 | 72502114 | ID=MS.gene07800.t1.exon4;Parent=MS.gene07800.t1 |
| chr8.3 | CDS | 72502114 | 72502191 | 72502114 | ID=cds.MS.gene07800.t1;Parent=MS.gene07800.t1 |
| chr8.3 | exon | 72501948 | 72502032 | 72501948 | ID=MS.gene07800.t1.exon5;Parent=MS.gene07800.t1 |
| chr8.3 | CDS | 72501948 | 72502032 | 72501948 | ID=cds.MS.gene07800.t1;Parent=MS.gene07800.t1 |
| chr8.3 | exon | 72501763 | 72501822 | 72501763 | ID=MS.gene07800.t1.exon6;Parent=MS.gene07800.t1 |
| chr8.3 | CDS | 72501763 | 72501822 | 72501763 | ID=cds.MS.gene07800.t1;Parent=MS.gene07800.t1 |
| Gene Sequence |
| Protein sequence |
