Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74608.t1 | CAI29267.1 | 97.7 | 177 | 4 | 0 | 3 | 179 | 6 | 182 | 1.30E-87 | 332.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74608.t1 | Q940S5 | 75.1 | 177 | 44 | 0 | 3 | 179 | 1 | 177 | 3.0e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74608.t1 | G7IFU6 | 97.7 | 177 | 4 | 0 | 3 | 179 | 29 | 205 | 9.3e-88 | 332.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051903 | MS.gene74608 | 0.813906 | 2.02E-51 | -1.69E-46 |
| MS.gene057130 | MS.gene74608 | 0.831022 | 2.11E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene74608 | 0.811185 | 7.94E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065068 | MS.gene74608 | PPI |
| MS.gene034150 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene63417 | PPI |
| MS.gene76242 | MS.gene74608 | PPI |
| MS.gene053143 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene056700 | PPI |
| MS.gene74608 | MS.gene45686 | PPI |
| MS.gene07800 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene38302 | PPI |
| MS.gene74608 | MS.gene68223 | PPI |
| MS.gene74608 | MS.gene021666 | PPI |
| MS.gene064893 | MS.gene74608 | PPI |
| MS.gene74984 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene011220 | PPI |
| MS.gene74608 | MS.gene029335 | PPI |
| MS.gene30333 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene043279 | PPI |
| MS.gene063166 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene79635 | PPI |
| MS.gene74608 | MS.gene37394 | PPI |
| MS.gene003764 | MS.gene74608 | PPI |
| MS.gene054585 | MS.gene74608 | PPI |
| MS.gene029334 | MS.gene74608 | PPI |
| MS.gene74768 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene50077 | PPI |
| MS.gene74608 | MS.gene74983 | PPI |
| MS.gene76243 | MS.gene74608 | PPI |
| MS.gene74608 | MS.gene065067 | PPI |
| MS.gene014282 | MS.gene74608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74608.t1 | MTR_2g028750 | 97.740 | 177 | 4 | 0 | 3 | 179 | 29 | 205 | 6.25e-126 | 352 |
| MS.gene74608.t1 | MTR_8g017630 | 75.287 | 174 | 43 | 0 | 5 | 178 | 6 | 179 | 2.13e-92 | 267 |
| MS.gene74608.t1 | MTR_0350s0010 | 73.099 | 171 | 45 | 1 | 9 | 178 | 49 | 219 | 6.62e-86 | 252 |
| MS.gene74608.t1 | MTR_7g009640 | 75.000 | 128 | 32 | 0 | 9 | 136 | 2 | 129 | 1.37e-70 | 211 |
| MS.gene74608.t1 | MTR_8g018030 | 65.000 | 60 | 21 | 0 | 5 | 64 | 7 | 66 | 3.05e-23 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74608.t1 | AT1G60970 | 75.141 | 177 | 44 | 0 | 3 | 179 | 1 | 177 | 8.14e-97 | 278 |
| MS.gene74608.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 7 | 178 | 7 | 178 | 9.27e-92 | 265 |
| MS.gene74608.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 7 | 178 | 7 | 178 | 9.27e-92 | 265 |
| MS.gene74608.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 7 | 178 | 7 | 178 | 9.27e-92 | 265 |
| MS.gene74608.t1 | AT4G08520 | 71.512 | 172 | 49 | 0 | 7 | 178 | 9 | 180 | 1.73e-90 | 262 |
| MS.gene74608.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 7 | 178 | 87 | 258 | 2.86e-90 | 264 |
| MS.gene74608.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 57 | 178 | 18 | 139 | 4.71e-61 | 186 |
| MS.gene74608.t1 | AT3G09800 | 71.311 | 122 | 35 | 0 | 57 | 178 | 18 | 139 | 4.71e-61 | 186 |
Find 35 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCCAGCTATAGTATT+TGG | 0.152147 | 2.3:+60653626 | None:intergenic |
| TGTGAAGAACATCTTTCTTT+TGG | 0.214773 | 2.3:-60655411 | MS.gene74608:CDS |
| GATCTTCACTTCTTTGTTAC+TGG | 0.233863 | 2.3:-60655086 | MS.gene74608:CDS |
| AAAAGCTTCCTTTGCACTAT+TGG | 0.246999 | 2.3:+60655337 | None:intergenic |
| GGAAGTAATAGTACAGATTC+TGG | 0.313738 | 2.3:-60653602 | MS.gene74608:CDS |
| ATTCAGTTGGCCTCCTGCTC+AGG | 0.331455 | 2.3:-60655010 | MS.gene74608:intron |
| TGGAGCTCCTTTGTCTGAAC+AGG | 0.379095 | 2.3:-60653582 | MS.gene74608:intron |
| TTCATGTAGTTCATTTAAGA+AGG | 0.405897 | 2.3:+60653426 | None:intergenic |
| ACTACTCCAAATACTATAGC+TGG | 0.418010 | 2.3:-60653632 | MS.gene74608:CDS |
| GAAGGAAGCACTGGAGAACT+TGG | 0.432743 | 2.3:-60654852 | MS.gene74608:CDS |
| ATCGATGAAATTATTGATGC+AGG | 0.435159 | 2.3:-60654812 | MS.gene74608:CDS |
| CTAAGTATTTCACAGATGAT+TGG | 0.437609 | 2.3:-60655364 | MS.gene74608:CDS |
| TAACAAAGAAGTGAAGATCT+TGG | 0.449077 | 2.3:+60655090 | None:intergenic |
| ATCTTCACTTCTTTGTTACT+GGG | 0.467745 | 2.3:-60655085 | MS.gene74608:CDS |
| AATACTATAGCTGGGAAAGT+TGG | 0.483190 | 2.3:-60653623 | MS.gene74608:CDS |
| TATCTTATCCTCAGTTCTGC+AGG | 0.484498 | 2.3:-60655042 | MS.gene74608:CDS |
| GCTTCCTTTGCACTATTGGT+TGG | 0.497397 | 2.3:+60655341 | None:intergenic |
| TATCAGAAAACAACCTGAGC+AGG | 0.503709 | 2.3:+60654997 | None:intergenic |
| GTCAAGCATTGGCCTCAGCT+AGG | 0.506234 | 2.3:-60653466 | MS.gene74608:CDS |
| AGAAAGATGTTCTTCACAGA+AGG | 0.510757 | 2.3:+60655416 | None:intergenic |
| GCAGACACTAAGTCAAGCAT+TGG | 0.516098 | 2.3:-60653477 | MS.gene74608:intron |
| TCAAGCATTGGCCTCAGCTA+GGG | 0.518417 | 2.3:-60653465 | MS.gene74608:CDS |
| CTCACCTTCAGTGCGAGCAT+TGG | 0.533277 | 2.3:+60655283 | None:intergenic |
| CAGAGGCAATGTGGACAAGA+AGG | 0.539823 | 2.3:-60654870 | MS.gene74608:CDS |
| TGTGGACAAGAAGGAAGCAC+TGG | 0.543071 | 2.3:-60654861 | MS.gene74608:CDS |
| AAGACCAATGCTCGCACTGA+AGG | 0.548318 | 2.3:-60655287 | MS.gene74608:intron |
| TCATGTAGTTCATTTAAGAA+GGG | 0.561156 | 2.3:+60653427 | None:intergenic |
| GAAAGATGTTCTTCACAGAA+GGG | 0.568085 | 2.3:+60655417 | None:intergenic |
| CTACTCCAAATACTATAGCT+GGG | 0.575062 | 2.3:-60653631 | MS.gene74608:CDS |
| TCGATGAAATTATTGATGCA+GGG | 0.579583 | 2.3:-60654811 | MS.gene74608:intron |
| CAACATACCTGTTCAGACAA+AGG | 0.612109 | 2.3:+60653575 | None:intergenic |
| TGCAAGATGTTCCCTAGCTG+AGG | 0.615227 | 2.3:+60653454 | None:intergenic |
| GGATTCTGACGGGAGACGTG+TGG | 0.626708 | 2.3:-60655390 | MS.gene74608:CDS |
| CAGAAAACAACCTGAGCAGG+AGG | 0.629118 | 2.3:+60655000 | None:intergenic |
| TTGGCCAACCAATAGTGCAA+AGG | 0.655463 | 2.3:-60655345 | MS.gene74608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAAACTCACTTATTT+GGG | - | chr2.3:60655906-60655925 | MS.gene74608:intron | 15.0% |
| !! | TATAATTATTGAAATCACAA+TGG | + | chr2.3:60655354-60655373 | None:intergenic | 15.0% |
| !! | TTAAATTAAACTCACTTATT+TGG | - | chr2.3:60655905-60655924 | MS.gene74608:intron | 15.0% |
| !!! | AAATTTTTTTATGCTATCAA+AGG | + | chr2.3:60655887-60655906 | None:intergenic | 15.0% |
| !!! | AATAATGGTTCTAAAAATAT+GGG | + | chr2.3:60653595-60653614 | None:intergenic | 15.0% |
| !!! | AATTTTTTTATGCTATCAAA+GGG | + | chr2.3:60655886-60655905 | None:intergenic | 15.0% |
| !!! | ATCTTTTCATTTAATAACTA+TGG | + | chr2.3:60655050-60655069 | None:intergenic | 15.0% |
| !!! | TAATAATGGTTCTAAAAATA+TGG | + | chr2.3:60653596-60653615 | None:intergenic | 15.0% |
| !! | AAATCATTAGAAAGAAAATC+AGG | - | chr2.3:60654868-60654887 | MS.gene74608:CDS | 20.0% |
| !! | AATCATTAGAAAGAAAATCA+GGG | - | chr2.3:60654869-60654888 | MS.gene74608:CDS | 20.0% |
| !! | ATCTATAAGTATCTCTATAT+AGG | + | chr2.3:60653696-60653715 | None:intergenic | 20.0% |
| !! | CCATTATTATAACAGTTTAA+AGG | - | chr2.3:60653607-60653626 | MS.gene74608:CDS | 20.0% |
| !! | CCTTTAAACTGTTATAATAA+TGG | + | chr2.3:60653610-60653629 | None:intergenic | 20.0% |
| !!! | TTAGTAATAGCTCTAAATTA+TGG | - | chr2.3:60653487-60653506 | MS.gene74608:intron | 20.0% |
| !!! | TTTATTTTGTGAGAAGAATT+TGG | - | chr2.3:60654191-60654210 | MS.gene74608:intron | 20.0% |
| ! | ACCTAAAAAAACGCATATTA+CGG | + | chr2.3:60653532-60653551 | None:intergenic | 25.0% |
| ! | ACTTCCATTATTTGTTTGTT+AGG | - | chr2.3:60654679-60654698 | MS.gene74608:intron | 25.0% |
| ! | AGAACCTAACAAACAAATAA+TGG | + | chr2.3:60654686-60654705 | None:intergenic | 25.0% |
| ! | ATAAAAAATACCTCTAGACA+AGG | + | chr2.3:60654176-60654195 | None:intergenic | 25.0% |
| ! | ATATGTATCCATCAAATCAA+AGG | + | chr2.3:60655593-60655612 | None:intergenic | 25.0% |
| ! | ATCAAAGGAAATGAATAAGA+AGG | + | chr2.3:60655578-60655597 | None:intergenic | 25.0% |
| ! | CTTTCAAGAAGAGTTTATAA+AGG | + | chr2.3:60655490-60655509 | None:intergenic | 25.0% |
| ! | GAATAATACTGCACAAAATA+TGG | + | chr2.3:60655771-60655790 | None:intergenic | 25.0% |
| ! | TATCTATGTGTGATATTCAA+AGG | - | chr2.3:60654464-60654483 | MS.gene74608:intron | 25.0% |
| ! | TCTAAAAATATGGGAAAATG+CGG | + | chr2.3:60653586-60653605 | None:intergenic | 25.0% |
| ! | TGCTAAAATTCAAATACAGT+GGG | + | chr2.3:60655380-60655399 | None:intergenic | 25.0% |
| ! | TTGCTAAAATTCAAATACAG+TGG | + | chr2.3:60655381-60655400 | None:intergenic | 25.0% |
| !! | ATTCAAATCTACACTGATTA+AGG | + | chr2.3:60654898-60654917 | None:intergenic | 25.0% |
| !! | CTTTTAACAAGGGTTTTTAA+GGG | + | chr2.3:60655460-60655479 | None:intergenic | 25.0% |
| !! | TCTTTTAACAAGGGTTTTTA+AGG | + | chr2.3:60655461-60655480 | None:intergenic | 25.0% |
| !! | TGATTTGATGGATACATATA+GGG | - | chr2.3:60655594-60655613 | MS.gene74608:intron | 25.0% |
| !! | TTAGATCAAAACGATAGTTT+TGG | - | chr2.3:60655075-60655094 | MS.gene74608:CDS | 25.0% |
| !! | TTGATTTGATGGATACATAT+AGG | - | chr2.3:60655593-60655612 | MS.gene74608:intron | 25.0% |
| !! | TTGTATTGTGTGTTATTGTT+AGG | - | chr2.3:60653981-60654000 | MS.gene74608:intron | 25.0% |
| !!! | ATTCATTTCCTTTGATTTGA+TGG | - | chr2.3:60655582-60655601 | MS.gene74608:intron | 25.0% |
| AAGAAGGAAGTTGAGAAAAA+AGG | + | chr2.3:60655562-60655581 | None:intergenic | 30.0% | |
| AATTGTGATAGAGAGGAATT+GGG | + | chr2.3:60655620-60655639 | None:intergenic | 30.0% | |
| ACAACAAAAAAGAAACCAAG+AGG | + | chr2.3:60655286-60655305 | None:intergenic | 30.0% | |
| ACCAAGAGGAAATAGAATTA+AGG | + | chr2.3:60655272-60655291 | None:intergenic | 30.0% | |
| AGAAGAGTTTATAAAGGTGA+AGG | + | chr2.3:60655484-60655503 | None:intergenic | 30.0% | |
| AGATGAATATTTAGTGAGAC+TGG | + | chr2.3:60655746-60655765 | None:intergenic | 30.0% | |
| ATAAAAACAAAAGTCGCACA+AGG | - | chr2.3:60654828-60654847 | MS.gene74608:CDS | 30.0% | |
| ATAAACTCCATCCAAGATTT+AGG | + | chr2.3:60655240-60655259 | None:intergenic | 30.0% | |
| ATCGATGAAATTATTGATGC+AGG | - | chr2.3:60654616-60654635 | MS.gene74608:intron | 30.0% | |
| ATCTTCACTTCTTTGTTACT+GGG | - | chr2.3:60654343-60654362 | MS.gene74608:intron | 30.0% | |
| ATGAATATTTAGTGAGACTG+GGG | + | chr2.3:60655744-60655763 | None:intergenic | 30.0% | |
| CAAAGAAGAGAGAAATATGA+AGG | + | chr2.3:60655689-60655708 | None:intergenic | 30.0% | |
| CTAAGTATTTCACAGATGAT+TGG | - | chr2.3:60654064-60654083 | MS.gene74608:intron | 30.0% | |
| GAAAAAATTAGTGAAACCTC+AGG | + | chr2.3:60654933-60654952 | None:intergenic | 30.0% | |
| GAAATATGAAGGTGAAAATG+AGG | + | chr2.3:60655678-60655697 | None:intergenic | 30.0% | |
| GATGAATATTTAGTGAGACT+GGG | + | chr2.3:60655745-60655764 | None:intergenic | 30.0% | |
| TAAAAACAACCCATCAAAGT+AGG | + | chr2.3:60654262-60654281 | None:intergenic | 30.0% | |
| TAACAAAGAAGTGAAGATCT+TGG | + | chr2.3:60654341-60654360 | None:intergenic | 30.0% | |
| TCCTTAATTCTATTTCCTCT+TGG | - | chr2.3:60655268-60655287 | MS.gene74608:intron | 30.0% | |
| TCGATGAAATTATTGATGCA+GGG | - | chr2.3:60654617-60654636 | MS.gene74608:intron | 30.0% | |
| TCTTCCAAAATTCAAATCGT+AGG | - | chr2.3:60654731-60654750 | MS.gene74608:intron | 30.0% | |
| TGAAAATGAGGTAAAAACCT+AGG | + | chr2.3:60655666-60655685 | None:intergenic | 30.0% | |
| TGCTAAAAATTGAGTGAAGT+TGG | - | chr2.3:60653889-60653908 | MS.gene74608:intron | 30.0% | |
| TGTATATGACCTACTTTGAT+GGG | - | chr2.3:60654250-60654269 | MS.gene74608:intron | 30.0% | |
| TTGTATATGACCTACTTTGA+TGG | - | chr2.3:60654249-60654268 | MS.gene74608:intron | 30.0% | |
| ! | ATCTTTCTTTTGGATTCTGA+CGG | - | chr2.3:60654027-60654046 | MS.gene74608:intron | 30.0% |
| ! | CTCTTTGGAAGTTTGAATAA+TGG | - | chr2.3:60655123-60655142 | MS.gene74608:CDS | 30.0% |
| ! | TGAAGATAAGAGATTTTGTG+AGG | - | chr2.3:60653935-60653954 | MS.gene74608:intron | 30.0% |
| ! | TGCTCCTTATTTATTTGTCT+CGG | - | chr2.3:60655713-60655732 | MS.gene74608:intron | 30.0% |
| ! | TGTGAAGAACATCTTTCTTT+TGG | - | chr2.3:60654017-60654036 | MS.gene74608:intron | 30.0% |
| ! | TTTTTATGCTATCAAAGGGA+AGG | + | chr2.3:60655882-60655901 | None:intergenic | 30.0% |
| !! | CGATTTGAATTTTGGAAGAA+AGG | + | chr2.3:60654730-60654749 | None:intergenic | 30.0% |
| !!! | CTTGGTTTCTTTTTTGTTGT+GGG | - | chr2.3:60655286-60655305 | MS.gene74608:intron | 30.0% |
| !!! | GTTTTAGAACCATTAGTTTG+TGG | - | chr2.3:60653821-60653840 | MS.gene74608:intron | 30.0% |
| !!! | TCTTGGTTTCTTTTTTGTTG+TGG | - | chr2.3:60655285-60655304 | MS.gene74608:intron | 30.0% |
| AAAAGCTTCCTTTGCACTAT+TGG | + | chr2.3:60654094-60654113 | None:intergenic | 35.0% | |
| AATACTATAGCTGGGAAAGT+TGG | - | chr2.3:60655805-60655824 | MS.gene74608:intron | 35.0% | |
| ACCATGACTTAACCTTAGAA+GGG | - | chr2.3:60655210-60655229 | MS.gene74608:intron | 35.0% | |
| ACTACTCCAAATACTATAGC+TGG | - | chr2.3:60655796-60655815 | MS.gene74608:intron | 35.0% | |
| ACTTTCCCAGCTATAGTATT+TGG | + | chr2.3:60655805-60655824 | None:intergenic | 35.0% | |
| AGAAAGATGTTCTTCACAGA+AGG | + | chr2.3:60654015-60654034 | None:intergenic | 35.0% | |
| AGAAGCCAGTAATATTGTCA+AGG | + | chr2.3:60654522-60654541 | None:intergenic | 35.0% | |
| ATGGCAAATAATGAGATCAC+TGG | + | chr2.3:60655031-60655050 | None:intergenic | 35.0% | |
| CAATTGTGATAGAGAGGAAT+TGG | + | chr2.3:60655621-60655640 | None:intergenic | 35.0% | |
| CAGTAACAATTGTGATAGAG+AGG | + | chr2.3:60655627-60655646 | None:intergenic | 35.0% | |
| CTACTCCAAATACTATAGCT+GGG | - | chr2.3:60655797-60655816 | MS.gene74608:intron | 35.0% | |
| GAAAGATGTTCTTCACAGAA+GGG | + | chr2.3:60654014-60654033 | None:intergenic | 35.0% | |
| GAAGTCCTTGACAATATTAC+TGG | - | chr2.3:60654514-60654533 | MS.gene74608:intron | 35.0% | |
| GATCTTCACTTCTTTGTTAC+TGG | - | chr2.3:60654342-60654361 | MS.gene74608:intron | 35.0% | |
| GGAAGTAATAGTACAGATTC+TGG | - | chr2.3:60655826-60655845 | MS.gene74608:intron | 35.0% | |
| TCCAAACTCTAAACCAATCA+GGG | + | chr2.3:60655008-60655027 | None:intergenic | 35.0% | |
| TGTTTGAACGTTTATCTCTG+AGG | + | chr2.3:60655525-60655544 | None:intergenic | 35.0% | |
| ! | AAGGTGAAGGTCTTTTAACA+AGG | + | chr2.3:60655471-60655490 | None:intergenic | 35.0% |
| ! | AGCTCCTACGATTTGAATTT+TGG | + | chr2.3:60654738-60654757 | None:intergenic | 35.0% |
| ! | AGGTGAAGGTCTTTTAACAA+GGG | + | chr2.3:60655470-60655489 | None:intergenic | 35.0% |
| ! | ATGTCTTTTCTGGACAAATG+CGG | + | chr2.3:60655415-60655434 | None:intergenic | 35.0% |
| ! | TCTTTCTTTTGGATTCTGAC+GGG | - | chr2.3:60654028-60654047 | MS.gene74608:intron | 35.0% |
| ! | TCTTTTTGTTGAACCTTGCT+TGG | - | chr2.3:60653861-60653880 | MS.gene74608:intron | 35.0% |
| ! | TTTTAGCACAAAACCAAGCA+AGG | + | chr2.3:60653877-60653896 | None:intergenic | 35.0% |
| !! | AACCATTAGTTTGTGGAAGT+TGG | - | chr2.3:60653828-60653847 | MS.gene74608:intron | 35.0% |
| !! | ACCATTAGTTTGTGGAAGTT+GGG | - | chr2.3:60653829-60653848 | MS.gene74608:intron | 35.0% |
| !! | GATTTTGTGAGGTGTTTTTG+AGG | - | chr2.3:60653946-60653965 | MS.gene74608:intron | 35.0% |
| !!! | ATAGTTTTGGATGAAGCACA+AGG | - | chr2.3:60655088-60655107 | MS.gene74608:CDS | 35.0% |
| !!! | CAGGCATTTTTTGATTCAGT+TGG | - | chr2.3:60654405-60654424 | MS.gene74608:intron | 35.0% |
| !!! | GCCGTAATATGCGTTTTTTT+AGG | - | chr2.3:60653528-60653547 | MS.gene74608:intron | 35.0% |
| !!! | TGATGGGTTGTTTTTATGTG+TGG | - | chr2.3:60654266-60654285 | MS.gene74608:intron | 35.0% |
| AAAAAATGCCTGCAGAACTG+AGG | + | chr2.3:60654397-60654416 | None:intergenic | 40.0% | |
| AAAACAAAAGTCGCACAAGG+CGG | - | chr2.3:60654831-60654850 | MS.gene74608:CDS | 40.0% | |
| AGAAAGTTTAGCCGAGTTCA+AGG | - | chr2.3:60653661-60653680 | MS.gene74608:intron | 40.0% | |
| AGGGCCGAGACAAATAAATA+AGG | + | chr2.3:60655720-60655739 | None:intergenic | 40.0% | |
| ATATTTAGTGAGACTGGGGA+AGG | + | chr2.3:60655740-60655759 | None:intergenic | 40.0% | |
| ATGGTCCTCAATTGCAATTG+TGG | - | chr2.3:60653506-60653525 | MS.gene74608:intron | 40.0% | |
| CAACATACCTGTTCAGACAA+AGG | + | chr2.3:60655856-60655875 | None:intergenic | 40.0% | |
| CACATTAGGACTTTGTTGGT+GGG | + | chr2.3:60653721-60653740 | None:intergenic | 40.0% | |
| CACCAACAAAGTCCTAATGT+GGG | - | chr2.3:60653720-60653739 | MS.gene74608:intron | 40.0% | |
| CCAAACTCTAAACCAATCAG+GGG | + | chr2.3:60655007-60655026 | None:intergenic | 40.0% | |
| CCATGACTTAACCTTAGAAG+GGG | - | chr2.3:60655211-60655230 | MS.gene74608:intron | 40.0% | |
| GACCATGACTTAACCTTAGA+AGG | - | chr2.3:60655209-60655228 | MS.gene74608:intron | 40.0% | |
| GACCATGACTTAACCTTAGA+AGG | + | chr2.3:60655228-60655209 | None:intergenic | 40.0% | |
| GACTTAGTGTCTGCAAAAGA+AGG | + | chr2.3:60655945-60655964 | None:intergenic | 40.0% | |
| GATGAAGCACAAGGTTACAT+GGG | - | chr2.3:60655097-60655116 | MS.gene74608:CDS | 40.0% | |
| GCATGAGTCTTTCATTTCCT+AGG | - | chr2.3:60655646-60655665 | MS.gene74608:intron | 40.0% | |
| GGAAGTTGAGAAAAAAGGCT+TGG | + | chr2.3:60655557-60655576 | None:intergenic | 40.0% | |
| GTCCAAACTCTAAACCAATC+AGG | + | chr2.3:60655009-60655028 | None:intergenic | 40.0% | |
| GTGTTATCAATCTGTCACCA+TGG | - | chr2.3:60654486-60654505 | MS.gene74608:intron | 40.0% | |
| TATCAGAAAACAACCTGAGC+AGG | + | chr2.3:60654434-60654453 | None:intergenic | 40.0% | |
| TATCTTATCCTCAGTTCTGC+AGG | - | chr2.3:60654386-60654405 | MS.gene74608:intron | 40.0% | |
| TATTTAGTGAGACTGGGGAA+GGG | + | chr2.3:60655739-60655758 | None:intergenic | 40.0% | |
| TCAACTCCTTACCAATTGGA+CGG | - | chr2.3:60653779-60653798 | MS.gene74608:intron | 40.0% | |
| TCAATCTGTCACCATGGAAT+TGG | - | chr2.3:60654492-60654511 | MS.gene74608:intron | 40.0% | |
| TGACTTAACCTTAGAAGGCA+TGG | + | chr2.3:60655158-60655177 | None:intergenic | 40.0% | |
| TGAGTCAACTCCTTACCAAT+TGG | - | chr2.3:60653775-60653794 | MS.gene74608:intron | 40.0% | |
| ! | GCCTCTGGAGGAAAAAAAAT+GGG | + | chr2.3:60654545-60654564 | None:intergenic | 40.0% |
| ! | TCAGAGGGAAATGTCTTTTC+TGG | + | chr2.3:60655425-60655444 | None:intergenic | 40.0% |
| ! | TGCCTCTGGAGGAAAAAAAA+TGG | + | chr2.3:60654546-60654565 | None:intergenic | 40.0% |
| ! | TTTTCTGGACAAATGCGGTT+TGG | + | chr2.3:60655410-60655429 | None:intergenic | 40.0% |
| !! | ACAAGGGTTTTTAAGGGTGA+AGG | + | chr2.3:60655454-60655473 | None:intergenic | 40.0% |
| !! | CCATTAGTTTGTGGAAGTTG+GGG | - | chr2.3:60653830-60653849 | MS.gene74608:intron | 40.0% |
| !! | TGCCTTCTAAGGTTAAGTCA+TGG | - | chr2.3:60655158-60655177 | MS.gene74608:intron | 40.0% |
| !!! | GTTGTTTTTATGTGTGGCAG+CGG | - | chr2.3:60654272-60654291 | MS.gene74608:intron | 40.0% |
| !!! | TCCCATTTTTTTTCCTCCAG+AGG | - | chr2.3:60654541-60654560 | MS.gene74608:intron | 40.0% |
| AGAAGGGGTGACCTAAATCT+TGG | - | chr2.3:60655226-60655245 | MS.gene74608:intron | 45.0% | |
| AGGGTGAAGGATAAGATCAG+AGG | + | chr2.3:60655441-60655460 | None:intergenic | 45.0% | |
| AGGTTACATGGGTGTCTCTT+TGG | - | chr2.3:60655108-60655127 | MS.gene74608:CDS | 45.0% | |
| CCACATTAGGACTTTGTTGG+TGG | + | chr2.3:60653722-60653741 | None:intergenic | 45.0% | |
| CCACCAACAAAGTCCTAATG+TGG | - | chr2.3:60653719-60653738 | MS.gene74608:intron | 45.0% | |
| CCCCAACTTCCACAAACTAA+TGG | + | chr2.3:60653833-60653852 | None:intergenic | 45.0% | |
| GAAATCACAATGGAGCAGCA+AGG | + | chr2.3:60655344-60655363 | None:intergenic | 45.0% | |
| GAATACCTGATACGTACCTG+AGG | - | chr2.3:60654914-60654933 | MS.gene74608:intron | 45.0% | |
| GATTTAGGTCACCCCTTCTA+AGG | + | chr2.3:60655225-60655244 | None:intergenic | 45.0% | |
| GCAGACACTAAGTCAAGCAT+TGG | - | chr2.3:60655951-60655970 | MS.gene74608:intron | 45.0% | |
| GCAGGGTATGTCATTCTCAT+AGG | - | chr2.3:60654634-60654653 | MS.gene74608:intron | 45.0% | |
| GCTTCCTTTGCACTATTGGT+TGG | + | chr2.3:60654090-60654109 | None:intergenic | 45.0% | |
| GGATGAAGCACAAGGTTACA+TGG | - | chr2.3:60655096-60655115 | MS.gene74608:CDS | 45.0% | |
| GGCTCTATAAGCCTTGAACT+CGG | + | chr2.3:60653675-60653694 | None:intergenic | 45.0% | |
| GGGTGAAGGATAAGATCAGA+GGG | + | chr2.3:60655440-60655459 | None:intergenic | 45.0% | |
| GTCAAGGACTTCCAATTCCA+TGG | + | chr2.3:60654506-60654525 | None:intergenic | 45.0% | |
| GTGCTAGAACTATGGATGTG+CGG | + | chr2.3:60655322-60655341 | None:intergenic | 45.0% | |
| TACGGCCACAATTGCAATTG+AGG | + | chr2.3:60653514-60653533 | None:intergenic | 45.0% | |
| TGAAACCTCAGGTACGTATC+AGG | + | chr2.3:60654922-60654941 | None:intergenic | 45.0% | |
| TGCCCACATTAGGACTTTGT+TGG | + | chr2.3:60653725-60653744 | None:intergenic | 45.0% | |
| TTGGCCAACCAATAGTGCAA+AGG | - | chr2.3:60654083-60654102 | MS.gene74608:intron | 45.0% | |
| ! | TTTTTCCTCCAGAGGCAATG+TGG | - | chr2.3:60654549-60654568 | MS.gene74608:intron | 45.0% |
| !! | CCCCTGATTGGTTTAGAGTT+TGG | - | chr2.3:60655004-60655023 | MS.gene74608:intron | 45.0% |
| !! | CCCCTTCTAAGGTTAAGTCA+TGG | + | chr2.3:60655214-60655233 | None:intergenic | 45.0% |
| AAAGTCCTAATGTGGGCAGC+GGG | - | chr2.3:60653727-60653746 | MS.gene74608:intron | 50.0% | |
| AAGACCAATGCTCGCACTGA+AGG | - | chr2.3:60654141-60654160 | MS.gene74608:intron | 50.0% | |
| CAAAGTCCTAATGTGGGCAG+CGG | - | chr2.3:60653726-60653745 | MS.gene74608:intron | 50.0% | |
| CAGAAAACAACCTGAGCAGG+AGG | + | chr2.3:60654431-60654450 | None:intergenic | 50.0% | |
| CAGAGGCAATGTGGACAAGA+AGG | - | chr2.3:60654558-60654577 | MS.gene74608:intron | 50.0% | |
| CGACATTGCAACCGCAATTG+TGG | - | chr2.3:60653560-60653579 | MS.gene74608:intron | 50.0% | |
| CTGAAGTCAGTCCGTCCAAT+TGG | + | chr2.3:60653793-60653812 | None:intergenic | 50.0% | |
| CTTCTTGTCCACATTGCCTC+TGG | + | chr2.3:60654560-60654579 | None:intergenic | 50.0% | |
| GGAAAATGCGGCCACAATTG+CGG | + | chr2.3:60653574-60653593 | None:intergenic | 50.0% | |
| GGGGTGACCTAAATCTTGGA+TGG | - | chr2.3:60655230-60655249 | MS.gene74608:intron | 50.0% | |
| GTCAGTCCGTCCAATTGGTA+AGG | + | chr2.3:60653788-60653807 | None:intergenic | 50.0% | |
| GTGAGTGCTTCCTTGTCTAG+AGG | - | chr2.3:60654163-60654182 | MS.gene74608:intron | 50.0% | |
| TGCAAGATGTTCCCTAGCTG+AGG | + | chr2.3:60655977-60655996 | None:intergenic | 50.0% | |
| TGGAGCTCCTTTGTCTGAAC+AGG | - | chr2.3:60655846-60655865 | MS.gene74608:intron | 50.0% | |
| ! | GAGTTGACTCATACCCTGCA+AGG | + | chr2.3:60653766-60653785 | None:intergenic | 50.0% |
| ! | GCAGCAAGGTGCTAGAACTA+TGG | + | chr2.3:60655330-60655349 | None:intergenic | 50.0% |
| ! | GCTCTAAGCCATGCCTTCTA+AGG | - | chr2.3:60655147-60655166 | MS.gene74608:intron | 50.0% |
| ! | TGTGGACAAGAAGGAAGCAC+TGG | - | chr2.3:60654567-60654586 | MS.gene74608:intron | 50.0% |
| !! | ACCAATCAGGGGCATCTAAC+TGG | + | chr2.3:60654996-60655015 | None:intergenic | 50.0% |
| !! | GAAGGAAGCACTGGAGAACT+TGG | - | chr2.3:60654576-60654595 | MS.gene74608:intron | 50.0% |
| !! | TCAAGCATTGGCCTCAGCTA+GGG | - | chr2.3:60655963-60655982 | MS.gene74608:intron | 50.0% |
| ACTCATACCCTGCAAGGCGT+AGG | + | chr2.3:60653760-60653779 | None:intergenic | 55.0% | |
| AGCTGAACCTACGCCTTGCA+GGG | - | chr2.3:60653750-60653769 | MS.gene74608:intron | 55.0% | |
| CTCACCTTCAGTGCGAGCAT+TGG | + | chr2.3:60654148-60654167 | None:intergenic | 55.0% | |
| CTTGTCCACATTGCCTCTGG+AGG | + | chr2.3:60654557-60654576 | None:intergenic | 55.0% | |
| GCCAGTTAGATGCCCCTGAT+TGG | - | chr2.3:60654992-60655011 | MS.gene74608:intron | 55.0% | |
| ! | ATTCAGTTGGCCTCCTGCTC+AGG | - | chr2.3:60654418-60654437 | MS.gene74608:intron | 55.0% |
| !! | GTCAAGCATTGGCCTCAGCT+AGG | - | chr2.3:60655962-60655981 | MS.gene74608:intron | 55.0% |
| GAGCTGAACCTACGCCTTGC+AGG | - | chr2.3:60653749-60653768 | MS.gene74608:intron | 60.0% | |
| GGATTCTGACGGGAGACGTG+TGG | - | chr2.3:60654038-60654057 | MS.gene74608:intron | 60.0% | |
| CAGCTCCCGCTGCCCACATT+AGG | + | chr2.3:60653735-60653754 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 60653436 | 60656014 | 60653436 | ID=MS.gene74608 |
| chr2.3 | mRNA | 60653436 | 60656014 | 60653436 | ID=MS.gene74608.t1;Parent=MS.gene74608 |
| chr2.3 | exon | 60656006 | 60656014 | 60656006 | ID=MS.gene74608.t1.exon1;Parent=MS.gene74608.t1 |
| chr2.3 | CDS | 60656006 | 60656014 | 60656006 | ID=cds.MS.gene74608.t1;Parent=MS.gene74608.t1 |
| chr2.3 | exon | 60655288 | 60655447 | 60655288 | ID=MS.gene74608.t1.exon2;Parent=MS.gene74608.t1 |
| chr2.3 | CDS | 60655288 | 60655447 | 60655288 | ID=cds.MS.gene74608.t1;Parent=MS.gene74608.t1 |
| chr2.3 | exon | 60655011 | 60655158 | 60655011 | ID=MS.gene74608.t1.exon3;Parent=MS.gene74608.t1 |
| chr2.3 | CDS | 60655011 | 60655158 | 60655011 | ID=cds.MS.gene74608.t1;Parent=MS.gene74608.t1 |
| chr2.3 | exon | 60654812 | 60654889 | 60654812 | ID=MS.gene74608.t1.exon4;Parent=MS.gene74608.t1 |
| chr2.3 | CDS | 60654812 | 60654889 | 60654812 | ID=cds.MS.gene74608.t1;Parent=MS.gene74608.t1 |
| chr2.3 | exon | 60653583 | 60653667 | 60653583 | ID=MS.gene74608.t1.exon5;Parent=MS.gene74608.t1 |
| chr2.3 | CDS | 60653583 | 60653667 | 60653583 | ID=cds.MS.gene74608.t1;Parent=MS.gene74608.t1 |
| chr2.3 | exon | 60653436 | 60653495 | 60653436 | ID=MS.gene74608.t1.exon6;Parent=MS.gene74608.t1 |
| chr2.3 | CDS | 60653436 | 60653495 | 60653436 | ID=cds.MS.gene74608.t1;Parent=MS.gene74608.t1 |
| Gene Sequence |
| Protein sequence |
