AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02023

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02023.t1 MTR_2g028750 98.352 182 3 0 1 182 24 205 7.67e-131 365
MS.gene02023.t1 MTR_8g017630 75.862 174 42 0 8 181 6 179 3.89e-93 269
MS.gene02023.t1 MTR_0350s0010 72.515 171 46 1 12 181 49 219 1.93e-85 251
MS.gene02023.t1 MTR_7g009640 75.781 128 31 0 12 139 2 129 1.56e-71 213
MS.gene02023.t1 MTR_8g018030 66.667 60 20 0 8 67 7 66 7.75e-24 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02023.t1 AT1G60970 75.706 177 43 0 6 182 1 177 2.28e-97 280
MS.gene02023.t1 AT3G09800 70.166 181 51 1 1 181 1 178 7.52e-93 268
MS.gene02023.t1 AT3G09800 70.166 181 51 1 1 181 1 178 7.52e-93 268
MS.gene02023.t1 AT3G09800 70.166 181 51 1 1 181 1 178 7.52e-93 268
MS.gene02023.t1 AT3G09800 70.166 181 51 1 1 181 81 258 2.05e-91 267
MS.gene02023.t1 AT4G08520 72.093 172 48 0 10 181 9 180 3.06e-91 264
MS.gene02023.t1 AT3G09800 71.311 122 35 0 60 181 18 139 2.29e-61 187
MS.gene02023.t1 AT3G09800 71.311 122 35 0 60 181 18 139 2.29e-61 187

Find 38 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTCCCAGCTATAGTATT+TGG 0.152147 2.2:+59009808 None:intergenic
TGTGAAGAACATCCTTCTTT+TGG 0.230451 2.2:-59011589 MS.gene02023:CDS
GATCTTCACTTCTTTGTTAC+TGG 0.233863 2.2:-59011265 MS.gene02023:CDS
AAAAGCTTCCTTTGCACTAT+TGG 0.246999 2.2:+59011515 None:intergenic
GGAAGTAATAGTACAGATTC+TGG 0.313738 2.2:-59009784 MS.gene02023:CDS
ATTCAGTTGGCCTCCTGCTC+AGG 0.331455 2.2:-59011189 MS.gene02023:intron
TGGAGCTCCTTTGTCTGAAC+AGG 0.379095 2.2:-59009764 MS.gene02023:intron
TTCATGTAGTTCATTTAAGA+AGG 0.405897 2.2:+59009608 None:intergenic
ACTACTCCAAATACTATAGC+TGG 0.418010 2.2:-59009814 MS.gene02023:CDS
GAAGGAAGCACTGGAGAACT+TGG 0.432743 2.2:-59011033 MS.gene02023:CDS
ATCGATGAAATTATTGATGC+AGG 0.435159 2.2:-59010993 MS.gene02023:CDS
CTAAGTATTTCACAGATGAT+TGG 0.437609 2.2:-59011542 MS.gene02023:CDS
TAACAAAGAAGTGAAGATCT+TGG 0.449077 2.2:+59011269 None:intergenic
ATCTTCACTTCTTTGTTACT+GGG 0.467745 2.2:-59011264 MS.gene02023:CDS
AGAGAGAGAGATTACGAGCT+TGG 0.468302 2.2:+59012510 None:intergenic
AATACTATAGCTGGGAAAGT+TGG 0.483190 2.2:-59009805 MS.gene02023:CDS
TATCTTATCCTCAGTTCTGC+AGG 0.484498 2.2:-59011221 MS.gene02023:CDS
GCTTCCTTTGCACTATTGGT+TGG 0.497397 2.2:+59011519 None:intergenic
TATCAGAAAACAACCTGAGC+AGG 0.503709 2.2:+59011176 None:intergenic
GTCAAGCATTGGCCTCAGCT+AGG 0.506234 2.2:-59009648 MS.gene02023:CDS
AGAAGGATGTTCTTCACAGA+AGG 0.510757 2.2:+59011594 None:intergenic
AGAGAGATTACGAGCTTGGA+AGG 0.514127 2.2:+59012514 None:intergenic
GCAGACACTAAGTCAAGCAT+TGG 0.516098 2.2:-59009659 MS.gene02023:intron
TCAAGCATTGGCCTCAGCTA+GGG 0.518417 2.2:-59009647 MS.gene02023:CDS
CTCACCTTCAGTGCGAGCAT+TGG 0.533277 2.2:+59011461 None:intergenic
TCCCATCAGAATCCAAAAGA+AGG 0.535691 2.2:+59011577 None:intergenic
CAGAGGCAATGTGGACAAGA+AGG 0.539823 2.2:-59011051 MS.gene02023:CDS
TGTGGACAAGAAGGAAGCAC+TGG 0.543071 2.2:-59011042 MS.gene02023:CDS
AAGACCAATGCTCGCACTGA+AGG 0.548318 2.2:-59011465 MS.gene02023:intron
TCATGTAGTTCATTTAAGAA+GGG 0.561156 2.2:+59009609 None:intergenic
CTACTCCAAATACTATAGCT+GGG 0.575062 2.2:-59009813 MS.gene02023:CDS
TCGATGAAATTATTGATGCA+GGG 0.579583 2.2:-59010992 MS.gene02023:intron
GAAGGATGTTCTTCACAGAA+GGG 0.583930 2.2:+59011595 None:intergenic
CAACATACCTGTTCAGACAA+AGG 0.612109 2.2:+59009757 None:intergenic
TGCAAGATGTTCCCTAGCTG+AGG 0.615227 2.2:+59009636 None:intergenic
CAGAAAACAACCTGAGCAGG+AGG 0.629118 2.2:+59011179 None:intergenic
TTGGCCAACCAATAGTGCAA+AGG 0.655463 2.2:-59011523 MS.gene02023:CDS
GGATTCTGATGGGAGACGTG+TGG 0.674441 2.2:-59011568 MS.gene02023:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATGATAATCGT+GGG + chr2.2:59009763-59009782 None:intergenic 15.0%
!! TAAATTAAACTCACTTATTT+GGG - chr2.2:59012434-59012453 MS.gene02023:intron 15.0%
!! TTAAATTAAACTCACTTATT+TGG - chr2.2:59012433-59012452 MS.gene02023:intron 15.0%
!!! AAATTTTTTTATGCTATCAA+AGG + chr2.2:59012415-59012434 None:intergenic 15.0%
!!! AATTTTTTTATGCTATCAAA+GGG + chr2.2:59012414-59012433 None:intergenic 15.0%
!! AAATCATTAGAAAGAAAATC+TGG - chr2.2:59011395-59011414 MS.gene02023:intron 20.0%
!! AATCATTAGAAAGAAAATCT+GGG - chr2.2:59011396-59011415 MS.gene02023:intron 20.0%
!! CAAAAATAAAATGATAATCG+TGG + chr2.2:59009764-59009783 None:intergenic 20.0%
!! CCATTATTATAACAGTTTAA+AGG - chr2.2:59010139-59010158 MS.gene02023:intron 20.0%
!! CCTTTAAACTGTTATAATAA+TGG + chr2.2:59010142-59010161 None:intergenic 20.0%
!! TATAATTATGGAAATCACAA+TGG + chr2.2:59011884-59011903 None:intergenic 20.0%
!! TTAGTAATAACTCTAAATTG+TGG - chr2.2:59010019-59010038 MS.gene02023:intron 20.0%
!!! AATAATGGTTCTAAAAATGT+GGG + chr2.2:59010127-59010146 None:intergenic 20.0%
!!! ATCTTTTCATTTAATAGCTA+TGG + chr2.2:59011577-59011596 None:intergenic 20.0%
!!! TAATAATGGTTCTAAAAATG+TGG + chr2.2:59010128-59010147 None:intergenic 20.0%
!!! TTTATTTTGTGAGAAGAATT+TGG - chr2.2:59010723-59010742 MS.gene02023:intron 20.0%
!!! TTTTTGTGTGATTTTGATTT+TGG - chr2.2:59009869-59009888 MS.gene02023:intron 20.0%
! ACCTAAAAAAACGCATATTA+CGG + chr2.2:59010064-59010083 None:intergenic 25.0%
! AGAACCTAACAAACAAATAA+TGG + chr2.2:59011215-59011234 None:intergenic 25.0%
! ATAAAAAATACCTCTAGACA+AGG + chr2.2:59010708-59010727 None:intergenic 25.0%
! ATATGTATCCATCAAATCAA+AGG + chr2.2:59012123-59012142 None:intergenic 25.0%
! ATCAAAGGAAATGAATAAGA+AGG + chr2.2:59012108-59012127 None:intergenic 25.0%
! ATCTATAAGTATCTCTGTAT+AGG + chr2.2:59010228-59010247 None:intergenic 25.0%
! ATGAATATTTAGTGAGACTA+GGG + chr2.2:59012272-59012291 None:intergenic 25.0%
! CAACAAGAAACATAAAATGT+TGG + chr2.2:59009961-59009980 None:intergenic 25.0%
! CTTTCAAGAAGAGTTTATAA+AGG + chr2.2:59012020-59012039 None:intergenic 25.0%
! GAATAATACTGCACAAAATA+TGG + chr2.2:59012299-59012318 None:intergenic 25.0%
! TATCTATGTGTGATATTCAA+AGG - chr2.2:59010995-59011014 MS.gene02023:CDS 25.0%
! TCTTCCATTATTTGTTTGTT+AGG - chr2.2:59011208-59011227 MS.gene02023:CDS 25.0%
! TGCTAAAATTCAAATACAGT+GGG + chr2.2:59011910-59011929 None:intergenic 25.0%
! TTGCTAAAATTCAAATACAG+TGG + chr2.2:59011911-59011930 None:intergenic 25.0%
!! ATTCAAATCTACACTGATTA+AGG + chr2.2:59011425-59011444 None:intergenic 25.0%
!! CAACATTTTATGTTTCTTGT+TGG - chr2.2:59009959-59009978 MS.gene02023:intron 25.0%
!! CTTTTAACAAGGGTTTTTAA+GGG + chr2.2:59011990-59012009 None:intergenic 25.0%
!! TCTTTTAACAAGGGTTTTTA+AGG + chr2.2:59011991-59012010 None:intergenic 25.0%
!! TGATTTGATGGATACATATA+GGG - chr2.2:59012124-59012143 MS.gene02023:intron 25.0%
!! TTAGATCAAAACGATAGTTT+TGG - chr2.2:59011602-59011621 MS.gene02023:CDS 25.0%
!! TTGATTTGATGGATACATAT+AGG - chr2.2:59012123-59012142 MS.gene02023:intron 25.0%
!! TTGTATTGTGTGTTATTGTT+AGG - chr2.2:59010513-59010532 MS.gene02023:intron 25.0%
!!! ATTCATTTCCTTTGATTTGA+TGG - chr2.2:59012112-59012131 MS.gene02023:intron 25.0%
AAGAAGGAAGTTGAGAAAAA+AGG + chr2.2:59012092-59012111 None:intergenic 30.0%
AATGTTGGATCAAACGAAAA+AGG + chr2.2:59009946-59009965 None:intergenic 30.0%
AATTGTGATAGAGAGGAATT+GGG + chr2.2:59012150-59012169 None:intergenic 30.0%
ACAACAAAAAAGAAACCAAG+AGG + chr2.2:59011816-59011835 None:intergenic 30.0%
ACCAAGAGGAAATAGAATTA+AGG + chr2.2:59011802-59011821 None:intergenic 30.0%
AGAAACCAGTAATATTGTCA+AGG + chr2.2:59011053-59011072 None:intergenic 30.0%
AGAAGAGTTTATAAAGGTGA+AGG + chr2.2:59012014-59012033 None:intergenic 30.0%
ATAAAAACAAAAGTCGCACA+AGG - chr2.2:59011355-59011374 MS.gene02023:intron 30.0%
ATAAACTCCATCCAAGATTT+AGG + chr2.2:59011767-59011786 None:intergenic 30.0%
ATCGATGAAATTATTGATGC+AGG - chr2.2:59011145-59011164 MS.gene02023:intron 30.0%
ATCTTCACTTCTTTGTTACT+GGG - chr2.2:59010874-59010893 MS.gene02023:intron 30.0%
CAAAGAAGAGAGAAATATGA+AGG + chr2.2:59012217-59012236 None:intergenic 30.0%
CTAAGTATTTCACAGATGAT+TGG - chr2.2:59010596-59010615 MS.gene02023:intron 30.0%
GAAAAAATTAGTGAAACCTC+AGG + chr2.2:59011460-59011479 None:intergenic 30.0%
GAAATATGAAGGTGAAAATG+AGG + chr2.2:59012206-59012225 None:intergenic 30.0%
GATGAATATTTAGTGAGACT+AGG + chr2.2:59012273-59012292 None:intergenic 30.0%
GCAAATGTTGAAGACTAAAT+CGG + chr2.2:59009733-59009752 None:intergenic 30.0%
TAAAAACAACCCATCAAAGT+AGG + chr2.2:59010794-59010813 None:intergenic 30.0%
TAACAAAGAAGTGAAGATCT+TGG + chr2.2:59010872-59010891 None:intergenic 30.0%
TACAGTGGGACTTATAATTA+TGG + chr2.2:59011896-59011915 None:intergenic 30.0%
TCCTTAATTCTATTTCCTCT+TGG - chr2.2:59011798-59011817 MS.gene02023:intron 30.0%
TCGATGAAATTATTGATGCA+GGG - chr2.2:59011146-59011165 MS.gene02023:intron 30.0%
TCTAAAAATGTGGGAAAATG+CGG + chr2.2:59010118-59010137 None:intergenic 30.0%
TGAAAATGAGGTAAAAACCT+AGG + chr2.2:59012194-59012213 None:intergenic 30.0%
TGCTAAAAATTGAGTGAAGT+TGG - chr2.2:59010421-59010440 MS.gene02023:intron 30.0%
TGTATATGACCTACTTTGAT+GGG - chr2.2:59010782-59010801 MS.gene02023:intron 30.0%
TTGTATATGACCTACTTTGA+TGG - chr2.2:59010781-59010800 MS.gene02023:intron 30.0%
! CTCTTTGGAAGTTTGAATAA+TGG - chr2.2:59011650-59011669 MS.gene02023:intron 30.0%
! TGAAGATAAGAGATTTTGTG+AGG - chr2.2:59010467-59010486 MS.gene02023:intron 30.0%
! TGCTCCTTATTTATTTGTCT+CGG - chr2.2:59012241-59012260 MS.gene02023:intron 30.0%
! TTTAGTCTTCAACATTTGCA+TGG - chr2.2:59009734-59009753 MS.gene02023:intron 30.0%
! TTTTTATGCTATCAAAGGGA+AGG + chr2.2:59012410-59012429 None:intergenic 30.0%
!!! CTTGGTTTCTTTTTTGTTGT+GGG - chr2.2:59011816-59011835 MS.gene02023:intron 30.0%
!!! GTTTTAGAACCATTAGTTTG+TGG - chr2.2:59010353-59010372 MS.gene02023:intron 30.0%
!!! TCTTGGTTTCTTTTTTGTTG+TGG - chr2.2:59011815-59011834 MS.gene02023:intron 30.0%
!!! TTGATGGGTTGTTTTTATGT+GGG - chr2.2:59010797-59010816 MS.gene02023:intron 30.0%
!!! TTTGATGGGTTGTTTTTATG+TGG - chr2.2:59010796-59010815 MS.gene02023:intron 30.0%
AAAAGCTTCCTTTGCACTAT+TGG + chr2.2:59010626-59010645 None:intergenic 35.0%
AATACTATAGCTGGGAAAGT+TGG - chr2.2:59012333-59012352 MS.gene02023:intron 35.0%
ACCATGACTTAACCTTAGAA+GGG - chr2.2:59011737-59011756 MS.gene02023:intron 35.0%
ACTACTCCAAATACTATAGC+TGG - chr2.2:59012324-59012343 MS.gene02023:intron 35.0%
ACTTTCCCAGCTATAGTATT+TGG + chr2.2:59012333-59012352 None:intergenic 35.0%
ATATTTAGTGAGACTAGGGA+AGG + chr2.2:59012268-59012287 None:intergenic 35.0%
ATGGCAAATAATGAGATCAC+TGG + chr2.2:59011558-59011577 None:intergenic 35.0%
CAATTGTGATAGAGAGGAAT+TGG + chr2.2:59012151-59012170 None:intergenic 35.0%
CAGTAACAATTGTGATAGAG+AGG + chr2.2:59012157-59012176 None:intergenic 35.0%
CTACTCCAAATACTATAGCT+GGG - chr2.2:59012325-59012344 MS.gene02023:intron 35.0%
GAAGTCCTTGACAATATTAC+TGG - chr2.2:59011045-59011064 MS.gene02023:CDS 35.0%
GATCTTCACTTCTTTGTTAC+TGG - chr2.2:59010873-59010892 MS.gene02023:intron 35.0%
GGAAGTAATAGTACAGATTC+TGG - chr2.2:59012354-59012373 MS.gene02023:intron 35.0%
TATTTAGTGAGACTAGGGAA+GGG + chr2.2:59012267-59012286 None:intergenic 35.0%
TCCAAACTCTAAACCAATCA+GGG + chr2.2:59011535-59011554 None:intergenic 35.0%
TCTTCCAAAATTCAACTCGT+AGG - chr2.2:59011260-59011279 MS.gene02023:CDS 35.0%
TGTTTGAACGTTTATCTCTG+AGG + chr2.2:59012055-59012074 None:intergenic 35.0%
! AAGGTGAAGGTCTTTTAACA+AGG + chr2.2:59012001-59012020 None:intergenic 35.0%
! AGGTGAAGGTCTTTTAACAA+GGG + chr2.2:59012000-59012019 None:intergenic 35.0%
! ATCCTTCTTTTGGATTCTGA+TGG - chr2.2:59010559-59010578 MS.gene02023:intron 35.0%
! ATGCAGCAGTATTTAGCTTA+GGG - chr2.2:59009906-59009925 MS.gene02023:intron 35.0%
! ATGTCTTTTCTGGACAAATG+CGG + chr2.2:59011945-59011964 None:intergenic 35.0%
! TCCTTCTTTTGGATTCTGAT+GGG - chr2.2:59010560-59010579 MS.gene02023:intron 35.0%
! TCTTTTTGTTGAACCTTGCT+TGG - chr2.2:59010393-59010412 MS.gene02023:intron 35.0%
! TGTGAAGAACATCCTTCTTT+TGG - chr2.2:59010549-59010568 MS.gene02023:intron 35.0%
! TTTTAGCACAAAACCAAGCA+AGG + chr2.2:59010409-59010428 None:intergenic 35.0%
!! AACCATTAGTTTGTGGAAGT+TGG - chr2.2:59010360-59010379 MS.gene02023:intron 35.0%
!! ACCATTAGTTTGTGGAAGTT+GGG - chr2.2:59010361-59010380 MS.gene02023:intron 35.0%
!! CGAGTTGAATTTTGGAAGAA+AGG + chr2.2:59011259-59011278 None:intergenic 35.0%
!! GATTTTGTGAGGTGTTTTTG+AGG - chr2.2:59010478-59010497 MS.gene02023:intron 35.0%
!!! ATAGTTTTGGATGAAGCACA+AGG - chr2.2:59011615-59011634 MS.gene02023:intron 35.0%
!!! CAGGCATTTTTTGATTCAGT+TGG - chr2.2:59010936-59010955 MS.gene02023:intron 35.0%
!!! GCCGTAATATGCGTTTTTTT+AGG - chr2.2:59010060-59010079 MS.gene02023:intron 35.0%
AAAAAATGCCTGCAGAACTG+AGG + chr2.2:59010928-59010947 None:intergenic 40.0%
AAAACAAAAGTCGCACAAGG+CGG - chr2.2:59011358-59011377 MS.gene02023:intron 40.0%
AGAAAGTTTAGCCGAGTTCA+AGG - chr2.2:59010193-59010212 MS.gene02023:intron 40.0%
AGAAGGATGTTCTTCACAGA+AGG + chr2.2:59010547-59010566 None:intergenic 40.0%
AGGGCCGAGACAAATAAATA+AGG + chr2.2:59012248-59012267 None:intergenic 40.0%
CAACATACCTGTTCAGACAA+AGG + chr2.2:59012384-59012403 None:intergenic 40.0%
CCAAACTCTAAACCAATCAG+GGG + chr2.2:59011534-59011553 None:intergenic 40.0%
CCATGACTTAACCTTAGAAG+GGG - chr2.2:59011738-59011757 MS.gene02023:intron 40.0%
GAAGGATGTTCTTCACAGAA+GGG + chr2.2:59010546-59010565 None:intergenic 40.0%
GACCATGACTTAACCTTAGA+AGG - chr2.2:59011736-59011755 MS.gene02023:intron 40.0%
GACCATGACTTAACCTTAGA+AGG + chr2.2:59011755-59011736 None:intergenic 40.0%
GACTTAGTGTCTGCAAAAGA+AGG + chr2.2:59012473-59012492 None:intergenic 40.0%
GATGAAGCACAAGGTTACAT+GGG - chr2.2:59011624-59011643 MS.gene02023:intron 40.0%
GGAAGTTGAGAAAAAAGGCT+TGG + chr2.2:59012087-59012106 None:intergenic 40.0%
GTCCAAACTCTAAACCAATC+AGG + chr2.2:59011536-59011555 None:intergenic 40.0%
GTGTTATCAATCTGTCACCA+TGG - chr2.2:59011017-59011036 MS.gene02023:CDS 40.0%
GTTGGATCAAACGAAAAAGG+AGG + chr2.2:59009943-59009962 None:intergenic 40.0%
TATCAGAAAACAACCTGAGC+AGG + chr2.2:59010965-59010984 None:intergenic 40.0%
TATCTTATCCTCAGTTCTGC+AGG - chr2.2:59010917-59010936 MS.gene02023:intron 40.0%
TCAACTCCTTACCAATTGGA+CGG - chr2.2:59010311-59010330 MS.gene02023:intron 40.0%
TCAATCTGTCACCATGGAAT+TGG - chr2.2:59011023-59011042 MS.gene02023:CDS 40.0%
TCCCATCAGAATCCAAAAGA+AGG + chr2.2:59010564-59010583 None:intergenic 40.0%
TGACTTAACCTTAGAAGGCA+TGG + chr2.2:59011685-59011704 None:intergenic 40.0%
TGAGTCAACTCCTTACCAAT+TGG - chr2.2:59010307-59010326 MS.gene02023:intron 40.0%
! ATTGCCTCTGGAGGAAAAAA+TGG + chr2.2:59011077-59011096 None:intergenic 40.0%
! CATGCAGCAGTATTTAGCTT+AGG - chr2.2:59009905-59009924 MS.gene02023:intron 40.0%
! TCAGAGGGAAATGTCTTTTC+TGG + chr2.2:59011955-59011974 None:intergenic 40.0%
! TTGCCTCTGGAGGAAAAAAT+GGG + chr2.2:59011076-59011095 None:intergenic 40.0%
! TTTTCTGGACAAATGCGGTT+TGG + chr2.2:59011940-59011959 None:intergenic 40.0%
!! ACAAGGGTTTTTAAGGGTGA+AGG + chr2.2:59011984-59012003 None:intergenic 40.0%
!! AGCTCCTACGAGTTGAATTT+TGG + chr2.2:59011267-59011286 None:intergenic 40.0%
!! CCATTAGTTTGTGGAAGTTG+GGG - chr2.2:59010362-59010381 MS.gene02023:intron 40.0%
!! TGCCTTCTAAGGTTAAGTCA+TGG - chr2.2:59011685-59011704 MS.gene02023:intron 40.0%
AGAAGGGGTGACCTAAATCT+TGG - chr2.2:59011753-59011772 MS.gene02023:intron 45.0%
AGAGAGAGAGATTACGAGCT+TGG + chr2.2:59009631-59009650 None:intergenic 45.0%
AGAGAGATTACGAGCTTGGA+AGG + chr2.2:59009627-59009646 None:intergenic 45.0%
AGGGTGAAGGATAAGATCAG+AGG + chr2.2:59011971-59011990 None:intergenic 45.0%
AGGTTACATGGGTGTCTCTT+TGG - chr2.2:59011635-59011654 MS.gene02023:intron 45.0%
CACATTAGGACTTCGTTGGT+GGG + chr2.2:59010253-59010272 None:intergenic 45.0%
CACCAACGAAGTCCTAATGT+GGG - chr2.2:59010252-59010271 MS.gene02023:intron 45.0%
CCCCAACTTCCACAAACTAA+TGG + chr2.2:59010365-59010384 None:intergenic 45.0%
CTGCGAGTCTTTCATTTCCT+AGG - chr2.2:59012174-59012193 MS.gene02023:intron 45.0%
GAAATCACAATGGAGCAGCA+AGG + chr2.2:59011874-59011893 None:intergenic 45.0%
GAATACCTGATACGTACCTG+AGG - chr2.2:59011441-59011460 MS.gene02023:intron 45.0%
GATTTAGGTCACCCCTTCTA+AGG + chr2.2:59011752-59011771 None:intergenic 45.0%
GCAGACACTAAGTCAAGCAT+TGG - chr2.2:59012479-59012498 MS.gene02023:intron 45.0%
GCAGGGTATGTCATTCTCAT+AGG - chr2.2:59011163-59011182 MS.gene02023:intron 45.0%
GCTTCCTTTGCACTATTGGT+TGG + chr2.2:59010622-59010641 None:intergenic 45.0%
GGATGAAGCACAAGGTTACA+TGG - chr2.2:59011623-59011642 MS.gene02023:intron 45.0%
GGCTCTATAAGCCTTGAACT+CGG + chr2.2:59010207-59010226 None:intergenic 45.0%
GGGTGAAGGATAAGATCAGA+GGG + chr2.2:59011970-59011989 None:intergenic 45.0%
GTCAAGGACTTCCAATTCCA+TGG + chr2.2:59011037-59011056 None:intergenic 45.0%
GTGCTAGAACTATGGATGTG+CGG + chr2.2:59011852-59011871 None:intergenic 45.0%
GTGGTCCTCAATTGCAATTG+TGG - chr2.2:59010038-59010057 MS.gene02023:intron 45.0%
TACGGCCACAATTGCAATTG+AGG + chr2.2:59010046-59010065 None:intergenic 45.0%
TGAAACCTCAGGTACGTATC+AGG + chr2.2:59011449-59011468 None:intergenic 45.0%
TTGGCCAACCAATAGTGCAA+AGG - chr2.2:59010615-59010634 MS.gene02023:intron 45.0%
! TTTTTCCTCCAGAGGCAATG+TGG - chr2.2:59011078-59011097 MS.gene02023:intron 45.0%
!! CCCCTGATTGGTTTAGAGTT+TGG - chr2.2:59011531-59011550 MS.gene02023:CDS 45.0%
!! CCCCTTCTAAGGTTAAGTCA+TGG + chr2.2:59011741-59011760 None:intergenic 45.0%
!!! GGTTGTTTTTATGTGGGCAG+CGG - chr2.2:59010803-59010822 MS.gene02023:intron 45.0%
!!! TCTCCCATTTTTTCCTCCAG+AGG - chr2.2:59011070-59011089 MS.gene02023:intron 45.0%
AAGACCAATGCTCGCACTGA+AGG - chr2.2:59010673-59010692 MS.gene02023:intron 50.0%
CAGAAAACAACCTGAGCAGG+AGG + chr2.2:59010962-59010981 None:intergenic 50.0%
CAGAGGCAATGTGGACAAGA+AGG - chr2.2:59011087-59011106 MS.gene02023:intron 50.0%
CCACATTAGGACTTCGTTGG+TGG + chr2.2:59010254-59010273 None:intergenic 50.0%
CCACCAACGAAGTCCTAATG+TGG - chr2.2:59010251-59010270 MS.gene02023:intron 50.0%
CGACATTGCAACCGCAATTG+TGG - chr2.2:59010092-59010111 MS.gene02023:intron 50.0%
CTGAAGTCAGTCCGTCCAAT+TGG + chr2.2:59010325-59010344 None:intergenic 50.0%
CTTCTTGTCCACATTGCCTC+TGG + chr2.2:59011089-59011108 None:intergenic 50.0%
GGAAAATGCGGCCACAATTG+CGG + chr2.2:59010106-59010125 None:intergenic 50.0%
GGGGTGACCTAAATCTTGGA+TGG - chr2.2:59011757-59011776 MS.gene02023:intron 50.0%
GTCAGTCCGTCCAATTGGTA+AGG + chr2.2:59010320-59010339 None:intergenic 50.0%
GTGAGTGCTTCCTTGTCTAG+AGG - chr2.2:59010695-59010714 MS.gene02023:intron 50.0%
TGCAAGATGTTCCCTAGCTG+AGG + chr2.2:59012505-59012524 None:intergenic 50.0%
TGCCCACATTAGGACTTCGT+TGG + chr2.2:59010257-59010276 None:intergenic 50.0%
TGGAGCTCCTTTGTCTGAAC+AGG - chr2.2:59012374-59012393 MS.gene02023:intron 50.0%
! GAGTTGACTCATACCCTGCA+AGG + chr2.2:59010298-59010317 None:intergenic 50.0%
! GCAGCAAGGTGCTAGAACTA+TGG + chr2.2:59011860-59011879 None:intergenic 50.0%
! GCTCTAAGCCATGCCTTCTA+AGG - chr2.2:59011674-59011693 MS.gene02023:intron 50.0%
! TGTGGACAAGAAGGAAGCAC+TGG - chr2.2:59011096-59011115 MS.gene02023:intron 50.0%
!! ACCAATCAGGGGCATCTAAC+TGG + chr2.2:59011523-59011542 None:intergenic 50.0%
!! GAAGGAAGCACTGGAGAACT+TGG - chr2.2:59011105-59011124 MS.gene02023:intron 50.0%
!! TCAAGCATTGGCCTCAGCTA+GGG - chr2.2:59012491-59012510 MS.gene02023:intron 50.0%
ACTCATACCCTGCAAGGCGT+AGG + chr2.2:59010292-59010311 None:intergenic 55.0%
AGCTGAACCTACGCCTTGCA+GGG - chr2.2:59010282-59010301 MS.gene02023:intron 55.0%
CGAAGTCCTAATGTGGGCAG+CGG - chr2.2:59010258-59010277 MS.gene02023:intron 55.0%
CTCACCTTCAGTGCGAGCAT+TGG + chr2.2:59010680-59010699 None:intergenic 55.0%
CTTGTCCACATTGCCTCTGG+AGG + chr2.2:59011086-59011105 None:intergenic 55.0%
GAAGTCCTAATGTGGGCAGC+GGG - chr2.2:59010259-59010278 MS.gene02023:intron 55.0%
GCCAGTTAGATGCCCCTGAT+TGG - chr2.2:59011519-59011538 MS.gene02023:CDS 55.0%
GGATTCTGATGGGAGACGTG+TGG - chr2.2:59010570-59010589 MS.gene02023:intron 55.0%
! ATTCAGTTGGCCTCCTGCTC+AGG - chr2.2:59010949-59010968 MS.gene02023:intron 55.0%
!! GTCAAGCATTGGCCTCAGCT+AGG - chr2.2:59012490-59012509 MS.gene02023:intron 55.0%
GAGCTGAACCTACGCCTTGC+AGG - chr2.2:59010281-59010300 MS.gene02023:intron 60.0%
CAGCTCCCGCTGCCCACATT+AGG + chr2.2:59010267-59010286 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 59009618 59012542 59009618 ID=MS.gene02023
chr2.2 mRNA 59009618 59012542 59009618 ID=MS.gene02023.t1;Parent=MS.gene02023
chr2.2 exon 59012525 59012542 59012525 ID=MS.gene02023.t1.exon1;Parent=MS.gene02023.t1
chr2.2 CDS 59012525 59012542 59012525 ID=cds.MS.gene02023.t1;Parent=MS.gene02023.t1
chr2.2 exon 59011466 59011625 59011466 ID=MS.gene02023.t1.exon2;Parent=MS.gene02023.t1
chr2.2 CDS 59011466 59011625 59011466 ID=cds.MS.gene02023.t1;Parent=MS.gene02023.t1
chr2.2 exon 59011190 59011337 59011190 ID=MS.gene02023.t1.exon3;Parent=MS.gene02023.t1
chr2.2 CDS 59011190 59011337 59011190 ID=cds.MS.gene02023.t1;Parent=MS.gene02023.t1
chr2.2 exon 59010993 59011070 59010993 ID=MS.gene02023.t1.exon4;Parent=MS.gene02023.t1
chr2.2 CDS 59010993 59011070 59010993 ID=cds.MS.gene02023.t1;Parent=MS.gene02023.t1
chr2.2 exon 59009765 59009849 59009765 ID=MS.gene02023.t1.exon5;Parent=MS.gene02023.t1
chr2.2 CDS 59009765 59009849 59009765 ID=cds.MS.gene02023.t1;Parent=MS.gene02023.t1
chr2.2 exon 59009618 59009677 59009618 ID=MS.gene02023.t1.exon6;Parent=MS.gene02023.t1
chr2.2 CDS 59009618 59009677 59009618 ID=cds.MS.gene02023.t1;Parent=MS.gene02023.t1
Gene Sequence

>MS.gene02023

ATGTCTCCTTCCAAGCTCGTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACTTCAATTTCAATCTTCTCTGTTTTCAATTCTCTCAACTCCGATTTAGTCTTCAACATTTGCATGGTCACCCACGATTATCATTTTATTTTTGTTTTATTCAACAGATCTAATTTTTCTGTTTTATTGCTATTGAATTGTTATTGCAATTTAATTTTATCATCTAATTTGAATGTCAATTTTTGTGTGATTTTGATTTTGGTAGAAAATTGTAGCATGCAGCAGTATTTAGCTTAGGGTTTAACTTAGACCTCCTTTTTCGTTTGATCCAACATTTTATGTTTCTTGTTGGTAGATCACAATTTCTATATACAATGTTGTAATAATAGTTAGTAATAACTCTAAATTGTGGTCCTCAATTGCAATTGTGGCCGTAATATGCGTTTTTTTAGGTCTTTGCAACGACATTGCAACCGCAATTGTGGCCGCATTTTCCCACATTTTTAGAACCATTATTATAACAGTTTAAAGGTTTGCGTTTTAGAACAATTTTTTTTCATAAAAGAAAGTTTAGCCGAGTTCAAGGCTTATAGAGCCTATACAGAGATACTTATAGATTGCCCACCAACGAAGTCCTAATGTGGGCAGCGGGAGCTGAACCTACGCCTTGCAGGGTATGAGTCAACTCCTTACCAATTGGACGGACTGACTTCAGTTGACTACGTTTTAGAACCATTAGTTTGTGGAAGTTGGGGTATATTTATCTTTTTGTTGAACCTTGCTTGGTTTTGTGCTAAAAATTGAGTGAAGTTGGTTGAAATGAATTATTGTGATAGTTGAAGATAAGAGATTTTGTGAGGTGTTTTTGAGGAAAGTTATGATTTTGTATTGTGTGTTATTGTTAGGAGTTGAACCCTTCTGTGAAGAACATCCTTCTTTTGGATTCTGATGGGAGACGTGTGGCAGCTAAGTATTTCACAGATGATTGGCCAACCAATAGTGCAAAGGAAGCTTTTGAGAAGCTTGTATTCAACAAGACTCAGAAGACCAATGCTCGCACTGAAGGTGAGTGCTTCCTTGTCTAGAGGTATTTTTTATTTTGTGAGAAGAATTTGGAATATATTAGATTGATTGTTAATCATCACTATGTATTGTATATGACCTACTTTGATGGGTTGTTTTTATGTGGGCAGCGGAGATAACAATGTTTGAGAATAACATCGTTGTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACTGGGAGTGATGATGAAAACGAGCTTATCTTATCCTCAGTTCTGCAGGCATTTTTTGATTCAGTTGGCCTCCTGCTCAGGTTGTTTTCTGATACTTAACTGTTTATCTATGTGTGATATTCAAAGGTGTTATCAATCTGTCACCATGGAATTGGAAGTCCTTGACAATATTACTGGTTTCTCCCATTTTTTCCTCCAGAGGCAATGTGGACAAGAAGGAAGCACTGGAGAACTTGGATCTCATTCTATTGTGCATCGATGAAATTATTGATGCAGGGTATGTCATTCTCATAGGCTATTCATAATAAAAGTTATCTTCTTCCATTATTTGTTTGTTAGGTTCTTTAGATATTATATTGTTCTTGCCTTTCTTCCAAAATTCAACTCGTAGGAGCTATTTGATATATCAGAGAGAGCAATTCATCTATGCAATTAGATGATCACAATTGTTATAGTTTTTTCTCATAAAAACAAAAGTCGCACAAGGCGGTGAAATTATGACTGAAATCATTAGAAAGAAAATCTGGGTATCCTTAATCAGTGTAGATTTGAATACCTGATACGTACCTGAGGTTTCACTAATTTTTTCATACAACGACATCTATTTTTTCTGTTTTTTCACTGTTAAGCCAGTTAGATGCCCCTGATTGGTTTAGAGTTTGGACCAGTGATCTCATTATTTGCCATAGCTATTAAATGAAAAGATGTCGTTTAGATCAAAACGATAGTTTTGGATGAAGCACAAGGTTACATGGGTGTCTCTTTGGAAGTTTGAATAATGGTGCTCTAAGCCATGCCTTCTAAGGTTAAGTCATGGTCTCTTAACTCTTAAATCTAGTTTAAGAGACCATGACTTAACCTTAGAAGGGGTGACCTAAATCTTGGATGGAGTTTATGTTATTACTCGTCCTTAATTCTATTTCCTCTTGGTTTCTTTTTTGTTGTGGGATAAAATGCACCGCACATCCATAGTTCTAGCACCTTGCTGCTCCATTGTGATTTCCATAATTATAAGTCCCACTGTATTTGAATTTTAGCAAATCACTCCAAACCGCATTTGTCCAGAAAAGACATTTCCCTCTGATCTTATCCTTCACCCTTAAAAACCCTTGTTAAAAGACCTTCACCTTTATAAACTCTTCTTGAAAGATATTCTGTTTGCCTCAGAGATAAACGTTCAAACAAGTCTACTGCCAAGCCTTTTTTCTCAACTTCCTTCTTATTCATTTCCTTTGATTTGATGGATACATATAGGGCCCAATTCCTCTCTATCACAATTGTTACTGCGAGTCTTTCATTTCCTAGGTTTTTACCTCATTTTCACCTTCATATTTCTCTCTTCTTTGTTTATGCTCCTTATTTATTTGTCTCGGCCCTTCCCTAGTCTCACTAAATATTCATCTCTCCATATTTTGTGCAGTATTATTCTTGAAACTACTCCAAATACTATAGCTGGGAAAGTTGGAAGTAATAGTACAGATTCTGGAGCTCCTTTGTCTGAACAGGTATGTTGCATCCTTCCCTTTGATAGCATAAAAAAATTTAAATTAAACTCACTTATTTGGGTATAACTGTATTTCCTTCTTTTGCAGACACTAAGTCAAGCATTGGCCTCAGCTAGGGAACATCTTGCAAGATCCCTTCTTAAATGA
Protein sequence

>MS.gene02023.t1

MSPSKLELNPSVKNILLLDSDGRRVAAKYFTDDWPTNSAKEAFEKLVFNKTQKTNARTEAEITMFENNIVVYKFVQDLHFFVTGSDDENELILSSVLQAFFDSVGLLLRGNVDKKEALENLDLILLCIDEIIDAGIILETTPNTIAGKVGSNSTDSGAPLSEQTLSQALASAREHLARSLLK