Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043279.t1 | XP_004489170.1 | 95 | 180 | 9 | 0 | 1 | 180 | 1 | 180 | 5.20E-89 | 337 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043279.t1 | Q8H1F4 | 76.4 | 174 | 41 | 0 | 6 | 179 | 7 | 180 | 1.6e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043279.t1 | A0A1S2XGU1 | 95.0 | 180 | 9 | 0 | 1 | 180 | 1 | 180 | 3.8e-89 | 337.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043279 | MS.gene02023 | PPI |
| MS.gene043279 | MS.gene021666 | PPI |
| MS.gene043279 | MS.gene011220 | PPI |
| MS.gene07800 | MS.gene043279 | PPI |
| MS.gene043279 | MS.gene79635 | PPI |
| MS.gene79635 | MS.gene043279 | PPI |
| MS.gene043279 | MS.gene37394 | PPI |
| MS.gene011220 | MS.gene043279 | PPI |
| MS.gene003764 | MS.gene043279 | PPI |
| MS.gene043279 | MS.gene50077 | PPI |
| MS.gene74608 | MS.gene043279 | PPI |
| MS.gene064893 | MS.gene043279 | PPI |
| MS.gene30333 | MS.gene043279 | PPI |
| MS.gene063166 | MS.gene043279 | PPI |
| MS.gene74768 | MS.gene043279 | PPI |
| MS.gene043279 | MS.gene68223 | PPI |
| MS.gene014282 | MS.gene043279 | PPI |
| MS.gene043279 | MS.gene003223 | PPI |
| MS.gene043279 | MS.gene056700 | PPI |
| MS.gene043279 | MS.gene45686 | PPI |
| MS.gene043279 | MS.gene02789 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043279.t1 | MTR_8g017630 | 85.475 | 179 | 26 | 0 | 1 | 179 | 1 | 179 | 1.30e-113 | 320 |
| MS.gene043279.t1 | MTR_0350s0010 | 83.140 | 172 | 28 | 1 | 9 | 179 | 48 | 219 | 7.28e-104 | 297 |
| MS.gene043279.t1 | MTR_2g028750 | 73.988 | 173 | 45 | 0 | 8 | 180 | 33 | 205 | 1.13e-93 | 271 |
| MS.gene043279.t1 | MTR_7g009640 | 93.333 | 135 | 9 | 0 | 9 | 143 | 1 | 135 | 2.02e-87 | 253 |
| MS.gene043279.t1 | MTR_8g018030 | 81.356 | 59 | 11 | 0 | 7 | 65 | 8 | 66 | 3.39e-30 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043279.t1 | AT4G08520 | 76.437 | 174 | 41 | 0 | 6 | 179 | 7 | 180 | 1.20e-98 | 283 |
| MS.gene043279.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 1.15e-95 | 275 |
| MS.gene043279.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 1.15e-95 | 275 |
| MS.gene043279.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 5 | 178 | 1.15e-95 | 275 |
| MS.gene043279.t1 | AT3G09800 | 74.138 | 174 | 45 | 0 | 6 | 179 | 85 | 258 | 3.92e-94 | 274 |
| MS.gene043279.t1 | AT1G60970 | 70.520 | 173 | 51 | 0 | 8 | 180 | 5 | 177 | 5.49e-90 | 261 |
| MS.gene043279.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 58 | 179 | 18 | 139 | 2.18e-58 | 179 |
| MS.gene043279.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 58 | 179 | 18 | 139 | 2.18e-58 | 179 |
Find 21 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCGGAGTCAGCATCTA+TGG | 0.342225 | 7.2:+88260395 | None:intergenic |
| TGCCTTGACGAGATAGTTGA+TGG | 0.404780 | 7.2:-88260557 | MS.gene043279:CDS |
| AAGAGAGGCACTTGAGAACT+TGG | 0.422153 | 7.2:-88260594 | MS.gene043279:CDS |
| TGACTCCGCCTTGTCAGAAC+AGG | 0.488909 | 7.2:-88260385 | MS.gene043279:intron |
| GACCTGCATTTCTTTGTCAC+TGG | 0.516261 | 7.2:-88260895 | MS.gene043279:CDS |
| TTCCCTCAGAGTCTAAAAGA+AGG | 0.525951 | 7.2:+88262038 | None:intergenic |
| ATGCAATCACCCTTCTGTTG+AGG | 0.540407 | 7.2:-88260819 | MS.gene043279:intron |
| TGCCAGTGACAAAGAAATGC+AGG | 0.541473 | 7.2:+88260893 | None:intergenic |
| TGCAGACACTAACTCAAGCA+TGG | 0.552067 | 7.2:-88259821 | MS.gene043279:intron |
| AGCCAAAATACCTCAACAGA+AGG | 0.555442 | 7.2:+88260809 | None:intergenic |
| AAGACAAATGCTCGTACAGA+AGG | 0.576135 | 7.2:-88261926 | MS.gene043279:intron |
| GCAGACACTAACTCAAGCAT+GGG | 0.596243 | 7.2:-88259820 | MS.gene043279:intron |
| GCCAAAATACCTCAACAGAA+GGG | 0.598170 | 7.2:+88260810 | None:intergenic |
| CTCCATCAACTATCTCGTCA+AGG | 0.603291 | 7.2:+88260555 | None:intergenic |
| GTCAGCATCTATGGTGTGTG+AGG | 0.633753 | 7.2:+88260404 | None:intergenic |
| TTACACTACCTGTTCTGACA+AGG | 0.635534 | 7.2:+88260377 | None:intergenic |
| TTGACGAGATAGTTGATGGA+GGG | 0.641968 | 7.2:-88260553 | MS.gene043279:intron |
| CTTGACGAGATAGTTGATGG+AGG | 0.654429 | 7.2:-88260554 | MS.gene043279:CDS |
| GAATAATGTTGACAAAAGAG+AGG | 0.658404 | 7.2:-88260609 | MS.gene043279:CDS |
| AGGATGATACTTGAAACAAG+TGG | 0.684743 | 7.2:-88260450 | MS.gene043279:CDS |
| CACTACCTGTTCTGACAAGG+CGG | 0.717288 | 7.2:+88260380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTCATAAATTCATATT+GGG | + | chr7.2:88261820-88261839 | None:intergenic | 10.0% |
| !! | TATATGTAAAATTTATAAAC+TGG | + | chr7.2:88262936-88262955 | None:intergenic | 10.0% |
| !! | TTAATTTCATAAATTCATAT+TGG | + | chr7.2:88261821-88261840 | None:intergenic | 10.0% |
| !!! | AAATTCAATATTTTCATAAT+CGG | + | chr7.2:88262225-88262244 | None:intergenic | 10.0% |
| !!! | TTATTTTTTGTATCATTTAT+AGG | - | chr7.2:88262301-88262320 | MS.gene043279:intron | 10.0% |
| !! | ACATGATTATAAATGTTAAA+TGG | - | chr7.2:88261091-88261110 | MS.gene043279:intron | 15.0% |
| !! | TAATGATGAATAGAAAAATA+TGG | - | chr7.2:88261358-88261377 | MS.gene043279:intron | 15.0% |
| !!! | AATTAGTTTTAAAAAACGAA+TGG | + | chr7.2:88262451-88262470 | None:intergenic | 15.0% |
| !!! | TTTCTATTCATCATTATTTT+GGG | + | chr7.2:88261354-88261373 | None:intergenic | 15.0% |
| !!! | TTTTCTATTCATCATTATTT+TGG | + | chr7.2:88261355-88261374 | None:intergenic | 15.0% |
| !!! | TTTTCTCAAATTATTATTAC+CGG | - | chr7.2:88262799-88262818 | MS.gene043279:intron | 15.0% |
| !!! | TTTTGATTCTTAAAACTTAT+AGG | + | chr7.2:88259953-88259972 | None:intergenic | 15.0% |
| !! | AAAATGTCTTGTAACTTATA+AGG | - | chr7.2:88261326-88261345 | MS.gene043279:intron | 20.0% |
| !! | AAAATTAAATCATCTACAGT+CGG | - | chr7.2:88262642-88262661 | MS.gene043279:intron | 20.0% |
| !! | AGCTATTAATATTTGTGTTA+AGG | - | chr7.2:88260803-88260822 | MS.gene043279:intron | 20.0% |
| !! | ATTTGAGAAAATAGAAGTTA+TGG | + | chr7.2:88262790-88262809 | None:intergenic | 20.0% |
| !! | CAATTTATAAATCTACATCT+TGG | - | chr7.2:88260112-88260131 | MS.gene043279:intron | 20.0% |
| !! | GTAGATTTATAAATTGATGT+TGG | + | chr7.2:88260108-88260127 | None:intergenic | 20.0% |
| !! | TAATGCCATAAATTAATTCA+TGG | - | chr7.2:88260420-88260439 | MS.gene043279:CDS | 20.0% |
| !! | TATTGTGTCTATTTCAATTT+CGG | - | chr7.2:88260037-88260056 | MS.gene043279:intron | 20.0% |
| !! | TCTTTCTGTTAATTTCATTT+CGG | - | chr7.2:88262581-88262600 | MS.gene043279:intron | 20.0% |
| !! | TTAAAAGTAAAACAAGTTTG+AGG | + | chr7.2:88262981-88263000 | None:intergenic | 20.0% |
| !! | TTATTATGACATTTACTATG+TGG | - | chr7.2:88261874-88261893 | MS.gene043279:intron | 20.0% |
| !! | TTTGAATTTAGATGTCAATA+TGG | - | chr7.2:88262243-88262262 | MS.gene043279:intron | 20.0% |
| !!! | AATGTTTTATGTATGTTGTT+TGG | - | chr7.2:88261933-88261952 | MS.gene043279:CDS | 20.0% |
| !!! | AGAAGGATATTTTTTATCAT+AGG | + | chr7.2:88260880-88260899 | None:intergenic | 20.0% |
| !!! | AGTTTTGACAGTTATATTTT+AGG | - | chr7.2:88263038-88263057 | MS.gene043279:intron | 20.0% |
| !!! | ATTTTTCCCTCTTTTTTTTA+TGG | + | chr7.2:88261311-88261330 | None:intergenic | 20.0% |
| !!! | TATGCATGTTATGTTTTAAA+AGG | - | chr7.2:88261143-88261162 | MS.gene043279:intron | 20.0% |
| !!! | TATTTGTGTTAAGGTATTAT+TGG | - | chr7.2:88260812-88260831 | MS.gene043279:intron | 20.0% |
| !!! | TCAAACTTGTTTTACTTTTA+AGG | - | chr7.2:88262980-88262999 | MS.gene043279:intron | 20.0% |
| !!! | TTAAACATATCATGTTACTT+TGG | - | chr7.2:88263061-88263080 | MS.gene043279:intron | 20.0% |
| !!! | TTTAGTATTTTTGAAACACT+TGG | + | chr7.2:88260501-88260520 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCTGTTCATACT+TGG | + | chr7.2:88261488-88261507 | None:intergenic | 20.0% |
| ! | AACTTGAATGTAAAGAGAAA+GGG | + | chr7.2:88259806-88259825 | None:intergenic | 25.0% |
| ! | AATGTTCCAACTAAAGAATT+TGG | + | chr7.2:88261847-88261866 | None:intergenic | 25.0% |
| ! | ATGTCTACCATAAAAAAAAG+AGG | - | chr7.2:88261301-88261320 | MS.gene043279:intron | 25.0% |
| ! | CAATGTAACACAATTCATAA+TGG | + | chr7.2:88260707-88260726 | None:intergenic | 25.0% |
| ! | GCAATAACTACTAGTATATA+TGG | + | chr7.2:88261705-88261724 | None:intergenic | 25.0% |
| ! | TCACAATTTATATTTCTCCA+AGG | - | chr7.2:88260272-88260291 | MS.gene043279:intron | 25.0% |
| ! | TCACTGACCAAAAAAATAAA+AGG | + | chr7.2:88261642-88261661 | None:intergenic | 25.0% |
| ! | TGTCTACCATAAAAAAAAGA+GGG | - | chr7.2:88261302-88261321 | MS.gene043279:intron | 25.0% |
| !! | ACTGTGTCATACAATTTTAT+TGG | - | chr7.2:88260242-88260261 | MS.gene043279:intron | 25.0% |
| !! | TCTCTTTTACATTAGTTAGA+TGG | - | chr7.2:88259988-88260007 | MS.gene043279:intron | 25.0% |
| !! | TTTTCATTAAAATAGCATCG+CGG | - | chr7.2:88260387-88260406 | MS.gene043279:CDS | 25.0% |
| !!! | ATCTTGGTTTTCATCAATTT+GGG | - | chr7.2:88260128-88260147 | MS.gene043279:intron | 25.0% |
| !!! | TACTCCTCCTTTTATTTTTT+TGG | - | chr7.2:88261632-88261651 | MS.gene043279:intron | 25.0% |
| !!! | TCAAGTTGTGAACATTTTTA+TGG | - | chr7.2:88259819-88259838 | MS.gene043279:CDS | 25.0% |
| !!! | TTGAATGTGTTCATTTTTCA+TGG | - | chr7.2:88261443-88261462 | MS.gene043279:intron | 25.0% |
| AAAACAAATCTACCAACCTT+AGG | - | chr7.2:88261597-88261616 | MS.gene043279:intron | 30.0% | |
| AACTGTCGGATTATAATTTG+AGG | - | chr7.2:88261770-88261789 | MS.gene043279:intron | 30.0% | |
| AATTATTATTACCGGAGTCT+AGG | - | chr7.2:88262807-88262826 | MS.gene043279:intron | 30.0% | |
| ACTTCAAGTAATGGTTCAAT+TGG | + | chr7.2:88262180-88262199 | None:intergenic | 30.0% | |
| AGTAATATTGATCAAGCCTA+AGG | + | chr7.2:88261616-88261635 | None:intergenic | 30.0% | |
| ATTCATCCATTATGTGTTCA+AGG | - | chr7.2:88259915-88259934 | MS.gene043279:intron | 30.0% | |
| CAACTTGAATGTAAAGAGAA+AGG | + | chr7.2:88259807-88259826 | None:intergenic | 30.0% | |
| CTATCTTGCATAGATGAAAT+GGG | - | chr7.2:88261397-88261416 | MS.gene043279:intron | 30.0% | |
| CTGACCAAAAAAATAAAAGG+AGG | + | chr7.2:88261639-88261658 | None:intergenic | 30.0% | |
| GAATAATGTTGACAAAAGAG+AGG | - | chr7.2:88262323-88262342 | MS.gene043279:intron | 30.0% | |
| GAGTCTGATTAAGTACATTT+AGG | + | chr7.2:88261552-88261571 | None:intergenic | 30.0% | |
| TAACTGCCAAATTCTTTAGT+TGG | - | chr7.2:88261838-88261857 | MS.gene043279:intron | 30.0% | |
| TAATCATGTAAACTAGCACA+TGG | + | chr7.2:88261080-88261099 | None:intergenic | 30.0% | |
| TGTCTGCAATATGAAAAGTT+AGG | + | chr7.2:88263099-88263118 | None:intergenic | 30.0% | |
| ! | GATGTTGAAAATGGATTCAA+TGG | + | chr7.2:88260602-88260621 | None:intergenic | 30.0% |
| ! | TTTCAAGTATCATCCTTCAA+GGG | + | chr7.2:88262478-88262497 | None:intergenic | 30.0% |
| ! | TTTTTCTGTTCATACTTGGT+AGG | + | chr7.2:88261484-88261503 | None:intergenic | 30.0% |
| !! | CATCTTGGTTTTCATCAATT+TGG | - | chr7.2:88260127-88260146 | MS.gene043279:intron | 30.0% |
| !! | GATTTGTTTTCATCACATGT+TGG | + | chr7.2:88261587-88261606 | None:intergenic | 30.0% |
| !! | TCAAGTATTTTTCAGATGAC+TGG | - | chr7.2:88260929-88260948 | MS.gene043279:CDS | 30.0% |
| !! | TCTTGGTTTTCATCAATTTG+GGG | - | chr7.2:88260129-88260148 | MS.gene043279:intron | 30.0% |
| !!! | GTTACTTTTTCAGCAATAAG+TGG | + | chr7.2:88262509-88262528 | None:intergenic | 30.0% |
| AAACTAATTTCCTCCCTTGA+AGG | - | chr7.2:88262462-88262481 | MS.gene043279:intron | 35.0% | |
| ACATTTACTATGTGGAACTG+TGG | - | chr7.2:88261882-88261901 | MS.gene043279:intron | 35.0% | |
| AGGATGATACTTGAAACAAG+TGG | - | chr7.2:88262482-88262501 | MS.gene043279:intron | 35.0% | |
| ATATTGATCAAGCCTAAGGT+TGG | + | chr7.2:88261612-88261631 | None:intergenic | 35.0% | |
| CAAGTTGCAATATCAACACA+TGG | + | chr7.2:88260194-88260213 | None:intergenic | 35.0% | |
| CGCAGCCATGAATTAATTTA+TGG | + | chr7.2:88260428-88260447 | None:intergenic | 35.0% | |
| CTCCAAGGTTTCCAATAAAA+TGG | - | chr7.2:88260287-88260306 | MS.gene043279:intron | 35.0% | |
| CTCTAAATCTAACAGTACCA+CGG | - | chr7.2:88262877-88262896 | MS.gene043279:intron | 35.0% | |
| GATTGACCTTGAACACATAA+TGG | + | chr7.2:88259924-88259943 | None:intergenic | 35.0% | |
| GCAATATGAAAAGTTAGGTC+AGG | + | chr7.2:88263094-88263113 | None:intergenic | 35.0% | |
| GCATGTTTAGAAAGAGTTGA+TGG | - | chr7.2:88260773-88260792 | MS.gene043279:intron | 35.0% | |
| GCTATCTTGCATAGATGAAA+TGG | - | chr7.2:88261396-88261415 | MS.gene043279:intron | 35.0% | |
| GTTAACATTCTAGTGAGACA+CGG | - | chr7.2:88262612-88262631 | MS.gene043279:intron | 35.0% | |
| TTCTCGAAGGTTTAAATACG+AGG | - | chr7.2:88260678-88260697 | MS.gene043279:intron | 35.0% | |
| TTGCAGATCAATACTGATGT+TGG | + | chr7.2:88261673-88261692 | None:intergenic | 35.0% | |
| ! | ACTATTTTGCCAATCACTGA+TGG | - | chr7.2:88261740-88261759 | MS.gene043279:intron | 35.0% |
| ! | ATCCTTCTTTTAGACTCTGA+GGG | - | chr7.2:88260892-88260911 | MS.gene043279:CDS | 35.0% |
| ! | GCTTTTTATGTTCATGAGAC+TGG | - | chr7.2:88260751-88260770 | MS.gene043279:intron | 35.0% |
| ! | GGTAGACATTTTTCACTTTC+AGG | + | chr7.2:88261290-88261309 | None:intergenic | 35.0% |
| ! | GTGTTGATATTGCAACTTGA+TGG | - | chr7.2:88260195-88260214 | MS.gene043279:intron | 35.0% |
| ! | GTTTCAAGTATCATCCTTCA+AGG | + | chr7.2:88262479-88262498 | None:intergenic | 35.0% |
| ! | TATCCTTCTTTTAGACTCTG+AGG | - | chr7.2:88260891-88260910 | MS.gene043279:CDS | 35.0% |
| ! | TTGGTAGCTGATATGTTGTT+TGG | - | chr7.2:88261952-88261971 | MS.gene043279:CDS | 35.0% |
| ! | TTTTTCACTCCATCAGTGAT+TGG | + | chr7.2:88261752-88261771 | None:intergenic | 35.0% |
| !! | ATTCAATGGCTGATTTTGAG+TGG | + | chr7.2:88260588-88260607 | None:intergenic | 35.0% |
| !! | TAGAAAGAGTTGATGGAAGT+GGG | - | chr7.2:88260780-88260799 | MS.gene043279:intron | 35.0% |
| !! | TTAGAAAGAGTTGATGGAAG+TGG | - | chr7.2:88260779-88260798 | MS.gene043279:intron | 35.0% |
| !! | TTCAATGGCTGATTTTGAGT+GGG | + | chr7.2:88260587-88260606 | None:intergenic | 35.0% |
| !!! | GCTAGTTTTGAACTGTTTGT+TGG | + | chr7.2:88260955-88260974 | None:intergenic | 35.0% |
| !!! | GTTTTAGCTTCAGTTCTTCA+GGG | - | chr7.2:88262082-88262101 | MS.gene043279:intron | 35.0% |
| AAGACAAATGCTCGTACAGA+AGG | - | chr7.2:88261006-88261025 | MS.gene043279:intron | 40.0% | |
| AATCGATCGAGTACTAGAGA+AGG | + | chr7.2:88260553-88260572 | None:intergenic | 40.0% | |
| AGAAGGAGAGAATGTGATGA+GGG | + | chr7.2:88260536-88260555 | None:intergenic | 40.0% | |
| AGCCAAAATACCTCAACAGA+AGG | + | chr7.2:88262126-88262145 | None:intergenic | 40.0% | |
| ATGAACACATTCAAGCACCA+AGG | + | chr7.2:88261437-88261456 | None:intergenic | 40.0% | |
| ATGTGACACACCTTTCTTGT+AGG | - | chr7.2:88260846-88260865 | MS.gene043279:CDS | 40.0% | |
| ATGTGGAACTGTGGAAGTTT+AGG | - | chr7.2:88261891-88261910 | MS.gene043279:intron | 40.0% | |
| CAAAATGCAAGCGTAAAAGC+AGG | + | chr7.2:88260732-88260751 | None:intergenic | 40.0% | |
| CTGATGGAGTGAAAAACTGT+CGG | - | chr7.2:88261756-88261775 | MS.gene043279:intron | 40.0% | |
| GATCTTCTACAGCTAAAGCA+TGG | + | chr7.2:88262914-88262933 | None:intergenic | 40.0% | |
| GCAGTTGACTGAATTGATGT+TGG | - | chr7.2:88260314-88260333 | MS.gene043279:intron | 40.0% | |
| GCCAAAATACCTCAACAGAA+GGG | + | chr7.2:88262125-88262144 | None:intergenic | 40.0% | |
| GCTAAAGCATGGTACTTCAT+AGG | + | chr7.2:88262903-88262922 | None:intergenic | 40.0% | |
| GGACATGAAACCTACAAGAA+AGG | + | chr7.2:88260859-88260878 | None:intergenic | 40.0% | |
| GGCTGAACTGATGTTGAAAA+TGG | + | chr7.2:88260611-88260630 | None:intergenic | 40.0% | |
| GGGCAGAAGAAATAAAACCT+TGG | - | chr7.2:88261417-88261436 | MS.gene043279:intron | 40.0% | |
| TTACACTACCTGTTCTGACA+AGG | + | chr7.2:88262558-88262577 | None:intergenic | 40.0% | |
| TTCCCTCAGAGTCTAAAAGA+AGG | + | chr7.2:88260897-88260916 | None:intergenic | 40.0% | |
| ! | AATCGGACTAGAGATTGAAC+TGG | + | chr7.2:88262208-88262227 | None:intergenic | 40.0% |
| ! | TTTCTGGTAAAGTAGCTCTG+TGG | + | chr7.2:88260636-88260655 | None:intergenic | 40.0% |
| !! | ACACAGCACTTTGAAATCTG+AGG | + | chr7.2:88262699-88262718 | None:intergenic | 40.0% |
| !! | ACCCTTCTGTTGAGGTATTT+TGG | - | chr7.2:88262121-88262140 | MS.gene043279:intron | 40.0% |
| !! | CGCCATTTTATTGGAAACCT+TGG | + | chr7.2:88260292-88260311 | None:intergenic | 40.0% |
| !! | TTGACGAGATAGTTGATGGA+GGG | - | chr7.2:88262379-88262398 | MS.gene043279:intron | 40.0% |
| !! | TTGATGGAGGGTATGCATTT+TGG | - | chr7.2:88262391-88262410 | MS.gene043279:intron | 40.0% |
| !!! | CGTTTTAGCTTCAGTTCTTC+AGG | - | chr7.2:88262081-88262100 | MS.gene043279:intron | 40.0% |
| AATCGTATGTGTGTCTCGCA+AGG | - | chr7.2:88260450-88260469 | MS.gene043279:CDS | 45.0% | |
| ATCGTATGTGTGTCTCGCAA+GGG | - | chr7.2:88260451-88260470 | MS.gene043279:CDS | 45.0% | |
| ATGCAATCACCCTTCTGTTG+AGG | - | chr7.2:88262113-88262132 | MS.gene043279:intron | 45.0% | |
| ATGTGATGAGGGAGAAAGTG+AGG | + | chr7.2:88260525-88260544 | None:intergenic | 45.0% | |
| CAAGTATCATCCTTCAAGGG+AGG | + | chr7.2:88262475-88262494 | None:intergenic | 45.0% | |
| CTCCATCAACTATCTCGTCA+AGG | + | chr7.2:88262380-88262399 | None:intergenic | 45.0% | |
| CTGGCGAGAACTTCAAGTAA+TGG | + | chr7.2:88262189-88262208 | None:intergenic | 45.0% | |
| GACCTGCATTTCTTTGTCAC+TGG | - | chr7.2:88262037-88262056 | MS.gene043279:CDS | 45.0% | |
| GAGAAGGAGAGAATGTGATG+AGG | + | chr7.2:88260537-88260556 | None:intergenic | 45.0% | |
| GCAGACACTAACTCAAGCAT+GGG | - | chr7.2:88263112-88263131 | MS.gene043279:intron | 45.0% | |
| GGTGTGTCACATGATACTTG+TGG | + | chr7.2:88260838-88260857 | None:intergenic | 45.0% | |
| TGAGCGTGAGTGATTGTAGT+GGG | - | chr7.2:88261231-88261250 | MS.gene043279:intron | 45.0% | |
| TGCAGACACTAACTCAAGCA+TGG | - | chr7.2:88263111-88263130 | MS.gene043279:intron | 45.0% | |
| TGCCAGTGACAAAGAAATGC+AGG | + | chr7.2:88262042-88262061 | None:intergenic | 45.0% | |
| TGCCTTGACGAGATAGTTGA+TGG | - | chr7.2:88262375-88262394 | MS.gene043279:intron | 45.0% | |
| TGTGATGAGGGAGAAAGTGA+GGG | + | chr7.2:88260524-88260543 | None:intergenic | 45.0% | |
| TTGAGCGTGAGTGATTGTAG+TGG | - | chr7.2:88261230-88261249 | MS.gene043279:intron | 45.0% | |
| ! | AGCACTAGTCGCTTTCTCAA+AGG | + | chr7.2:88260659-88260678 | None:intergenic | 45.0% |
| ! | GTCGCTTTCTCAAAGGTTTC+TGG | + | chr7.2:88260652-88260671 | None:intergenic | 45.0% |
| ! | TGGTAAAGTAGCTCTGTGGT+TGG | + | chr7.2:88260632-88260651 | None:intergenic | 45.0% |
| !! | AAGAGAGGCACTTGAGAACT+TGG | - | chr7.2:88262338-88262357 | MS.gene043279:intron | 45.0% |
| !! | AATGGCTGATTTTGAGTGGG+AGG | + | chr7.2:88260584-88260603 | None:intergenic | 45.0% |
| !! | CAACTGCGACGCCATTTTAT+TGG | + | chr7.2:88260301-88260320 | None:intergenic | 45.0% |
| !! | CTTGACGAGATAGTTGATGG+AGG | - | chr7.2:88262378-88262397 | MS.gene043279:intron | 45.0% |
| AAGCGACTAGTGCTTCTCGA+AGG | - | chr7.2:88260665-88260684 | MS.gene043279:intron | 50.0% | |
| CAACACTGACACCTAGACTC+CGG | + | chr7.2:88262821-88262840 | None:intergenic | 50.0% | |
| CACAAGTGTCAGTGCCATGT+CGG | + | chr7.2:88262759-88262778 | None:intergenic | 50.0% | |
| CACTACCTGTTCTGACAAGG+CGG | + | chr7.2:88262555-88262574 | None:intergenic | 50.0% | |
| GTCAGCATCTATGGTGTGTG+AGG | + | chr7.2:88262531-88262550 | None:intergenic | 50.0% | |
| GTGTGTTTGAGTGTCCGACA+TGG | - | chr7.2:88262742-88262761 | MS.gene043279:intron | 50.0% | |
| !! | GCTGATTTTGAGTGGGAGGA+TGG | + | chr7.2:88260580-88260599 | None:intergenic | 50.0% |
| CAAGGCGGAGTCAGCATCTA+TGG | + | chr7.2:88262540-88262559 | None:intergenic | 55.0% | |
| GCATGGTACTTCATAGGCCG+TGG | + | chr7.2:88262897-88262916 | None:intergenic | 55.0% | |
| TGACTCCGCCTTGTCAGAAC+AGG | - | chr7.2:88262547-88262566 | MS.gene043279:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 88259779 | 88263175 | 88259779 | ID=MS.gene043279 |
| chr7.2 | mRNA | 88259779 | 88263175 | 88259779 | ID=MS.gene043279.t1;Parent=MS.gene043279 |
| chr7.2 | exon | 88263164 | 88263175 | 88263164 | ID=MS.gene043279.t1.exon1;Parent=MS.gene043279.t1 |
| chr7.2 | CDS | 88263164 | 88263175 | 88263164 | ID=cds.MS.gene043279.t1;Parent=MS.gene043279.t1 |
| chr7.2 | exon | 88261927 | 88262086 | 88261927 | ID=MS.gene043279.t1.exon2;Parent=MS.gene043279.t1 |
| chr7.2 | CDS | 88261927 | 88262086 | 88261927 | ID=cds.MS.gene043279.t1;Parent=MS.gene043279.t1 |
| chr7.2 | exon | 88260820 | 88260967 | 88260820 | ID=MS.gene043279.t1.exon3;Parent=MS.gene043279.t1 |
| chr7.2 | CDS | 88260820 | 88260967 | 88260820 | ID=cds.MS.gene043279.t1;Parent=MS.gene043279.t1 |
| chr7.2 | exon | 88260554 | 88260631 | 88260554 | ID=MS.gene043279.t1.exon4;Parent=MS.gene043279.t1 |
| chr7.2 | CDS | 88260554 | 88260631 | 88260554 | ID=cds.MS.gene043279.t1;Parent=MS.gene043279.t1 |
| chr7.2 | exon | 88260386 | 88260470 | 88260386 | ID=MS.gene043279.t1.exon5;Parent=MS.gene043279.t1 |
| chr7.2 | CDS | 88260386 | 88260470 | 88260386 | ID=cds.MS.gene043279.t1;Parent=MS.gene043279.t1 |
| chr7.2 | exon | 88259779 | 88259838 | 88259779 | ID=MS.gene043279.t1.exon6;Parent=MS.gene043279.t1 |
| chr7.2 | CDS | 88259779 | 88259838 | 88259779 | ID=cds.MS.gene043279.t1;Parent=MS.gene043279.t1 |
| Gene Sequence |
| Protein sequence |
