Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02789.t1 | CAI29267.1 | 97.2 | 177 | 5 | 0 | 1 | 177 | 6 | 182 | 2.80E-87 | 331.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02789.t1 | Q940S5 | 75.7 | 177 | 43 | 0 | 1 | 177 | 1 | 177 | 1.7e-69 | 263.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02789.t1 | G7IFU6 | 97.2 | 177 | 5 | 0 | 1 | 177 | 29 | 205 | 2.0e-87 | 331.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02789 | MS.gene45686 | PPI |
| MS.gene02789 | MS.gene38302 | PPI |
| MS.gene02789 | MS.gene68223 | PPI |
| MS.gene053143 | MS.gene02789 | PPI |
| MS.gene02789 | MS.gene029335 | PPI |
| MS.gene065068 | MS.gene02789 | PPI |
| MS.gene07800 | MS.gene02789 | PPI |
| MS.gene034150 | MS.gene02789 | PPI |
| MS.gene021666 | MS.gene02789 | PPI |
| MS.gene76242 | MS.gene02789 | PPI |
| MS.gene79635 | MS.gene02789 | PPI |
| MS.gene74984 | MS.gene02789 | PPI |
| MS.gene063166 | MS.gene02789 | PPI |
| MS.gene011220 | MS.gene02789 | PPI |
| MS.gene003764 | MS.gene02789 | PPI |
| MS.gene029334 | MS.gene02789 | PPI |
| MS.gene74768 | MS.gene02789 | PPI |
| MS.gene02789 | MS.gene37394 | PPI |
| MS.gene064893 | MS.gene02789 | PPI |
| MS.gene30333 | MS.gene02789 | PPI |
| MS.gene02789 | MS.gene50077 | PPI |
| MS.gene065067 | MS.gene02789 | PPI |
| MS.gene054585 | MS.gene02789 | PPI |
| MS.gene02789 | MS.gene74983 | PPI |
| MS.gene02789 | MS.gene63417 | PPI |
| MS.gene76243 | MS.gene02789 | PPI |
| MS.gene014282 | MS.gene02789 | PPI |
| MS.gene02789 | MS.gene056700 | PPI |
| MS.gene043279 | MS.gene02789 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02789.t1 | MTR_2g028750 | 97.175 | 177 | 5 | 0 | 1 | 177 | 29 | 205 | 5.70e-126 | 352 |
| MS.gene02789.t1 | MTR_8g017630 | 75.287 | 174 | 43 | 0 | 3 | 176 | 6 | 179 | 1.18e-92 | 267 |
| MS.gene02789.t1 | MTR_0350s0010 | 71.930 | 171 | 47 | 1 | 7 | 176 | 49 | 219 | 7.66e-85 | 249 |
| MS.gene02789.t1 | MTR_7g009640 | 75.781 | 128 | 31 | 0 | 7 | 134 | 2 | 129 | 1.48e-71 | 213 |
| MS.gene02789.t1 | MTR_8g018030 | 66.667 | 60 | 20 | 0 | 3 | 62 | 7 | 66 | 6.34e-24 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02789.t1 | AT1G60970 | 75.706 | 177 | 43 | 0 | 1 | 177 | 1 | 177 | 1.85e-97 | 280 |
| MS.gene02789.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 7 | 178 | 6.44e-92 | 265 |
| MS.gene02789.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 7 | 178 | 6.44e-92 | 265 |
| MS.gene02789.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 7 | 178 | 6.44e-92 | 265 |
| MS.gene02789.t1 | AT4G08520 | 71.512 | 172 | 49 | 0 | 5 | 176 | 9 | 180 | 1.45e-90 | 262 |
| MS.gene02789.t1 | AT3G09800 | 71.512 | 172 | 49 | 0 | 5 | 176 | 87 | 258 | 1.80e-90 | 265 |
| MS.gene02789.t1 | AT3G09800 | 70.492 | 122 | 36 | 0 | 55 | 176 | 18 | 139 | 1.75e-60 | 184 |
| MS.gene02789.t1 | AT3G09800 | 70.492 | 122 | 36 | 0 | 55 | 176 | 18 | 139 | 1.75e-60 | 184 |
Find 36 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGCCCAGCTATAGTATT+TGG | 0.194644 | 2.4:-60719090 | None:intergenic |
| TGTGAAGAACATCCTTCTTT+TGG | 0.230451 | 2.4:+60717309 | MS.gene02789:CDS |
| GATCTTCACTTCTTTGTTAC+TGG | 0.233863 | 2.4:+60717633 | MS.gene02789:CDS |
| AAAAGCTTCCTTTGCACTAT+TGG | 0.246999 | 2.4:-60717383 | None:intergenic |
| GGAAGTAATAGTACAGATTC+TGG | 0.313738 | 2.4:+60719114 | MS.gene02789:CDS |
| ATTCAGTTGGCCTCCTGCTC+AGG | 0.331455 | 2.4:+60717709 | MS.gene02789:CDS |
| TGGAGCTCCTTTGTCTGAAC+AGG | 0.379095 | 2.4:+60719134 | MS.gene02789:CDS |
| TTCATGTAGTTCATTTAAGA+AGG | 0.405897 | 2.4:-60719290 | None:intergenic |
| ACTACTCCAAATACTATAGC+TGG | 0.418260 | 2.4:+60719084 | MS.gene02789:CDS |
| GAAGGAAGCACTGGAGAACT+TGG | 0.432743 | 2.4:+60717865 | MS.gene02789:CDS |
| ATCGATGAAATTATTGATGC+AGG | 0.435159 | 2.4:+60717905 | MS.gene02789:CDS |
| CTAAGTATTTCACAGATGAT+TGG | 0.437609 | 2.4:+60717356 | MS.gene02789:CDS |
| TAACAAAGAAGTGAAGATCT+TGG | 0.449077 | 2.4:-60717629 | None:intergenic |
| ATCTTCACTTCTTTGTTACT+GGG | 0.467745 | 2.4:+60717634 | MS.gene02789:CDS |
| TATCTTATCCTCAGTTCTGC+AGG | 0.484498 | 2.4:+60717677 | MS.gene02789:CDS |
| GCTTCCTTTGCACTATTGGT+TGG | 0.497397 | 2.4:-60717379 | None:intergenic |
| TATCAGAAAACAACCTGAGC+AGG | 0.503709 | 2.4:-60717722 | None:intergenic |
| GTCAAGCATTGGCCTCAGCT+AGG | 0.506234 | 2.4:+60719250 | MS.gene02789:CDS |
| AGAAGGATGTTCTTCACAGA+AGG | 0.510757 | 2.4:-60717304 | None:intergenic |
| GCAGACACTAAGTCAAGCAT+TGG | 0.516098 | 2.4:+60719239 | MS.gene02789:intron |
| TCAAGCATTGGCCTCAGCTA+GGG | 0.518417 | 2.4:+60719251 | MS.gene02789:CDS |
| CTCACCTTCAGTGCGAGCAT+TGG | 0.533277 | 2.4:-60717437 | None:intergenic |
| TCCCATCAGAATCCAAAAGA+AGG | 0.535691 | 2.4:-60717321 | None:intergenic |
| CAGAGGCAATGTGGACAAGA+AGG | 0.539823 | 2.4:+60717847 | MS.gene02789:intron |
| TGTGGACAAGAAGGAAGCAC+TGG | 0.543071 | 2.4:+60717856 | MS.gene02789:CDS |
| AATACTATAGCTGGGCAAGT+TGG | 0.543905 | 2.4:+60719093 | MS.gene02789:CDS |
| AAGACCAATGCTCGCACTGA+AGG | 0.548318 | 2.4:+60717433 | MS.gene02789:CDS |
| TCATGTAGTTCATTTAAGAA+GGG | 0.561156 | 2.4:-60719289 | None:intergenic |
| CTACTCCAAATACTATAGCT+GGG | 0.578798 | 2.4:+60719085 | MS.gene02789:CDS |
| TCGATGAAATTATTGATGCA+GGG | 0.579583 | 2.4:+60717906 | MS.gene02789:CDS |
| GAAGGATGTTCTTCACAGAA+GGG | 0.583930 | 2.4:-60717303 | None:intergenic |
| CAACATACCTGTTCAGACAA+AGG | 0.612109 | 2.4:-60719141 | None:intergenic |
| TGCAAGATGTTCCCTAGCTG+AGG | 0.615227 | 2.4:-60719262 | None:intergenic |
| CAGAAAACAACCTGAGCAGG+AGG | 0.629118 | 2.4:-60717719 | None:intergenic |
| TTGGCCAACCAATAGTGCAA+AGG | 0.655463 | 2.4:+60717375 | MS.gene02789:CDS |
| GGATTCTGATGGGAGACGTG+TGG | 0.674441 | 2.4:+60717330 | MS.gene02789:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAAACTCACTTATTT+GGG | + | chr2.4:60719194-60719213 | MS.gene02789:intron | 15.0% |
| !! | TTAAATTAAACTCACTTATT+TGG | + | chr2.4:60719193-60719212 | MS.gene02789:intron | 15.0% |
| !!! | AAATTTTTTTATGCTATCAA+AGG | - | chr2.4:60719175-60719194 | None:intergenic | 15.0% |
| !!! | AATTTTTTTATGCTATCAAA+GGG | - | chr2.4:60719174-60719193 | None:intergenic | 15.0% |
| !! | AAATCATTAGAAAGAAAATC+TGG | + | chr2.4:60718155-60718174 | MS.gene02789:intron | 20.0% |
| !! | AATCATTAGAAAGAAAATCT+GGG | + | chr2.4:60718156-60718175 | MS.gene02789:intron | 20.0% |
| !! | CAAAAATAAAATGATAATCG+TGG | - | chr2.4:60716524-60716543 | None:intergenic | 20.0% |
| !! | CCATTATTATAACAGTTTAA+AGG | + | chr2.4:60716899-60716918 | MS.gene02789:intron | 20.0% |
| !! | CCTTTAAACTGTTATAATAA+TGG | - | chr2.4:60716902-60716921 | None:intergenic | 20.0% |
| !! | TATAATTATGGAAATCACAA+TGG | - | chr2.4:60718644-60718663 | None:intergenic | 20.0% |
| !!! | AATAATGGTTCTAAAAATGT+GGG | - | chr2.4:60716887-60716906 | None:intergenic | 20.0% |
| !!! | ATCTTTTCATTTAATAGCTA+TGG | - | chr2.4:60718337-60718356 | None:intergenic | 20.0% |
| !!! | TAATAATGGTTCTAAAAATG+TGG | - | chr2.4:60716888-60716907 | None:intergenic | 20.0% |
| !!! | TTAGTAATAGCTCTAAATTA+TGG | + | chr2.4:60716779-60716798 | MS.gene02789:intron | 20.0% |
| !!! | TTTATTTTGTGAGAAGAATT+TGG | + | chr2.4:60717483-60717502 | MS.gene02789:intron | 20.0% |
| !!! | TTTTTGTGTGATTTTGATTT+TGG | + | chr2.4:60716629-60716648 | MS.gene02789:intron | 20.0% |
| ! | ACCTAAAAAAACGCATATTA+CGG | - | chr2.4:60716824-60716843 | None:intergenic | 25.0% |
| ! | AGAACCTAACAAACAAATAA+TGG | - | chr2.4:60717975-60717994 | None:intergenic | 25.0% |
| ! | ATAAAAAATACCTCTAGACA+AGG | - | chr2.4:60717468-60717487 | None:intergenic | 25.0% |
| ! | ATATGTATCCATCAAATCAA+AGG | - | chr2.4:60718883-60718902 | None:intergenic | 25.0% |
| ! | ATCAAAGGAAATGAATAAGA+AGG | - | chr2.4:60718868-60718887 | None:intergenic | 25.0% |
| ! | ATCTATAAGTATCTCTGTAT+AGG | - | chr2.4:60716988-60717007 | None:intergenic | 25.0% |
| ! | CAACAAGAAACATAAAATGT+TGG | - | chr2.4:60716721-60716740 | None:intergenic | 25.0% |
| ! | CTTTCAAGAAGAGTTTATAA+AGG | - | chr2.4:60718780-60718799 | None:intergenic | 25.0% |
| ! | GAATAATACTGCACAAAATA+TGG | - | chr2.4:60719059-60719078 | None:intergenic | 25.0% |
| ! | TATCTATGTGTGATATTCAA+AGG | + | chr2.4:60717755-60717774 | MS.gene02789:intron | 25.0% |
| ! | TCTTCCATTATTTGTTTGTT+AGG | + | chr2.4:60717968-60717987 | MS.gene02789:intron | 25.0% |
| ! | TGCTAAAATTCAAATACAGT+GGG | - | chr2.4:60718670-60718689 | None:intergenic | 25.0% |
| ! | TTGCTAAAATTCAAATACAG+TGG | - | chr2.4:60718671-60718690 | None:intergenic | 25.0% |
| !! | ATTCAAATCTACACTGATTA+AGG | - | chr2.4:60718185-60718204 | None:intergenic | 25.0% |
| !! | CAACATTTTATGTTTCTTGT+TGG | + | chr2.4:60716719-60716738 | MS.gene02789:intron | 25.0% |
| !! | CTTTTAACAAGGGTTTTTAA+GGG | - | chr2.4:60718750-60718769 | None:intergenic | 25.0% |
| !! | TCTTTTAACAAGGGTTTTTA+AGG | - | chr2.4:60718751-60718770 | None:intergenic | 25.0% |
| !! | TGATTTGATGGATACATATA+GGG | + | chr2.4:60718884-60718903 | MS.gene02789:intron | 25.0% |
| !! | TTAGATCAAAACGATAGTTT+TGG | + | chr2.4:60718362-60718381 | MS.gene02789:intron | 25.0% |
| !! | TTGATTTGATGGATACATAT+AGG | + | chr2.4:60718883-60718902 | MS.gene02789:intron | 25.0% |
| !! | TTGTATTGTGTGTTATTGTT+AGG | + | chr2.4:60717273-60717292 | MS.gene02789:intron | 25.0% |
| !!! | ATTCATTTCCTTTGATTTGA+TGG | + | chr2.4:60718872-60718891 | MS.gene02789:intron | 25.0% |
| AAGAAGGAAGTTGAGAAAAA+AGG | - | chr2.4:60718852-60718871 | None:intergenic | 30.0% | |
| AATGTTGGATCAAACGAAAA+AGG | - | chr2.4:60716706-60716725 | None:intergenic | 30.0% | |
| AATTGTGATAGAGAGGAATT+GGG | - | chr2.4:60718910-60718929 | None:intergenic | 30.0% | |
| ACAACAAAAAAGAAACCAAG+AGG | - | chr2.4:60718576-60718595 | None:intergenic | 30.0% | |
| ACCAAGAGGAAATAGAATTA+AGG | - | chr2.4:60718562-60718581 | None:intergenic | 30.0% | |
| AGAAACCAGTAATATTGTCA+AGG | - | chr2.4:60717813-60717832 | None:intergenic | 30.0% | |
| AGAAGAGTTTATAAAGGTGA+AGG | - | chr2.4:60718774-60718793 | None:intergenic | 30.0% | |
| AGATGAATATTTAGTGAGAC+TGG | - | chr2.4:60719034-60719053 | None:intergenic | 30.0% | |
| ATAAAAACAAAAGTCGCACA+AGG | + | chr2.4:60718115-60718134 | MS.gene02789:intron | 30.0% | |
| ATAAACTCCATCCAAGATTT+AGG | - | chr2.4:60718527-60718546 | None:intergenic | 30.0% | |
| ATCGATGAAATTATTGATGC+AGG | + | chr2.4:60717905-60717924 | MS.gene02789:CDS | 30.0% | |
| ATCTTCACTTCTTTGTTACT+GGG | + | chr2.4:60717634-60717653 | MS.gene02789:CDS | 30.0% | |
| ATGAATATTTAGTGAGACTG+GGG | - | chr2.4:60719032-60719051 | None:intergenic | 30.0% | |
| CAAAGAAGAGAGAAATATGA+AGG | - | chr2.4:60718977-60718996 | None:intergenic | 30.0% | |
| CTAAGTATTTCACAGATGAT+TGG | + | chr2.4:60717356-60717375 | MS.gene02789:CDS | 30.0% | |
| GAAAAAATTAGTGAAACCTC+AGG | - | chr2.4:60718220-60718239 | None:intergenic | 30.0% | |
| GAAATATGAAGGTGAAAATG+AGG | - | chr2.4:60718966-60718985 | None:intergenic | 30.0% | |
| GATGAATATTTAGTGAGACT+GGG | - | chr2.4:60719033-60719052 | None:intergenic | 30.0% | |
| TAAAAACAACCCATCAAAGT+AGG | - | chr2.4:60717554-60717573 | None:intergenic | 30.0% | |
| TAACAAAGAAGTGAAGATCT+TGG | - | chr2.4:60717632-60717651 | None:intergenic | 30.0% | |
| TACAGTGGGACTTATAATTA+TGG | - | chr2.4:60718656-60718675 | None:intergenic | 30.0% | |
| TCCTTAATTCTATTTCCTCT+TGG | + | chr2.4:60718558-60718577 | MS.gene02789:intron | 30.0% | |
| TCGATGAAATTATTGATGCA+GGG | + | chr2.4:60717906-60717925 | MS.gene02789:CDS | 30.0% | |
| TCTAAAAATGTGGGAAAATG+CGG | - | chr2.4:60716878-60716897 | None:intergenic | 30.0% | |
| TGAAAATGAGGTAAAAACCT+AGG | - | chr2.4:60718954-60718973 | None:intergenic | 30.0% | |
| TGCTAAAAATTGAGTGAAGT+TGG | + | chr2.4:60717181-60717200 | MS.gene02789:intron | 30.0% | |
| TGTATATGACCTACTTTGAT+GGG | + | chr2.4:60717542-60717561 | MS.gene02789:intron | 30.0% | |
| TTGTATATGACCTACTTTGA+TGG | + | chr2.4:60717541-60717560 | MS.gene02789:intron | 30.0% | |
| ! | CTCTTTGGAAGTTTGAATAA+TGG | + | chr2.4:60718410-60718429 | MS.gene02789:intron | 30.0% |
| ! | TGAAGATAAGAGATTTTGTG+AGG | + | chr2.4:60717227-60717246 | MS.gene02789:intron | 30.0% |
| ! | TGCTCCTTATTTATTTGTCT+CGG | + | chr2.4:60719001-60719020 | MS.gene02789:intron | 30.0% |
| ! | TTTTTATGCTATCAAAGGGA+AGG | - | chr2.4:60719170-60719189 | None:intergenic | 30.0% |
| !!! | CTTGGTTTCTTTTTTGTTGT+GGG | + | chr2.4:60718576-60718595 | MS.gene02789:intron | 30.0% |
| !!! | GTTTTAGAACCATTAGTTTG+TGG | + | chr2.4:60717113-60717132 | MS.gene02789:intron | 30.0% |
| !!! | TCTTGGTTTCTTTTTTGTTG+TGG | + | chr2.4:60718575-60718594 | MS.gene02789:intron | 30.0% |
| !!! | TTGATGGGTTGTTTTTATGT+GGG | + | chr2.4:60717557-60717576 | MS.gene02789:intron | 30.0% |
| !!! | TTTGATGGGTTGTTTTTATG+TGG | + | chr2.4:60717556-60717575 | MS.gene02789:intron | 30.0% |
| AAAAGCTTCCTTTGCACTAT+TGG | - | chr2.4:60717386-60717405 | None:intergenic | 35.0% | |
| ACCATGACTTAACCTTAGAA+GGG | + | chr2.4:60718497-60718516 | MS.gene02789:intron | 35.0% | |
| ACTACTCCAAATACTATAGC+TGG | + | chr2.4:60719084-60719103 | MS.gene02789:CDS | 35.0% | |
| ATGGCAAATAATGAGATCAC+TGG | - | chr2.4:60718318-60718337 | None:intergenic | 35.0% | |
| CAATTGTGATAGAGAGGAAT+TGG | - | chr2.4:60718911-60718930 | None:intergenic | 35.0% | |
| CAGTAACAATTGTGATAGAG+AGG | - | chr2.4:60718917-60718936 | None:intergenic | 35.0% | |
| CTACTCCAAATACTATAGCT+GGG | + | chr2.4:60719085-60719104 | MS.gene02789:CDS | 35.0% | |
| GAAGTCCTTGACAATATTAC+TGG | + | chr2.4:60717805-60717824 | MS.gene02789:intron | 35.0% | |
| GATCTTCACTTCTTTGTTAC+TGG | + | chr2.4:60717633-60717652 | MS.gene02789:CDS | 35.0% | |
| GGAAGTAATAGTACAGATTC+TGG | + | chr2.4:60719114-60719133 | MS.gene02789:CDS | 35.0% | |
| TCCAAACTCTAAACCAATCA+GGG | - | chr2.4:60718295-60718314 | None:intergenic | 35.0% | |
| TCTTCCAAAATTCAACTCGT+AGG | + | chr2.4:60718020-60718039 | MS.gene02789:intron | 35.0% | |
| TGTTTGAACGTTTATCTCTG+AGG | - | chr2.4:60718815-60718834 | None:intergenic | 35.0% | |
| TTATGGAAATCACAATGGAG+CGG | - | chr2.4:60718639-60718658 | None:intergenic | 35.0% | |
| ! | AAGGTGAAGGTCTTTTAACA+AGG | - | chr2.4:60718761-60718780 | None:intergenic | 35.0% |
| ! | AGGTGAAGGTCTTTTAACAA+GGG | - | chr2.4:60718760-60718779 | None:intergenic | 35.0% |
| ! | ATCCTTCTTTTGGATTCTGA+TGG | + | chr2.4:60717319-60717338 | MS.gene02789:CDS | 35.0% |
| ! | ATGCAGCAGTATTTAGCTTA+GGG | + | chr2.4:60716666-60716685 | MS.gene02789:intron | 35.0% |
| ! | ATGTCTTTTCTGGACAAATG+CGG | - | chr2.4:60718705-60718724 | None:intergenic | 35.0% |
| ! | TCCTTCTTTTGGATTCTGAT+GGG | + | chr2.4:60717320-60717339 | MS.gene02789:CDS | 35.0% |
| ! | TCTTTTTGTTGAACCTTGCT+TGG | + | chr2.4:60717153-60717172 | MS.gene02789:intron | 35.0% |
| ! | TGTGAAGAACATCCTTCTTT+TGG | + | chr2.4:60717309-60717328 | MS.gene02789:CDS | 35.0% |
| ! | TTTTAGCACAAAACCAAGCA+AGG | - | chr2.4:60717169-60717188 | None:intergenic | 35.0% |
| !! | AACCATTAGTTTGTGGAAGT+TGG | + | chr2.4:60717120-60717139 | MS.gene02789:intron | 35.0% |
| !! | ACCATTAGTTTGTGGAAGTT+GGG | + | chr2.4:60717121-60717140 | MS.gene02789:intron | 35.0% |
| !! | CGAGTTGAATTTTGGAAGAA+AGG | - | chr2.4:60718019-60718038 | None:intergenic | 35.0% |
| !! | GATTTTGTGAGGTGTTTTTG+AGG | + | chr2.4:60717238-60717257 | MS.gene02789:intron | 35.0% |
| !!! | ATAGTTTTGGATGAAGCACA+AGG | + | chr2.4:60718375-60718394 | MS.gene02789:intron | 35.0% |
| !!! | CAGGCATTTTTTGATTCAGT+TGG | + | chr2.4:60717696-60717715 | MS.gene02789:CDS | 35.0% |
| !!! | GCCGTAATATGCGTTTTTTT+AGG | + | chr2.4:60716820-60716839 | MS.gene02789:intron | 35.0% |
| AAAAAATGCCTGCAGAACTG+AGG | - | chr2.4:60717688-60717707 | None:intergenic | 40.0% | |
| AAAACAAAAGTCGCACAAGG+CGG | + | chr2.4:60718118-60718137 | MS.gene02789:intron | 40.0% | |
| AATACTATAGCTGGGCAAGT+TGG | + | chr2.4:60719093-60719112 | MS.gene02789:CDS | 40.0% | |
| ACTTGCCCAGCTATAGTATT+TGG | - | chr2.4:60719093-60719112 | None:intergenic | 40.0% | |
| AGAAAGTTTAGCCGAGTTCA+AGG | + | chr2.4:60716953-60716972 | MS.gene02789:intron | 40.0% | |
| AGAAGGATGTTCTTCACAGA+AGG | - | chr2.4:60717307-60717326 | None:intergenic | 40.0% | |
| AGGGCCGAGACAAATAAATA+AGG | - | chr2.4:60719008-60719027 | None:intergenic | 40.0% | |
| ATATTTAGTGAGACTGGGGA+AGG | - | chr2.4:60719028-60719047 | None:intergenic | 40.0% | |
| ATGGTCCTCAATTGCAATTG+TGG | + | chr2.4:60716798-60716817 | MS.gene02789:intron | 40.0% | |
| CAACATACCTGTTCAGACAA+AGG | - | chr2.4:60719144-60719163 | None:intergenic | 40.0% | |
| CCAAACTCTAAACCAATCAG+GGG | - | chr2.4:60718294-60718313 | None:intergenic | 40.0% | |
| CCATGACTTAACCTTAGAAG+GGG | + | chr2.4:60718498-60718517 | MS.gene02789:intron | 40.0% | |
| GAAGGATGTTCTTCACAGAA+GGG | - | chr2.4:60717306-60717325 | None:intergenic | 40.0% | |
| GACCATGACTTAACCTTAGA+AGG | + | chr2.4:60718496-60718515 | MS.gene02789:intron | 40.0% | |
| GACCATGACTTAACCTTAGA+AGG | - | chr2.4:60718515-60718496 | None:intergenic | 40.0% | |
| GACTTAGTGTCTGCAAAAGA+AGG | - | chr2.4:60719233-60719252 | None:intergenic | 40.0% | |
| GATGAAGCACAAGGTTACAT+GGG | + | chr2.4:60718384-60718403 | MS.gene02789:intron | 40.0% | |
| GGAAGTTGAGAAAAAAGGCT+TGG | - | chr2.4:60718847-60718866 | None:intergenic | 40.0% | |
| GTCCAAACTCTAAACCAATC+AGG | - | chr2.4:60718296-60718315 | None:intergenic | 40.0% | |
| GTGTTATCAATCTGTCACCA+TGG | + | chr2.4:60717777-60717796 | MS.gene02789:intron | 40.0% | |
| GTTGGATCAAACGAAAAAGG+AGG | - | chr2.4:60716703-60716722 | None:intergenic | 40.0% | |
| TATCAGAAAACAACCTGAGC+AGG | - | chr2.4:60717725-60717744 | None:intergenic | 40.0% | |
| TATCTTATCCTCAGTTCTGC+AGG | + | chr2.4:60717677-60717696 | MS.gene02789:CDS | 40.0% | |
| TATTTAGTGAGACTGGGGAA+GGG | - | chr2.4:60719027-60719046 | None:intergenic | 40.0% | |
| TCAATCTGTCACCATGGAAT+TGG | + | chr2.4:60717783-60717802 | MS.gene02789:intron | 40.0% | |
| TCCCATCAGAATCCAAAAGA+AGG | - | chr2.4:60717324-60717343 | None:intergenic | 40.0% | |
| TGACTTAACCTTAGAAGGCA+TGG | - | chr2.4:60718445-60718464 | None:intergenic | 40.0% | |
| TGAGTCAACTCCTTACCAAT+TGG | + | chr2.4:60717067-60717086 | MS.gene02789:intron | 40.0% | |
| ! | ATTGCCTCTGGAGGAAAAAA+TGG | - | chr2.4:60717837-60717856 | None:intergenic | 40.0% |
| ! | CATGCAGCAGTATTTAGCTT+AGG | + | chr2.4:60716665-60716684 | MS.gene02789:intron | 40.0% |
| ! | TCAGAGGGAAATGTCTTTTC+TGG | - | chr2.4:60718715-60718734 | None:intergenic | 40.0% |
| ! | TTGCCTCTGGAGGAAAAAAT+GGG | - | chr2.4:60717836-60717855 | None:intergenic | 40.0% |
| ! | TTTTCTGGACAAATGCGGTT+TGG | - | chr2.4:60718700-60718719 | None:intergenic | 40.0% |
| !! | ACAAGGGTTTTTAAGGGTGA+AGG | - | chr2.4:60718744-60718763 | None:intergenic | 40.0% |
| !! | AGCTCCTACGAGTTGAATTT+TGG | - | chr2.4:60718027-60718046 | None:intergenic | 40.0% |
| !! | CCATTAGTTTGTGGAAGTTG+GGG | + | chr2.4:60717122-60717141 | MS.gene02789:intron | 40.0% |
| !! | TGCCTTCTAAGGTTAAGTCA+TGG | + | chr2.4:60718445-60718464 | MS.gene02789:intron | 40.0% |
| AGAAGGGGTGACCTAAATCT+TGG | + | chr2.4:60718513-60718532 | MS.gene02789:intron | 45.0% | |
| AGGGTGAAGGATAAGATCAG+AGG | - | chr2.4:60718731-60718750 | None:intergenic | 45.0% | |
| AGGTTACATGGGTGTCTCTT+TGG | + | chr2.4:60718395-60718414 | MS.gene02789:intron | 45.0% | |
| CACATTAGGACTTCGTTGGT+GGG | - | chr2.4:60717013-60717032 | None:intergenic | 45.0% | |
| CACCAACGAAGTCCTAATGT+GGG | + | chr2.4:60717012-60717031 | MS.gene02789:intron | 45.0% | |
| CCCCAACTTCCACAAACTAA+TGG | - | chr2.4:60717125-60717144 | None:intergenic | 45.0% | |
| CTGAAGTCAGTCAGTCCAAT+TGG | - | chr2.4:60717085-60717104 | None:intergenic | 45.0% | |
| CTGCGAGTCTTTCATTTCCT+AGG | + | chr2.4:60718934-60718953 | MS.gene02789:intron | 45.0% | |
| GAATACCTGATACGTACCTG+AGG | + | chr2.4:60718201-60718220 | MS.gene02789:intron | 45.0% | |
| GATTTAGGTCACCCCTTCTA+AGG | - | chr2.4:60718512-60718531 | None:intergenic | 45.0% | |
| GCAGACACTAAGTCAAGCAT+TGG | + | chr2.4:60719239-60719258 | MS.gene02789:intron | 45.0% | |
| GCAGGGTATGTCATTCTCAT+AGG | + | chr2.4:60717923-60717942 | MS.gene02789:intron | 45.0% | |
| GCTTCCTTTGCACTATTGGT+TGG | - | chr2.4:60717382-60717401 | None:intergenic | 45.0% | |
| GGATGAAGCACAAGGTTACA+TGG | + | chr2.4:60718383-60718402 | MS.gene02789:intron | 45.0% | |
| GGCTCTATAAGCCTTGAACT+CGG | - | chr2.4:60716967-60716986 | None:intergenic | 45.0% | |
| GGGTGAAGGATAAGATCAGA+GGG | - | chr2.4:60718730-60718749 | None:intergenic | 45.0% | |
| GTCAAGGACTTCCAATTCCA+TGG | - | chr2.4:60717797-60717816 | None:intergenic | 45.0% | |
| GTCAGTCAGTCCAATTGGTA+AGG | - | chr2.4:60717080-60717099 | None:intergenic | 45.0% | |
| GTGCTAGAACTATGGATGTG+CGG | - | chr2.4:60718612-60718631 | None:intergenic | 45.0% | |
| TACGGCCACAATTGCAATTG+AGG | - | chr2.4:60716806-60716825 | None:intergenic | 45.0% | |
| TGAAACCTCAGGTACGTATC+AGG | - | chr2.4:60718209-60718228 | None:intergenic | 45.0% | |
| TTGGCCAACCAATAGTGCAA+AGG | + | chr2.4:60717375-60717394 | MS.gene02789:CDS | 45.0% | |
| ! | TTTTTCCTCCAGAGGCAATG+TGG | + | chr2.4:60717838-60717857 | MS.gene02789:intron | 45.0% |
| !! | CCCCTGATTGGTTTAGAGTT+TGG | + | chr2.4:60718291-60718310 | MS.gene02789:intron | 45.0% |
| !! | CCCCTTCTAAGGTTAAGTCA+TGG | - | chr2.4:60718501-60718520 | None:intergenic | 45.0% |
| !!! | GGTTGTTTTTATGTGGGCAG+CGG | + | chr2.4:60717563-60717582 | MS.gene02789:intron | 45.0% |
| !!! | TCTCCCATTTTTTCCTCCAG+AGG | + | chr2.4:60717830-60717849 | MS.gene02789:intron | 45.0% |
| AAGACCAATGCTCGCACTGA+AGG | + | chr2.4:60717433-60717452 | MS.gene02789:CDS | 50.0% | |
| CAGAAAACAACCTGAGCAGG+AGG | - | chr2.4:60717722-60717741 | None:intergenic | 50.0% | |
| CAGAGGCAATGTGGACAAGA+AGG | + | chr2.4:60717847-60717866 | MS.gene02789:intron | 50.0% | |
| CCACATTAGGACTTCGTTGG+TGG | - | chr2.4:60717014-60717033 | None:intergenic | 50.0% | |
| CCACCAACGAAGTCCTAATG+TGG | + | chr2.4:60717011-60717030 | MS.gene02789:intron | 50.0% | |
| CGACATTGCAACCGCAATTG+TGG | + | chr2.4:60716852-60716871 | MS.gene02789:intron | 50.0% | |
| CTTCTTGTCCACATTGCCTC+TGG | - | chr2.4:60717849-60717868 | None:intergenic | 50.0% | |
| GAAATCACAATGGAGCGGCA+AGG | - | chr2.4:60718634-60718653 | None:intergenic | 50.0% | |
| GGAAAATGCGGCCACAATTG+CGG | - | chr2.4:60716866-60716885 | None:intergenic | 50.0% | |
| GGGGTGACCTAAATCTTGGA+TGG | + | chr2.4:60718517-60718536 | MS.gene02789:intron | 50.0% | |
| GTGAGTGCTTCCTTGTCTAG+AGG | + | chr2.4:60717455-60717474 | MS.gene02789:intron | 50.0% | |
| TGCAAGATGTTCCCTAGCTG+AGG | - | chr2.4:60719265-60719284 | None:intergenic | 50.0% | |
| TGCCCACATTAGGACTTCGT+TGG | - | chr2.4:60717017-60717036 | None:intergenic | 50.0% | |
| TGGAGCTCCTTTGTCTGAAC+AGG | + | chr2.4:60719134-60719153 | MS.gene02789:CDS | 50.0% | |
| ! | GAGTTGACTCATACCCTGCA+AGG | - | chr2.4:60717058-60717077 | None:intergenic | 50.0% |
| ! | GCTCTAAGCCATGCCTTCTA+AGG | + | chr2.4:60718434-60718453 | MS.gene02789:intron | 50.0% |
| ! | TGTGGACAAGAAGGAAGCAC+TGG | + | chr2.4:60717856-60717875 | MS.gene02789:CDS | 50.0% |
| !! | ACCAATCAGGGGCATCTAAC+TGG | - | chr2.4:60718283-60718302 | None:intergenic | 50.0% |
| !! | GAAGGAAGCACTGGAGAACT+TGG | + | chr2.4:60717865-60717884 | MS.gene02789:CDS | 50.0% |
| !! | TCAAGCATTGGCCTCAGCTA+GGG | + | chr2.4:60719251-60719270 | MS.gene02789:CDS | 50.0% |
| ACTCATACCCTGCAAGGCGT+AGG | - | chr2.4:60717052-60717071 | None:intergenic | 55.0% | |
| AGCTGAACCTACGCCTTGCA+GGG | + | chr2.4:60717042-60717061 | MS.gene02789:intron | 55.0% | |
| CGAAGTCCTAATGTGGGCAG+CGG | + | chr2.4:60717018-60717037 | MS.gene02789:intron | 55.0% | |
| CTCACCTTCAGTGCGAGCAT+TGG | - | chr2.4:60717440-60717459 | None:intergenic | 55.0% | |
| CTTGTCCACATTGCCTCTGG+AGG | - | chr2.4:60717846-60717865 | None:intergenic | 55.0% | |
| GAAGTCCTAATGTGGGCAGC+GGG | + | chr2.4:60717019-60717038 | MS.gene02789:intron | 55.0% | |
| GCCAGTTAGATGCCCCTGAT+TGG | + | chr2.4:60718279-60718298 | MS.gene02789:intron | 55.0% | |
| GGATTCTGATGGGAGACGTG+TGG | + | chr2.4:60717330-60717349 | MS.gene02789:CDS | 55.0% | |
| ! | ATTCAGTTGGCCTCCTGCTC+AGG | + | chr2.4:60717709-60717728 | MS.gene02789:CDS | 55.0% |
| ! | GCGGCAAGGTGCTAGAACTA+TGG | - | chr2.4:60718620-60718639 | None:intergenic | 55.0% |
| !! | GTCAAGCATTGGCCTCAGCT+AGG | + | chr2.4:60719250-60719269 | MS.gene02789:CDS | 55.0% |
| GAGCTGAACCTACGCCTTGC+AGG | + | chr2.4:60717041-60717060 | MS.gene02789:intron | 60.0% | |
| CAGCTCCCGCTGCCCACATT+AGG | - | chr2.4:60717027-60717046 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 60716514 | 60719302 | 60716514 | ID=MS.gene02789 |
| chr2.4 | mRNA | 60716514 | 60719302 | 60716514 | ID=MS.gene02789.t1;Parent=MS.gene02789 |
| chr2.4 | exon | 60716514 | 60716516 | 60716514 | ID=MS.gene02789.t1.exon1;Parent=MS.gene02789.t1 |
| chr2.4 | CDS | 60716514 | 60716516 | 60716514 | ID=cds.MS.gene02789.t1;Parent=MS.gene02789.t1 |
| chr2.4 | exon | 60717295 | 60717454 | 60717295 | ID=MS.gene02789.t1.exon2;Parent=MS.gene02789.t1 |
| chr2.4 | CDS | 60717295 | 60717454 | 60717295 | ID=cds.MS.gene02789.t1;Parent=MS.gene02789.t1 |
| chr2.4 | exon | 60717583 | 60717730 | 60717583 | ID=MS.gene02789.t1.exon3;Parent=MS.gene02789.t1 |
| chr2.4 | CDS | 60717583 | 60717730 | 60717583 | ID=cds.MS.gene02789.t1;Parent=MS.gene02789.t1 |
| chr2.4 | exon | 60717850 | 60717927 | 60717850 | ID=MS.gene02789.t1.exon4;Parent=MS.gene02789.t1 |
| chr2.4 | CDS | 60717850 | 60717927 | 60717850 | ID=cds.MS.gene02789.t1;Parent=MS.gene02789.t1 |
| chr2.4 | exon | 60719071 | 60719155 | 60719071 | ID=MS.gene02789.t1.exon5;Parent=MS.gene02789.t1 |
| chr2.4 | CDS | 60719071 | 60719155 | 60719071 | ID=cds.MS.gene02789.t1;Parent=MS.gene02789.t1 |
| chr2.4 | exon | 60719243 | 60719302 | 60719243 | ID=MS.gene02789.t1.exon6;Parent=MS.gene02789.t1 |
| chr2.4 | CDS | 60719243 | 60719302 | 60719243 | ID=cds.MS.gene02789.t1;Parent=MS.gene02789.t1 |
| Gene Sequence |
| Protein sequence |
